Query 029768
Match_columns 188
No_of_seqs 289 out of 1711
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beg_B Splicing factor, argini 99.9 1.6E-25 5.5E-30 162.0 8.4 87 11-100 6-94 (115)
2 1x4c_A Splicing factor, argini 99.9 4.3E-24 1.5E-28 152.5 14.6 89 9-100 4-93 (108)
3 2jvr_A Nucleolar protein 3; RN 99.9 8.2E-22 2.8E-26 142.1 9.2 86 12-101 20-106 (111)
4 4fxv_A ELAV-like protein 1; RN 99.9 2.8E-21 9.7E-26 136.2 11.7 78 18-99 17-98 (99)
5 2dnm_A SRP46 splicing factor; 99.9 5.6E-21 1.9E-25 134.7 11.1 87 11-101 4-94 (103)
6 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-20 4.1E-25 130.7 12.0 86 8-97 4-93 (94)
7 2do0_A HnRNP M, heterogeneous 99.8 6.3E-20 2.2E-24 131.4 15.8 85 13-101 8-95 (114)
8 2cq3_A RNA-binding protein 9; 99.8 5.6E-20 1.9E-24 129.6 14.7 87 11-101 6-94 (103)
9 2cq0_A Eukaryotic translation 99.8 3E-20 1E-24 130.9 13.2 83 15-101 10-96 (103)
10 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-20 5.7E-25 131.9 11.6 84 14-101 6-93 (102)
11 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-20 6.5E-25 131.6 11.2 82 16-101 8-93 (102)
12 1x4a_A Splicing factor, argini 99.8 5E-20 1.7E-24 131.2 13.5 84 14-101 16-100 (109)
13 3ex7_B RNA-binding protein 8A; 99.8 1.1E-20 3.9E-25 137.8 10.3 86 12-101 14-103 (126)
14 3s8s_A Histone-lysine N-methyl 99.8 2.5E-20 8.4E-25 133.9 11.8 78 19-100 5-86 (110)
15 2dgs_A DAZ-associated protein 99.8 4.2E-20 1.4E-24 129.3 12.6 85 12-101 2-90 (99)
16 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-19 4E-24 127.9 14.3 84 14-101 9-94 (103)
17 2cpz_A CUG triplet repeat RNA- 99.8 6.9E-20 2.3E-24 131.7 13.3 80 18-101 23-106 (115)
18 2ywk_A Putative RNA-binding pr 99.8 2.6E-20 9E-25 129.2 10.7 84 11-98 7-93 (95)
19 2cqc_A Arginine/serine-rich sp 99.8 6.2E-20 2.1E-24 127.2 12.5 84 11-98 6-93 (95)
20 2dgo_A Cytotoxic granule-assoc 99.8 2.2E-19 7.6E-24 128.9 15.8 87 11-101 6-96 (115)
21 2dgt_A RNA-binding protein 30; 99.8 7.6E-20 2.6E-24 126.4 12.7 81 13-101 3-83 (92)
22 3ulh_A THO complex subunit 4; 99.8 4.9E-20 1.7E-24 130.6 12.0 84 11-98 20-106 (107)
23 2fy1_A RNA-binding motif prote 99.8 7.3E-20 2.5E-24 132.3 13.1 81 17-101 4-87 (116)
24 4f25_A Polyadenylate-binding p 99.8 3.1E-20 1.1E-24 134.0 10.9 78 19-100 4-83 (115)
25 2dng_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 127.7 13.9 83 13-101 8-94 (103)
26 1x5u_A Splicing factor 3B subu 99.8 1E-19 3.4E-24 128.5 13.1 85 13-101 8-96 (105)
27 2do4_A Squamous cell carcinoma 99.8 1.3E-19 4.3E-24 127.0 13.4 86 12-101 9-97 (100)
28 1wi8_A EIF-4B, eukaryotic tran 99.8 9.6E-20 3.3E-24 128.6 12.9 86 11-102 6-96 (104)
29 2d9p_A Polyadenylate-binding p 99.8 1.1E-19 3.7E-24 128.0 13.0 82 15-101 10-94 (103)
30 2dnz_A Probable RNA-binding pr 99.8 9.9E-20 3.4E-24 126.2 12.3 80 18-101 3-86 (95)
31 2dgx_A KIAA0430 protein; RRM d 99.8 6.9E-20 2.4E-24 127.9 11.4 82 16-101 5-91 (96)
32 2dgp_A Bruno-like 4, RNA bindi 99.8 7E-20 2.4E-24 129.6 11.5 87 11-101 4-97 (106)
33 1whw_A Hypothetical protein ri 99.8 1.4E-19 4.6E-24 126.6 12.7 82 17-102 5-90 (99)
34 1x4h_A RNA-binding protein 28; 99.8 1.6E-19 5.6E-24 128.6 13.4 86 12-101 7-102 (111)
35 2dh8_A DAZ-associated protein 99.8 1.1E-19 3.8E-24 128.5 11.7 86 11-101 7-96 (105)
36 2cph_A RNA binding motif prote 99.8 1.7E-19 5.9E-24 127.6 12.6 86 12-101 7-98 (107)
37 2dnq_A RNA-binding protein 4B; 99.8 1.5E-19 5.2E-24 124.4 12.0 78 16-101 4-81 (90)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.1E-20 3.1E-24 123.8 10.6 78 16-97 3-84 (85)
39 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-19 3.9E-24 123.8 11.1 79 17-99 3-85 (87)
40 2dgu_A Heterogeneous nuclear r 99.8 2.7E-19 9.1E-24 126.2 13.1 77 17-101 8-84 (103)
41 1x4d_A Matrin 3; structural ge 99.8 9E-20 3.1E-24 129.5 10.7 81 15-101 10-93 (102)
42 2cqp_A RNA-binding protein 12; 99.8 8.3E-20 2.8E-24 127.4 10.3 84 13-100 8-95 (98)
43 2dnh_A Bruno-like 5, RNA bindi 99.8 4.2E-19 1.4E-23 125.3 13.9 85 16-101 11-98 (105)
44 2dgv_A HnRNP M, heterogeneous 99.8 1.5E-19 5E-24 124.7 11.1 83 15-101 3-87 (92)
45 2dnp_A RNA-binding protein 14; 99.8 1.5E-19 5E-24 124.5 11.0 77 17-101 6-82 (90)
46 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-19 5.4E-24 126.1 11.2 81 16-101 15-95 (97)
47 2cpe_A RNA-binding protein EWS 99.8 2.7E-19 9.1E-24 128.1 12.4 82 16-101 11-104 (113)
48 1sjq_A Polypyrimidine tract-bi 99.8 8.9E-20 3.1E-24 130.1 9.8 78 18-101 14-93 (105)
49 2ytc_A PRE-mRNA-splicing facto 99.8 1.8E-19 6.1E-24 122.5 10.9 79 13-97 5-84 (85)
50 1x5t_A Splicing factor 3B subu 99.8 1.9E-19 6.4E-24 125.0 11.0 80 18-101 3-87 (96)
51 2cpf_A RNA binding motif prote 99.8 3.3E-19 1.1E-23 124.4 12.2 80 18-101 3-89 (98)
52 3md1_A Nuclear and cytoplasmic 99.8 2.8E-19 9.6E-24 120.8 11.5 76 21-100 2-81 (83)
53 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.9E-24 123.1 10.5 79 19-101 3-86 (88)
54 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-19 5.9E-24 127.7 10.8 81 14-100 9-92 (102)
55 3pgw_S U1-70K; protein-RNA com 99.8 1.2E-18 4.1E-23 152.2 18.4 78 18-99 100-181 (437)
56 1why_A Hypothetical protein ri 99.8 3.4E-19 1.2E-23 124.3 11.9 80 16-101 13-94 (97)
57 1wg5_A Heterogeneous nuclear r 99.8 1.7E-19 5.8E-24 127.8 10.5 85 10-99 5-93 (104)
58 2la6_A RNA-binding protein FUS 99.8 2.6E-19 9.1E-24 125.3 11.3 81 13-97 6-98 (99)
59 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-19 6.4E-24 124.1 10.1 73 19-97 6-78 (89)
60 2hgl_A HNRPF protein, heteroge 99.8 1.1E-19 3.8E-24 135.3 9.7 80 14-98 38-123 (136)
61 2cqd_A RNA-binding region cont 99.8 5.3E-19 1.8E-23 127.2 13.0 84 12-100 9-96 (116)
62 2cpj_A Non-POU domain-containi 99.8 3.9E-19 1.3E-23 124.4 11.9 81 15-101 10-90 (99)
63 2e44_A Insulin-like growth fac 99.8 2E-19 6.7E-24 125.1 10.2 85 12-100 7-92 (96)
64 2div_A TRNA selenocysteine ass 99.8 3.1E-19 1E-23 124.8 11.3 85 17-101 6-95 (99)
65 1p27_B RNA-binding protein 8A; 99.8 2.5E-19 8.6E-24 126.7 10.9 83 14-100 17-103 (106)
66 2dgw_A Probable RNA-binding pr 99.8 5.5E-19 1.9E-23 121.7 12.3 83 12-100 2-87 (91)
67 3p5t_L Cleavage and polyadenyl 99.8 6.2E-20 2.1E-24 126.6 7.5 77 21-101 2-84 (90)
68 2ek1_A RNA-binding protein 12; 99.8 7.8E-20 2.7E-24 126.8 7.8 78 17-98 12-93 (95)
69 2dhg_A TRNA selenocysteine ass 99.8 5.6E-19 1.9E-23 124.5 12.3 83 15-101 4-91 (104)
70 1x4g_A Nucleolysin TIAR; struc 99.8 4.7E-19 1.6E-23 126.2 11.9 79 17-101 22-100 (109)
71 2dnn_A RNA-binding protein 12; 99.8 2.1E-19 7.1E-24 129.0 9.8 80 13-98 9-91 (109)
72 2kxn_B Transformer-2 protein h 99.8 2.3E-19 8E-24 132.2 10.3 83 15-101 41-127 (129)
73 2cpi_A CCR4-NOT transcription 99.8 4.6E-19 1.6E-23 126.9 10.9 82 16-101 11-102 (111)
74 1oo0_B CG8781-PA, drosophila Y 99.8 4E-19 1.4E-23 126.5 10.6 86 12-101 18-107 (110)
75 2fc9_A NCL protein; structure 99.8 9.9E-19 3.4E-23 122.7 12.3 81 14-101 9-92 (101)
76 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.5E-19 3.2E-23 132.1 13.1 80 18-101 37-120 (156)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.4E-19 2.2E-23 130.1 11.9 82 11-96 54-139 (140)
78 2x1f_A MRNA 3'-END-processing 99.8 5.7E-19 2E-23 122.9 10.9 78 20-101 2-83 (96)
79 1wex_A Hypothetical protein (r 99.8 7.4E-19 2.5E-23 125.0 11.7 80 16-101 11-92 (104)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-19 1.8E-23 135.0 11.7 83 15-101 67-153 (165)
81 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.5E-23 128.8 13.3 82 16-101 38-123 (139)
82 2db1_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 128.5 10.4 80 14-98 11-96 (118)
83 1whx_A Hypothetical protein ri 99.8 1.4E-19 4.7E-24 129.9 7.3 78 16-99 6-83 (111)
84 2kt5_A RNA and export factor-b 99.8 1.1E-18 3.9E-23 126.9 12.3 84 13-100 28-114 (124)
85 2cqh_A IGF-II mRNA-binding pro 99.8 4.3E-19 1.5E-23 122.8 9.5 78 17-101 5-84 (93)
86 2cq1_A PTB-like protein L; RRM 99.8 2.1E-18 7.3E-23 122.1 13.2 81 15-101 10-92 (101)
87 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-18 6.5E-23 120.9 12.7 78 16-101 11-90 (99)
88 2khc_A Testis-specific RNP-typ 99.8 4.2E-19 1.4E-23 128.0 9.5 78 16-97 36-117 (118)
89 2jrs_A RNA-binding protein 39; 99.8 8.5E-19 2.9E-23 125.2 11.0 83 14-100 20-106 (108)
90 2ad9_A Polypyrimidine tract-bi 99.8 6.2E-19 2.1E-23 128.4 10.4 80 16-101 27-108 (119)
91 1x4e_A RNA binding motif, sing 99.8 1.8E-19 6.2E-24 122.6 7.1 75 18-96 3-81 (85)
92 2hvz_A Splicing factor, argini 99.8 7.1E-19 2.4E-23 123.4 10.1 76 21-101 1-76 (101)
93 3r27_A HnRNP L, heterogeneous 99.8 1.3E-18 4.5E-23 122.9 11.4 76 18-99 19-96 (100)
94 2la4_A Nuclear and cytoplasmic 99.8 6.9E-19 2.3E-23 123.5 9.8 76 18-99 25-100 (101)
95 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 118.3 11.4 77 15-96 6-86 (87)
96 1wf1_A RNA-binding protein RAL 99.8 1.2E-18 4E-23 124.3 11.1 78 16-101 23-101 (110)
97 3ucg_A Polyadenylate-binding p 99.8 1.2E-18 4.1E-23 119.2 10.7 76 20-100 6-85 (89)
98 2jvo_A Nucleolar protein 3; nu 99.8 9.2E-19 3.2E-23 125.0 10.5 79 15-101 26-104 (108)
99 2lkz_A RNA-binding protein 5; 99.8 4.3E-19 1.5E-23 124.3 8.6 81 15-99 4-94 (95)
100 2cqg_A TDP-43, TAR DNA-binding 99.8 5.7E-18 1.9E-22 119.2 14.3 83 13-101 8-94 (103)
101 2e5g_A U6 snRNA-specific termi 99.8 2.4E-18 8.1E-23 119.4 12.1 77 17-100 5-82 (94)
102 2lxi_A RNA-binding protein 10; 99.8 2.8E-19 9.7E-24 123.9 7.3 77 21-101 2-84 (91)
103 2err_A Ataxin-2-binding protei 99.8 9E-19 3.1E-23 125.1 10.0 81 15-99 24-106 (109)
104 1s79_A Lupus LA protein; RRM, 99.8 7.6E-19 2.6E-23 124.7 9.4 77 15-96 6-85 (103)
105 3n9u_C Cleavage and polyadenyl 99.8 1.4E-18 4.7E-23 132.1 11.3 76 19-98 54-135 (156)
106 1x5p_A Negative elongation fac 99.8 9E-18 3.1E-22 117.1 13.8 79 15-101 10-88 (97)
107 2jwn_A Embryonic polyadenylate 99.8 2.6E-18 8.7E-23 124.8 11.4 77 20-101 36-116 (124)
108 2cpx_A Hypothetical protein FL 99.8 2E-18 6.7E-23 123.8 10.5 81 17-101 22-106 (115)
109 1p1t_A Cleavage stimulation fa 99.8 6.3E-19 2.2E-23 124.1 7.6 80 18-101 6-89 (104)
110 2xnq_A Nuclear polyadenylated 99.8 2.9E-18 1E-22 120.0 11.0 78 15-100 17-95 (97)
111 2cpy_A RNA-binding protein 12; 99.8 1.6E-18 5.4E-23 124.7 9.8 79 16-99 11-93 (114)
112 1sjr_A Polypyrimidine tract-bi 99.8 1.9E-18 6.4E-23 132.2 10.6 85 14-100 40-124 (164)
113 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-18 9.3E-23 123.1 10.9 81 16-100 4-85 (115)
114 2lea_A Serine/arginine-rich sp 99.8 5.9E-19 2E-23 130.9 7.3 84 14-101 41-128 (135)
115 2cq4_A RNA binding motif prote 99.8 3.5E-18 1.2E-22 122.5 11.0 76 21-101 26-105 (114)
116 1wel_A RNA-binding protein 12; 99.8 8.8E-19 3E-23 127.7 7.9 79 15-98 20-102 (124)
117 2kn4_A Immunoglobulin G-bindin 99.8 3.4E-18 1.2E-22 129.0 11.3 82 16-101 66-151 (158)
118 1x4b_A Heterogeneous nuclear r 99.8 4.1E-18 1.4E-22 122.4 11.1 77 20-101 27-107 (116)
119 2fc8_A NCL protein; structure 99.8 8.3E-18 2.9E-22 118.0 12.4 81 15-102 10-94 (102)
120 3ns6_A Eukaryotic translation 99.8 9.4E-19 3.2E-23 123.1 7.4 78 19-99 5-92 (100)
121 2kvi_A Nuclear polyadenylated 99.8 1.9E-18 6.4E-23 120.5 8.6 77 17-101 7-84 (96)
122 2mss_A Protein (musashi1); RNA 99.8 9.3E-19 3.2E-23 116.3 6.7 70 22-96 1-74 (75)
123 1x4f_A Matrin 3; structural ge 99.8 1.1E-18 3.7E-23 125.8 7.4 79 17-101 22-103 (112)
124 2m2b_A RNA-binding protein 10; 99.8 1.9E-18 6.6E-23 127.1 8.5 82 15-101 18-109 (131)
125 2i2y_A Fusion protein consists 99.8 2.8E-18 9.6E-23 128.8 9.3 82 15-101 68-149 (150)
126 1x5o_A RNA binding motif, sing 99.8 8E-18 2.7E-22 120.5 11.0 84 16-99 21-111 (114)
127 2lmi_A GRSF-1, G-rich sequence 99.8 1.3E-18 4.4E-23 123.8 6.7 80 14-98 5-90 (107)
128 2a3j_A U1 small nuclear ribonu 99.8 5.9E-18 2E-22 124.5 10.4 82 15-100 24-110 (127)
129 2hgm_A HNRPF protein, heteroge 99.8 1.8E-18 6.3E-23 127.1 7.6 81 12-98 34-119 (126)
130 2dha_A FLJ20171 protein; RRM d 99.7 3.3E-18 1.1E-22 125.2 8.8 76 17-97 20-102 (123)
131 1fj7_A Nucleolin RBD1, protein 99.7 7.9E-19 2.7E-23 123.2 5.1 77 19-101 16-96 (101)
132 2hgn_A Heterogeneous nuclear r 99.7 5.8E-19 2E-23 131.9 4.7 79 16-100 42-123 (139)
133 3q2s_C Cleavage and polyadenyl 99.7 2.9E-18 1E-22 137.8 9.1 76 19-98 67-148 (229)
134 2krb_A Eukaryotic translation 99.7 2E-18 6.7E-23 116.6 6.9 71 20-94 1-80 (81)
135 2dis_A Unnamed protein product 99.7 6.2E-18 2.1E-22 120.0 9.8 81 17-101 5-93 (109)
136 2rs2_A Musashi-1, RNA-binding 99.7 8.5E-18 2.9E-22 120.0 10.5 80 17-101 22-105 (109)
137 2e5i_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 121.6 12.3 79 18-100 23-102 (124)
138 3zzy_A Polypyrimidine tract-bi 99.7 8.8E-18 3E-22 124.0 10.7 83 15-100 23-106 (130)
139 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-18 5E-23 122.0 6.2 80 15-100 14-98 (100)
140 2hzc_A Splicing factor U2AF 65 99.7 5.4E-18 1.9E-22 115.4 8.6 72 17-95 3-85 (87)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.9E-18 6.3E-23 115.2 6.1 72 21-97 1-76 (77)
142 2f3j_A RNA and export factor b 99.7 7.6E-18 2.6E-22 130.4 10.4 78 18-99 86-166 (177)
143 1wg1_A KIAA1579 protein, homol 99.7 5.7E-18 2E-22 116.2 8.7 76 18-100 3-78 (88)
144 1nu4_A U1A RNA binding domain; 99.7 9.4E-18 3.2E-22 116.6 9.4 83 15-101 3-90 (97)
145 1fjc_A Nucleolin RBD2, protein 99.7 5.5E-18 1.9E-22 117.7 7.8 82 15-101 11-92 (96)
146 2nlw_A Eukaryotic translation 99.7 8.4E-18 2.9E-22 119.1 8.9 78 18-99 13-99 (105)
147 2cq2_A Hypothetical protein LO 99.7 9.5E-18 3.3E-22 121.2 8.3 75 18-98 23-104 (114)
148 2bz2_A Negative elongation fac 99.7 1.8E-17 6E-22 120.8 9.5 79 15-101 34-112 (121)
149 2ki2_A SS-DNA binding protein 99.7 2.6E-18 8.8E-23 118.0 4.6 75 21-100 2-80 (90)
150 3d2w_A TAR DNA-binding protein 99.7 2.8E-17 9.6E-22 113.3 9.7 77 15-100 6-84 (89)
151 3tyt_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 130.5 10.3 77 19-100 3-80 (205)
152 4f02_A Polyadenylate-binding p 99.7 4.6E-17 1.6E-21 128.6 11.4 78 17-98 12-93 (213)
153 2diu_A KIAA0430 protein; struc 99.7 4.4E-17 1.5E-21 113.4 9.6 73 19-101 8-85 (96)
154 1wf0_A TDP-43, TAR DNA-binding 99.7 2.7E-17 9.3E-22 112.6 8.0 77 18-101 3-79 (88)
155 1iqt_A AUF1, heterogeneous nuc 99.7 6.3E-18 2.2E-22 112.1 4.7 70 22-96 1-74 (75)
156 4f02_A Polyadenylate-binding p 99.7 5.4E-17 1.8E-21 128.3 10.7 78 19-100 102-181 (213)
157 3egn_A RNA-binding protein 40; 99.7 4.6E-17 1.6E-21 121.2 9.7 81 17-101 42-131 (143)
158 2adc_A Polypyrimidine tract-bi 99.7 5.8E-17 2E-21 129.4 9.5 85 11-100 25-110 (229)
159 2lcw_A RNA-binding protein FUS 99.5 1.3E-18 4.6E-23 125.1 0.0 80 18-101 5-96 (116)
160 3md3_A Nuclear and cytoplasmic 99.7 2.3E-16 7.9E-21 118.2 12.1 79 16-98 83-165 (166)
161 2xs2_A Deleted in azoospermia- 99.7 2.7E-17 9.3E-22 115.5 6.5 77 16-98 5-84 (102)
162 1fxl_A Paraneoplastic encephal 99.7 2.6E-16 8.9E-21 118.0 11.8 76 20-99 2-81 (167)
163 2dnl_A Cytoplasmic polyadenyla 99.7 8.3E-17 2.8E-21 115.6 8.4 62 17-79 5-73 (114)
164 1b7f_A Protein (SXL-lethal pro 99.7 2.2E-16 7.7E-21 118.8 10.7 78 19-100 2-83 (168)
165 2qfj_A FBP-interacting repress 99.7 4.9E-16 1.7E-20 121.6 12.0 80 18-101 123-206 (216)
166 2j8a_A Histone-lysine N-methyl 99.7 2.3E-16 7.9E-21 115.8 8.9 76 21-100 3-96 (136)
167 3md3_A Nuclear and cytoplasmic 99.7 3.1E-16 1.1E-20 117.4 9.9 76 21-100 1-79 (166)
168 2g4b_A Splicing factor U2AF 65 99.7 4.1E-16 1.4E-20 117.9 10.5 76 18-97 92-171 (172)
169 2yh0_A Splicing factor U2AF 65 99.7 6.7E-16 2.3E-20 119.3 11.4 80 18-101 112-195 (198)
170 1l3k_A Heterogeneous nuclear r 99.7 6.8E-16 2.3E-20 119.1 11.1 80 15-99 8-91 (196)
171 1l3k_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 118.3 11.2 79 18-101 102-184 (196)
172 3pgw_A U1-A; protein-RNA compl 99.6 9.6E-16 3.3E-20 125.2 11.3 75 19-98 206-281 (282)
173 3u1l_A PRE-mRNA-splicing facto 99.6 3.4E-16 1.2E-20 126.6 8.4 82 13-100 127-229 (240)
174 3nmr_A Cugbp ELAV-like family 99.6 1E-15 3.5E-20 115.7 10.4 79 18-97 93-174 (175)
175 2qfj_A FBP-interacting repress 99.6 6.7E-16 2.3E-20 120.8 9.5 75 19-97 27-105 (216)
176 2cjk_A Nuclear polyadenylated 99.6 7.1E-16 2.4E-20 116.0 8.4 76 19-99 86-165 (167)
177 1qm9_A Polypyrimidine tract-bi 99.6 5.1E-16 1.7E-20 120.5 7.2 76 20-100 3-79 (198)
178 3tyt_A Heterogeneous nuclear r 99.6 8E-16 2.7E-20 121.5 8.4 78 19-96 122-203 (205)
179 3nmr_A Cugbp ELAV-like family 99.6 1.8E-15 6.3E-20 114.3 10.1 80 19-99 2-87 (175)
180 1b7f_A Protein (SXL-lethal pro 99.6 3.4E-15 1.2E-19 112.2 11.3 78 17-96 86-167 (168)
181 2dit_A HIV TAT specific factor 99.6 1.2E-14 4E-19 104.0 13.3 80 17-101 12-103 (112)
182 1fxl_A Paraneoplastic encephal 99.6 2.8E-15 9.7E-20 112.3 10.5 77 18-96 86-166 (167)
183 2voo_A Lupus LA protein; RNA-b 99.6 3.1E-15 1.1E-19 117.1 11.0 74 20-98 109-185 (193)
184 3pgw_A U1-A; protein-RNA compl 99.6 2.9E-15 1E-19 122.3 11.2 80 16-99 5-89 (282)
185 1fje_B Nucleolin RBD12, protei 99.6 1.6E-15 5.4E-20 115.3 8.7 78 17-99 96-173 (175)
186 3sde_A Paraspeckle component 1 99.6 2.8E-15 9.5E-20 121.9 10.5 76 17-98 19-94 (261)
187 2adc_A Polypyrimidine tract-bi 99.6 4.2E-15 1.4E-19 118.5 10.1 77 18-99 149-227 (229)
188 1qm9_A Polypyrimidine tract-bi 99.6 2.8E-15 9.5E-20 116.3 8.5 77 18-99 118-196 (198)
189 2g4b_A Splicing factor U2AF 65 99.6 6.8E-15 2.3E-19 111.2 9.3 74 19-99 3-87 (172)
190 2cjk_A Nuclear polyadenylated 99.6 6.3E-15 2.1E-19 110.8 8.0 73 19-97 2-78 (167)
191 3smz_A Protein raver-1, ribonu 99.6 2.2E-14 7.5E-19 117.2 11.2 82 16-101 180-265 (284)
192 2pe8_A Splicing factor 45; RRM 99.6 4E-14 1.4E-18 100.6 11.0 77 19-99 7-93 (105)
193 2yh0_A Splicing factor U2AF 65 99.6 1.4E-14 4.7E-19 111.8 9.1 75 19-100 3-88 (198)
194 2ghp_A U4/U6 snRNA-associated 99.6 1.7E-14 5.7E-19 118.3 10.1 76 17-97 38-115 (292)
195 1fje_B Nucleolin RBD12, protei 99.5 4.5E-15 1.5E-19 112.7 5.4 81 15-100 8-91 (175)
196 3smz_A Protein raver-1, ribonu 99.5 4.4E-14 1.5E-18 115.4 11.7 79 18-100 93-175 (284)
197 2ghp_A U4/U6 snRNA-associated 99.5 2E-14 6.8E-19 117.9 9.6 78 17-99 207-290 (292)
198 1owx_A Lupus LA protein, SS-B, 99.5 7.2E-14 2.4E-18 101.7 9.6 77 13-95 11-91 (121)
199 3sde_A Paraspeckle component 1 99.5 6.3E-14 2.2E-18 113.9 10.0 82 19-100 95-179 (261)
200 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.4E-13 2.2E-17 93.6 12.4 75 20-101 10-91 (100)
201 3tht_A Alkylated DNA repair pr 99.5 6.1E-14 2.1E-18 118.9 8.2 66 17-84 15-82 (345)
202 1jmt_A Splicing factor U2AF 35 99.5 2.4E-14 8.3E-19 101.5 4.3 69 25-97 20-103 (104)
203 3v4m_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 95.7 8.7 75 20-98 5-95 (105)
204 3ue2_A Poly(U)-binding-splicin 99.4 7.5E-13 2.6E-17 96.0 9.1 76 19-98 19-107 (118)
205 3s6e_A RNA-binding protein 39; 99.4 3.5E-12 1.2E-16 91.8 10.1 75 19-97 6-90 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 8.6E-12 2.9E-16 85.9 7.9 72 19-99 6-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 5.8E-11 2E-15 82.2 6.7 70 19-97 14-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 8.5E-09 2.9E-13 81.4 7.4 63 32-98 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 5.5E-08 1.9E-12 68.8 8.7 73 17-95 18-95 (117)
210 1uw4_A UPF3X; nonsense mediate 98.2 1.4E-05 4.8E-10 54.8 9.8 68 21-88 2-75 (91)
211 1whv_A Poly(A)-specific ribonu 98.2 1.3E-05 4.6E-10 55.4 9.0 60 15-79 11-70 (100)
212 2dhx_A Poly (ADP-ribose) polym 98.1 2.5E-05 8.6E-10 54.6 9.9 72 19-99 7-83 (104)
213 1wey_A Calcipressin 1; structu 97.9 2.9E-05 9.9E-10 54.4 6.6 73 20-98 5-82 (104)
214 1wwh_A Nucleoporin 35, nucleop 97.9 7.6E-05 2.6E-09 53.6 8.5 74 16-96 20-93 (119)
215 2l08_A Regulator of nonsense t 97.7 6.4E-05 2.2E-09 52.0 6.0 74 19-92 8-87 (97)
216 3ctr_A Poly(A)-specific ribonu 97.7 4.7E-05 1.6E-09 52.8 5.3 54 21-79 7-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.2 0.00034 1.2E-08 50.9 3.9 73 18-96 5-95 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.0 0.00042 1.4E-08 60.6 3.4 54 21-76 54-107 (464)
219 2kn4_A Immunoglobulin G-bindin 95.3 0.022 7.4E-07 41.7 4.8 33 50-82 3-37 (158)
220 3d45_A Poly(A)-specific ribonu 95.0 0.07 2.4E-06 47.0 7.8 56 19-79 439-494 (507)
221 2i2y_A Fusion protein consists 94.8 0.026 8.8E-07 41.0 3.9 36 59-99 14-50 (150)
222 4eyt_A Telomerase associated p 92.4 1.6 5.3E-05 29.6 9.0 59 18-80 10-68 (129)
223 2g0c_A ATP-dependent RNA helic 90.6 0.56 1.9E-05 30.0 5.3 67 22-97 2-74 (76)
224 2cu1_A Mitogen-activated prote 82.9 1 3.5E-05 30.8 3.2 66 25-97 21-87 (103)
225 3j21_T 50S ribosomal protein L 79.8 6.3 0.00022 26.1 6.2 56 23-78 25-83 (86)
226 3fry_A Probable copper-exporti 79.2 4.9 0.00017 24.6 5.4 55 21-78 7-61 (73)
227 4e8u_A Putative uncharacterize 77.8 7.8 0.00027 29.1 6.9 55 21-76 13-81 (172)
228 2npt_B Mitogen-activated prote 76.5 6.8 0.00023 26.5 5.5 54 27-84 35-89 (100)
229 2okq_A Hypothetical protein YB 74.2 12 0.00042 27.0 6.8 40 37-76 50-108 (141)
230 2jrh_A Mitogen-activated prote 72.0 8 0.00027 25.8 4.9 54 27-84 19-73 (94)
231 2c60_A Human mitogen-activated 71.2 7.3 0.00025 26.7 4.7 54 27-84 46-100 (111)
232 3dxs_X Copper-transporting ATP 70.4 15 0.00051 22.1 6.2 56 21-78 4-63 (74)
233 2w7a_A LINE-1 ORF1P; RNA-bindi 68.5 12 0.00041 25.5 5.4 72 21-96 4-99 (100)
234 3u5e_X 60S ribosomal protein L 68.1 10 0.00035 27.5 5.3 56 23-78 81-139 (142)
235 4a17_R RPL23A, 60S ribosomal p 67.7 10 0.00035 27.8 5.2 56 23-78 89-147 (150)
236 1q8l_A Copper-transporting ATP 61.3 26 0.00088 21.6 7.8 57 20-78 10-70 (84)
237 3iz5_X 60S ribosomal protein L 60.9 11 0.00039 27.6 4.4 54 24-77 92-148 (152)
238 1vq8_S 50S ribosomal protein L 60.2 18 0.0006 23.8 4.9 53 23-75 24-79 (85)
239 1vd2_A Protein kinase C, IOTA 60.2 34 0.0012 22.6 6.3 52 23-77 17-73 (89)
240 2yko_A LINE-1 ORF1P; RNA-bindi 59.1 26 0.0009 27.5 6.5 74 20-97 52-149 (233)
241 1yg0_A COP associated protein; 57.7 24 0.00081 20.0 5.8 55 22-78 4-61 (66)
242 2xmw_A PACS-N, cation-transpor 55.8 27 0.00092 20.0 6.5 56 21-78 5-63 (71)
243 3beg_B Splicing factor, argini 55.8 4.4 0.00015 27.6 1.4 11 68-78 58-68 (115)
244 2l3m_A Copper-ION-binding prot 55.6 28 0.00094 20.1 6.9 56 21-78 7-66 (71)
245 2zkr_s 60S ribosomal protein L 54.5 28 0.00094 25.6 5.6 55 23-77 95-152 (156)
246 3fut_A Dimethyladenosine trans 54.2 16 0.00056 29.0 4.7 30 20-50 110-139 (271)
247 4a4j_A Pacszia, cation-transpo 53.7 31 0.0011 20.1 6.7 56 21-78 4-62 (69)
248 1aw0_A Menkes copper-transport 51.8 32 0.0011 19.8 4.9 56 21-78 5-64 (72)
249 1mli_A Muconolactone isomerase 51.5 52 0.0018 22.1 6.7 64 27-96 10-83 (96)
250 1cpz_A Protein (COPZ); copper 51.5 31 0.0011 19.5 7.8 56 21-78 2-61 (68)
251 3swz_A Steroid 17-alpha-hydrox 50.9 22 0.00074 29.8 5.2 57 23-85 17-77 (494)
252 3uzu_A Ribosomal RNA small sub 50.7 6 0.00021 31.7 1.6 33 21-53 115-147 (279)
253 2g9o_A Copper-transporting ATP 50.4 35 0.0012 21.5 5.2 56 21-78 5-64 (90)
254 2kt2_A Mercuric reductase; nme 49.4 35 0.0012 19.5 6.7 55 22-78 3-60 (69)
255 1x8d_A Hypothetical protein YI 49.2 37 0.0013 23.0 5.3 33 34-67 26-60 (104)
256 3cjk_B Copper-transporting ATP 48.1 40 0.0014 19.7 6.6 55 22-78 5-63 (75)
257 1p6t_A Potential copper-transp 47.7 59 0.002 22.1 6.5 56 21-78 76-135 (151)
258 1osd_A MERP, hypothetical prot 46.9 39 0.0013 19.4 7.1 56 21-78 5-64 (72)
259 2cfx_A HTH-type transcriptiona 46.2 71 0.0024 22.1 7.1 53 27-80 72-124 (144)
260 2ew9_A Copper-transporting ATP 45.7 51 0.0017 22.3 5.8 56 21-78 82-141 (149)
261 1qyr_A KSGA, high level kasuga 44.6 18 0.00062 28.3 3.5 27 21-47 91-117 (252)
262 1kvi_A Copper-transporting ATP 44.5 48 0.0016 19.6 7.2 57 20-78 9-69 (79)
263 2ns6_A Mobilization protein A; 44.2 59 0.002 24.3 6.2 48 21-68 71-127 (185)
264 3ftd_A Dimethyladenosine trans 43.8 17 0.00058 28.4 3.2 28 22-49 97-124 (249)
265 1y3j_A Copper-transporting ATP 43.6 39 0.0013 20.0 4.4 56 21-78 5-64 (77)
266 1yjr_A Copper-transporting ATP 43.3 47 0.0016 19.2 7.6 57 20-78 5-65 (75)
267 1fvq_A Copper-transporting ATP 43.3 46 0.0016 19.1 5.0 55 22-78 5-62 (72)
268 2kyz_A Heavy metal binding pro 42.9 29 0.00099 20.1 3.6 54 22-78 4-57 (67)
269 1i4w_A Mitochondrial replicati 42.9 19 0.00067 29.9 3.6 22 22-43 144-165 (353)
270 2ofg_X Zinc-transporting ATPas 42.7 70 0.0024 21.0 7.4 60 21-83 10-73 (111)
271 3tqs_A Ribosomal RNA small sub 41.7 8.9 0.00031 30.2 1.3 30 23-52 99-128 (255)
272 1mwy_A ZNTA; open-faced beta-s 41.3 52 0.0018 19.1 8.0 56 21-78 5-62 (73)
273 1pqs_A Cell division control p 38.8 52 0.0018 21.1 4.4 50 26-78 6-64 (77)
274 2k2p_A Uncharacterized protein 37.1 35 0.0012 21.5 3.5 58 19-78 22-80 (85)
275 3bgu_A Ferredoxin-like protein 36.8 97 0.0033 21.0 7.3 53 23-75 25-90 (116)
276 3e6i_A CYPIIE1, P450-J, cytoch 36.5 28 0.00097 28.7 3.7 50 23-77 19-71 (476)
277 2crl_A Copper chaperone for su 36.5 73 0.0025 20.5 5.1 54 22-78 22-76 (98)
278 4bby_A Alkyldihydroxyacetoneph 36.4 27 0.00092 31.4 3.7 53 27-79 350-409 (658)
279 3ts2_A Protein LIN-28 homolog 36.0 3.9 0.00013 29.8 -1.6 29 34-66 1-29 (148)
280 2fp3_A Caspase NC; apoptosis, 35.8 54 0.0019 26.6 5.2 49 18-78 60-118 (316)
281 3tbg_A Cytochrome P450 2D6; mo 35.2 19 0.00064 29.8 2.3 48 24-76 20-70 (479)
282 3lpe_A Putative transcription 35.2 93 0.0032 20.3 5.9 34 47-81 40-73 (92)
283 3d53_A Inorganic pyrophosphata 35.2 59 0.002 24.2 4.8 39 33-78 131-169 (173)
284 1opz_A Potential copper-transp 35.0 65 0.0022 18.5 7.6 56 21-78 8-67 (76)
285 1q1o_A Cell division control p 34.9 71 0.0024 21.5 4.8 50 27-79 28-86 (98)
286 3p45_A Caspase-6; protease, hu 33.9 63 0.0022 24.1 4.9 49 18-78 43-103 (179)
287 2e1c_A Putative HTH-type trans 33.9 1.3E+02 0.0044 21.7 6.6 56 23-79 89-145 (171)
288 1x60_A Sporulation-specific N- 33.4 68 0.0023 19.8 4.4 66 17-84 6-72 (79)
289 3od5_A Caspase-6; caspase doma 33.2 59 0.002 25.8 4.9 30 17-46 19-60 (278)
290 2cyy_A Putative HTH-type trans 33.1 1.2E+02 0.0042 21.0 6.6 53 27-80 74-126 (151)
291 2lfv_A Protein DAMX; cell divi 39.0 9.2 0.00032 26.2 0.0 62 16-81 21-87 (106)
292 2d8m_A DNA-repair protein XRCC 32.6 44 0.0015 23.1 3.6 30 17-47 22-51 (129)
293 2qif_A Copper chaperone COPZ; 31.8 68 0.0023 17.7 6.7 55 22-78 5-63 (69)
294 3rfw_A Cell-binding factor 2; 31.6 52 0.0018 25.3 4.2 46 30-79 89-134 (252)
295 1i1g_A Transcriptional regulat 31.5 93 0.0032 21.2 5.3 47 33-79 76-123 (141)
296 3pgw_S U1-70K; protein-RNA com 31.1 60 0.002 27.5 4.9 8 34-41 154-161 (437)
297 4hhu_A OR280; engineered prote 30.9 90 0.0031 21.9 4.9 59 20-79 42-105 (170)
298 2e5p_A Protein PHF1, PHD finge 30.7 15 0.00052 23.0 0.8 20 45-68 28-47 (68)
299 1wj6_A KIAA0049 protein, RSGI 30.7 32 0.0011 23.4 2.5 46 28-76 32-79 (101)
300 2cqy_A Propionyl-COA carboxyla 30.7 46 0.0016 21.3 3.3 45 33-78 33-77 (108)
301 2e7g_A Putative ribosome-bindi 30.3 91 0.0031 21.7 5.0 32 44-75 43-75 (129)
302 1qez_A Ppase, S-ppase, protein 30.1 79 0.0027 23.5 4.8 40 33-79 127-166 (173)
303 2rop_A Copper-transporting ATP 30.0 1.6E+02 0.0054 21.3 7.1 56 21-78 124-183 (202)
304 1nw9_B Caspase 9, apoptosis-re 29.9 88 0.003 24.6 5.4 30 17-46 19-60 (277)
305 2bkf_A Zinc-finger protein NBR 29.7 92 0.0032 20.5 4.5 46 28-76 24-71 (87)
306 2rf4_B DNA-directed RNA polyme 29.5 38 0.0013 22.3 2.5 30 15-44 14-43 (87)
307 3pc6_A DNA repair protein XRCC 29.4 80 0.0027 21.2 4.4 32 16-47 6-37 (104)
308 2lea_A Serine/arginine-rich sp 29.3 11 0.00039 26.3 0.0 26 60-85 6-31 (135)
309 1ik9_C DNA ligase IV; DNA END 29.1 39 0.0013 18.5 2.2 17 29-45 19-35 (37)
310 3iwl_A Copper transport protei 28.9 90 0.0031 18.2 5.5 54 21-78 4-58 (68)
311 2ldi_A Zinc-transporting ATPas 28.8 81 0.0028 17.6 6.1 56 21-78 5-64 (71)
312 2lsl_A Telomerase associated p 34.8 12 0.00041 25.5 0.0 63 18-80 16-99 (137)
313 2nn4_A Hypothetical protein YQ 27.7 23 0.00079 22.6 1.2 17 33-49 4-20 (72)
314 3rw6_A Nuclear RNA export fact 27.6 1.2E+02 0.0039 23.9 5.7 64 18-85 22-87 (267)
315 3bb5_A Stress responsive alpha 27.5 1.5E+02 0.005 20.2 8.0 54 22-75 23-91 (121)
316 1jww_A Potential copper-transp 27.0 98 0.0034 18.0 4.6 56 21-78 5-64 (80)
317 2yua_A Williams-beuren syndrom 26.9 29 0.001 22.9 1.7 20 25-44 22-41 (99)
318 4id3_A DNA repair protein REV1 26.7 87 0.003 19.6 4.1 32 16-48 6-37 (92)
319 2kkh_A Putative heavy metal tr 26.4 1.2E+02 0.0041 18.8 8.3 56 21-78 18-77 (95)
320 1pyo_A Caspase-2; apoptosis, c 26.3 1.4E+02 0.0049 21.7 5.7 52 17-80 31-94 (167)
321 3ced_A Methionine import ATP-b 26.2 1.2E+02 0.0041 19.9 4.8 60 22-81 22-88 (98)
322 2prd_A Pyrophosphate phosphohy 25.9 95 0.0033 23.0 4.6 41 33-78 128-168 (174)
323 3fq3_A Inorganic pyrophosphata 25.7 65 0.0022 24.5 3.7 38 33-78 152-190 (197)
324 2qyc_A Ferredoxin-like protein 25.6 1.4E+02 0.0049 19.4 7.8 51 24-74 9-72 (103)
325 3pm0_A Cypib1, cytochrome P450 25.5 78 0.0027 26.2 4.6 49 23-76 18-68 (507)
326 1wvf_A 4-cresol dehydrogenase 25.4 37 0.0013 29.4 2.6 40 36-75 217-261 (520)
327 3pyf_A 4-diphosphocytidyl-2-C- 25.4 2.5E+02 0.0086 22.2 7.7 48 35-85 238-285 (306)
328 2m0o_A PHD finger protein 1; t 25.3 22 0.00074 23.0 0.8 9 60-68 56-64 (79)
329 1ip9_A BEM1 protein; ubiquitin 25.1 50 0.0017 21.7 2.5 51 23-77 23-76 (85)
330 3ojy_A Complement component C8 25.0 65 0.0022 28.4 4.1 50 26-77 289-348 (554)
331 3bde_A MLL5499 protein; stress 24.9 1.7E+02 0.0057 19.9 6.9 52 23-74 24-87 (120)
332 2pn6_A ST1022, 150AA long hypo 24.9 1.7E+02 0.0059 20.1 6.0 48 32-79 76-124 (150)
333 3dhx_A Methionine import ATP-b 24.6 78 0.0027 21.1 3.6 53 31-83 32-90 (106)
334 2ij2_A Cytochrome P450 BM3; mo 24.5 62 0.0021 26.9 3.7 47 25-76 14-63 (470)
335 3fhk_A UPF0403 protein YPHP; d 24.4 33 0.0011 24.9 1.7 23 60-82 26-48 (147)
336 2gu3_A YPMB protein; APC1927, 24.2 99 0.0034 21.8 4.3 31 25-55 68-101 (136)
337 2ko1_A CTR148A, GTP pyrophosph 24.2 1.3E+02 0.0044 18.4 7.4 50 29-80 14-68 (88)
338 3n9y_A Cholesterol SIDE-chain 23.9 99 0.0034 25.4 4.9 39 34-77 35-73 (487)
339 3h11_B Caspase-8; cell death, 23.7 1.2E+02 0.004 24.0 5.1 30 17-46 15-63 (271)
340 2cg4_A Regulatory protein ASNC 23.5 1.9E+02 0.0063 20.0 7.1 53 27-79 75-128 (152)
341 2f06_A Conserved hypothetical 23.5 1.8E+02 0.0062 19.9 6.7 23 60-83 113-135 (144)
342 2jsh_A Appetite-regulating hor 23.3 28 0.00097 17.6 0.8 22 27-48 2-23 (26)
343 3sir_A Caspase; hydrolase; 2.6 23.2 1E+02 0.0034 24.2 4.5 30 18-47 19-59 (259)
344 4a18_J EIF6, translation initi 23.0 1.3E+02 0.0043 23.8 5.0 54 28-81 75-138 (248)
345 3i4p_A Transcriptional regulat 22.8 2E+02 0.007 20.2 6.3 57 22-78 64-123 (162)
346 1q4r_A Protein AT3G17210; cent 22.7 1.7E+02 0.0059 19.3 6.6 54 22-75 13-81 (112)
347 1po5_A Cytochrome P450 2B4; ox 22.6 60 0.002 26.9 3.3 48 24-76 20-70 (476)
348 2ko4_A Mediator of RNA polymer 22.6 50 0.0017 21.5 2.1 19 25-43 29-48 (81)
349 3pm9_A Putative oxidoreductase 22.5 1E+02 0.0035 26.4 4.8 52 28-79 194-252 (476)
350 2uuu_A Alkyldihydroxyacetoneph 22.3 54 0.0019 29.0 3.0 52 28-79 281-339 (584)
351 2kkc_A Sequestosome-1; P62, PB 21.5 1.9E+02 0.0065 19.4 6.2 46 32-79 42-91 (102)
352 2kpo_A Rossmann 2X2 fold prote 21.5 1.7E+02 0.006 18.9 4.8 46 31-85 32-78 (110)
353 2zbc_A 83AA long hypothetical 21.5 1.5E+02 0.005 18.0 6.6 47 33-79 14-61 (83)
354 2xmm_A SSR2857 protein, ATX1; 21.5 1.1E+02 0.0038 16.6 4.3 55 22-78 4-59 (64)
355 2j32_A Caspase-3; Pro-caspase3 21.2 1.2E+02 0.0042 23.5 4.6 30 18-47 15-56 (250)
356 1lfp_A Hypothetical protein AQ 20.9 46 0.0016 26.3 2.1 56 18-76 92-158 (249)
357 3e4c_A Caspase-1; zymogen, inf 20.9 1.2E+02 0.004 24.5 4.5 49 18-78 59-116 (302)
358 2h54_A Caspase-1; allosteric s 20.8 1.9E+02 0.0064 21.3 5.4 50 18-79 42-100 (178)
359 2w25_A Probable transcriptiona 20.8 2.1E+02 0.0072 19.6 6.6 45 35-79 82-126 (150)
360 3ksm_A ABC-type sugar transpor 20.4 1.6E+02 0.0056 21.7 5.2 57 23-80 63-120 (276)
No 1
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.92 E-value=1.6e-25 Score=161.95 Aligned_cols=87 Identities=55% Similarity=0.991 Sum_probs=67.3
Q ss_pred CCCCC-CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccc-c
Q 029768 11 GSRGV-SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-S 88 (188)
Q Consensus 11 g~~~~-~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~-~ 88 (188)
++.+| +....++|||+|||+++++++|+++|.+||+|+.|.|+.+ +||||+|++.++|++||+.|||.+|+|+. .
T Consensus 6 ~r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 6 GRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp -----------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 44444 4578899999999999999999999999999999999877 39999999999999999999999999952 1
Q ss_pred eeEEEEeeccCC
Q 029768 89 RSYVRVREYDSR 100 (188)
Q Consensus 89 ~r~I~V~~~~~~ 100 (188)
...|+|.++...
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 234788776553
No 2
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.92 E-value=4.3e-24 Score=152.53 Aligned_cols=89 Identities=53% Similarity=0.961 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccc-
Q 029768 9 SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF- 87 (188)
Q Consensus 9 g~g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~- 87 (188)
+++..+++....++|||+|||+++++++|+++|.+||+|+.|.|+.+ + ||||+|++.++|++||+.|||.+|+|+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g-~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 4 GSSGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--G-TGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CCCSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--T-EEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--C-EEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34455667788999999999999999999999999999999999987 3 9999999999999999999999999832
Q ss_pred ceeEEEEeeccCC
Q 029768 88 SRSYVRVREYDSR 100 (188)
Q Consensus 88 ~~r~I~V~~~~~~ 100 (188)
..+.|+|..+...
T Consensus 81 ~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 81 ETAYIRVKVDGPR 93 (108)
T ss_dssp CEEEEEEEESSCC
T ss_pred cceEEEEEeCCCC
Confidence 2358999988664
No 3
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.86 E-value=8.2e-22 Score=142.08 Aligned_cols=86 Identities=30% Similarity=0.449 Sum_probs=71.7
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.++.+....++|||+|||+++++++|+++|++|| +|..+.|..+...+||||+|++.++|++||+.|||.+|+| +
T Consensus 20 ~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r 95 (111)
T 2jvr_A 20 HMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----S 95 (111)
T ss_dssp -----CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----E
T ss_pred hcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----e
Confidence 3445566789999999999999999999999999 8999998644333499999999999999999999999999 7
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|.|..+....
T Consensus 96 ~i~V~~a~~~p 106 (111)
T 2jvr_A 96 VITVERDDNPP 106 (111)
T ss_dssp EEEEEESCC--
T ss_pred EEEEEECCCCC
Confidence 99999886543
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=136.19 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
..+.+|||+|||+++|+++|+++|++||+|..|.|+.++.++ ||||+|++.++|++||+.|||..|+| +.|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 356799999999999999999999999999999999987643 99999999999999999999999999 7999
Q ss_pred EeeccC
Q 029768 94 VREYDS 99 (188)
Q Consensus 94 V~~~~~ 99 (188)
|..+++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 998753
No 5
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=134.72 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=77.8
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
|..++......+|||+|||+++++++|+++|.+||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 82 (103)
T 2dnm_A 4 GSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG- 82 (103)
T ss_dssp CCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 445566677899999999999999999999999999999999987653 299999999999999999999999999
Q ss_pred cceeEEEEeeccCCc
Q 029768 87 FSRSYVRVREYDSRR 101 (188)
Q Consensus 87 ~~~r~I~V~~~~~~r 101 (188)
+.|.|..+...+
T Consensus 83 ---~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 ---RELRVQVARYGR 94 (103)
T ss_dssp ---BCCEEEECSSCC
T ss_pred ---cEEEEEECCcCC
Confidence 699999887665
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=130.69 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHccccee
Q 029768 8 SSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 8 gg~g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
++++..+.......+|||+|||+.+++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+.||+..|
T Consensus 4 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 4 GSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 334455556677899999999999999999999999999999999887653 2999999999999999999999999
Q ss_pred ccccceeEEEEeec
Q 029768 84 RNAFSRSYVRVREY 97 (188)
Q Consensus 84 ~g~~~~r~I~V~~~ 97 (188)
+| +.|+|..+
T Consensus 84 ~g----~~l~v~~a 93 (94)
T 2e5h_A 84 FG----RVIKASIA 93 (94)
T ss_dssp TT----EEEEEEEC
T ss_pred CC----cEEEEEec
Confidence 99 69999865
No 7
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-20 Score=131.42 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=75.7
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
.........+|||+|||+++++++|+++|.+||+|+.|.|+.+.++. ||||+|++.++|++||+.||+..|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 83 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD---- 83 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----
Confidence 34455678999999999999999999999999999999999987643 99999999999999999999999999
Q ss_pred eEEEEeeccCCc
Q 029768 90 SYVRVREYDSRR 101 (188)
Q Consensus 90 r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 84 ~~l~v~~a~~~~ 95 (114)
T 2do0_A 84 RPMHVKMDERAL 95 (114)
T ss_dssp EECEEEECSCCC
T ss_pred CEEEEEEcccCC
Confidence 699999876543
No 8
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-20 Score=129.56 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=77.1
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
...........+|||+|||+++++++|+++|.+||+|..|.|+.+..+ +||||+|++.++|++||+.||+..|+|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 82 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG--- 82 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 344455677899999999999999999999999999999999987543 399999999999999999999999999
Q ss_pred eeEEEEeeccCCc
Q 029768 89 RSYVRVREYDSRR 101 (188)
Q Consensus 89 ~r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 83 -~~l~v~~a~~~~ 94 (103)
T 2cq3_A 83 -RKIEVNNATARV 94 (103)
T ss_dssp -EECEEEECCSSC
T ss_pred -EEEEEEEcccCC
Confidence 799999886654
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3e-20 Score=130.95 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.......+|||+|||+++++++|+++|++||+|..|.|+.++.++ ||||+|++.++|++||+.|||..|+| +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----L 85 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----c
Confidence 345677999999999999999999999999999999999886432 99999999999999999999999999 7
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|.|..+....
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999887655
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=131.93 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
........+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.||+..|+|
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 81 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG---- 81 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 344557799999999999999999999999999999999987543 299999999999999999999999999
Q ss_pred eEEEEeeccCCc
Q 029768 90 SYVRVREYDSRR 101 (188)
Q Consensus 90 r~I~V~~~~~~r 101 (188)
+.|+|..+....
T Consensus 82 ~~l~v~~a~~~~ 93 (102)
T 1x5s_A 82 RQIRVDQAGKSS 93 (102)
T ss_dssp CCCEEEEEECCC
T ss_pred eEEEEEECCCCC
Confidence 699998876654
No 11
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=131.62 Aligned_cols=82 Identities=21% Similarity=0.187 Sum_probs=73.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
......+|||+|||+.+++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.||+..|+| +.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RT 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cE
Confidence 3456789999999999999999999999999999999887443 299999999999999999999999999 79
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|..+....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999887665
No 12
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5e-20 Score=131.19 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.+......+|||+|||+++++++|+++|.+||+|..|.|+.+.. .+||||+|++.++|++||+.||+.+|+| +.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEE
Confidence 34456778999999999999999999999999999999977654 2399999999999999999999999999 799
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|..+...+
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999887665
No 13
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=1.1e-20 Score=137.75 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
..+......++|||+|||+++++++|+++|.+||+|..|.|+.+..+ +||||+|++.++|++||+.|||.+|+|
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 91 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-- 91 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS--
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 33455567889999999999999999999999999999999888532 299999999999999999999999999
Q ss_pred ceeEEEEeeccCCc
Q 029768 88 SRSYVRVREYDSRR 101 (188)
Q Consensus 88 ~~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 92 --~~l~v~~a~~~~ 103 (126)
T 3ex7_B 92 --QPISVDWCFVRG 103 (126)
T ss_dssp --SBCEEEESEESS
T ss_pred --eEEEEEEecCCC
Confidence 699998876554
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=133.86 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
...+|||+|||+++++++|+++|++||+|..|.|+.+..++ ||||+|++.++|++||+.|||.+|+| +.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 45799999999999999999999999999999999987643 99999999999999999999999999 79999
Q ss_pred eeccCC
Q 029768 95 REYDSR 100 (188)
Q Consensus 95 ~~~~~~ 100 (188)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 887544
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=129.30 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
..++......+|||+|||+++++++|+++|.+||+|..|.|+.++.+ +||||+|++.++|++||+ ||+..|+|
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-- 78 (99)
T 2dgs_A 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-- 78 (99)
T ss_dssp CCCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS--
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC--
Confidence 34455667799999999999999999999999999999999987542 299999999999999998 99999999
Q ss_pred ceeEEEEeeccCCc
Q 029768 88 SRSYVRVREYDSRR 101 (188)
Q Consensus 88 ~~r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 79 --~~l~V~~a~~~~ 90 (99)
T 2dgs_A 79 --KKVEVKRAEPRD 90 (99)
T ss_dssp --CBCEEEECCCCC
T ss_pred --eEEEEEECCCCc
Confidence 699999887654
No 16
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=127.91 Aligned_cols=84 Identities=10% Similarity=0.056 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
........+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.||+..|.| +.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 84 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KE 84 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----Ce
Confidence 345567799999999999999999999999999999999987553 399999999999999999999999999 79
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|..+....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2cqi_A 85 VKVNWATTPS 94 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEECCCCc
Confidence 9999887654
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=6.9e-20 Score=131.65 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+++++++|+++|.+||+|..|.|+.+..++ ||||+|++.++|++||+.||+..|+| +.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 98 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRLK 98 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 456899999999999999999999999999999999987432 99999999999999999999999999 7999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|.......
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99886654
No 18
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=129.15 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=72.8
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
+..+.......+|||+|||+.+++++|+++|++||+|..|.|+.+..+. ||||+|++.++|++||+.||+..|+|
T Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (95)
T 2ywk_A 7 GMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-- 84 (95)
T ss_dssp -----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 4445566778999999999999999999999999999999999987642 99999999999999999999999999
Q ss_pred ceeEEEEeecc
Q 029768 88 SRSYVRVREYD 98 (188)
Q Consensus 88 ~~r~I~V~~~~ 98 (188)
+.|.|..+.
T Consensus 85 --~~l~V~~a~ 93 (95)
T 2ywk_A 85 --RPINVSGPS 93 (95)
T ss_dssp --EECEEECCC
T ss_pred --CEEEEEEcC
Confidence 699998764
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=127.16 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=74.4
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
...........+|||+|||+++++++|+++|++||+|..|.|+.++.++ ||||+|++.++|++||+.|||..|+|
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 84 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG- 84 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence 3334455677899999999999999999999999999999999886542 99999999999999999999999999
Q ss_pred cceeEEEEeecc
Q 029768 87 FSRSYVRVREYD 98 (188)
Q Consensus 87 ~~~r~I~V~~~~ 98 (188)
+.|.|..+.
T Consensus 85 ---~~l~v~~a~ 93 (95)
T 2cqc_A 85 ---RRIRVSGPS 93 (95)
T ss_dssp ---EEEEEECCS
T ss_pred ---EEEEEEecC
Confidence 799998764
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=2.2e-19 Score=128.87 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=77.0
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
..........++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ +||||+|.+.++|++||+.|||..|+|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 84 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG- 84 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence 334455677899999999999999999999999999999999988643 299999999999999999999999999
Q ss_pred cceeEEEEeeccCCc
Q 029768 87 FSRSYVRVREYDSRR 101 (188)
Q Consensus 87 ~~~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 85 ---~~l~V~~a~~~~ 96 (115)
T 2dgo_A 85 ---RQIRTNWATRKP 96 (115)
T ss_dssp ---EECEEEESSCCC
T ss_pred ---EEEEEEEccCCC
Confidence 799999887654
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.6e-20 Score=126.43 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
..+......+|||+|||+++++++|+++|++||+|..|.|+.+ ||||+|++.++|++||+.||+..|+| +.|
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 74 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRM 74 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEE
Confidence 3455677899999999999999999999999999999999855 99999999999999999999999999 799
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|..+....
T Consensus 75 ~V~~a~~~~ 83 (92)
T 2dgt_A 75 HVQLSTSRL 83 (92)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999887654
No 22
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=4.9e-20 Score=130.58 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=73.3
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
+..+++....++|||+|||+.+++++|+++|.+||+|..|.|+.+..+. ||||+|++.++|++||+.|||..|+|
T Consensus 20 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 97 (107)
T 3ulh_A 20 FGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG-- 97 (107)
T ss_dssp ----CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC--
Confidence 3455666788999999999999999999999999999999999887543 99999999999999999999999999
Q ss_pred ceeEEEEeecc
Q 029768 88 SRSYVRVREYD 98 (188)
Q Consensus 88 ~~r~I~V~~~~ 98 (188)
+.|.|....
T Consensus 98 --~~l~V~~a~ 106 (107)
T 3ulh_A 98 --RPMNIQLVT 106 (107)
T ss_dssp --EECEEEEEC
T ss_pred --cEEEEEEeC
Confidence 699998653
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=132.32 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
.....+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+| +.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345689999999999999999999999999999999988733 299999999999999999999999999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 99886554
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=3.1e-20 Score=133.96 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
...+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||.+|+| +.|.|..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEE
Confidence 4568999999999999999999999999999999988654 299999999999999999999999999 7999987
Q ss_pred ccCC
Q 029768 97 YDSR 100 (188)
Q Consensus 97 ~~~~ 100 (188)
....
T Consensus 80 a~~~ 83 (115)
T 4f25_A 80 FKSR 83 (115)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7554
No 25
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.3e-19 Score=127.72 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=74.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
...+....++|||+|||+++++++|+++|.+|| |..|.|+.+..++ ||||+|++.++|++|| .||+.+|.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 82 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD--- 82 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT---
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC---
Confidence 344566789999999999999999999999997 9999999987532 9999999999999999 899999999
Q ss_pred eeEEEEeeccCCc
Q 029768 89 RSYVRVREYDSRR 101 (188)
Q Consensus 89 ~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 83 -~~l~V~~a~~~~ 94 (103)
T 2dng_A 83 -RSLRVDIAEGRK 94 (103)
T ss_dssp -EECEEEECCCCC
T ss_pred -eEEEEEEecCCC
Confidence 799999887655
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=128.54 Aligned_cols=85 Identities=27% Similarity=0.313 Sum_probs=75.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
..+.....++|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.||+..|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 84 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG--- 84 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS---
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC---
Confidence 3445567899999999999999999999999999999999987643 299999999999999999999999999
Q ss_pred eeEEEEeeccCCc
Q 029768 89 RSYVRVREYDSRR 101 (188)
Q Consensus 89 ~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 85 -~~l~v~~a~~~~ 96 (105)
T 1x5u_A 85 -KPIRVNKASAHN 96 (105)
T ss_dssp -CBCEEEETTTTS
T ss_pred -eEEEEEECCCCC
Confidence 699999886654
No 27
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=127.05 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=76.1
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
..........+|||+|||+++++++|+++|.+||+|..|.|+.+..+. ||||+|++.++|++||+.|||..|+|
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 85 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE--- 85 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS---
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 334455677899999999999999999999999999999999987432 99999999999999999999999999
Q ss_pred eeEEEEeeccCCc
Q 029768 89 RSYVRVREYDSRR 101 (188)
Q Consensus 89 ~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 86 -~~l~v~~a~~~~ 97 (100)
T 2do4_A 86 -NIIKVAISNSGP 97 (100)
T ss_dssp -CEEEEEECCCCS
T ss_pred -EEEEEEECCCCC
Confidence 699999876654
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-20 Score=128.65 Aligned_cols=86 Identities=16% Similarity=0.332 Sum_probs=75.5
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-----cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-----~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.....+....++|||+|||+++++++|+++|.+|| |..|.|+.+..+ +||||+|++.++|++|| .||+..|+|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34445566779999999999999999999999999 999999988653 29999999999999999 999999999
Q ss_pred ccceeEEEEeeccCCcC
Q 029768 86 AFSRSYVRVREYDSRRS 102 (188)
Q Consensus 86 ~~~~r~I~V~~~~~~r~ 102 (188)
+.|.|..+.....
T Consensus 84 ----~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 ----KRIRVDVADQAQD 96 (104)
T ss_dssp ----EECEEEECCCCCC
T ss_pred ----cEEEEEEccCCCC
Confidence 7999998876653
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=128.05 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.......+|||+|||+++++++|+++|.+||+|..|.|+.+ .+ +||||+|++.++|++||+.|||..|+| +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 84 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KP 84 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SB
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cE
Confidence 44567899999999999999999999999999999999987 32 299999999999999999999999999 69
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|..+....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999886654
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.9e-20 Score=126.24 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+.|||..|+| +.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 45689999999999999999999999999999999988653 299999999999999999999999999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|.......
T Consensus 79 V~~a~~~~ 86 (95)
T 2dnz_A 79 VGHVTERL 86 (95)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 99887665
No 31
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=127.89 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~----~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
+....++|||+|||+++++++|+ ++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||.+|+| +
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r 80 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----K 80 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 34567899999999999999999 99999999999999977543 399999999999999999999999999 7
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|+|..+....
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999886554
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=7e-20 Score=129.57 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=76.0
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHccccee---
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEF--- 83 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l--- 83 (188)
+....+.....+|||+|||+++++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+.||+..+
T Consensus 4 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 4 GSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CCCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 334455677899999999999999999999999999999999987653 2999999999999999999999987
Q ss_pred ccccceeEEEEeeccCCc
Q 029768 84 RNAFSRSYVRVREYDSRR 101 (188)
Q Consensus 84 ~g~~~~r~I~V~~~~~~r 101 (188)
.| +.|.|..+....
T Consensus 84 ~g----~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MN----RPIQVKPADSES 97 (106)
T ss_dssp CS----SCCEEEECCCCS
T ss_pred CC----ceEEEEECCccc
Confidence 77 699999887655
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=126.57 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=73.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||+++++++|+++|.+||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+| +.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 356789999999999999999999999999999999887632 299999999999999999999999999 699
Q ss_pred EEeeccCCcC
Q 029768 93 RVREYDSRRS 102 (188)
Q Consensus 93 ~V~~~~~~r~ 102 (188)
.|..+.....
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9998877653
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=128.55 Aligned_cols=86 Identities=9% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcc------cc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLD------RS 81 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~ln------g~ 81 (188)
..++......+|||+|||+++++++|+++|.+||+|..|.|+.+..+ +||||+|++.++|++||+.|| +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 33445567889999999999999999999999999999999987543 299999999999999999999 99
Q ss_pred eeccccceeEEEEeeccCCc
Q 029768 82 EFRNAFSRSYVRVREYDSRR 101 (188)
Q Consensus 82 ~l~g~~~~r~I~V~~~~~~r 101 (188)
.|+| +.|.|..+....
T Consensus 87 ~~~g----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 87 KLDG----RQLKVDLAVTRD 102 (111)
T ss_dssp ESSS----CEEEEECCCCCC
T ss_pred EEcC----EEEEEEECCCCc
Confidence 9999 699999876654
No 35
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=128.45 Aligned_cols=86 Identities=14% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
+..........+|||+|||+++++++|+++|.+||+|..|.|+.++.++ ||||+|++.++|++||+. |+..|+|
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g- 84 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG- 84 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-
Confidence 4445566788999999999999999999999999999999999986542 999999999999999998 9999999
Q ss_pred cceeEEEEeeccCCc
Q 029768 87 FSRSYVRVREYDSRR 101 (188)
Q Consensus 87 ~~~r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 85 ---~~l~V~~a~~~~ 96 (105)
T 2dh8_A 85 ---RNIDPKPCTPRG 96 (105)
T ss_dssp ---EEEBCCCSCCSS
T ss_pred ---EEEEEEEccCCC
Confidence 699998876554
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=127.63 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=75.6
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeC-CCC----cEEEEEeCCHHHHHHHHHHc-ccceecc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-RGG----MTGIVDYTSYDDMKYAIRKL-DRSEFRN 85 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~-~~~----~~afV~F~~~eda~~Ai~~l-ng~~l~g 85 (188)
...+......+|||+|||+++++++|+++|.+||+|..|.|+.+ ..+ +||||+|++.++|++||+.| |+..|.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34455677899999999999999999999999999999999887 222 29999999999999999999 9999999
Q ss_pred ccceeEEEEeeccCCc
Q 029768 86 AFSRSYVRVREYDSRR 101 (188)
Q Consensus 86 ~~~~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 87 ----~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 ----RRLVLEWADSEV 98 (107)
T ss_dssp ----CBCEEEECCCCC
T ss_pred ----CEEEEEeCCCCC
Confidence 699999887655
No 37
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=124.42 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
+.....+|||+|||+++++++|+++|++||+|..|.|+. +||||+|++.++|++||+.||+..|+| +.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET----TEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEE
Confidence 345679999999999999999999999999999999982 299999999999999999999999999 699999
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
......
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 887665
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=9.1e-20 Score=123.80 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
......+|||+|||+++++++|+++|++||+|..+.|+.+..+ +||||+|++.++|++||+.|||..|+| +.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 78 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RT 78 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cE
Confidence 3457799999999999999999999999999999999887443 299999999999999999999999999 69
Q ss_pred EEEeec
Q 029768 92 VRVREY 97 (188)
Q Consensus 92 I~V~~~ 97 (188)
|.|..+
T Consensus 79 l~v~~a 84 (85)
T 3mdf_A 79 IRVNLA 84 (85)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999865
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=123.85 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
....++|||+|||+++++++|+++|++||+|..|.|+.+..++ ||||+|++.++|++||+.|||..|+| +.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEE
Confidence 3467899999999999999999999999999999999886432 99999999999999999999999999 699
Q ss_pred EEeeccC
Q 029768 93 RVREYDS 99 (188)
Q Consensus 93 ~V~~~~~ 99 (188)
.|..+..
T Consensus 79 ~v~~a~~ 85 (87)
T 3bs9_A 79 RTNWATR 85 (87)
T ss_dssp EEEEEC-
T ss_pred EEEecCC
Confidence 9987654
No 40
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=2.7e-19 Score=126.24 Aligned_cols=77 Identities=9% Similarity=0.160 Sum_probs=70.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.....+|||+|||+++++++|+++|.+||+|..|.|+.+ ||||+|++.++|++||+.||+.+|+| +.|.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEE
Confidence 456689999999999999999999999999999998754 99999999999999999999999999 6999998
Q ss_pred ccCCc
Q 029768 97 YDSRR 101 (188)
Q Consensus 97 ~~~~r 101 (188)
+....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 86654
No 41
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=129.46 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc--eeccccceeE
Q 029768 15 VSRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSY 91 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~-~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~--~l~g~~~~r~ 91 (188)
.......+|||+|||+ +++++||+++|++||+|..|.|+.++. ||||+|++.++|++||+.||+. +|.| +.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN--EAFIEMATTEDAQAAVDYYTTTPALVFG----KP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSS--CEEEEESSHHHHHHHHHHHHHSCCEETT----EE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCC--EEEEEECCHHHHHHHHHHHcCCCceECC----cE
Confidence 3345678999999999 999999999999999999999988764 9999999999999999999875 5999 79
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|..+...+
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999886543
No 42
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=127.44 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
........++|||+|||+++++++|+++|.+||.|..+.++.+..+ +||||+|++.++|++||+.|||..|+|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--- 84 (98)
T 2cqp_A 8 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS--- 84 (98)
T ss_dssp CCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT---
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 3345567799999999999999999999999999987777766443 299999999999999999999999999
Q ss_pred eeEEEEeeccCC
Q 029768 89 RSYVRVREYDSR 100 (188)
Q Consensus 89 ~r~I~V~~~~~~ 100 (188)
+.|.|......
T Consensus 85 -~~l~V~~a~~~ 95 (98)
T 2cqp_A 85 -RKVKLVLGSGP 95 (98)
T ss_dssp -EECEEEESSCS
T ss_pred -eEEEEEEcCCC
Confidence 79999987544
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=4.2e-19 Score=125.35 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
......+|||+|||+++++++|+++|++||+|..|.|+.+..+. ||||+|++.++|++||+.|||..|.|. ..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCccE
Confidence 34567999999999999999999999999999999999987542 999999999999999999999999871 01288
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|..+....
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 998876655
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.5e-19 Score=124.67 Aligned_cols=83 Identities=20% Similarity=0.375 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.+....++|||+|||+++++++|+++|.+||+|..|.|+.+... +||||+|++.++|++||+.||+..|+| +.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l 78 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REI 78 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 44567799999999999999999999999999999999875321 299999999999999999999999999 699
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|..+....
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 999876654
No 45
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=124.49 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.....+|||+|||+++++++|+++|++||+|..|.|+.+ ||||+|++.++|++||+.|||..|+| +.|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 456789999999999999999999999999999999855 99999999999999999999999999 7999998
Q ss_pred ccCCc
Q 029768 97 YDSRR 101 (188)
Q Consensus 97 ~~~~r 101 (188)
+....
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86654
No 46
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=126.10 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
......+|||+|||+++++++|+++|.+||.|. +.++.+...+||||+|++.++|++||+.|||..|+| +.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 445678999999999999999999999999997 677766554599999999999999999999999999 699999
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
.+...+
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 876654
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=128.06 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee--------EEEEEeCCCC----cEEEEEeCCHHHHHHHHHHccccee
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~--------~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.....++|||+|||+++++++|+++|.+||.|. .|.|+.++.+ +||||+|.+.++|++||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456779999999999999999999999999999 6888887543 2999999999999999999999999
Q ss_pred ccccceeEEEEeeccCCc
Q 029768 84 RNAFSRSYVRVREYDSRR 101 (188)
Q Consensus 84 ~g~~~~r~I~V~~~~~~r 101 (188)
+| +.|.|..+....
T Consensus 91 ~g----~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QG----SKLKVSLARKKP 104 (113)
T ss_dssp TT----EECEEECSSCCC
T ss_pred CC----CEEEEEECCCCC
Confidence 99 799999876654
No 48
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=130.08 Aligned_cols=78 Identities=6% Similarity=0.108 Sum_probs=70.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc--cceeccccceeEEEEe
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRVR 95 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln--g~~l~g~~~~r~I~V~ 95 (188)
....+|||+|||++++++||+++|++||+|+.|.|+.++. ||||+|++.++|++||+.|+ +.+|.| +.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kG--faFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN--QAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCC--EEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 4678999999999999999999999999999999998753 99999999999999999886 478999 799998
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
......
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 876544
No 49
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=122.46 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=71.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc-ccceeccccceeE
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSY 91 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l-ng~~l~g~~~~r~ 91 (188)
.++......+|||+|||+++++++|+++|.+||+|..|.|+.++. ||||+|++.++|++||+.| |+..|+| +.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg--~afV~f~~~~~A~~a~~~l~~~~~~~g----~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQ--CAFIQFATRQAAEVAAEKSFNKLIVNG----RR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGT--EEEEEESSHHHHHHHHHTTTTTCEETT----EE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCC--EEEEEECCHHHHHHHHHHhcCCeeECC----CE
Confidence 345556778999999999999999999999999999999998644 9999999999999999999 9999999 69
Q ss_pred EEEeec
Q 029768 92 VRVREY 97 (188)
Q Consensus 92 I~V~~~ 97 (188)
|.|..+
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 998865
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=125.04 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEE-EEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~-~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
...++|||+|||+++++++|+++|++||+|..| .|+.++.+ +||||+|++.++|++||+.|||..|+| +.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 356899999999999999999999999999999 89887432 299999999999999999999999999 799
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|..+....
T Consensus 79 ~v~~a~~~~ 87 (96)
T 1x5t_A 79 TVSYAFKKD 87 (96)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccC
Confidence 999876654
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=124.38 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC---C----cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---G----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~---~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
....+|||+|||+++++++|+++|++||+|..|.|+.+.. + +||||+|.+.++|++||+.|||..|+| +
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----H 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----E
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----e
Confidence 3568999999999999999999999999999999998754 1 299999999999999999999999999 6
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|.|..+....
T Consensus 79 ~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 KLEVRISERAT 89 (98)
T ss_dssp ECEEECSSCSS
T ss_pred EEEEEEccCCC
Confidence 99999886654
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.8e-19 Score=120.83 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=69.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
++|||+|||+++++++|+++|.+||+|..+.|+.+..++ ||||+|++.++|++||+.|||..|+| +.|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 689999999999999999999999999999999885432 99999999999999999999999999 7999987
Q ss_pred ccCC
Q 029768 97 YDSR 100 (188)
Q Consensus 97 ~~~~ 100 (188)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 7653
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=123.06 Aligned_cols=79 Identities=10% Similarity=0.152 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCC-----CcEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~-----~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
...+|||+|||+++++++|+++|++||+|..+.|+.+.. .+||||+|++.++|++||+.|||..|+| +.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEE
Confidence 457999999999999999999999999999999988753 2399999999999999999999999999 7999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|.......
T Consensus 79 v~~a~~~~ 86 (88)
T 4a8x_A 79 ATAVLAPW 86 (88)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99876554
No 54
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=127.66 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=70.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.......++|||+|||+++|++||+++|.+||. +.|.|+.++++. ||||+|++.++|++|| ++|+..|+| +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r 82 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQH----R 82 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS----S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECC----c
Confidence 445567799999999999999999999999995 599999887543 9999999999999999 589999999 6
Q ss_pred EEEEeeccCC
Q 029768 91 YVRVREYDSR 100 (188)
Q Consensus 91 ~I~V~~~~~~ 100 (188)
.|.|......
T Consensus 83 ~i~V~~~~~~ 92 (102)
T 1wez_A 83 YVELFLNSTA 92 (102)
T ss_dssp CCEEEEECCC
T ss_pred EEEEEECCCC
Confidence 8999876544
No 55
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=1.2e-18 Score=152.16 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.||+++|++||.+||+|+.|.|+.+..+ +||||+|++.++|++||+.|||++|+| +.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----r~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG----RRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC----EEEE
Confidence 34579999999999999999999999999999999987532 299999999999999999999999999 6999
Q ss_pred EeeccC
Q 029768 94 VREYDS 99 (188)
Q Consensus 94 V~~~~~ 99 (188)
|..+..
T Consensus 176 V~~a~~ 181 (437)
T 3pgw_S 176 VDVERG 181 (437)
T ss_pred EEEeCC
Confidence 987754
No 56
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=124.30 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec--cccceeEEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVR 93 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~--g~~~~r~I~ 93 (188)
......+|||+|||+++++++|+++|++||+|..|.|+.++. ||||+|++.++|++||+.||+..|. | +.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g--~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS--FAYIQYESLDAAQAACAKMRGFPLGGPD----RRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSC--CEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCC--EEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEE
Confidence 345568999999999999999999999999999999987633 9999999999999999999999999 8 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99886654
No 57
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=127.75 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE-EEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 10 GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 10 ~g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~-~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.+...++....++|||+|||++++++||+++|.+||.|.. |.|+.+..+ +||||+|++.++|++||+. |+..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 5 SSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CCCCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 3455566778899999999999999999999999999987 888777443 3999999999999999987 9999999
Q ss_pred ccceeEEEEeeccC
Q 029768 86 AFSRSYVRVREYDS 99 (188)
Q Consensus 86 ~~~~r~I~V~~~~~ 99 (188)
+.|.|.....
T Consensus 84 ----r~i~v~~~~~ 93 (104)
T 1wg5_A 84 ----RYIEIFKSSR 93 (104)
T ss_dssp ----SCCEEEEECT
T ss_pred ----cEEEEEECCH
Confidence 6899976643
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=125.29 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=73.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE--------EEEEeCCCCc----EEEEEeCCHHHHHHHHHHccc
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~--------~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng 80 (188)
..++....++|||+|||+++++++|+++|++||.|.. |.|+.++.++ ||||+|.+.++|++||+.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456678899999999999999999999999999999 9999886532 999999999999999999999
Q ss_pred ceeccccceeEEEEeec
Q 029768 81 SEFRNAFSRSYVRVREY 97 (188)
Q Consensus 81 ~~l~g~~~~r~I~V~~~ 97 (188)
..|.| +.|.|..+
T Consensus 86 ~~~~g----~~l~V~~A 98 (99)
T 2la6_A 86 KEFSG----NPIKVSFA 98 (99)
T ss_dssp CBSSS----SBCEEEEC
T ss_pred CEeCC----cEEEEEec
Confidence 99999 68998765
No 59
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.9e-19 Score=124.08 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
...-|||+||++.+|+++|+++|.+||+|..+.+...+. ||||+|.+.++|++||+.||+.+|.| ++|.|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kG--faFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQG--IALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCc--EEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 467899999999999999999999999999999987543 99999999999999999999999999 79999876
No 60
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=1.1e-19 Score=135.31 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC---eeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~---i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
+++....++|||+|||+++|++||+++|++||. |..|.|+.++.+. ||||+|++.++|++||+ ||+.+|+|
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g-- 114 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH-- 114 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC--
Confidence 456678899999999999999999999999999 8899999887643 99999999999999998 99999999
Q ss_pred ceeEEEEeecc
Q 029768 88 SRSYVRVREYD 98 (188)
Q Consensus 88 ~~r~I~V~~~~ 98 (188)
+.|.|....
T Consensus 115 --r~i~V~~a~ 123 (136)
T 2hgl_A 115 --RYIEVFKSH 123 (136)
T ss_dssp --SEEEEEECC
T ss_pred --EEEEEEECC
Confidence 699998653
No 61
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.3e-19 Score=127.16 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=74.0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
..........+|||+|||+++++++|+++|.+||+|+.|.|+.++.+ +||||+|++.++|++||+.||+ +|+|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-- 85 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-- 85 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT--
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC--
Confidence 33455677899999999999999999999999999999999987643 2999999999999999999998 8999
Q ss_pred ceeEEEEeeccCC
Q 029768 88 SRSYVRVREYDSR 100 (188)
Q Consensus 88 ~~r~I~V~~~~~~ 100 (188)
+.|.|..+...
T Consensus 86 --~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 --RKANVNLAYLG 96 (116)
T ss_dssp --EECEEEESTTT
T ss_pred --EEEEEEEcccC
Confidence 79999987554
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=124.45 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.......+|||+|||+.+++++|+++|.+||+|..|.|+.++. ||||+|++.++|++||+.|||..|+| +.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg--~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG--FGFIRLETRTLAEIAKVELDNMPLRG----KQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTT--EEEEECSSSHHHHHHHHHHTTCCBTT----BCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCC--EEEEEECCHHHHHHHHHHhCCCEeCC----ceEEE
Confidence 3456678999999999999999999999999999999987644 99999999999999999999999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
.......
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9876654
No 63
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=125.08 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=74.8
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEE-EEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~-~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
...++....++|||+|||+++++++|+++|.+||+|..| .|+.++.++.|||+|.+.++|++||+.|||..|+| +
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~ 82 (96)
T 2e44_A 7 GSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----F 82 (96)
T ss_dssp SCCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----C
T ss_pred CCCCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----c
Confidence 344556678999999999999999999999999999999 58887766579999999999999999999999999 6
Q ss_pred EEEEeeccCC
Q 029768 91 YVRVREYDSR 100 (188)
Q Consensus 91 ~I~V~~~~~~ 100 (188)
.|.|......
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 9999876543
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=124.75 Aligned_cols=85 Identities=8% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee-EEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~-~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.....+|||+|||+++++++|+++|++||+|. .|.|+.++.+ +||||+|++.++|++||+.|||..|.|......
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999988753 299999999999999999999999999522223
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|+|..+....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9998876654
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=126.69 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+.......+|||+|||+.+++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+|
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 92 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---- 92 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----
Confidence 334456789999999999999999999999999999999988663 299999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 029768 90 SYVRVREYDSR 100 (188)
Q Consensus 90 r~I~V~~~~~~ 100 (188)
+.|.|..+...
T Consensus 93 ~~l~V~~a~~~ 103 (106)
T 1p27_B 93 QPISVDWCFVR 103 (106)
T ss_dssp SBCEEEESEES
T ss_pred cEEEEEeecCC
Confidence 69999877554
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-19 Score=121.73 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=73.9
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
..+++....++|||+|||+++++++|+++|.+| .|..|.|+.+..+. ||||+|++.++|++||+ ||+..|+|
T Consensus 2 s~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g--- 76 (91)
T 2dgw_A 2 SSGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG--- 76 (91)
T ss_dssp CCCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT---
T ss_pred CCCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC---
Confidence 345566788999999999999999999999999 99999999985442 99999999999999999 99999999
Q ss_pred eeEEEEeeccCC
Q 029768 89 RSYVRVREYDSR 100 (188)
Q Consensus 89 ~r~I~V~~~~~~ 100 (188)
+.|.|..+...
T Consensus 77 -r~i~v~~a~~~ 87 (91)
T 2dgw_A 77 -RYIEVFREKSG 87 (91)
T ss_dssp -EEEEEEEESSC
T ss_pred -cEEEEEECCcC
Confidence 79999887554
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=6.2e-20 Score=126.57 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC--CeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G--~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
++|||+|||+++++++|+++|++|| +|..|.|+.++.++ ||||+|++.++|++||+.|||.+|+| +.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 5899999999999999999999999 99999999986542 99999999999999999999999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+....
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 8776543
No 68
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=7.8e-20 Score=126.77 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||++++++||+++|.+||.|..+.++.+..+ +||||+|++.++|++||+.||+..|+| +.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEE
Confidence 345699999999999999999999999999988888776543 299999999999999999999999999 799
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|....
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 998653
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=124.46 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhc-CCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccce-eccccce
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSE-FRNAFSR 89 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~-~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~-l~g~~~~ 89 (188)
+.....++|||+|||+++++++|+++|.+ ||+|..|.|+.+..+. ||||+|++.++|++||+.||+.. |+|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---- 79 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---- 79 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----
Confidence 34567799999999999999999999999 9999999999987432 99999999999999999999999 999
Q ss_pred eEEEEeeccCCc
Q 029768 90 SYVRVREYDSRR 101 (188)
Q Consensus 90 r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 699998875544
No 70
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=126.18 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
....++|||+|||+.+++++|+++|.+||+|..|.|+.++. ||||+|++.++|++||+.|||..|+| +.|.|..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g--~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG--YSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHTTCEETT----EECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCC--EEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEe
Confidence 35678999999999999999999999999999999998743 99999999999999999999999999 6999998
Q ss_pred ccCCc
Q 029768 97 YDSRR 101 (188)
Q Consensus 97 ~~~~r 101 (188)
+....
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87655
No 71
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=129.00 Aligned_cols=80 Identities=28% Similarity=0.300 Sum_probs=70.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
..|.....++|||+|||++++++||++||++| .|..|.|+.+..+ +||||+|++.++|++|| .||+.+|+|
T Consensus 9 ~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g---- 82 (109)
T 2dnn_A 9 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ---- 82 (109)
T ss_dssp CCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----
Confidence 33445566899999999999999999999999 8999999988654 29999999999999999 699999999
Q ss_pred eEEEEeecc
Q 029768 90 SYVRVREYD 98 (188)
Q Consensus 90 r~I~V~~~~ 98 (188)
+.|.|..+.
T Consensus 83 r~i~V~~a~ 91 (109)
T 2dnn_A 83 RYVEVSPAT 91 (109)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 799997654
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.3e-19 Score=132.16 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.......+|||+|||+++++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+.|||..|+| +
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~ 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34466789999999999999999999999999999999987543 299999999999999999999999999 6
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|.|..+...+
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999876654
No 73
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=126.93 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH---HHhhcCCCeeEEEEEeCCCC-------cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~---~~F~~~G~i~~~~i~~~~~~-------~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
......+|||+|||+++++++|+ ++|.+||+|..|.|+.+..+ +||||+|++.++|++||+.|||.+|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 99999999999999887642 399999999999999999999999999
Q ss_pred ccceeEEEEeeccCCc
Q 029768 86 AFSRSYVRVREYDSRR 101 (188)
Q Consensus 86 ~~~~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 91 ----r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 ----RTLKASLGTTKY 102 (111)
T ss_dssp ----EEEEEESCCCCS
T ss_pred ----EEEEEEeccccc
Confidence 799999876554
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=4e-19 Score=126.54 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
..++......+|||+|||+.+++++|+++|++||+|..|.|+.+..+ +||||+|.+.++|++||+.|||..|+|
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-- 95 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-- 95 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence 33445567789999999999999999999999999999999887543 399999999999999999999999999
Q ss_pred ceeEEEEeeccCCc
Q 029768 88 SRSYVRVREYDSRR 101 (188)
Q Consensus 88 ~~r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 96 --~~l~V~~a~~~~ 107 (110)
T 1oo0_B 96 --QTIQVDWCFVKG 107 (110)
T ss_dssp --EECEEEESEESS
T ss_pred --cEEEEEEcccCC
Confidence 699998876544
No 75
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=9.9e-19 Score=122.68 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=69.3
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
+.......+|||+|||+++++++|+++|.+||.| .|+.+..+ +||||+|++.++|++||+.||+..|+| +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 81 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----R 81 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----E
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----e
Confidence 3445677999999999999999999999999988 34444222 399999999999999999999999999 6
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|.|..+....
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999887665
No 76
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=9.5e-19 Score=132.14 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=73.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+++++++|+++|++||+|+.|.|+.+..++ ||||+|++.++|++||+.||+..|+| +.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 467899999999999999999999999999999999987542 99999999999999999999999999 7999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99887654
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=130.14 Aligned_cols=82 Identities=23% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 11 GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
+..+.......+|||+|||+++++++|+++|++||+|..+.|+.++.+ +||||+|++.++|++||+.|||..|.|
T Consensus 54 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 132 (140)
T 2ku7_A 54 GGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG- 132 (140)
T ss_dssp CSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-
T ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence 333445567899999999999999999999999999999999887442 399999999999999999999999999
Q ss_pred cceeEEEEee
Q 029768 87 FSRSYVRVRE 96 (188)
Q Consensus 87 ~~~r~I~V~~ 96 (188)
+.|.|..
T Consensus 133 ---~~l~v~~ 139 (140)
T 2ku7_A 133 ---RTIRVNL 139 (140)
T ss_dssp ---EEEEEEC
T ss_pred ---EEEEEEe
Confidence 6999875
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=5.7e-19 Score=122.90 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=71.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..+|||+|||+.+++++|+++|++||.|..|.|+.+..+ +||||+|++.++|++||+.|||..|+| +.|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 478999999999999999999999999999999988543 399999999999999999999999999 799999
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
.+....
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 876543
No 79
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=125.04 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc--eeccccceeEEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVR 93 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~--~l~g~~~~r~I~ 93 (188)
......+|||+|||+++++++|+++|++||+|..|.|+.++. ||||+|++.++|++||+.||+. +|.| +.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR--QALVEFENIDSAKECVTFAADVPVYIAG----QQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCC--EEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 345568999999999999999999999999999999887643 9999999999999999988775 4899 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|.......
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99876544
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.3e-19 Score=134.99 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
......++|||+|||+.+++++|+++|.+||+|..|.|+.+..+ +||||+|.+.++|++||+.|||..|.| +
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~ 142 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----Q 142 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34566789999999999999999999999999999999988643 299999999999999999999999999 6
Q ss_pred EEEEeeccCCc
Q 029768 91 YVRVREYDSRR 101 (188)
Q Consensus 91 ~I~V~~~~~~r 101 (188)
.|.|..+....
T Consensus 143 ~l~V~~a~~~~ 153 (165)
T 1rk8_A 143 TIQVDWCFVKG 153 (165)
T ss_dssp ECEEEESEECC
T ss_pred EEEEEEecCCC
Confidence 99998876544
No 81
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=128.76 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=74.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
......+|||+|||+++++++|+++|++||+|+.|.|+.++.++ ||||+|++.++|++||+.|||..|.| +.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 44566899999999999999999999999999999999886542 99999999999999999999999999 69
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|..+....
T Consensus 114 l~v~~a~~~~ 123 (139)
T 1u6f_A 114 LKVALAASGH 123 (139)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999887654
No 82
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=4.5e-19 Score=128.52 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC---eeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~---i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
+++....++|||+|||+++|++||++||++||. |..|.|+.+..+. ||||+|++.++|++||+ ||+.+|+|
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-- 87 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH-- 87 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT--
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC--
Confidence 455677899999999999999999999999999 8999999887653 99999999999999998 99999999
Q ss_pred ceeEEEEeecc
Q 029768 88 SRSYVRVREYD 98 (188)
Q Consensus 88 ~~r~I~V~~~~ 98 (188)
+.|.|....
T Consensus 88 --r~i~V~~a~ 96 (118)
T 2db1_A 88 --RYIEVFKSH 96 (118)
T ss_dssp --EEEEEEEEC
T ss_pred --eEEEEEECC
Confidence 799997653
No 83
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=129.89 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.....++|||+|||+++++++|+++|++||.|..|.|+..+. ||||+|++.++|++||+.|||..|+| +.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g--~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGI--TAIVEFLEPLEARKAFRHLAYSKFHH----VPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSS--CEEEEESCHHHHHHHHHHHTTCBSSS----SBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC--EEEEEeCCHHHHHHHHHHhCCCEECC----eEEEEE
Confidence 345678999999999999999999999999999998876443 99999999999999999999999999 689998
Q ss_pred eccC
Q 029768 96 EYDS 99 (188)
Q Consensus 96 ~~~~ 99 (188)
.+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 7654
No 84
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=126.90 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
.+++....++|||+|||+.+++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+|
T Consensus 28 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---- 103 (124)
T 2kt5_A 28 GGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---- 103 (124)
T ss_dssp CCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 3455677899999999999999999999999999999999987633 299999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 029768 90 SYVRVREYDSR 100 (188)
Q Consensus 90 r~I~V~~~~~~ 100 (188)
+.|.|..+...
T Consensus 104 ~~l~V~~a~~~ 114 (124)
T 2kt5_A 104 RPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEEECCT
T ss_pred cEEEEEEeCCC
Confidence 69999876553
No 85
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=122.75 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=67.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-eeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc-ceeccccceeEEEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRV 94 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~-i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng-~~l~g~~~~r~I~V 94 (188)
.....+|||+|||+++++++|+++|++||. |..+.+. .+. ||||+|++.++|++||+.||| .+|+| +.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~~g--~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-KSG--YAFVDYPDQNWAIRAIETLSGKVELHG----KIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-ETT--EEEECCSCHHHHHHHHHHHTTTCEETT----EECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-CCC--EEEEEECCHHHHHHHHHHccCCeeECC----EEEEE
Confidence 346689999999999999999999999999 6655553 222 999999999999999999999 99999 79999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+....
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9887654
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-18 Score=122.08 Aligned_cols=81 Identities=7% Similarity=0.133 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc--cceeccccceeEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYV 92 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln--g~~l~g~~~~r~I 92 (188)
.......+|||+|||+++++++|+++|++||+|..|.|+.++. ||||+|++.++|++||+.|+ +.+|.| +.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN--QAFLELATEEAAITMVNYYSAVTPHLRN----QPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHHHSCCEETT----EEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCC--EEEEEECCHHHHHHHHHHhccCCceECC----cEE
Confidence 3345668999999999999999999999999999998887643 99999999999999999775 678999 799
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|.......
T Consensus 84 ~V~~a~~~~ 92 (101)
T 2cq1_A 84 YIQYSNHKE 92 (101)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCccc
Confidence 999876554
No 87
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=120.89 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=70.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcC--CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~--G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
......+|||+|||+++++++|+++|.+| |.|..|.+..+ ||||+|.+.++|++||+.|||..|+| +.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g----~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD----YAFVHFSNREDAVEAMKALNGKVLDG----SPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS----EEEEEESSHHHHHHHHHHHSSEEETT----EEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC----eEEEEeCCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 34567899999999999999999999999 89998887643 99999999999999999999999999 7999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99886654
No 88
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.2e-19 Score=127.97 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.....++|||+|||+++++++|+++|++||+|..|.|+.++.+ +||||+|.+.++|++||+.|||.+|+| +.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----KR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 3456689999999999999999999999999999999987543 299999999999999999999999999 69
Q ss_pred EEEeec
Q 029768 92 VRVREY 97 (188)
Q Consensus 92 I~V~~~ 97 (188)
|+|...
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 998765
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=8.5e-19 Score=125.17 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+++....++|||+|||+.+++++|+++|++||+|..|.|+.+..++ ||||+|.+.++|+.||+.|||..|.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g---- 95 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG---- 95 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 3445677899999999999999999999999999999999886532 99999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 029768 90 SYVRVREYDSR 100 (188)
Q Consensus 90 r~I~V~~~~~~ 100 (188)
+.|.|......
T Consensus 96 ~~l~V~~a~~k 106 (108)
T 2jrs_A 96 RPMKVGHVTER 106 (108)
T ss_dssp SCCEEECSCSS
T ss_pred EEEEEEEcccC
Confidence 69999877543
No 90
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=128.41 Aligned_cols=80 Identities=6% Similarity=0.106 Sum_probs=71.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc--ceeccccceeEEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 93 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng--~~l~g~~~~r~I~ 93 (188)
......+|||+|||+++++++|+++|++||+|+.|.|+.++. ||||+|++.++|++||+.|++ .+|.| +.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG--~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN--QAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGT--EEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC--EEEEEECCHHHHHHHHHHhccCCceECC----eEEE
Confidence 445678999999999999999999999999999999998754 999999999999999999885 58999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|.......
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99876544
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=122.55 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+++++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+.|||..|+| +.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA----QMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE----ESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee----EEEe
Confidence 46789999999999999999999999999999999988543 299999999999999999999999999 5777
Q ss_pred Eee
Q 029768 94 VRE 96 (188)
Q Consensus 94 V~~ 96 (188)
|..
T Consensus 79 ~~~ 81 (85)
T 1x4e_A 79 QSG 81 (85)
T ss_dssp SSC
T ss_pred ecC
Confidence 654
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=123.42 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=69.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeeccCC
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 100 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~~~ 100 (188)
++|||+|||+++++++|+++|++||+|..|.|+.+.. +||||+|++.++|++||+.|||..|+| +.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-GFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSS-SEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 4799999999999999999999999999999998822 399999999999999999999999999 68999987665
Q ss_pred c
Q 029768 101 R 101 (188)
Q Consensus 101 r 101 (188)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=122.95 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccce--eccccceeEEEEe
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVR 95 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~--l~g~~~~r~I~V~ 95 (188)
....+|||+|||+++|+++|+++|++||+|..|.|+..+. ||||+|++.++|.+||+.||+.. |.| +.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg--~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKR--QALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCC--EEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 3457899999999999999999999999999999886544 99999999999999999999986 778 799998
Q ss_pred eccC
Q 029768 96 EYDS 99 (188)
Q Consensus 96 ~~~~ 99 (188)
..+.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 7654
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.9e-19 Score=123.50 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
....+|||+|||+++++++|+++|++||.|..|.|...+. ||||+|++.++|++||+.|||..|+| +.|.|..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g--~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKG--CCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTT--EEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCC--EEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEec
Confidence 4568999999999999999999999999999999985433 99999999999999999999999999 69999876
Q ss_pred cC
Q 029768 98 DS 99 (188)
Q Consensus 98 ~~ 99 (188)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.6e-18 Score=118.31 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
+......+|||+|||+++++++|+++|++||+|..|.|+.++.++ ||||+|++.++|++||+ +++.+|+| +
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~ 80 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----R 80 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----E
Confidence 445677899999999999999999999999999999999886532 99999999999999995 58889999 6
Q ss_pred EEEEee
Q 029768 91 YVRVRE 96 (188)
Q Consensus 91 ~I~V~~ 96 (188)
.|.|+.
T Consensus 81 ~i~v~~ 86 (87)
T 3s7r_A 81 VIDPKK 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999875
No 96
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1.2e-18 Score=124.31 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 16 SRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
+.....+|||+|||++ +++++|+++|.+||+|..|.|. . +||||+|++.++|++||+.||+..|+| +.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~---~-g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH---K-GYAFVQYSNERHARAAVLGENGRVLAG----QTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE---T-TEEEEECSSSHHHHHHHHHHTTCEETT----EECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe---C-CEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 3345589999999999 9999999999999999999882 2 299999999999999999999999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+...+
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9886554
No 97
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.2e-18 Score=119.19 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..+|||+|||+++++++|+++|++||+|..+.|+.+..+ +||||+|.+.++|++|| .|||..|+| +.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 478999999999999999999999999999999988643 29999999999999999 999999999 799999
Q ss_pred eccCC
Q 029768 96 EYDSR 100 (188)
Q Consensus 96 ~~~~~ 100 (188)
.++..
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 87654
No 98
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9.2e-19 Score=125.04 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.......+|||+|||+++++++|+++|++||+|..|.|+ . +||||+|.+.++|++||+.|||..|+| +.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---k-g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---N-GFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---T-TEEEEECSSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---C-CEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 345677899999999999999999999999999999998 2 299999999999999999999999999 79999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
.......
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9876654
No 99
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=124.29 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=70.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC--eeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccc----eec
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRS----EFR 84 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~--i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~----~l~ 84 (188)
+....-.+|||+|||+++|+++|+++|++||. |..|.|+.|+.++ ||||+|++.++|++||+.|||. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34556679999999999999999999999995 6788888876542 9999999999999999999997 488
Q ss_pred cccceeEEEEeeccC
Q 029768 85 NAFSRSYVRVREYDS 99 (188)
Q Consensus 85 g~~~~r~I~V~~~~~ 99 (188)
| ++|.|..++.
T Consensus 84 G----r~i~V~~Aks 94 (95)
T 2lkz_A 84 G----KTIGVDFAKS 94 (95)
T ss_dssp T----EEEEEEECCC
T ss_pred C----EEEEEEEccC
Confidence 9 7999987753
No 100
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-18 Score=119.18 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 13 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
.........+|||+|||+++++++|+++|.+||+|..|.|+.++.++ ||||+|++.++|++||+ ++..|+|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g--- 82 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG--- 82 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT---
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC---
Confidence 34455677899999999999999999999999999999999986532 99999999999999998 4678999
Q ss_pred eeEEEEeeccCCc
Q 029768 89 RSYVRVREYDSRR 101 (188)
Q Consensus 89 ~r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 83 -~~l~v~~a~~~~ 94 (103)
T 2cqg_A 83 -RWCDCKLPNSKQ 94 (103)
T ss_dssp -EEEEEECCCTTC
T ss_pred -eEEEEEecCCCC
Confidence 799999876654
No 101
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=119.39 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=66.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.....+|||+|||+++++++|+++|.+||+|..| +.+..+ .||||+|++.++|++||+ |||..|+| +.|.|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~ 77 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVR 77 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCB
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEE
Confidence 3456799999999999999999999999999987 444433 399999999999999999 99999999 699998
Q ss_pred eccCC
Q 029768 96 EYDSR 100 (188)
Q Consensus 96 ~~~~~ 100 (188)
.+...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 66544
No 102
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=123.89 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=67.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHc-ccceeccccceeEEEE
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRV 94 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~l-ng~~l~g~~~~r~I~V 94 (188)
.+|||+|||+++|++||+++|++|| +|..|.|+.++.+ +||||+|++.++|++||+.| |+..|+| +.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5799999999999999999999999 8999999887653 29999999999999999887 5668999 79999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+.+..
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9776543
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9e-19 Score=125.08 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.......+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+| +.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 34566789999999999999999999999999999999887542 399999999999999999999999999 799
Q ss_pred EEeeccC
Q 029768 93 RVREYDS 99 (188)
Q Consensus 93 ~V~~~~~ 99 (188)
.|..+..
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9987654
No 104
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=124.66 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.......+|||+|||+++|+++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+ ||+.+|+| +.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g----r~ 80 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE----TD 80 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT----TT
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC----EE
Confidence 44556689999999999999999999999999999999987653 299999999999999998 99999999 58
Q ss_pred EEEee
Q 029768 92 VRVRE 96 (188)
Q Consensus 92 I~V~~ 96 (188)
|.|..
T Consensus 81 l~V~~ 85 (103)
T 1s79_A 81 LLILF 85 (103)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 88864
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=132.08 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=69.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G--~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
...+|||+|||+++++++|+++|++|| +|..|.|+.++.++ ||||+|++.++|++||+.|||.+|+| +.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 99999999986543 99999999999999999999999999 799
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998764
No 106
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9e-18 Score=117.10 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.......+|||+|| ++++++|+++|.+||+|..|.|...+. ||||+|++.++|++||+.|||..|+| +.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g--~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRN--CAFVTYEKMESADQAVAELNGTQVES----VQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHTTTEEETT----EEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCC--EEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 34456789999996 899999999999999999999864333 99999999999999999999999999 79999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+....
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9886654
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=2.6e-18 Score=124.84 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..+|||+|||+++++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++|| .|||..|+| +.|.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEE
Confidence 479999999999999999999999999999999987543 29999999999999999 899999999 699999
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
..+...
T Consensus 111 ~a~~~~ 116 (124)
T 2jwn_A 111 PKRTNM 116 (124)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 876544
No 108
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=123.77 Aligned_cols=81 Identities=7% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCe----eEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i----~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||+++++++|+++|.+||.| ..+++......+||||+|++.++|++||+.|||..|+| +.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEE
Confidence 3456899999999999999999999999998 66676644433499999999999999999999999999 699
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|..+....
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999887665
No 109
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.3e-19 Score=124.08 Aligned_cols=80 Identities=29% Similarity=0.380 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|++||+|..|.|+.+..+ +||||+|.+.++|++||+.|||..|+| +.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 34578999999999999999999999999999999988643 299999999999999999999999999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 98776543
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=2.9e-18 Score=120.00 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 15 VSRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~-~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
.+.....+|||+|||+ ++++++|+++|++||.|..|.|.. +||||+|++.++|++||+.|||..|+| +.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~----g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIEXESQEMNFG----KKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECS----SEEEEEESSHHHHHHHHHHHTTSEETT----EECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC----CEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 3456789999999998 999999999999999999998852 299999999999999999999999999 6999
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
|......
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9877543
No 111
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=124.69 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCe-eEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i-~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.....++|||+|||+++++++|++||.+||.| ..|.|+.+.++ +||||+|++.++|++||+. |+..|+| +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----RE 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eE
Confidence 34567899999999999999999999999999 88999887743 2999999999999999976 9999999 79
Q ss_pred EEEeeccC
Q 029768 92 VRVREYDS 99 (188)
Q Consensus 92 I~V~~~~~ 99 (188)
|.|.....
T Consensus 86 i~v~~a~~ 93 (114)
T 2cpy_A 86 AFVHVVTL 93 (114)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99986643
No 112
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=1.9e-18 Score=132.23 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
.++.....+|||+||++.+|+++|+++|++||+|+.|.|+.+..++||||+|++.++|++|++.|||.+|.|. .+.|+
T Consensus 40 ~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~ 117 (164)
T 1sjr_A 40 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLR 117 (164)
T ss_dssp CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEE
T ss_pred CCCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEE
Confidence 3455566889999999999999999999999999999997665444999999999999999999999999641 15899
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
|.+.+..
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9987654
No 113
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=2.7e-18 Score=123.12 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
+.....+|||+|||+.+++++|+++|++||.|..|.|+.+..+ +||||+|.+.++|+.||+.|||..|+| +.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 79 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVV 79 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 3456789999999999999999999999999999999877553 399999999999999999999999999 69999
Q ss_pred eeccCC
Q 029768 95 REYDSR 100 (188)
Q Consensus 95 ~~~~~~ 100 (188)
..+...
T Consensus 80 ~~a~~~ 85 (115)
T 3lqv_A 80 LYYNAN 85 (115)
T ss_dssp EECCHH
T ss_pred EEecCC
Confidence 877654
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=5.9e-19 Score=130.88 Aligned_cols=84 Identities=19% Similarity=0.132 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
++......+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|.|
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---- 116 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---- 116 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 344556789999999999999999999999999999999887543 299999999999999999999999999
Q ss_pred eEEEEeeccCCc
Q 029768 90 SYVRVREYDSRR 101 (188)
Q Consensus 90 r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 117 ~~l~V~~a~~~~ 128 (135)
T 2lea_A 117 RELRVQMARYGR 128 (135)
T ss_dssp SCCEEEECCCCC
T ss_pred EEEEEEECCCCC
Confidence 699999887654
No 115
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=122.50 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=69.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
++|||+|||+++++++|+++|.+||.|..|.|+.+..+ +||||+|++.++|++|| .|||..|+| +.|.|..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~~ 100 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPIIVQA 100 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEEEEe
Confidence 69999999999999999999999999999999987653 29999999999999999 999999999 6999987
Q ss_pred ccCCc
Q 029768 97 YDSRR 101 (188)
Q Consensus 97 ~~~~r 101 (188)
.....
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 65543
No 116
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-19 Score=127.70 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeC-CCC---cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-RGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~-~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.+....++|||+|||+++++++|++||.+||.|..+.++.+ ..+ +||||+|++.++|++||+ ||+..|+| +
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----r 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN----R 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT----S
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC----c
Confidence 44567799999999999999999999999999987444443 333 299999999999999998 99999999 6
Q ss_pred EEEEeecc
Q 029768 91 YVRVREYD 98 (188)
Q Consensus 91 ~I~V~~~~ 98 (188)
.|.|....
T Consensus 95 ~i~V~~a~ 102 (124)
T 1wel_A 95 FIQVHPIT 102 (124)
T ss_dssp CBEEEEEC
T ss_pred EEEEEECC
Confidence 89997653
No 117
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=3.4e-18 Score=129.04 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=73.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.....++|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|+.||+.|||..|.| +.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 141 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RE 141 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3455789999999999999999999999999999999987542 299999999999999999999999999 69
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|..+...+
T Consensus 142 l~v~~a~~~~ 151 (158)
T 2kn4_A 142 LRVQMARYGR 151 (158)
T ss_dssp EEEEEECCSS
T ss_pred EEEEECCCCC
Confidence 9999887654
No 118
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=122.45 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
..+|||+|||+++++++|+++|.+||+|..|.|+.++.+ +||||+|.+.++|++||+. |+..|+| +.|.|.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~V~ 101 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVEPK 101 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEEEE
Confidence 379999999999999999999999999999999988653 2999999999999999987 9999999 799999
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
......
T Consensus 102 ~a~~~~ 107 (116)
T 1x4b_A 102 RAVARE 107 (116)
T ss_dssp CCSSCC
T ss_pred ECCCCc
Confidence 876654
No 119
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=118.00 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
+......+|||+|||+++++++|+++|++|+ .|.++.+..+ +||||+|++.++|++||+.||+.+|+| +
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 82 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----N 82 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 4456779999999999999999999999875 4556666533 299999999999999999999999999 6
Q ss_pred EEEEeeccCCcC
Q 029768 91 YVRVREYDSRRS 102 (188)
Q Consensus 91 ~I~V~~~~~~r~ 102 (188)
.|.|..+.....
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2fc8_A 83 KVTLDWAKPKGE 94 (102)
T ss_dssp ECEEEECCCCCS
T ss_pred EEEEEEecCCCC
Confidence 999998876653
No 120
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=9.4e-19 Score=123.13 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 19 SDYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 19 ~~~~v~V~nLp~------~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
...+|||+|||+ ++++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+.|||..|.|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~-- 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK-- 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 357999999999 9999999999999999999999988763 2999999999999999999999999983
Q ss_pred eeEEEEeeccC
Q 029768 89 RSYVRVREYDS 99 (188)
Q Consensus 89 ~r~I~V~~~~~ 99 (188)
+.|.|..+.+
T Consensus 83 -r~l~V~~a~~ 92 (100)
T 3ns6_A 83 -HRLFLYTMKD 92 (100)
T ss_dssp -CBCEEEESHH
T ss_pred -eEEEEEECch
Confidence 4888886643
No 121
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=120.47 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 17 RRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 17 ~~~~~~v~V~nLp~-~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.....+|||+|||+ .+++++|+++|++||+|..|.|.. + ||||+|++.++|+.||+.|||..|.| +.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~---g-~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN---A-FGFIQFDNPQSVRDAIECESQEMNFG----KKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET---T-EEEEEESCHHHHHHHHHHHTCSSCBT----TTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC---C-EEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEE
Confidence 45678999999999 999999999999999999999862 2 99999999999999999999999999 588998
Q ss_pred eccCCc
Q 029768 96 EYDSRR 101 (188)
Q Consensus 96 ~~~~~r 101 (188)
......
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 776544
No 122
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=9.3e-19 Score=116.27 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=64.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+|||+|||+++++++|+++|++||+|..|.|+.++.+ +||||+|++.++|++||+ ||+..|+| +.|.|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g----~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN----KMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS----CCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC----EEEEEEe
Confidence 5999999999999999999999999999999887642 299999999999999997 99999999 6888874
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=125.83 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=68.9
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc--ceeccccceeEEE
Q 029768 17 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 93 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng--~~l~g~~~~r~I~ 93 (188)
.....+|||+|||++ ++++||+++|++||+|..|.|+..+. ||||+|++.++|++||+.||+ .+|.| +.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTT--EEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 345789999999998 99999999999999999999986543 999999999999999998875 46999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|.......
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 98875543
No 124
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=127.13 Aligned_cols=82 Identities=7% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE--EEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccc----eec
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRS----EFR 84 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~--~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~----~l~ 84 (188)
.......+|||+|||+++|+++|+++|.+||.|.. |.|+.++.+ +||||+|++. +|++||+.|||. +|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456689999999999999999999999999976 899988743 2999999999 999999999999 999
Q ss_pred cccceeEEEEeeccCCc
Q 029768 85 NAFSRSYVRVREYDSRR 101 (188)
Q Consensus 85 g~~~~r~I~V~~~~~~r 101 (188)
| +.|.|..+...+
T Consensus 97 g----r~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 G----KTINVEFAKGSK 109 (131)
T ss_dssp G----CCCCCEECCCSC
T ss_pred C----EEEEEEECCCCC
Confidence 9 699999886654
No 125
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=2.8e-18 Score=128.75 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.......+|||+|||+++++++|+++|++||+|..|.|+.+..+ ||||+|.+.++|+.||+.|||..|+| +.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG-FAFVEFEDPRDAADAVRELDGRTLCG----CRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCS-EEEEEESSHHHHHHHHHHHSSSCSSS----SCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCc-EEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 34466789999999999999999999999999999999988444 99999999999999999999999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+...+
T Consensus 143 ~~a~~~~ 149 (150)
T 2i2y_A 143 ELSNGEK 149 (150)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9876553
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=120.49 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceecccc----c
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAF----S 88 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~----~ 88 (188)
.....++|||+|||+++++++|+++|.+||+|..|.|+.+..+. ||||+|.+.++|++||+.|||..|.+.. .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34567899999999999999999999999999999999987432 9999999999999999999999996432 1
Q ss_pred eeEEEEeeccC
Q 029768 89 RSYVRVREYDS 99 (188)
Q Consensus 89 ~r~I~V~~~~~ 99 (188)
.++|.|..+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 36788887764
No 127
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=123.81 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC---eeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 14 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 14 ~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~---i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
.......++|||+|||+++|+++|++||.+||. |..|.|+.+..+ +||||+|++.++|++||+ ||+..|+|
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-- 81 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ-- 81 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS--
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC--
Confidence 345678899999999999999999999999998 899999988664 299999999999999998 99999999
Q ss_pred ceeEEEEeecc
Q 029768 88 SRSYVRVREYD 98 (188)
Q Consensus 88 ~~r~I~V~~~~ 98 (188)
+.|.|....
T Consensus 82 --r~i~V~~a~ 90 (107)
T 2lmi_A 82 --RYVEVYEIN 90 (107)
T ss_dssp --SCCCCEECC
T ss_pred --eEEEEEECC
Confidence 689887654
No 128
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=124.54 Aligned_cols=82 Identities=10% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~----~~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+......+|||+|||+.+++++|+ ++|++||+|..|.+..+.. .+||||+|++.++|+.||+.|||..|.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g---- 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG---- 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----
Confidence 344567899999999999999976 6999999999988765322 2399999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 029768 90 SYVRVREYDSR 100 (188)
Q Consensus 90 r~I~V~~~~~~ 100 (188)
+.|.|..+...
T Consensus 100 r~l~V~~a~~~ 110 (127)
T 2a3j_A 100 NPLVITFSETP 110 (127)
T ss_dssp SCCEEEECCCC
T ss_pred CEEEEEEccCc
Confidence 69999877543
No 129
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.8e-18 Score=127.13 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee--EEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccc
Q 029768 12 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNA 86 (188)
Q Consensus 12 ~~~~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~--~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~ 86 (188)
...++....++|||+|||+++|++||++||++| .|+ .|.|+.++.+ +||||+|++.++|++||+ +++.+|+|
T Consensus 34 ~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g- 110 (126)
T 2hgm_A 34 SNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH- 110 (126)
T ss_dssp -CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT-
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC-
Confidence 334455677899999999999999999999999 677 8888887664 299999999999999997 57899999
Q ss_pred cceeEEEEeecc
Q 029768 87 FSRSYVRVREYD 98 (188)
Q Consensus 87 ~~~r~I~V~~~~ 98 (188)
+.|.|....
T Consensus 111 ---R~I~V~~a~ 119 (126)
T 2hgm_A 111 ---RYIEVFKSS 119 (126)
T ss_dssp ---BCCCCEEEC
T ss_pred ---EEEEEEECC
Confidence 688887653
No 130
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=125.24 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCe----eEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i----~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
....++|||+|||+++|++||++||++||+| ..|.|+.+.++. ||||+|++.++|++||++ |+..|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g---- 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK---- 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC----
Confidence 4677999999999999999999999999975 688898886543 999999999999999985 9999998
Q ss_pred eEEEEeec
Q 029768 90 SYVRVREY 97 (188)
Q Consensus 90 r~I~V~~~ 97 (188)
+.|.|...
T Consensus 95 R~i~V~~a 102 (123)
T 2dha_A 95 RYIELFRS 102 (123)
T ss_dssp CEECCEEE
T ss_pred eEEEEEEC
Confidence 68988754
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-19 Score=123.19 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCC----CCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~----~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..++|||+|||+++++++|+++|.+||.|.. .++.+. ..+||||+|++.++|++||+ |||..|.| +.|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEEE
Confidence 6789999999999999999999999998766 333332 22399999999999999998 99999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+....
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9876544
No 132
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.8e-19 Score=131.88 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....++|||+|||+++|++||+++|++|| |+.|.|+.++.+. ||||+|++.++|++|| +||+.+|.| +.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g----R~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH----RYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS----CCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC----EEE
Confidence 446778999999999999999999999999 7799998886642 9999999999999999 799999999 689
Q ss_pred EEeeccCC
Q 029768 93 RVREYDSR 100 (188)
Q Consensus 93 ~V~~~~~~ 100 (188)
.|......
T Consensus 116 ~V~~a~~~ 123 (139)
T 2hgn_A 116 ELFLNSTT 123 (139)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99876544
No 133
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.9e-18 Score=137.84 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G--~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
..++|||+|||++||+++|+++|.+|| +|+.|.|+.++.++ ||||+|++.++|++||+.||+.+|+| +.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G----r~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----BCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC----EEe
Confidence 457899999999999999999999999 99999999986543 99999999999999999999999999 699
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
+|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998654
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=116.63 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=61.9
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhhcCCCeeEEEEEeCCC--CcEEEEEeCCHHHHHHHHHHcccceecccccee-
Q 029768 20 DYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS- 90 (188)
Q Consensus 20 ~~~v~V~nLp~~~------t~~dL~~~F~~~G~i~~~~i~~~~~--~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r- 90 (188)
+.+|||+|||+.+ ++++|+++|++||+|..|.|+.+.. .+||||+|++.++|++||+.|||..|+| +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g----~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK----QH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS----SS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC----ce
Confidence 3689999999999 7899999999999999998873221 1399999999999999999999999999 5
Q ss_pred EEEE
Q 029768 91 YVRV 94 (188)
Q Consensus 91 ~I~V 94 (188)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 6665
No 135
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=120.02 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-eeEEEEE-eCCCC----cEEEEEeCCHHHHHHHHHHcc--cceeccccc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDRGG----MTGIVDYTSYDDMKYAIRKLD--RSEFRNAFS 88 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~-i~~~~i~-~~~~~----~~afV~F~~~eda~~Ai~~ln--g~~l~g~~~ 88 (188)
....++|||+|||+++++++|+++|.+||+ |..|.|+ .+..+ +||||+|.+.++|+.||+.|| +..|+|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--- 81 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--- 81 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---
Confidence 345789999999999999999999999998 9999987 44432 399999999999999999996 589999
Q ss_pred eeEEEEeeccCCc
Q 029768 89 RSYVRVREYDSRR 101 (188)
Q Consensus 89 ~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 82 -~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 -HQIAVDWAEPEI 93 (109)
T ss_dssp -BCCEEEESCSSC
T ss_pred -CeEEEEEcCCCC
Confidence 699999886654
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=8.5e-18 Score=120.05 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=68.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.+ +..|+| +.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEE
Confidence 356689999999999999999999999999999999988643 29999999999999999876 599999 799
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
.|.......
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999876554
No 137
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.7e-17 Score=121.62 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcE-EEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~-afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.....|||+||++.+++++|+++|++||+|..|.|+.. . +| |||+|++.++|+.||+.|||.+|.|. .+.|+|..
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--~~~l~V~~ 98 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N-GIQAMVEFESVLCAQKAKAALNGADIYAG--CCTLKIEY 98 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S-SEEEEEEESSHHHHHHHHHHHTTCCCBTT--BSEEEEEC
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C-CCEEEEEECCHHHHHHHHHHhCCCEecCC--CeEEEEEE
Confidence 34456899999999999999999999999999998764 3 46 99999999999999999999999872 14899987
Q ss_pred ccCC
Q 029768 97 YDSR 100 (188)
Q Consensus 97 ~~~~ 100 (188)
++..
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 7654
No 138
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=8.8e-18 Score=124.02 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcE-EEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~-afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
++...-..|||+||++.+|+++|+++|++||+|..|.|+.+..+ | |||+|++.++|++||+.|||.+|.|. .+.|+
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~g-fqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~Lr 99 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ-FQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLR 99 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTE-EEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCC-cEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEE
Confidence 34456678999999999999999999999999999988876543 6 99999999999999999999999872 25889
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
|+..+..
T Consensus 100 I~~ak~~ 106 (130)
T 3zzy_A 100 IDFSKLT 106 (130)
T ss_dssp EEECSCS
T ss_pred EEecCCC
Confidence 9877554
No 139
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=121.95 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=67.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCC--CC---cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~--~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
++....++|||+|||+++++++|+++|++|| |..|.|+.+. .+ +||||+|.+.++|++|| .|||..|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---- 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence 4457789999999999999999999999999 9999998876 12 39999999999999999 899999999
Q ss_pred eEEEEeeccCC
Q 029768 90 SYVRVREYDSR 100 (188)
Q Consensus 90 r~I~V~~~~~~ 100 (188)
+.|.|..+...
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 68999877543
No 140
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=5.4e-18 Score=115.42 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=65.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~----G-------~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
.....+|||+|||+++++++|+++|.+| | +|..+.+..++. ||||+|.+.++|++|| .|||..|+|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg--~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSS--EEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCc--EEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3456899999999999999999999999 8 999999887643 9999999999999999 999999999
Q ss_pred ccceeEEEEe
Q 029768 86 AFSRSYVRVR 95 (188)
Q Consensus 86 ~~~~r~I~V~ 95 (188)
+.|+|.
T Consensus 80 ----~~l~V~ 85 (87)
T 2hzc_A 80 ----QSLKIR 85 (87)
T ss_dssp ----EECEEE
T ss_pred ----eEEEEe
Confidence 688886
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=115.15 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=65.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
++|||+|||+++++++|+++|++||+|..+.|+.++.+ +||||+|.+.++|++||+.|| ..|+| +.|.|..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g----~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS----KTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS----CCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC----EEEEEEe
Confidence 47999999999999999999999999999999987643 399999999999999999999 99999 5888875
Q ss_pred c
Q 029768 97 Y 97 (188)
Q Consensus 97 ~ 97 (188)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 3
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=7.6e-18 Score=130.43 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
...++|||+|||+.+++++|+++|++||+|+.|.|+.+..+ +||||+|++.++|++||+.|||..|+| +.|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----r~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 34689999999999999999999999999999999987633 299999999999999999999999999 58888
Q ss_pred eeccC
Q 029768 95 REYDS 99 (188)
Q Consensus 95 ~~~~~ 99 (188)
..+..
T Consensus 162 ~~a~~ 166 (177)
T 2f3j_A 162 QLVAS 166 (177)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 87643
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=5.7e-18 Score=116.16 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
....+|||+|||+++++++|+++|++| +|..+.|.. ..+||||+|++.++|++||+.|||.+|+| +.|+|..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR--NKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG--GGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC--CCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEc
Confidence 456899999999999999999999999 999998852 22399999999999999999999999999 79999876
Q ss_pred cCC
Q 029768 98 DSR 100 (188)
Q Consensus 98 ~~~ 100 (188)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=9.4e-18 Score=116.57 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~----~~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+......+|||+|||+++++++|+ ++|++||+|..|.|+.... .+||||+|.+.++|+.||+.|||..|+|
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---- 78 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----
Confidence 345677899999999999999999 9999999999998874211 1399999999999999999999999999
Q ss_pred eEEEEeeccCCc
Q 029768 90 SYVRVREYDSRR 101 (188)
Q Consensus 90 r~I~V~~~~~~r 101 (188)
+.|.|.......
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 799998876543
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=117.67 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
+......+|||+|||+++++++|+++|.+||.|..+ .......+||||+|++.++|++||+.|||..|+| +.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 344567899999999999999999999999998776 1111112399999999999999999999999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+....
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9876554
No 146
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=119.14 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCC------CHHHHHHHhhcCCCeeEEEEEeCCC--CcEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 18 RSDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~------t~~dL~~~F~~~G~i~~~~i~~~~~--~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
...++|||+|||+.+ ++++|+++|++||+|..|.|+.... .+||||+|++.++|++||+.|||..|+|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g---- 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---- 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST----
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC----
Confidence 346899999999999 7899999999999999999883221 1399999999999999999999999999
Q ss_pred e-EEEEeeccC
Q 029768 90 S-YVRVREYDS 99 (188)
Q Consensus 90 r-~I~V~~~~~ 99 (188)
+ .|.|..+..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 6 899987654
No 147
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=121.20 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=65.4
Q ss_pred CCCcEEEE--eCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee-----cccccee
Q 029768 18 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-----RNAFSRS 90 (188)
Q Consensus 18 ~~~~~v~V--~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l-----~g~~~~r 90 (188)
....+||| +||++++++++|+++|++||+|..|.|+.++ +||||+|++.++|++||+.|||.+| .| .
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r--gfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g----~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK--PYSFARYRTTEESKRAYVTLNGKEVVDDLGQK----I 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC--SCEEEEESSHHHHHHHHHHTTTCEEECTTSCE----E
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC--CEEEEEECCHHHHHHHHHHhCCCEEccccCCC----c
Confidence 44678999 7799999999999999999999999887553 3999999999999999999999998 44 6
Q ss_pred EEEEeecc
Q 029768 91 YVRVREYD 98 (188)
Q Consensus 91 ~I~V~~~~ 98 (188)
.|.|....
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 88887654
No 148
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=1.8e-17 Score=120.80 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.+.....+|||+|| ++++++|+++|++||+|..|.|...+. ||||+|++.++|++||+.|||.+|+| +.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg--~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRN--CAFVTYEKMESADQAVAELNGTQVES----VQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTT--EEEEECSSHHHHHHHHHHHTTCBCSS----CBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCC--EEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 34466789999996 699999999999999999999874333 99999999999999999999999999 69999
Q ss_pred eeccCCc
Q 029768 95 REYDSRR 101 (188)
Q Consensus 95 ~~~~~~r 101 (188)
..+....
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9876654
No 149
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.6e-18 Score=117.99 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.+ |++||+.|||..|+| +.|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC----eEEEEEE
Confidence 47999999999999999999999999999999987643 29999999999 999999999999999 6899987
Q ss_pred ccCC
Q 029768 97 YDSR 100 (188)
Q Consensus 97 ~~~~ 100 (188)
+...
T Consensus 77 a~~~ 80 (90)
T 2ki2_A 77 ANPK 80 (90)
T ss_dssp C---
T ss_pred cCCC
Confidence 6543
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=2.8e-17 Score=113.34 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=61.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec--cccceeEE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYV 92 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~--g~~~~r~I 92 (188)
.+....++|||+|||+++|+++|+++|++||+|..|.|+.+..+ ||||+|++.++|++ |++..+. | +.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srG-faFV~F~~~~~A~~----~~~~~~~~~g----~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRA-FAFVTFADDKVAQS----LCGEDLIIKG----ISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCS-EEEEEESCHHHHHH----HTTCEEEETT----EEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCC-EEEEEECCHHHHHH----HcCCCcccCC----EEE
Confidence 34567899999999999999999999999999999999987555 99999999999983 4555544 6 789
Q ss_pred EEeeccCC
Q 029768 93 RVREYDSR 100 (188)
Q Consensus 93 ~V~~~~~~ 100 (188)
.|..+...
T Consensus 77 ~v~~a~~k 84 (89)
T 3d2w_A 77 HISNAEPK 84 (89)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99877654
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=2.2e-17 Score=130.50 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 19 SDYRVLVTGLP-SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 19 ~~~~v~V~nLp-~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
.+++|||+||| +.+++++|.++|++||.|..|.|+.+..+ ||||+|++.++|+.||+.|||.+|.| +.|.|...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g-~afV~f~~~~~A~~Ai~~lng~~~~g----~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG-AAMVEMADGYAVDRAITHLNNNFMFG----QKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTT-CEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCC-EEEEEECCHHHHHHHHHHhCCCEECC----ceEEEEEc
Confidence 46899999999 89999999999999999999999887655 99999999999999999999999999 69999976
Q ss_pred cCC
Q 029768 98 DSR 100 (188)
Q Consensus 98 ~~~ 100 (188)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 543
No 152
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=4.6e-17 Score=128.64 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||+++|+++|+++|++||+|+.|.|+.+..++ ||||+|.+.++|++||+.||+..+.| +.|
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g----~~i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG----KPV 87 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC----ccc
Confidence 3455799999999999999999999999999999999986543 99999999999999999999999999 688
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|....
T Consensus 88 ~~~~~~ 93 (213)
T 4f02_A 88 RIMWSQ 93 (213)
T ss_dssp EEEECC
T ss_pred cccccc
Confidence 887553
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=113.40 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=63.1
Q ss_pred CCcEEEEeCCCCCCCHHH----HHHHhhcC-CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 19 SDYRVLVTGLPSSASWQD----LKDHMRRA-GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~d----L~~~F~~~-G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....|||+|||+.+++++ |+++|++| |+|..| .++||||+|.+.++|++|++.|||.+|.| ++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG----NRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC----ceEE
Confidence 444499999999999988 55899999 499887 12499999999999999999999999999 7999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+...+
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99876654
No 154
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=112.56 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=63.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
....+|||+|||+++++++|+++|++||+|..|.|+.+..+ ||||+|++.++|++|+.. ...+.| ..|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~~~~~--~~~~~g----~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA-FAFVTFADDQIAQSLCGE--DLIIKG----ISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCS-CCEEECSCHHHHHHTTTC--EEEETT----EEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCC-EEEEEECCHHHHHHHhcC--CceeCC----EEEEEEec
Confidence 35689999999999999999999999999999999877444 999999999999865322 344577 69999877
Q ss_pred cCCc
Q 029768 98 DSRR 101 (188)
Q Consensus 98 ~~~r 101 (188)
....
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=6.3e-18 Score=112.09 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=62.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+|||+|||+++++++|+++|++||+|..+.|+.++.+ +||||+|++.++|++||+ +++..|+| +.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g----~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL----SKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTT----BCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECC----EEEEEEE
Confidence 5999999999999999999999999999999887542 299999999999999997 58999999 5887764
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=5.4e-17 Score=128.26 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
...+|||+|||+.+++++|+++|++||.|+.|.|+.+..+ +||||+|.+.++|++||+.|||.+|+| +.|.|..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g----~~i~V~~ 177 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGR 177 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC----EEEEEEE
Confidence 4568999999999999999999999999999999988654 299999999999999999999999999 7999987
Q ss_pred ccCC
Q 029768 97 YDSR 100 (188)
Q Consensus 97 ~~~~ 100 (188)
+...
T Consensus 178 a~~~ 181 (213)
T 4f02_A 178 FKSR 181 (213)
T ss_dssp CCCH
T ss_pred cCCC
Confidence 7543
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=121.16 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=68.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEE--------EEEeC-CCCcEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS--------QVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~--------~i~~~-~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
....++|||+|||+++|+++|+++|.+||.|..| .+... ...+||||+|.+.++|++||+.|||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--
Confidence 4566899999999999999999999999998753 33322 222399999999999999999999999999
Q ss_pred ceeEEEEeeccCCc
Q 029768 88 SRSYVRVREYDSRR 101 (188)
Q Consensus 88 ~~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 120 --~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 --KPMVVQFARSAR 131 (143)
T ss_dssp --EECEEEECCCSC
T ss_pred --cEEEEEECCCCC
Confidence 799999886654
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=5.8e-17 Score=129.41 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=75.2
Q ss_pred CCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 11 GSRGVSRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 11 g~~~~~~~~~~~v~V~nLp~-~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+..+++.....+|||+|||+ ++++++|+++|++||+|..|.|+.+..+ ||||+|.+.++|++||+.|||..|.|
T Consensus 25 ~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g-~afV~F~~~~~A~~Ai~~l~g~~~~g---- 99 (229)
T 2adc_A 25 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHG---- 99 (229)
T ss_dssp CCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSC-CEEEEESCHHHHHHHHHHHTTCBCSS----
T ss_pred CCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEECCHHHHHHHHHHhCCCeECC----
Confidence 33445556789999999999 9999999999999999999999988755 99999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 029768 90 SYVRVREYDSR 100 (188)
Q Consensus 90 r~I~V~~~~~~ 100 (188)
+.|.|......
T Consensus 100 ~~l~v~~a~~~ 110 (229)
T 2adc_A 100 KPIRITLSKHQ 110 (229)
T ss_dssp SBCEEECCSCC
T ss_pred eEEEEEEecCc
Confidence 69999876543
No 159
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-18 Score=125.12 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeE--------EEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~--------~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
....+|||+|||+++++++|+++|++||.|.. |.|+.++.+ +||||+|++.++|++||+.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 888877542 299999999999999999999999999
Q ss_pred ccceeEEEEeeccCCc
Q 029768 86 AFSRSYVRVREYDSRR 101 (188)
Q Consensus 86 ~~~~r~I~V~~~~~~r 101 (188)
+.|.|..+....
T Consensus 85 ----~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 ----NPIKVSFATRRA 96 (116)
Confidence 699998876654
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.3e-16 Score=118.17 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
......+|||+|||+.+++++|+++|++||.|..+.++.+..++ ||||+|.+.++|++||+.|||..|+| +.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 158 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RP 158 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC----cE
Confidence 44567899999999999999999999999999999999885432 99999999999999999999999999 79
Q ss_pred EEEeecc
Q 029768 92 VRVREYD 98 (188)
Q Consensus 92 I~V~~~~ 98 (188)
|.|..+.
T Consensus 159 i~v~~a~ 165 (166)
T 3md3_A 159 LRINWAA 165 (166)
T ss_dssp CEEEESC
T ss_pred EEEEecC
Confidence 9998764
No 161
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=2.7e-17 Score=115.45 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=67.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
+....++|||+|||+++++++|+++|++||.|..|.|+.+..+ +||||+|++.++|++||+ |+..|+| +.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g----~~l 78 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG----KKL 78 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT----EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC----EEE
Confidence 3455689999999999999999999999999999999998743 299999999999999997 8899999 588
Q ss_pred EEeecc
Q 029768 93 RVREYD 98 (188)
Q Consensus 93 ~V~~~~ 98 (188)
.|....
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 876554
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=2.6e-16 Score=118.01 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
.++|||+|||+++++++|+++|++||+|..+.|+.+..+ +||||+|.+.++|+.||+.|||..|.| +.|.|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT----KTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC----ceEEEE
Confidence 578999999999999999999999999999999998743 299999999999999999999999999 699998
Q ss_pred eccC
Q 029768 96 EYDS 99 (188)
Q Consensus 96 ~~~~ 99 (188)
....
T Consensus 78 ~~~~ 81 (167)
T 1fxl_A 78 YARP 81 (167)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7654
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.3e-17 Score=115.59 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=54.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-------cEEEEEeCCHHHHHHHHHHcc
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-------~~afV~F~~~eda~~Ai~~ln 79 (188)
....++|||+|||+++++++|+++|++||+|. +.++.+..+ +||||+|++.++|++||+.|+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 45668999999999999999999999999999 777765432 399999999999999999983
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2.2e-16 Score=118.79 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
+..+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|.+.++|++||+.|||..|.| +.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN----KRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC----cEEEE
Confidence 4589999999999999999999999999999999887643 299999999999999999999999999 69999
Q ss_pred eeccCC
Q 029768 95 REYDSR 100 (188)
Q Consensus 95 ~~~~~~ 100 (188)
......
T Consensus 78 ~~~~~~ 83 (168)
T 1b7f_A 78 SYARPG 83 (168)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 876543
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=4.9e-16 Score=121.58 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+| +.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g----~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG----QYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS----SBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC----cEEE
Confidence 34579999999999999999999999999999999988543 299999999999999999999999999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99876553
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.3e-16 Score=115.80 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=67.7
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCC----HHH----HHHHHH--Hcccce
Q 029768 21 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTS----YDD----MKYAIR--KLDRSE 82 (188)
Q Consensus 21 ~~v~V~nL----p~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~----~ed----a~~Ai~--~lng~~ 82 (188)
.+|||+|| |+.|++++|+++|++||+|..|.++.|+.++ ||||+|.+ +++ |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999885 99999996 433 889998 789999
Q ss_pred eccccceeEEEEeeccCC
Q 029768 83 FRNAFSRSYVRVREYDSR 100 (188)
Q Consensus 83 l~g~~~~r~I~V~~~~~~ 100 (188)
|+| +.|+|..++..
T Consensus 83 I~G----r~irV~ln~~g 96 (136)
T 2j8a_A 83 IMG----FKFEVILNKHS 96 (136)
T ss_dssp ETT----EEEEEEECCTT
T ss_pred ecC----cEEEEEECccc
Confidence 999 79999877654
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-16 Score=117.44 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=68.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
.+|||+|||+++++++|+++|++||+|..|.|+.++.+. ||||+|.+.++|++||+.|||..|.| +.|.|...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g----~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN----NIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC----CeeEEEEc
Confidence 379999999999999999999999999999999887542 99999999999999999999999999 69999876
Q ss_pred cCC
Q 029768 98 DSR 100 (188)
Q Consensus 98 ~~~ 100 (188)
...
T Consensus 77 ~~~ 79 (166)
T 3md3_A 77 FQS 79 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 168
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=4.1e-16 Score=117.91 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|++||+|..+.|+.+..+ +||||+|++.++|++|++.|||..|+| +.|.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 167 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLL 167 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC----eEEE
Confidence 44789999999999999999999999999999999998633 299999999999999999999999999 6999
Q ss_pred Eeec
Q 029768 94 VREY 97 (188)
Q Consensus 94 V~~~ 97 (188)
|..+
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9764
No 169
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=6.7e-16 Score=119.26 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|++||.|..|.|+.+..+ +||||+|.+.++|++||+.|||..|+| +.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 56789999999999999999999999999999999988632 299999999999999999999999999 7999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 188 v~~a~~~~ 195 (198)
T 2yh0_A 188 VQRASVGA 195 (198)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99876554
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=6.8e-16 Score=119.05 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
+......+|||+|||+++|+++|+++|++||+|..|.|+.+..++ ||||+|.+.++|++||+. ++..|.| +
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g----~ 82 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG----R 82 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC----E
Confidence 344567899999999999999999999999999999999986532 999999999999999975 8999999 6
Q ss_pred EEEEeeccC
Q 029768 91 YVRVREYDS 99 (188)
Q Consensus 91 ~I~V~~~~~ 99 (188)
.|.|.....
T Consensus 83 ~l~v~~~~~ 91 (196)
T 1l3k_A 83 VVEPKRAVS 91 (196)
T ss_dssp ECEEEECCC
T ss_pred EeeeecccC
Confidence 899887644
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=9.3e-16 Score=118.27 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+++++++|+++|++||.|..|.|+.+..+ +||||+|++.++|++||+. ++..|+| +.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G----~~i~ 176 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG----HNCE 176 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT----EECE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC----EEEE
Confidence 34589999999999999999999999999999999988643 2999999999999999975 8999999 6999
Q ss_pred EeeccCCc
Q 029768 94 VREYDSRR 101 (188)
Q Consensus 94 V~~~~~~r 101 (188)
|..+....
T Consensus 177 v~~a~~k~ 184 (196)
T 1l3k_A 177 VRKALSKQ 184 (196)
T ss_dssp EEECC---
T ss_pred EEecCChh
Confidence 98776554
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=9.6e-16 Score=125.20 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec-cccceeEEEEeec
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREY 97 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~-g~~~~r~I~V~~~ 97 (188)
...+|||+|||+.+++++|+++|++||.|..|.|+.+..+ ||||+|.+.++|++||+.|||..|. | +.|+|...
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD-IAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCc-EEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEe
Confidence 4578999999999999999999999999999999987744 9999999999999999999999999 8 69999876
Q ss_pred c
Q 029768 98 D 98 (188)
Q Consensus 98 ~ 98 (188)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 4
No 173
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=3.4e-16 Score=126.59 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCCCCCCCcEEEEeCCCCCC---------CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccccee
Q 029768 13 RGVSRRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~~---------t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.++......+|||+||++.+ ++++|+++|++||+|+.|.|+.++. ||||+|.+.++|+.||+.|||..|
T Consensus 127 ~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG--~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 127 IGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKN--CGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp ----CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGT--EEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCC--EEEEEeCCHHHHHHHHHHhCCCEE
Confidence 34456678899999999998 7999999999999999999987654 999999999999999999999999
Q ss_pred ------------ccccceeEEEEeeccCC
Q 029768 84 ------------RNAFSRSYVRVREYDSR 100 (188)
Q Consensus 84 ------------~g~~~~r~I~V~~~~~~ 100 (188)
.| +.|.|..+...
T Consensus 205 ~~~~~~e~~~~~~g----r~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREG----TGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGS----CCCEEEECC--
T ss_pred eccccccccccCCC----CEEEEEEccCC
Confidence 67 69999987654
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1e-15 Score=115.74 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
....+|||+|||+.+++++|+++|++||+|..+.|+.+..+. ||||+|++.++|++||+.|||..+.+. ..++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG-CSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT-CSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC-CCCCeEE
Confidence 356899999999999999999999999999999999986643 999999999999999999999887631 0158888
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
..+
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=6.7e-16 Score=120.82 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..++|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|.+.++|++||+.||+..|.| +.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g----~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG----RNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-----CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC----eeEEE
Confidence 3479999999999999999999999999999999877532 399999999999999999999999999 68888
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
...
T Consensus 103 ~~~ 105 (216)
T 2qfj_A 103 GRP 105 (216)
T ss_dssp ECC
T ss_pred ecC
Confidence 654
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=7.1e-16 Score=116.04 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
...+|||+|||+.+++++|+++|++||+|..+.|+.+..+ +||||+|.+.++|++||+ ||+..|+| +.|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD----RKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS----SCEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC----eEEEE
Confidence 3568999999999999999999999999999999887543 299999999999999997 89999999 69999
Q ss_pred eeccC
Q 029768 95 REYDS 99 (188)
Q Consensus 95 ~~~~~ 99 (188)
..+.+
T Consensus 161 ~~a~p 165 (167)
T 2cjk_A 161 KRAEP 165 (167)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 87754
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=5.1e-16 Score=120.52 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=69.8
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeecc
Q 029768 20 DYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 20 ~~~v~V~nLp~-~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~ 98 (188)
..+|||+|||+ ++++++|+++|++||.|..|.|+.+..+ ||||+|.+.++|++||+.|||..|.| +.|.|....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~g----~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHG----KPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSS-CCEEECTTTHHHHHHHHHHTTCCCSS----CCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCeecC----eEEEEEEec
Confidence 57999999999 9999999999999999999999988755 99999999999999999999999999 699998765
Q ss_pred CC
Q 029768 99 SR 100 (188)
Q Consensus 99 ~~ 100 (188)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=8e-16 Score=121.49 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCe--eEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i--~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
...+|||+|||+++++++|+++|++||.| ..+.|+.+... +||||+|++.++|.+||..|||.+|.|.....+|.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 35689999999999999999999999999 88888876432 399999999999999999999999999765667777
Q ss_pred ee
Q 029768 95 RE 96 (188)
Q Consensus 95 ~~ 96 (188)
+.
T Consensus 202 k~ 203 (205)
T 3tyt_A 202 KL 203 (205)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.8e-15 Score=114.30 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC------cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~------~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
..++|||+|||+++++++|+++|++||+|..|.|+.+..+ +||||+|.+.++|++||+.||+..+.+.. ...|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM-HHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC-SSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC-ccce
Confidence 4579999999999999999999999999999999988654 29999999999999999999998876321 1466
Q ss_pred EEeeccC
Q 029768 93 RVREYDS 99 (188)
Q Consensus 93 ~V~~~~~ 99 (188)
.|.....
T Consensus 81 ~~~~~~~ 87 (175)
T 3nmr_A 81 QMKPADS 87 (175)
T ss_dssp EEEECGG
T ss_pred EEccccc
Confidence 6665443
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=3.4e-15 Score=112.25 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=68.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
.....+|||+|||+.+++++|+++|++||+|..+.|+.+..+ +||||+|.+.++|++|++.|||..|.|. .++|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~~~l 163 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG--SQPL 163 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC--SSCC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC--CeEE
Confidence 345689999999999999999999999999999999988632 2999999999999999999999999772 1477
Q ss_pred EEee
Q 029768 93 RVRE 96 (188)
Q Consensus 93 ~V~~ 96 (188)
.|..
T Consensus 164 ~V~~ 167 (168)
T 1b7f_A 164 SVRL 167 (168)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 181
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-14 Score=104.02 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=66.1
Q ss_pred CCCCcEEEEeCCCCCCC-----------HHHHHHHhhcCCCeeEEEEEeCCC-CcEEEEEeCCHHHHHHHHHHcccceec
Q 029768 17 RRSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t-----------~~dL~~~F~~~G~i~~~~i~~~~~-~~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
......|+|.||..... +++|+++|++||+|..|.| .+.. .+||||+|++.++|++||+.|||..|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34568899999944432 5899999999999999966 4433 349999999999999999999999999
Q ss_pred cccceeEEEEeeccCCc
Q 029768 85 NAFSRSYVRVREYDSRR 101 (188)
Q Consensus 85 g~~~~r~I~V~~~~~~r 101 (188)
| +.|.|..+....
T Consensus 91 g----r~l~v~~a~~~~ 103 (112)
T 2dit_A 91 G----RQITAQAWDGTT 103 (112)
T ss_dssp T----EECEEEECCSCC
T ss_pred C----cEEEEEEeCCCC
Confidence 9 799999876543
No 182
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=2.8e-15 Score=112.27 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|++||.|..+.++.+..+ +||||+|.+.++|++|++.|||..|.|.. .+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--~~i~ 163 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--EPIT 163 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS--SCCE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc--cceE
Confidence 45689999999999999999999999999999999987633 29999999999999999999999999941 2366
Q ss_pred Eee
Q 029768 94 VRE 96 (188)
Q Consensus 94 V~~ 96 (188)
|..
T Consensus 164 v~~ 166 (167)
T 1fxl_A 164 VKF 166 (167)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=3.1e-15 Score=117.13 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=65.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
..+|||+|||+++++++|+++|++||+|..|.|+.+..+. ||||+|++.++|++||+.+ +.+|+| +.|.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~G----r~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKE----TDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETT----EECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECC----EEEEEEE
Confidence 3789999999999999999999999999999999876542 9999999999999999765 569999 6999876
Q ss_pred cc
Q 029768 97 YD 98 (188)
Q Consensus 97 ~~ 98 (188)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 43
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.9e-15 Score=122.31 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=70.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~----~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.....++|||+|||+++++++|+ ++|.+||+|..|.|+.+... +||||+|.+.++|++||+.|||..|.| +
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----K 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC----c
Confidence 44667899999999999999977 89999999999988864332 399999999999999999999999999 6
Q ss_pred EEEEeeccC
Q 029768 91 YVRVREYDS 99 (188)
Q Consensus 91 ~I~V~~~~~ 99 (188)
.|.|.....
T Consensus 81 ~l~v~~a~~ 89 (282)
T 3pgw_A 81 PMRIQYAKT 89 (282)
T ss_pred EEEEEEecc
Confidence 999987644
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=1.6e-15 Score=115.26 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=66.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
.....+|||+|||+.+++++|+++|++||.|..+ .......+||||+|.+.++|++||+.|||..|.| +.|.|..
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT----EEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEe
Confidence 3466899999999999999999999999999876 1111222399999999999999999999999999 7999987
Q ss_pred ccC
Q 029768 97 YDS 99 (188)
Q Consensus 97 ~~~ 99 (188)
+.+
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 754
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=2.8e-15 Score=121.91 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
....++|||+|||+++|+++|+++|++||.|..|.|..++. ||||+|.+.++|+.||+.|||..|.| +.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg--~afV~f~~~~~A~~A~~~l~g~~i~g----~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRG--FGFIRLESRTLAEIAKAELDGTILKS----RPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTT--EEEEECSSHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCc--EEEEEECCHHHHHHHHHHcCCcEECC----ceeEeee
Confidence 35568999999999999999999999999999999976643 99999999999999999999999999 6888876
Q ss_pred cc
Q 029768 97 YD 98 (188)
Q Consensus 97 ~~ 98 (188)
..
T Consensus 93 a~ 94 (261)
T 3sde_A 93 AT 94 (261)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=4.2e-15 Score=118.54 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec-cccceeEEEEe
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 95 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~-g~~~~r~I~V~ 95 (188)
....+|||+|||+.+++++|+++|.+|| +|..|.|+.+..+ ||||+|++.++|++||+.|||..|. | +.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g-~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK-MALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT-CEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc-EEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEE
Confidence 3468999999999999999999999999 9999998664444 9999999999999999999999999 8 699998
Q ss_pred eccC
Q 029768 96 EYDS 99 (188)
Q Consensus 96 ~~~~ 99 (188)
..+.
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 7653
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=116.30 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec-cccceeEEEEe
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 95 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~-g~~~~r~I~V~ 95 (188)
....+|||+|||+.+++++|+++|.+|| +|..|.|+.+..+ ||||+|++.++|++||+.|||..|. | +.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK-MALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSS-CEEEECSSHHHHHHHHHHHTSSCCSSC----CSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCC----CeEEEE
Confidence 3478999999999999999999999999 9999998765544 9999999999999999999999999 7 688888
Q ss_pred eccC
Q 029768 96 EYDS 99 (188)
Q Consensus 96 ~~~~ 99 (188)
..+.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 7643
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=6.8e-15 Score=111.16 Aligned_cols=74 Identities=20% Similarity=0.349 Sum_probs=65.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~----G-------~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
...+|||+|||+++|+++|+++|++| | .|..+.+..++. ||||+|.+.++|++|| .|||..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g--~afV~f~~~~~A~~A~-~~~~~~~~g-- 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTT--EEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCC--EEEEEeCCHHHHHHHH-HhCCcEecC--
Confidence 45799999999999999999999999 7 778777766543 9999999999999999 899999999
Q ss_pred ceeEEEEeeccC
Q 029768 88 SRSYVRVREYDS 99 (188)
Q Consensus 88 ~~r~I~V~~~~~ 99 (188)
+.|.|.....
T Consensus 78 --~~i~v~~~~~ 87 (172)
T 2g4b_A 78 --QSLKIRRPHD 87 (172)
T ss_dssp --EECEEECCSS
T ss_pred --ceeeecCCcc
Confidence 6999986543
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=6.3e-15 Score=110.82 Aligned_cols=73 Identities=10% Similarity=0.247 Sum_probs=63.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC----cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~----~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..++|||+|||+++|+++|+++|++||+|..|.|+.+..+ +||||+|.+.++|+.||+. +..|+| +.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g----~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG----KVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT----EECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC----eEccc
Confidence 4579999999999999999999999999999999987542 3999999999999999985 567888 57766
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
...
T Consensus 76 ~~~ 78 (167)
T 2cjk_A 76 KRA 78 (167)
T ss_dssp EEC
T ss_pred ccc
Confidence 544
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=2.2e-14 Score=117.19 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCC-CHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 16 SRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~-t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
......+|||+|||+.+ ++++|+++|++||.|..|.|+.+..+. ||||+|.+.++|.+||+.|||..|.| +.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 255 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG----SH 255 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC----eE
Confidence 34567899999999995 999999999999999999999886543 99999999999999999999999999 79
Q ss_pred EEEeeccCCc
Q 029768 92 VRVREYDSRR 101 (188)
Q Consensus 92 I~V~~~~~~r 101 (188)
|.|.......
T Consensus 256 l~v~~a~~~~ 265 (284)
T 3smz_A 256 LRVSFCAPGP 265 (284)
T ss_dssp CEEEECCSSS
T ss_pred EEEEEecCCC
Confidence 9998876543
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=4e-14 Score=100.61 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCC-----CCCHHHHHHHhhcCCCeeEEEEEeCCC-----CcEEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 19 SDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 19 ~~~~v~V~nLp~-----~~t~~dL~~~F~~~G~i~~~~i~~~~~-----~~~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
....|+|.||.. +.+++||+++|++||+|..|.|+.++. .+||||+|++.++|++|++.|||..|+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 456899999963 247899999999999999999998743 2399999999999999999999999999
Q ss_pred eeEEEEeeccC
Q 029768 89 RSYVRVREYDS 99 (188)
Q Consensus 89 ~r~I~V~~~~~ 99 (188)
+.|.|.....
T Consensus 84 -r~i~v~~a~~ 93 (105)
T 2pe8_A 84 -RVVKACFYNL 93 (105)
T ss_dssp -EECEEEECCH
T ss_pred -cEEEEEEcCH
Confidence 7999987643
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=1.4e-14 Score=111.83 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=64.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 87 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~----G-------~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~ 87 (188)
...+|||+|||+++++++|+++|++| | .|..+.+...+. ||||+|.+.++|++|| .|||..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g--~afV~F~~~~~A~~Al-~l~g~~~~g-- 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTT--EEEEEESCSHHHHHHG-GGTTEEETT--
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCC--EEEEEeCCHHHHHHHH-HhcCCEEcC--
Confidence 45899999999999999999999999 5 677776655433 9999999999999999 899999999
Q ss_pred ceeEEEEeeccCC
Q 029768 88 SRSYVRVREYDSR 100 (188)
Q Consensus 88 ~~r~I~V~~~~~~ 100 (188)
+.|.|......
T Consensus 78 --~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 --QSLKIRRPHDY 88 (198)
T ss_dssp --EEEEEECCCCC
T ss_pred --ceEEEeCCCCC
Confidence 69999865443
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=1.7e-14 Score=118.34 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=66.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
.....+|||+|||+++|+++|+++|++||+|..|.|+.+..+ +||||+|.+.++|++|| +|||..|.| +.|.|
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g----~~i~v 112 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQ----NEIIV 112 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCC----cEEEE
Confidence 456789999999999999999999999999999999987654 39999999999999999 599999999 68888
Q ss_pred eec
Q 029768 95 REY 97 (188)
Q Consensus 95 ~~~ 97 (188)
...
T Consensus 113 ~~~ 115 (292)
T 2ghp_A 113 SHL 115 (292)
T ss_dssp EEC
T ss_pred EEC
Confidence 754
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=4.5e-15 Score=112.74 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEE---EEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ---VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~---i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
+.....++|||+|||+++++++|+++|.+||.|..+. .......+||||+|.+.++|++|| +|||..|.| +.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~ 82 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG----NE 82 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETT----EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCC----eE
Confidence 4567789999999999999999999999998654321 122222239999999999999999 599999999 79
Q ss_pred EEEeeccCC
Q 029768 92 VRVREYDSR 100 (188)
Q Consensus 92 I~V~~~~~~ 100 (188)
|.|......
T Consensus 83 l~v~~~~~~ 91 (175)
T 1fje_B 83 IKLEKPKGR 91 (175)
T ss_dssp EEEECCCCS
T ss_pred EEEecCCCc
Confidence 999876543
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=4.4e-14 Score=115.40 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----EEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
....+|||+|||+.+++++|+++|.+||.|..+.|+.+..++ ||||+|.+.++|+.||+.|||..|+| +.|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g----~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP----RTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 356799999999999999999999999999999999876432 99999999999999999999999999 6999
Q ss_pred EeeccCC
Q 029768 94 VREYDSR 100 (188)
Q Consensus 94 V~~~~~~ 100 (188)
|......
T Consensus 169 v~~a~~~ 175 (284)
T 3smz_A 169 VHWTDAG 175 (284)
T ss_dssp EEECCGG
T ss_pred EEECCCC
Confidence 9877554
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=2e-14 Score=117.90 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=70.3
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCC--C---cEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 17 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG--G---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~--~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.....+|||+|||+. +++++|+++|++||.|..|.|+.+.. + +||||+|.+.++|++|| .|||..|.| +
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----~ 281 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN----R 281 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT----E
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC----c
Confidence 346689999999999 99999999999999999999988765 2 39999999999999999 999999999 7
Q ss_pred EEEEeeccC
Q 029768 91 YVRVREYDS 99 (188)
Q Consensus 91 ~I~V~~~~~ 99 (188)
.|.|..+..
T Consensus 282 ~i~V~~a~~ 290 (292)
T 2ghp_A 282 EISVSLADK 290 (292)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEecC
Confidence 999987754
No 198
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.2e-14 Score=101.67 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCCCCCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC-HHHHHHHHHHcc--cceeccccc
Q 029768 13 RGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNAFS 88 (188)
Q Consensus 13 ~~~~~~~~~~v~V~nLp~~-~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~-~eda~~Ai~~ln--g~~l~g~~~ 88 (188)
+.-.-..++.|||+||+++ ++.++|+++|++||+|.+|+++.+.. +|||+|.+ +++|+.||++|| +.+|+|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~-- 86 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK-- 86 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS--
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc--
Confidence 3345678999999999999 99999999999999999999998877 79999999 899999999995 7788884
Q ss_pred eeEEEEe
Q 029768 89 RSYVRVR 95 (188)
Q Consensus 89 ~r~I~V~ 95 (188)
.++|+
T Consensus 87 --~~~~e 91 (121)
T 1owx_A 87 --EVTWE 91 (121)
T ss_dssp --SEEEE
T ss_pred --EEEEE
Confidence 55553
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=6.3e-14 Score=113.86 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=67.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
...+|||+|||+.+|+++|+++|.+||.|..|.|+.+..+. ||||+|.+.++|.+||+.||+..+......++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 45799999999999999999999999999999999886542 999999999999999999966544411112688888
Q ss_pred eccCC
Q 029768 96 EYDSR 100 (188)
Q Consensus 96 ~~~~~ 100 (188)
.....
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 66543
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.4e-13 Score=93.62 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=61.1
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 20 DYRVLVTGLP-------SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 20 ~~~v~V~nLp-------~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
..+|.|.... .++++++|+++|++||+|..|.|+....+ ||||+|++.++|+.||+.+++ +.| +.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rG-faFVeF~~~~~A~~Ai~~~~~--~~g----~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPG-TAVVEFATVKAAELAVQNEVG--LVD----NPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSS-EEEEEESCHHHHHHHHHTCCB--CSS----SBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCC-EEEEEECCHHHHHHHHHhcCC--CCC----CeE
Confidence 4577777654 45899999999999999999999843333 999999999999999998655 567 589
Q ss_pred EEeeccCCc
Q 029768 93 RVREYDSRR 101 (188)
Q Consensus 93 ~V~~~~~~r 101 (188)
+|.......
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 998876553
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=6.1e-14 Score=118.85 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec
Q 029768 17 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 17 ~~~~~~v~V~n--Lp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
.....+|||+| |++.+|+++|+++|++||+|..|.|..++ +||||+|++.++|++||+.|||+++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k--gfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK--PYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC--SEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC--CEEEEEECCHHHHHHHHHHhCCCccc
Confidence 44567899999 58999999999999999999988775533 39999999999999999999999984
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.4e-14 Score=101.48 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=59.6
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCCeeEEEEEeCCCC---cEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 25 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 25 V~nLp~~~t~~dL~~~F------------~~~G~i~~~~i~~~~~~---~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
+.||++.+++++|+++| ++||+|..|.|+.+..+ +||||+|++.++|++|++.|||..|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT----
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC----
Confidence 67788888888888777 99999999999987643 399999999999999999999999999
Q ss_pred eEEEEeec
Q 029768 90 SYVRVREY 97 (188)
Q Consensus 90 r~I~V~~~ 97 (188)
+.|.|...
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 78888753
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=3.4e-13 Score=95.72 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=63.1
Q ss_pred CcEEEEeCC--CCCCC--------HHHHHHHhhcCCCeeEEEEEeCCCC------cEEEEEeCCHHHHHHHHHHccccee
Q 029768 20 DYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 20 ~~~v~V~nL--p~~~t--------~~dL~~~F~~~G~i~~~~i~~~~~~------~~afV~F~~~eda~~Ai~~lng~~l 83 (188)
...|.|.|+ |..+. ++||+++|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 467888998 44443 4789999999999999999887532 3999999999999999999999999
Q ss_pred ccccceeEEEEeecc
Q 029768 84 RNAFSRSYVRVREYD 98 (188)
Q Consensus 84 ~g~~~~r~I~V~~~~ 98 (188)
+| +.|.|....
T Consensus 85 ~G----R~i~v~~~~ 95 (105)
T 3v4m_A 85 AN----RVVVTKYCD 95 (105)
T ss_dssp TT----EECEEEEEC
T ss_pred CC----CEEEEEEeC
Confidence 99 799997653
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=7.5e-13 Score=95.97 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCcEEEEeCCCC--C---CCHHHHHHHhhcCCCeeEEEEEeCCCC--------cEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 19 SDYRVLVTGLPS--S---ASWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 19 ~~~~v~V~nLp~--~---~t~~dL~~~F~~~G~i~~~~i~~~~~~--------~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
....|+|.||-. + -.++||++.|++||+|..|.|+.+..+ +||||+|++.++|++||+.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999832 2 347899999999999999999987542 399999999999999999999999999
Q ss_pred ccceeEEEEeecc
Q 029768 86 AFSRSYVRVREYD 98 (188)
Q Consensus 86 ~~~~r~I~V~~~~ 98 (188)
+.|.|....
T Consensus 99 ----R~i~v~~~~ 107 (118)
T 3ue2_A 99 ----RKVVAEVYD 107 (118)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEEcC
Confidence 799987653
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.5e-12 Score=91.85 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCcEEEEeCCCC--CC--------CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 19 SDYRVLVTGLPS--SA--------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 19 ~~~~v~V~nLp~--~~--------t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
....|.|.|+=. +. .++||+++|++||+|..|.|..+...+||||+|++.++|++||+.|||..|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--- 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG--- 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 345688888722 21 24578899999999999998776544499999999999999999999999999
Q ss_pred eeEEEEeec
Q 029768 89 RSYVRVREY 97 (188)
Q Consensus 89 ~r~I~V~~~ 97 (188)
+.|.|...
T Consensus 83 -R~i~v~~~ 90 (114)
T 3s6e_A 83 -KMITAAYV 90 (114)
T ss_dssp -EECEEEEE
T ss_pred -EEEEEEEE
Confidence 79999754
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=8.6e-12 Score=85.89 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCcEEEEeCCCC----CCCH----HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecccccee
Q 029768 19 SDYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 90 (188)
Q Consensus 19 ~~~~v~V~nLp~----~~t~----~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r 90 (188)
.+.+|+|.-++. +.-. .+|.+.|.+||+|..++|+.+ .+||+|.+.++|.+||+ |||.+++| +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G----r 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN----R 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT----E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC----e
Confidence 346677776652 2333 679999999999999999987 59999999999999997 99999999 7
Q ss_pred EEEEeeccC
Q 029768 91 YVRVREYDS 99 (188)
Q Consensus 91 ~I~V~~~~~ 99 (188)
.|+|....+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999987754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=5.8e-11 Score=82.21 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=59.7
Q ss_pred CCcEEEEeCCCCC-----CCH----HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccce
Q 029768 19 SDYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 89 (188)
Q Consensus 19 ~~~~v~V~nLp~~-----~t~----~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~ 89 (188)
.+.+|+|.-++.. .-. .+|.+.|.+||+|..++|+.+ -+||+|.+.++|.+||+ |||.+|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G---- 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG---- 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT----
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC----
Confidence 4578889888643 222 568999999999999999988 49999999999999998 99999999
Q ss_pred eEEEEeec
Q 029768 90 SYVRVREY 97 (188)
Q Consensus 90 r~I~V~~~ 97 (188)
+.|+|.+.
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 79999865
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=8.5e-09 Score=81.37 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=54.3
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEeCCCC--------cEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeecc
Q 029768 32 ASWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 98 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~i~~~~i~~~~~~--------~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~~ 98 (188)
-.+++|.+.|++||+|..+.|..+..+ +++||+|.+.++|++||+.|||..|.| +.|.|....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEcC
Confidence 456789999999999999999855332 299999999999999999999999999 689887543
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=5.5e-08 Score=68.84 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=66.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcC-----CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeE
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 91 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~-----G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~ 91 (188)
.....+|-+=|||.++++..|..|+..+ |.|+.+.+..|.. -|+|+|++...|-+|.-.|||.+|.| ++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eE
Confidence 3457788999999999999999999999 9999998888877 59999999999999998999999999 78
Q ss_pred EEEe
Q 029768 92 VRVR 95 (188)
Q Consensus 92 I~V~ 95 (188)
|++-
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8874
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.22 E-value=1.4e-05 Score=54.85 Aligned_cols=68 Identities=13% Similarity=0.340 Sum_probs=58.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc------EEEEEeCCHHHHHHHHHHcccceeccccc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM------TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 88 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~------~afV~F~~~eda~~Ai~~lng~~l~g~~~ 88 (188)
.+|.|.+||+++|++++.+.+....++.....+..+... -|+|.|.+.+++..-.+.+||..|.+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 589999999999999999999998888777776654321 89999999999999999999999877543
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.18 E-value=1.3e-05 Score=55.39 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=47.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
+.....+.++| ++|.++...||.++|+.||.|. |..+.| + -|||.|.+++.|..|++.++
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD--T-sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--T-SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET--T-EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC--C-eEEEEecCHHHHHHHHHhcc
Confidence 33445567777 9999999999999999999654 333433 2 79999999999999998764
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.5e-05 Score=54.57 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC-----CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 93 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~-----G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~ 93 (188)
-+.+|.|.|||+.+.++.|+.+|+.- |+|..++... . -|+|+|.+.+.|+..|++ ....|++ ..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~----~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHG----AQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSS----SBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecC----eEEE
Confidence 46799999999999999999999972 5788877654 3 799999999999999963 4678888 5888
Q ss_pred EeeccC
Q 029768 94 VREYDS 99 (188)
Q Consensus 94 V~~~~~ 99 (188)
|..+..
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 876543
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=2.9e-05 Score=54.40 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=58.8
Q ss_pred CcEEEEeCCCCCC-C----HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEE
Q 029768 20 DYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 94 (188)
Q Consensus 20 ~~~v~V~nLp~~~-t----~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V 94 (188)
..+|+|.||+.++ . .+.++++|..|+++........=. =..|.|.++++|.+|-..||+..|+| ..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g----~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG----KEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT----EECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC----ceeEE
Confidence 4689999998864 2 257789999999887755554322 47899999999999999999999999 58888
Q ss_pred eecc
Q 029768 95 REYD 98 (188)
Q Consensus 95 ~~~~ 98 (188)
....
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7554
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=7.6e-05 Score=53.56 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=57.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
......-|.|-++|+.. ...|..+|++||+|+.... ...+++-.|.|++..+|++||. .||..|.|. ..|=|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~---~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES---IMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT---EECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC---EEEEEE
Confidence 34557889999999996 5677788999999998765 2233499999999999999996 699999864 455554
Q ss_pred e
Q 029768 96 E 96 (188)
Q Consensus 96 ~ 96 (188)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.74 E-value=6.4e-05 Score=52.03 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=54.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc------EEEEEeCCHHHHHHHHHHcccceeccccceeEE
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM------TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 92 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~------~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I 92 (188)
-..+|.|..||+.+|++++.+.+...-++.+...+..+... -|+|.|.+.+++..-.+.++|..|.+...+...
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34689999999999999988777665444333222222111 789999999999999999999998776543333
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.73 E-value=4.7e-05 Score=52.78 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=44.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
+.++| ++|.++...||.++|+.||.|. |..+.| + -|||.|.+++.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD--T-sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--T-SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET--T-EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC--C-eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999543 444444 3 79999999999999998764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.15 E-value=0.00034 Score=50.88 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEE-EEe--------------CC---CCcEEEEEeCCHHHHHHHHHHcc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-VFR--------------DR---GGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~-i~~--------------~~---~~~~afV~F~~~eda~~Ai~~ln 79 (188)
..+..|.|-+.|+...+.-| ++|++||.|+.-. +.. -+ .+++-.|.|++..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 35667889899888876655 5789999987621 110 00 12278999999999999995 79
Q ss_pred cceeccccceeEEEEee
Q 029768 80 RSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 80 g~~l~g~~~~r~I~V~~ 96 (188)
|..|.|. -|=|.+
T Consensus 83 G~ii~G~----mIGV~P 95 (132)
T 3p3d_A 83 GAVFNGV----LLGVIP 95 (132)
T ss_dssp TCEETTE----ECEEEE
T ss_pred CeEeCcE----EEEEEE
Confidence 9999994 555543
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.95 E-value=0.00042 Score=60.57 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=40.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
..|||. .|..+++.+|.++|++||+|..+.+..+.. .||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 479997 799999999999999999999887765433 499999999999887764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.32 E-value=0.022 Score=41.65 Aligned_cols=33 Identities=0% Similarity=-0.023 Sum_probs=25.3
Q ss_pred EEEEeCCCC--cEEEEEeCCHHHHHHHHHHcccce
Q 029768 50 SQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 50 ~~i~~~~~~--~~afV~F~~~eda~~Ai~~lng~~ 82 (188)
+.|+.+... +||||+|.+.++|++||+.+++..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 345555432 399999999999999999888643
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.96 E-value=0.07 Score=47.04 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
....++|+ +|..+...+|.++|+.||.|. |..+.+ + .|||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd--t-~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD--T-SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS--S-EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC--C-eEEEEECCHHHHHHHHHHHH
Confidence 34667776 999999999999999999653 333322 3 89999999999999998875
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.79 E-value=0.026 Score=41.02 Aligned_cols=36 Identities=0% Similarity=-0.064 Sum_probs=31.1
Q ss_pred cEEEEEeCCHHHHHHHHHHc-ccceeccccceeEEEEeeccC
Q 029768 59 MTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRVREYDS 99 (188)
Q Consensus 59 ~~afV~F~~~eda~~Ai~~l-ng~~l~g~~~~r~I~V~~~~~ 99 (188)
++++|+|.+.++|++||+.| ||.+|+| .|.|.....
T Consensus 14 G~~~ve~~~~~~A~~a~~~~~ng~~~~G-----~~~~~~a~~ 50 (150)
T 2i2y_A 14 GETTTEAVDAATAEKVFKQYANDNGVDG-----EWTYDDATK 50 (150)
T ss_dssp EEEEEECSSHHHHTTTHHHHHHHHTCCC-----EEEEETTTT
T ss_pred ccceeeecCHHHHHHHHHHHhcCCCCCC-----ceecccccC
Confidence 38999999999999999999 9999999 677775543
No 222
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=92.38 E-value=1.6 Score=29.61 Aligned_cols=59 Identities=14% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
...|-|-|-|+|..+-..++.-.....|---+|+.+.. -|.|.|.+.++-.-||++|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHHHh
Confidence 46788999999999999999888888887777877644 599999999999999987643
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=90.59 E-value=0.56 Score=29.97 Aligned_cols=67 Identities=7% Similarity=0.184 Sum_probs=42.4
Q ss_pred EEEEe-CCCCCCCHHHHHHHhhcCC-----CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEe
Q 029768 22 RVLVT-GLPSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 95 (188)
Q Consensus 22 ~v~V~-nLp~~~t~~dL~~~F~~~G-----~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~ 95 (188)
+|||. +--..++..+|..++..-+ .|-.++|..+ |.||+.... .++.+++.|++..+.| +.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g----~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKG----KQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC-------CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcC----ceEEEE
Confidence 45663 2244588888888887654 3556666544 899998764 4778888999999999 577776
Q ss_pred ec
Q 029768 96 EY 97 (188)
Q Consensus 96 ~~ 97 (188)
..
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 224
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=82.93 E-value=1 Score=30.85 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=46.0
Q ss_pred EeCCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEeec
Q 029768 25 VTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 25 V~nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~~ 97 (188)
|-.++..+..+||+.... .||.-+.+....+ -..|-..+++|+++||+.|+-..-.-. .+|-+...
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~----EllIpl~sQeDLDkaIellDrss~~kS---LrIlL~~~ 87 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN----ELVIPLTTQDDLDKAVELLDRSIHMKS---LKILLVIN 87 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS----SSCEECCSHHHHHHHHHHHHHCSSCCS---EEEEEEEC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc----eEEEeccCHHHHHHHHHHHccCCcccc---eEEEEecC
Confidence 335677899999886665 4888766665522 478999999999999998877643321 45544443
No 225
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.81 E-value=6.3 Score=26.13 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=41.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~l 78 (188)
.|+-......+..+|++.+++ |+ +|..+..+.-+.+ +-|+|.+..-.+|.+...++
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 445557888999999999987 66 5777776665443 37999999877777766554
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=79.20 E-value=4.9 Score=24.57 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
..+.|.++.-.--...|+..+.+ -.|..+.+..... -+.|+|.+.+++..||+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~--~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEA--VVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEE--EEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCC--EEEEEECCHHHHHHHHHHc
Confidence 56889999888888999999999 7888777655433 6788888777888888764
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=77.85 E-value=7.8 Score=29.09 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=37.7
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHh--hcCCCeeEEEEEeCCCCc--EEEEEeCC-HHHHHHHHH
Q 029768 21 YRVLVTGLPS-S--------ASWQDLKDHM--RRAGDVCFSQVFRDRGGM--TGIVDYTS-YDDMKYAIR 76 (188)
Q Consensus 21 ~~v~V~nLp~-~--------~t~~dL~~~F--~~~G~i~~~~i~~~~~~~--~afV~F~~-~eda~~Ai~ 76 (188)
..++|-|+|. . ...++|++.| ..|.++. |..+.+..+. +|.|+|.+ ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 3577889887 2 4568899977 8898866 4555555543 89999985 444555553
No 228
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=76.52 E-value=6.8 Score=26.50 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec
Q 029768 27 GLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
-++.-+..+||+.... .||.-..+..+.+ --.|-..+++|+++||+.|+-..-.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn----EL~iPL~~Q~DLDkAvelLDrs~~~ 89 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN----ELVIPLTTQDDLDKAVELLDRSIHM 89 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET----TEEEECCCHHHHHHHHHHHHHCSSC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc----eeEEecccHHHHHHHHHHhccCccc
Confidence 4677799999987765 4888777666643 3678899999999999987765433
No 229
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=74.22 E-value=12 Score=27.01 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=29.5
Q ss_pred HHHHhhcCCCeeEEEEEeC--CCCc-----------------EEEEEeCCHHHHHHHHH
Q 029768 37 LKDHMRRAGDVCFSQVFRD--RGGM-----------------TGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 37 L~~~F~~~G~i~~~~i~~~--~~~~-----------------~afV~F~~~eda~~Ai~ 76 (188)
..++|.+||.+..+++..+ +.++ |.+|+|.+.+..++|.+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 3468999998877766544 2121 99999999988887764
No 230
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=71.96 E-value=8 Score=25.82 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec
Q 029768 27 GLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
-++.-+..+||+.-.. .||.-..+..+.+ --.|-..+++|+++||+.|+-..-.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn----EL~iPL~~Q~DLDkAvelLDrs~~m 73 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN----ELSILLKNQDDLDKAIDILDRSSSM 73 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS----SCEEECCSHHHHHHHHHHHHHSTTT
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc----eeEEeccCHHHHHHHHHHhccCccc
Confidence 4677788899887665 4887776665533 3568899999999999987765433
No 231
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=71.20 E-value=7.3 Score=26.71 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHhh-cCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceec
Q 029768 27 GLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~-~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
-++.-+..+||+.-.. .||.-..+..+.+ --.|-..+++|+++||+.|+-..-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn----EL~IPL~~Q~DLDkAvelLDrs~~m 100 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN----ELSILLKNQDDLDKAIDILDRSSSM 100 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS----SCEEECCSHHHHHHHHHHHHHCSSC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc----eEEEecccHHHHHHHHHHhccCccc
Confidence 4677789999887665 4887777666533 3568889999999999987765433
No 232
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=70.35 E-value=15 Score=22.05 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.|+.-.--...|+..+.+.-.|..+.+..... -+.|+|. +.+++..||+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQN--RADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHC
Confidence 4577888887777788999999988888887766544 6888885 567788888764
No 233
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=68.54 E-value=12 Score=25.48 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=40.2
Q ss_pred cEEEEeCCCCCCCHHH--HHHHhhc-----C------C--CeeEEEEEeCCC-----Cc-EEEEEeCC---HHHHHHHHH
Q 029768 21 YRVLVTGLPSSASWQD--LKDHMRR-----A------G--DVCFSQVFRDRG-----GM-TGIVDYTS---YDDMKYAIR 76 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~d--L~~~F~~-----~------G--~i~~~~i~~~~~-----~~-~afV~F~~---~eda~~Ai~ 76 (188)
+.|.|-+||+...+.. ++.+|.+ | . .|..+.-..... +. --.|.|.. .|.+..|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 6788999999743333 4455433 2 2 244443332221 11 44555554 555666666
Q ss_pred HcccceeccccceeEEEEee
Q 029768 77 KLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 77 ~lng~~l~g~~~~r~I~V~~ 96 (188)
+....++.| .+|.+..
T Consensus 84 ~k~~vtykg----~pirlsa 99 (100)
T 2w7a_A 84 EKGRVTLKG----KPIRLTV 99 (100)
T ss_dssp HHCCEEETT----EEEEEEE
T ss_pred HhCceeeCC----cceeecC
Confidence 666678888 5887754
No 234
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=68.08 E-value=10 Score=27.51 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=38.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~l 78 (188)
.||-......+..+|++.+++ |+ +|..|..+.-+++. -|||.+....||.+..+++
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 344456778899999988876 55 57777766655442 7999998766666554443
No 235
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=67.71 E-value=10 Score=27.76 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=38.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCCc-EEEEEeCCHHHHHHHHHHc
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~~-~afV~F~~~eda~~Ai~~l 78 (188)
.||--+....+..+|++.+++ |+ +|..|..+.-+++. -|||.+....||.+..+++
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 344456778899999988886 56 57777766655543 7999998766666555443
No 236
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=61.35 E-value=26 Score=21.56 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=42.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
...+.|.++.-..-...|+..+.....|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQ--EATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTT--EEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 45688889988777788999999888888877755443 7888885 456677777664
No 237
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=60.85 E-value=11 Score=27.59 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=36.0
Q ss_pred EEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHH
Q 029768 24 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 24 ~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~ 77 (188)
||-.+....+..+|++.+++ |+ +|..|..+.-..+ .-|||.+....||.+..++
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 34446667888888887776 55 5777776655443 2799999877666655443
No 238
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=60.21 E-value=18 Score=23.84 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=37.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAI 75 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai 75 (188)
.|+-......+..+|++.+++ |+ +|..+..+.-+.+ +-|+|.+..-.+|.+..
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 345557888999999998886 66 6777776665543 37999998766644433
No 239
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=60.20 E-value=34 Score=22.63 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=35.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC----CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G----~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
|.+-.+|..++.++|.+.+.. |. ....+..+ |..| -+|++.+.+|++.||.-
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~-DEeG--D~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI-DEEG--DPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC-CSSS--CCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE-CCCC--CcccccCHHHHHHHHHH
Confidence 556678899999998876654 33 21222222 3333 57899999999999974
No 240
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=59.11 E-value=26 Score=27.48 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=42.7
Q ss_pred CcEEEEeCCCCCCC--HHHHHHHhhc-----CCC--------eeEEEEEeCC-----CCc-EEEEEeC---CHHHHHHHH
Q 029768 20 DYRVLVTGLPSSAS--WQDLKDHMRR-----AGD--------VCFSQVFRDR-----GGM-TGIVDYT---SYDDMKYAI 75 (188)
Q Consensus 20 ~~~v~V~nLp~~~t--~~dL~~~F~~-----~G~--------i~~~~i~~~~-----~~~-~afV~F~---~~eda~~Ai 75 (188)
-+.|.|-|||+... +..++.+|.+ |.. |..+.-.... .+. --.|.|. +.|.+.+|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36799999999876 5556666654 322 2232221111 111 3444554 555666666
Q ss_pred HHcccceeccccceeEEEEeec
Q 029768 76 RKLDRSEFRNAFSRSYVRVREY 97 (188)
Q Consensus 76 ~~lng~~l~g~~~~r~I~V~~~ 97 (188)
.+....++.| .+|.+..|
T Consensus 132 R~k~~vtykG----~pIrlsaD 149 (233)
T 2yko_A 132 REKGRVTLKG----KPIRLTVD 149 (233)
T ss_dssp HTTSCEEETT----EEEEEEEC
T ss_pred HHhcccccCC----CceEEeCC
Confidence 6666778899 58888644
No 241
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=57.67 E-value=24 Score=19.96 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=38.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC---CHHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT---SYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~---~~eda~~Ai~~l 78 (188)
.+.|.|+.-..-...|+..+.+...|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKK--SVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTT--EEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCC--EEEEEECCCCCHHHHHHHHHHc
Confidence 456677766666677888888887788777765433 6788886 456666777654
No 242
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=55.82 E-value=27 Score=20.05 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC---HHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS---YDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~---~eda~~Ai~~l 78 (188)
..+.|.|+.-..-...|+..+.+...|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALE--QAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCC--EEEEEECCCCCHHHHHHHHHHc
Confidence 3577888876666677889999888888887765543 68888874 45556666554
No 243
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=55.80 E-value=4.4 Score=27.57 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=5.1
Q ss_pred HHHHHHHHHHc
Q 029768 68 YDDMKYAIRKL 78 (188)
Q Consensus 68 ~eda~~Ai~~l 78 (188)
.++.+.|.+.|
T Consensus 58 f~~~~~a~~Ai 68 (115)
T 3beg_B 58 FVRKEDMTYAV 68 (115)
T ss_dssp ESSHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 34445554443
No 244
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=55.59 E-value=28 Score=20.11 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=39.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+.+.-.|..+.+-.... .+.|+|. +.+++..+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEG--TVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 4577888876666677888888887788777765443 6788876 356667777654
No 245
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=54.54 E-value=28 Score=25.65 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=36.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-~G-~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~ 77 (188)
.||-.+....+..||++.+++ |+ +|..|..+.-..+ .-|||.+....+|.+..+.
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 344456778899999988886 56 5777776654443 2799999876554444333
No 246
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=54.15 E-value=16 Score=29.00 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=24.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEE
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 50 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~ 50 (188)
..-+.|+|||++++..-|..++.. ..+..+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 356889999999999999999987 555443
No 247
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=53.75 E-value=31 Score=20.12 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC---CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT---SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~---~~eda~~Ai~~l 78 (188)
..+.|.|+.-..-...|+..+.+...|..+.+..... -+.|+|. +.+++.++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~~~ 62 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE--QAVVSYHGETTPQILTDAVERA 62 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTCCHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCHHHHHHHHHHc
Confidence 4677888888777888999999988888887766544 6778874 456677777653
No 248
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=51.76 E-value=32 Score=19.81 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+...-.|..+.+..... .+.|.|. +.+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANS--NGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCC--EEEEEECCCcCCHHHHHHHHHHC
Confidence 3567777766555677888888877777777665543 6888886 346667777654
No 249
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=51.47 E-value=52 Score=22.10 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHh----------hcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceeccccceeEEEEee
Q 029768 27 GLPSSASWQDLKDHM----------RRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 96 (188)
Q Consensus 27 nLp~~~t~~dL~~~F----------~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g~~~~r~I~V~~ 96 (188)
+||.+++.+++.++- .+-|.+..+.-+...-.+++.+.-++.+++...|. +.-|... ..|.|..
T Consensus 10 ~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv~G~y~nisIfdv~s~~eLh~iL~---~LPLfpy---m~i~Vtp 83 (96)
T 1mli_A 10 KLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLM---QLPLFPY---MDIEVDG 83 (96)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEecCCccEEEEEEcCCHHHHHHHHH---hCCCCce---EEEEEEE
Confidence 799999988877653 34588888776655433477888888888886665 4444443 4666664
No 250
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=51.47 E-value=31 Score=19.52 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=40.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.|+.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 61 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKE--KAVVKFDEANVQATEICQAINEL 61 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTTCCHHHHHHHHHTT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 3577888887777788999999887788777765543 6888886 346667777654
No 251
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=50.89 E-value=22 Score=29.78 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=39.1
Q ss_pred EEEeCCCCCC----CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 23 VLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 23 v~V~nLp~~~----t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
-+||||..-. .+..+.++..+||+|..+.+.. .-+|...+++.|+.++.+ ++..+.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~-----~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT-----KTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT-----EEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC-----CCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 3589986532 2466778888999998776532 466778899999988853 3444443
No 252
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=50.67 E-value=6 Score=31.70 Aligned_cols=33 Identities=21% Similarity=0.028 Sum_probs=24.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEE
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF 53 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~ 53 (188)
.-+.|+|||++++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 357899999999999999999765455544433
No 253
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=50.43 E-value=35 Score=21.51 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=41.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..|.|.++.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++..||+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~--~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENR--SAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTT--EEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCC--EEEEEECCCCCCHHHHHHHHHhc
Confidence 4577788776666677889998887888887765544 7888886 356677778765
No 254
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=49.41 E-value=35 Score=19.52 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC---HHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS---YDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~---~eda~~Ai~~l 78 (188)
.+.|.|+.-..-...|+..+.+.-.|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~~~ 60 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKG--TAQLAIVPGTSPDALTAAVAGL 60 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTT--EEEEEECTTSCHHHHHHHHHTT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCC--EEEEEECCCCCHHHHHHHHHHC
Confidence 467888877766788899998887888877765544 67888863 46666777653
No 255
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=49.19 E-value=37 Score=22.99 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCCeeEEEEEeCCCCc--EEEEEeCC
Q 029768 34 WQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTS 67 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i~~~~~~~--~afV~F~~ 67 (188)
|-||.+.+..+| |....|..+.+++ |++++.++
T Consensus 26 WPEv~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 26 WPELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp CHHHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred CHHHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 456777788876 4455666665543 99999998
No 256
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=48.12 E-value=40 Score=19.72 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=39.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
.+.|.++.-..-...|+..+...-.|..+.+..... .+.|.|.. .+++..+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK--NATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 567777766656677888888887888777765543 68888863 56677777664
No 257
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=47.65 E-value=59 Score=22.12 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=37.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALE--TVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 3566777776666677777777766666665554433 6778876 456777777664
No 258
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=46.91 E-value=39 Score=19.37 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=40.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+...-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETR--QAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHhc
Confidence 3577788877777788999999888888777765543 6788886 356677777654
No 259
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=46.20 E-value=71 Score=22.13 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 27 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
.++... .+++.+.+.++-+|..|..+.....-++.|.+.+.++++..+.++.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 344433 67888888899999999877653322788889999999999987765
No 260
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=45.70 E-value=51 Score=22.32 Aligned_cols=56 Identities=13% Similarity=0.357 Sum_probs=38.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.|+.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++.++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALATS--KALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTT--EEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCC--EEEEEECCCCCCHHHHHHHHHhC
Confidence 4577777776666677888888777777776655433 6778876 456677777654
No 261
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=44.64 E-value=18 Score=28.30 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=21.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCe
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDV 47 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i 47 (188)
.-+.|+|||+.++...|..++...-.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~ 117 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAI 117 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCc
Confidence 357899999999999988888753333
No 262
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=44.47 E-value=48 Score=19.62 Aligned_cols=57 Identities=12% Similarity=0.231 Sum_probs=42.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
...+.|.++.-..-...|+..+.....|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK--NATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCC--EEEEEECCCCCCHHHHHHHHHHC
Confidence 35678889988888888999999887777777665543 68888863 46677777654
No 263
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=44.17 E-value=59 Score=24.33 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=33.5
Q ss_pred cEEEEeCCCCCCCHHHH--------HHHhhcCCCeeEEEEEeCCCCc-EEEEEeCCH
Q 029768 21 YRVLVTGLPSSASWQDL--------KDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSY 68 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL--------~~~F~~~G~i~~~~i~~~~~~~-~afV~F~~~ 68 (188)
++=||-.||.+++.++- +++|..+|-|..+-|+.+...+ -|.|-|.+.
T Consensus 71 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 71 FKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 45566789999988773 3456667888888888754443 777777654
No 264
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=43.76 E-value=17 Score=28.37 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=22.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeE
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCF 49 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~ 49 (188)
-+.|+|||+.++..-|..++.....+..
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCce
Confidence 3789999999999999999876544433
No 265
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=43.64 E-value=39 Score=20.01 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+.....|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAG--KAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTT--BEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 3577888877777788999998887777666544433 6788885 346667777654
No 266
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=43.34 E-value=47 Score=19.20 Aligned_cols=57 Identities=12% Similarity=0.281 Sum_probs=41.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 20 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
...+.|.++.-..-...|+..+.+.-.|..+.+..... .+.|.|.. .+++..+|+.+
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATN--KAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTT--EEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 45788999988877888999999887888877765543 68888864 34556666543
No 267
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=43.30 E-value=46 Score=19.06 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=37.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC---CHHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT---SYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~---~~eda~~Ai~~l 78 (188)
.+.|.|+.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTN--ECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTT--EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCHHHHHHHHHHC
Confidence 566777766656677888888877777666544333 6788886 346666777654
No 268
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=42.95 E-value=29 Score=20.05 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=35.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.+.|.|+.-..-...|+..+.+. .|..+.+..... .+.|+|...+++..+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~--~~~v~~~~~~~i~~~i~~~ 57 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEK--KVVVETENLDSVLKKLEEI 57 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTT--EEEEECSCHHHHHHHHHTT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCC--EEEEEECCHHHHHHHHHHc
Confidence 45566665555556788888877 777777665443 6888887655556666543
No 269
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=42.89 E-value=19 Score=29.87 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR 43 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~ 43 (188)
-++|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 3789999999999988888874
No 270
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=42.73 E-value=70 Score=21.02 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHccccee
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKLDRSEF 83 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~lng~~l 83 (188)
..+.|.++.-..-...|+..+...-.|..+.+..... .+.|+|.. .+++..+|+.+ |..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~--~~~V~~~~~~~~~~~i~~~i~~~-Gy~~ 73 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATG--RLTVTYDPKQVSEITIQERIAAL-GYTL 73 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTT--EEEEEECTTTCSHHHHHHHHHTT-TCCE
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCC--EEEEEECCCCCCHHHHHHHHHHc-CCee
Confidence 4678888888878888999999887788887765544 78888873 46677777654 5443
No 271
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=41.71 E-value=8.9 Score=30.21 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=23.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCeeEEEE
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAGDVCFSQV 52 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i 52 (188)
..|+|||+.++...|..++.....+..+.+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 379999999999999999987655544433
No 272
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=41.25 E-value=52 Score=19.13 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=41.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC--HHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS--YDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~--~eda~~Ai~~l 78 (188)
..+.|.|+.-..-...|+..+.+.-.|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~--~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATE--KLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTT--EEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCC--EEEEEECCCCHHHHHHHHHHc
Confidence 3577889887777788999999887788877765543 68888875 45566666654
No 273
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=38.82 E-value=52 Score=21.07 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=33.6
Q ss_pred eCCCCCCCHHHHHHHhh-cCC--------CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 26 TGLPSSASWQDLKDHMR-RAG--------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 26 ~nLp~~~t~~dL~~~F~-~~G--------~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
--+|.+++.++|.+-.. +++ ....+... |..| -||++.+.+|.+-|++.+
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk-DEdG--D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ-DEDG--DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE-ETTT--EEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE-cCCC--CEEEEcCHHHHHHHHHHH
Confidence 34788888888775443 344 22233333 3343 899999999999999865
No 274
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=37.09 E-value=35 Score=21.46 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC-CHHHHHHHHHHc
Q 029768 19 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT-SYDDMKYAIRKL 78 (188)
Q Consensus 19 ~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~-~~eda~~Ai~~l 78 (188)
....+.|.++.-..-...|+..+.+.-.|..+.+..... .+.|++. +.+++..+|+.+
T Consensus 22 ~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~--~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASR--TVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTT--EEEEESCCCHHHHHHHHHHT
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCC--EEEEEecCCHHHHHHHHHHc
Confidence 335677777766656677888888877777777665543 6777764 456677777654
No 275
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=36.82 E-value=97 Score=20.97 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=33.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-------CCCeeEEEEEeCCCC---c--EE-EEEeCCHHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRDRGG---M--TG-IVDYTSYDDMKYAI 75 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~-------~G~i~~~~i~~~~~~---~--~a-fV~F~~~eda~~Ai 75 (188)
|.+-.|...+++++++++... .-.|..+.+-.+-.. + ++ +++|++.++.+.-+
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHHh
Confidence 444578889998887766543 234666666555322 2 55 56799888876543
No 276
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=36.54 E-value=28 Score=28.72 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEeCCCCC---CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 23 VLVTGLPSS---ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 23 v~V~nLp~~---~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
-+||||..- -....+.++..+||+|..+.+. ..-+|...+++.++.++.+
T Consensus 19 PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g-----~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 19 PIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG-----SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHHT
T ss_pred ccccChhhhccccHhHHHHHHHHHhCCEEEEEEC-----CccEEEECCHHHHHHHHhc
Confidence 347887542 2356688889999999776652 1567888999999999864
No 277
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.51 E-value=73 Score=20.53 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=37.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC-CHHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT-SYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~-~~eda~~Ai~~l 78 (188)
.|.|. +.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~--~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQ--MVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTT--EEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCC--EEEEEEeCCHHHHHHHHHHh
Confidence 45565 555445577888888887788887766544 6777775 567777787654
No 278
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=36.39 E-value=27 Score=31.37 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHhh----cCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcc
Q 029768 27 GLPSSASWQDLKDHMR----RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~----~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~ln 79 (188)
..+.+.+--||..+|- .+|-|+.+.|..-+... +++|.|.+.++|..|+..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 3455555557888884 36678888776543322 78899999999999887653
No 279
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.00 E-value=3.9 Score=29.84 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC
Q 029768 34 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT 66 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~ 66 (188)
++|+.++|...|.|+..+ ...+ ||||+.+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn---~~kG-fGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFN---VRMG-FGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEE---TTTT-EEEEEEE
T ss_pred CCcccccccceeEEEEEE---CCCC-eeEEeeC
Confidence 357778888888886432 2223 9999976
No 280
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=35.78 E-value=54 Score=26.63 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 18 RSDYRVLVTGLPSS----------ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 18 ~~~~~v~V~nLp~~----------~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
+.+..|+|+|..+. .+.+.|+++|.+.|-- |.+..|- +.+++..+|+++
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~--V~~~~dl----------t~~em~~~l~~f 118 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFT--IFPYGNV----------NQDQFFKLLTMV 118 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEE--EEEECSC----------CHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCE--EEEccCC----------CHHHHHHHHHHH
Confidence 56788999998766 4566788999998843 2333332 345666666554
No 281
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=35.25 E-value=19 Score=29.84 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=32.9
Q ss_pred EEeCCCC---CCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 24 LVTGLPS---SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 24 ~V~nLp~---~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
+||||.. .-....+.++..+||+|..+.+.. .-+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~-----~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW-----TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT-----EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC-----eeEEEECCHHHHHHHHH
Confidence 4788653 334556788889999998776531 34566678888887774
No 282
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.20 E-value=93 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=23.7
Q ss_pred eeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccc
Q 029768 47 VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 47 i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~ 81 (188)
|..+.+... -.+|-||+++..+++..+|+...|.
T Consensus 40 i~~v~vP~~-fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES-LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT-STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc-cCCEEEEEEecchhHHHHHHCCCCc
Confidence 554444322 2239999999999999999776554
No 283
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=35.17 E-value=59 Score=24.23 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=27.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.-++|++||..|=... +.+.+.+-.|.+.+.|.+.|++.
T Consensus 131 ~l~~i~~fF~~YK~le-------~gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE-------KGKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHHTTTTS-------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-------CCCcEEEccCcCHHHHHHHHHHH
Confidence 4577889999984432 11116778899999999988754
No 284
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=35.05 E-value=65 Score=18.45 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=40.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+...-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATE--TVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHC
Confidence 4678889887777788999998877787777655433 6788885 356666777654
No 285
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=34.88 E-value=71 Score=21.51 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHHHhh-cCC--------CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 27 GLPSSASWQDLKDHMR-RAG--------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~-~~G--------~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
-+|.+++.++|.+-.. +++ .+..+.. +|.+| -||.+.+.+|.+-|++.+.
T Consensus 28 ~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY-kDEdG--D~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 28 LVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY-QDEDG--DFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE-ECSSS--CEEEECSHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHcCCccccccceeEEEE-EcCCC--CEEEEcCHHHHHHHHHHHH
Confidence 3688999999875432 222 1223333 34443 7999999999999998763
No 286
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=33.89 E-value=63 Score=24.12 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCCC------------CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 18 RSDYRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 18 ~~~~~v~V~nLp~~------------~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
+.+..|+|.|..+. ...+.|+++|...|--+ .+..+. +.+++..+|+++
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V--~~~~dl----------t~~em~~~l~~~ 103 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEV--KCFNDL----------KAEELLLKIHEV 103 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEE--EEEESC----------CHHHHHHHHHHH
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE--EEEeCC----------CHHHHHHHHHHH
Confidence 55678999887765 35677999999988532 233332 345566666554
No 287
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.87 E-value=1.3e+02 Score=21.68 Aligned_cols=56 Identities=2% Similarity=0.100 Sum_probs=40.2
Q ss_pred EEE-eCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 23 VLV-TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 23 v~V-~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.|| -.++. ...+++.+.+.++-+|..|..+.....-++.|.+.+.++++..++.+.
T Consensus 89 a~v~v~~~~-~~~~~v~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~l~~l~ 145 (171)
T 2e1c_A 89 AFILVKVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIG 145 (171)
T ss_dssp EEEEEEECT-TCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEEECc-chHHHHHHHHhcCcCeEEEEEeeCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 444 24553 356788889999999999987654322278889999999988876553
No 288
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=33.41 E-value=68 Score=19.79 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=43.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCC-cEEEEEeCCHHHHHHHHHHcccceec
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFR 84 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~-~~afV~F~~~eda~~Ai~~lng~~l~ 84 (188)
....+.|-||-+....+.+.|.+-+...|--..+ .....- .+-+--|.+.++|+.++.+|...-++
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 3456888899888877777777777665632222 222111 12233589999999999988765553
No 289
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=33.18 E-value=59 Score=25.84 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=22.9
Q ss_pred CCCCcEEEEeCCCCC------------CCHHHHHHHhhcCCC
Q 029768 17 RRSDYRVLVTGLPSS------------ASWQDLKDHMRRAGD 46 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~------------~t~~dL~~~F~~~G~ 46 (188)
.+.+..|+|+|..+. .+.+.|+++|...|-
T Consensus 19 ~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF 60 (278)
T 3od5_A 19 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF 60 (278)
T ss_dssp SBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTC
T ss_pred CCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 356788999997665 356778899999885
No 290
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=33.14 E-value=1.2e+02 Score=21.01 Aligned_cols=53 Identities=2% Similarity=0.072 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 27 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
.++ ....+++.+.+.++-+|..|..+.....-++.|.+.+.++++..++.+..
T Consensus 74 ~~~-~~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVK-AGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EEC-TTCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEC-cccHHHHHHHHhcCCCeeEeeEecCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 455 34568888999999999999886543222778899999999988865543
No 291
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=39.01 E-value=9.2 Score=26.23 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=37.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCC-CCc--EEE--EEeCCHHHHHHHHHHcccc
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGM--TGI--VDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~-~~~--~af--V~F~~~eda~~Ai~~lng~ 81 (188)
.....|+|=|..+ ..+++|..|..+.+ +..+.+.... ++. |.. =.|.+.++|..|++.|-..
T Consensus 21 ~p~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 21 APSSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 3445666665544 44667777777765 3334444322 222 222 2589999999999887543
No 292
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.58 E-value=44 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCe
Q 029768 17 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 47 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i 47 (188)
...++.|+|.++. ..+.++|+++...+|..
T Consensus 22 ~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 22 ILQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp TSTTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred cCCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 3678899999987 56788999999999864
No 293
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=31.77 E-value=68 Score=17.69 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=37.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
.+.|.++.-..-...|+..+...-.|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAG--KVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 567777766655667888888877787777654433 67888863 45666777654
No 294
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=31.60 E-value=52 Score=25.26 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 30 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 30 ~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
..+|+++|+++|.+.-.--. ....-.+..|.|.+.+.|+.+++.|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~f~----~~~~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDKYV----KPARVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGGSE----ECCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHhcc----ccceEEEEEEEeCCHHHHHHHHHHHH
Confidence 36899999999986321100 00000167888999999999998887
No 295
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=31.48 E-value=93 Score=21.17 Aligned_cols=47 Identities=9% Similarity=0.035 Sum_probs=34.7
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHH-HHcc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI-RKLD 79 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai-~~ln 79 (188)
..+++.+.+.++.+|..|..+.....-++.|.+.+.++++..+ +.+.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 4567778888899999887654322227788999999999888 5554
No 296
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=31.15 E-value=60 Score=27.53 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 029768 34 WQDLKDHM 41 (188)
Q Consensus 34 ~~dL~~~F 41 (188)
.++.+..+
T Consensus 154 ~e~A~~Ai 161 (437)
T 3pgw_S 154 ERDMHSAY 161 (437)
T ss_pred HHHHHHHH
Confidence 33433333
No 297
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=30.87 E-value=90 Score=21.93 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=33.8
Q ss_pred CcEEEEeCCCCCCCHHHHH---HHhhcCCCeeEEEEEeCCCCcEEEEEeC--CHHHHHHHHHHcc
Q 029768 20 DYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRGGMTGIVDYT--SYDDMKYAIRKLD 79 (188)
Q Consensus 20 ~~~v~V~nLp~~~t~~dL~---~~F~~~G~i~~~~i~~~~~~~~afV~F~--~~eda~~Ai~~ln 79 (188)
...|.|.++|..+..+--+ .+-.+|. |.-...+.....+.-.|.|+ +.|..++|++.|-
T Consensus 42 ~l~i~itgvpeqvrkelakeaerl~~efn-i~v~y~imgsgsgvm~i~f~gddlea~ekalkemi 105 (170)
T 4hhu_A 42 RLVIVITGVPEQVRKELAKEAERLKAEFN-INVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMI 105 (170)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHHT-CEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHhcc-eEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHH
Confidence 3467788999887644322 2223343 33223333433336666675 7888999987653
No 298
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.74 E-value=15 Score=23.05 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=12.3
Q ss_pred CCeeEEEEEeCCCCcEEEEEeCCH
Q 029768 45 GDVCFSQVFRDRGGMTGIVDYTSY 68 (188)
Q Consensus 45 G~i~~~~i~~~~~~~~afV~F~~~ 68 (188)
|+|..|+.. ...|||.|++.
T Consensus 28 GtV~kV~~~----~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSA----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETT----TTEEEEEETTT
T ss_pred eEEEEEecC----CcEEEEEEccC
Confidence 566554321 22899999874
No 299
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=30.67 E-value=32 Score=23.37 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHhhc-CCCeeEEEEE-eCCCCcEEEEEeCCHHHHHHHHH
Q 029768 28 LPSSASWQDLKDHMRR-AGDVCFSQVF-RDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~~-~G~i~~~~i~-~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
-+.+++|+||+.++.. || +..+.|. .|.++ =-|...+..+.+.||+
T Consensus 32 ~~~~~tweel~~mvk~~f~-L~~~~IkY~DEen--D~V~i~Sq~E~eEAlk 79 (101)
T 1wj6_A 32 DPENTTWADIEAMVKVSFD-LNTIQIKYLDEEN--EEVSINSQGEYEEALK 79 (101)
T ss_dssp CTTTSCHHHHHHHHHHHHC-CSSBCCEEECTTS--CEECCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-CCceEEEEecCCC--CEEEEecHHHHHHHHH
Confidence 4558999999999874 54 1111121 23332 2356677888888886
No 300
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.66 E-value=46 Score=21.34 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=27.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
+.+++.+++..+|-..-++...... ..++....+.+++..|++.+
T Consensus 33 ~~~~~~~~~~~~~~P~vvKp~~~~~-~~gv~~v~~~~el~~~~~~~ 77 (108)
T 2cqy_A 33 DAEEAVRIAREIGYPVMIKASAGGG-GKGMRIAWDDEETRDGFRLS 77 (108)
T ss_dssp SHHHHHHHHHHHCSSEEEEETTSCC-TTTCEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCC-CccEEEeCCHHHHHHHHHHH
Confidence 6778888877776433233222222 24445568999999998765
No 301
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=30.31 E-value=91 Score=21.72 Aligned_cols=32 Identities=6% Similarity=-0.134 Sum_probs=16.0
Q ss_pred CCCeeEEEEEeCCCCcEEEEE-eCCHHHHHHHH
Q 029768 44 AGDVCFSQVFRDRGGMTGIVD-YTSYDDMKYAI 75 (188)
Q Consensus 44 ~G~i~~~~i~~~~~~~~afV~-F~~~eda~~Ai 75 (188)
+=.|+.|+|..|-..-..||. |-+.++.+.++
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~ 75 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHME 75 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHH
Confidence 346777777766441134444 33444433333
No 302
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=30.14 E-value=79 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=27.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
.-++|++||..|=... +...+.+-.|.+.+.|.+.|+..+
T Consensus 127 ~l~~i~~fF~~YK~le-------~gK~v~~~gw~~~~~A~~~I~~~~ 166 (173)
T 1qez_A 127 TKNKIVHFFEHYKELE-------PGKYVKISGWGSATEAKNRIQLAI 166 (173)
T ss_dssp HHHHHHHHHHHTTTTS-------TTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-------CCCceEEccccCHHHHHHHHHHHH
Confidence 3467889999984432 111167778999999998887643
No 303
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=29.98 E-value=1.6e+02 Score=21.32 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..|.|.++.-..-...|+..+.+.-.|..+.+..... .+.|+|. +.+++..+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEG--TATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 5688888887777788999999988888887766544 7888886 456777777764
No 304
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=29.86 E-value=88 Score=24.65 Aligned_cols=30 Identities=3% Similarity=0.048 Sum_probs=22.8
Q ss_pred CCCCcEEEEeCCCCC------------CCHHHHHHHhhcCCC
Q 029768 17 RRSDYRVLVTGLPSS------------ASWQDLKDHMRRAGD 46 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~------------~t~~dL~~~F~~~G~ 46 (188)
.+.+..|+|+|..+. .+.+.|+++|...|-
T Consensus 19 ~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF 60 (277)
T 1nw9_B 19 EPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHF 60 (277)
T ss_dssp SSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTE
T ss_pred CcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCC
Confidence 456788999998764 256678899999884
No 305
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=29.68 E-value=92 Score=20.49 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHhhc-CCCeeEEEEE-eCCCCcEEEEEeCCHHHHHHHHH
Q 029768 28 LPSSASWQDLKDHMRR-AGDVCFSQVF-RDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~~-~G~i~~~~i~-~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
-+..++|++|+.++.. || +..+.|. .|.++ =-|...+..+.+.|++
T Consensus 24 ~~~~~tweel~~mvk~~f~-L~~~~ikY~DEen--D~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 24 DPENTTWADIEAMVKVSFD-LNTIQIKYLDEEN--EEVSINSQGEYEEALK 71 (87)
T ss_dssp CGGGCCHHHHHHHHHHHHT-CSSEEEEEECTTS--CEEEECSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcC-CCceEEEEEcCCC--CEEEEecHHHHHHHHH
Confidence 3458999999999874 54 2222332 23333 2356667888888886
No 306
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=29.51 E-value=38 Score=22.35 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcC
Q 029768 15 VSRRSDYRVLVTGLPSSASWQDLKDHMRRA 44 (188)
Q Consensus 15 ~~~~~~~~v~V~nLp~~~t~~dL~~~F~~~ 44 (188)
-.-.....|.|.+.+..++.++.++|+.+|
T Consensus 14 s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 14 TTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp --CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 356777899999999999999999988876
No 307
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=29.41 E-value=80 Score=21.25 Aligned_cols=32 Identities=6% Similarity=-0.084 Sum_probs=25.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCe
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 47 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i 47 (188)
.-..++++||.+.-+......|+.++-.||..
T Consensus 6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 34678999999887666777889999888864
No 308
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=29.32 E-value=11 Score=26.28 Aligned_cols=26 Identities=0% Similarity=-0.158 Sum_probs=0.0
Q ss_pred EEEEEeCCHHHHHHHHHHcccceecc
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
++|++|+++..+..|++.|+|....|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp --------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCC
Confidence 67888888888999999888877665
No 309
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=29.05 E-value=39 Score=18.47 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHhhcCC
Q 029768 29 PSSASWQDLKDHMRRAG 45 (188)
Q Consensus 29 p~~~t~~dL~~~F~~~G 45 (188)
-..|+.++|+.+|.+..
T Consensus 19 ~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp SSCCCHHHHHHHHHTCC
T ss_pred cCcCCHHHHHHHHHHcc
Confidence 34689999999998763
No 310
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=28.85 E-value=90 Score=18.15 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC-CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT-SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~-~~eda~~Ai~~l 78 (188)
..+.| ++.-.--...|+..+.+...| .+.+-.... -+.|++. +.+++..||+.+
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~--~~~v~~~~~~~~i~~~i~~~ 58 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNK--KVCIESEHSMDTLLATLKKT 58 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTT--EEEEEESSCHHHHHHHHHTT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCC--EEEEEecCCHHHHHHHHHHc
Confidence 35667 777666677888888887777 777766544 5667664 577778888653
No 311
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=28.76 E-value=81 Score=17.59 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+...-.|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 64 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVATG--RLTVTYDPKQVSEITIQERIAAL 64 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTT--EEEEEECTTTCCTHHHHHHHHTT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 3577888877766777888888877787777655443 67888863 35566667643
No 312
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=34.85 E-value=12 Score=25.48 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCeeEEE-------------EEeCCC--------CcEEEEEeCCHHHHHHHHH
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-------------VFRDRG--------GMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~-------------i~~~~~--------~~~afV~F~~~eda~~Ai~ 76 (188)
...|-|-|-|+|..|-..++.-.....|---+|+ |..+.. .+-|.|.|.+.++-.-||+
T Consensus 16 kqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiq 95 (137)
T 2lsl_A 16 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQ 95 (137)
Confidence 3557778889999887777654333322211221 111110 0178999999988888887
Q ss_pred Hccc
Q 029768 77 KLDR 80 (188)
Q Consensus 77 ~lng 80 (188)
+|-+
T Consensus 96 klln 99 (137)
T 2lsl_A 96 KLLN 99 (137)
Confidence 6533
No 313
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=27.72 E-value=23 Score=22.58 Aligned_cols=17 Identities=12% Similarity=0.561 Sum_probs=14.5
Q ss_pred CHHHHHHHhhcCCCeeE
Q 029768 33 SWQDLKDHMRRAGDVCF 49 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~ 49 (188)
|--|+++++.+||.|++
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 56799999999998865
No 314
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=27.61 E-value=1.2e+02 Score=23.92 Aligned_cols=64 Identities=3% Similarity=-0.030 Sum_probs=40.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC--eeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 18 RSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 18 ~~~~~v~V~nLp~~~t~~dL~~~F~~~G~--i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
..=++|-|-+ ....++++|.+++..... +.-+.+..++. -|.-..++...|. |+..++|....+
T Consensus 22 ~~w~kv~I~~-g~ky~k~~ll~~i~~~~~~~f~p~~~~~~~~--~~~ffV~~~~~A~-~l~~~~g~i~~~ 87 (267)
T 3rw6_A 22 KNWFKITIPY-GRKYDKAWLLSMIQSKCSVPFTPIEFHYENT--RAQFFVEDASTAS-ALKAVNYKILDR 87 (267)
T ss_dssp -CCEEEEETT-GGGSCHHHHHHHHHHTCSSCCCCEEEEEETT--EEEEEESCHHHHH-HHHHTTSSCBCT
T ss_pred CCeEEEEecC-ccccCHHHHHHHHHHhCCCCcEeEEEEEeCC--EEEEEeCChHHHH-HHHhcCcEEECC
Confidence 4457787866 667899999999987553 34445554444 2332235666565 577889887754
No 315
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=27.50 E-value=1.5e+02 Score=20.19 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=34.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-------CCCeeEEEEEeCCC-----Cc--EE-EEEeCCHHHHHHHH
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRDRG-----GM--TG-IVDYTSYDDMKYAI 75 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~-------~G~i~~~~i~~~~~-----~~--~a-fV~F~~~eda~~Ai 75 (188)
-|.+-.|...+++++++++... .-.|..+.+-.+-. .+ ++ +++|++.++.+..+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3444588999988876665533 44577776655433 12 44 56899999877654
No 316
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=26.99 E-value=98 Score=17.98 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=36.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----CHHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----~~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|. +.+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL--ETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSS--SEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHc
Confidence 356777877665567788888887667665544332 26778886 345666777653
No 317
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.90 E-value=29 Score=22.92 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.2
Q ss_pred EeCCCCCCCHHHHHHHhhcC
Q 029768 25 VTGLPSSASWQDLKDHMRRA 44 (188)
Q Consensus 25 V~nLp~~~t~~dL~~~F~~~ 44 (188)
|-+|+.+++.++|+..|.+.
T Consensus 22 vLgv~~~as~~eIk~ayr~l 41 (99)
T 2yua_A 22 LLGVPSTATQAQIKAAYYRQ 41 (99)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 56899999999999988763
No 318
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=26.74 E-value=87 Score=19.58 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCee
Q 029768 16 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 48 (188)
Q Consensus 16 ~~~~~~~v~V~nLp~~~t~~dL~~~F~~~G~i~ 48 (188)
....++.|+|.++.. ...++|+++...+|...
T Consensus 6 ~~f~g~~~~i~g~~~-~~~~~l~~~i~~~GG~~ 37 (92)
T 4id3_A 6 KIFKNCVIYINGYTK-PGRLQLHEMIVLHGGKF 37 (92)
T ss_dssp CTTTTCEEEECSCCS-SCHHHHHHHHHHTTCEE
T ss_pred cccCCEEEEEeCCCC-cCHHHHHHHHHHCCCEE
Confidence 456789999998643 36889999999998653
No 319
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=26.41 E-value=1.2e+02 Score=18.82 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCC----HHHHHHHHHHc
Q 029768 21 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS----YDDMKYAIRKL 78 (188)
Q Consensus 21 ~~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~----~eda~~Ai~~l 78 (188)
..+.|.++.-..-...|+..+...-.|..+.+..... .+.|+|.. .+++..+|+.+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSR--TVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTT--EEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCC--EEEEEECCCCCCHHHHHHHHHHc
Confidence 4678889988878888999999887788777655443 68888863 55666777654
No 320
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=26.31 E-value=1.4e+02 Score=21.71 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCCCCCC------------CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 17 RRSDYRVLVTGLPSSA------------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~~------------t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
.+.+..|+|.|..+.. ..+.|+++|...|--+ .+..+. +.+++..+|+++-.
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V--~~~~dl----------t~~em~~~l~~~~~ 94 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV--HVLCDQ----------TAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE--EEEESC----------CHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE--EEeeCC----------CHHHHHHHHHHhhh
Confidence 3467889998876641 5666888999888432 333332 35667777766543
No 321
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=26.24 E-value=1.2e+02 Score=19.87 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=34.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCC---eeEEEEEeCCCCcEE--EEEeC--CHHHHHHHHHHcccc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGGMTG--IVDYT--SYDDMKYAIRKLDRS 81 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~---i~~~~i~~~~~~~~a--fV~F~--~~eda~~Ai~~lng~ 81 (188)
.|-|.-....+.+-.|-++..+||- |....|-.-....+| +|++. +.+++++|++.|...
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~ 88 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIER 88 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHC
Confidence 3444333344566667788777873 444444443332245 55566 467788888877544
No 322
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=25.88 E-value=95 Score=23.05 Aligned_cols=41 Identities=7% Similarity=0.123 Sum_probs=27.2
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
.-++|++||..|=... ..+...+.+-.|.+.+.|.+.|+..
T Consensus 128 ~l~~i~~fF~~YK~le-----~k~gK~v~~~gw~~~~~A~~~I~~~ 168 (174)
T 2prd_A 128 VKQEIQHFFETYKALE-----AKKGKWVKVTGWRDRKAALEEVRAC 168 (174)
T ss_dssp HHHHHHHHHHHTTGGG-----GGGTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-----ccCCCceEECcccCHHHHHHHHHHH
Confidence 3567888999984331 0011116777899999999888754
No 323
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=25.69 E-value=65 Score=24.54 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=25.7
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEE-EeCCHHHHHHHHHHc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIV-DYTSYDDMKYAIRKL 78 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV-~F~~~eda~~Ai~~l 78 (188)
.-++|++||..|=.+. . +++++| .|.+.+.|.+.|++.
T Consensus 152 ~l~~I~~fF~~YK~le-------~-~K~v~v~~~~~~~~A~~~I~~~ 190 (197)
T 3fq3_A 152 TLKQIAHFFEHYKDLE-------P-GKWVKIGDWGDEDYARKFIVEA 190 (197)
T ss_dssp HHHHHHHHHHHTTTTS-------T-TCCEEECCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcC-------C-CCeEEeCCCCCHHHHHHHHHHH
Confidence 3577899999985542 1 123433 588999988888654
No 324
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=25.55 E-value=1.4e+02 Score=19.35 Aligned_cols=51 Identities=0% Similarity=-0.093 Sum_probs=32.8
Q ss_pred EEeCCCCCCCHHHHHHHhh-------cCCCeeEEEEEeCCCC---c--EE-EEEeCCHHHHHHH
Q 029768 24 LVTGLPSSASWQDLKDHMR-------RAGDVCFSQVFRDRGG---M--TG-IVDYTSYDDMKYA 74 (188)
Q Consensus 24 ~V~nLp~~~t~~dL~~~F~-------~~G~i~~~~i~~~~~~---~--~a-fV~F~~~eda~~A 74 (188)
.+-.|...+++++++++.. +.-.|..+.+-.+..+ + ++ +++|++.++.+.-
T Consensus 9 Vlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~Y 72 (103)
T 2qyc_A 9 VMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDAY 72 (103)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHHH
Confidence 3346888888877665543 2456777777665332 2 44 5679999887654
No 325
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=25.52 E-value=78 Score=26.22 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=29.5
Q ss_pred EEEeCCCCC--CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 23 VLVTGLPSS--ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 23 v~V~nLp~~--~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
-+||||..- -....+.++..+||+|..+.+. ..-+|...+++.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g-----~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG-----SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC-----CccEEEECCHHHHHHHHH
Confidence 457877542 2345677888899999876652 146788889999888874
No 326
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=25.45 E-value=37 Score=29.37 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=27.0
Q ss_pred HHHHHhh--cCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHH
Q 029768 36 DLKDHMR--RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAI 75 (188)
Q Consensus 36 dL~~~F~--~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai 75 (188)
+|..+|. .+|-|+.+.+...+... .+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 4566673 57889888876654332 5688899877766544
No 327
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=25.35 E-value=2.5e+02 Score=22.16 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 35 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 35 ~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
++|.+...++|-+- + ..-..|...|..|.+.+.|+++.+.|....+.+
T Consensus 238 ~~i~~~~~~~Ga~g-a--~mSGsGptvfal~~~~~~a~~~~~~l~~~g~~~ 285 (306)
T 3pyf_A 238 ARALRAGVEAGALA-G--IVSGSGPTCAFLCTSASSAIDVGAQLSGAGVCR 285 (306)
T ss_dssp HHHHHHHHHTTCSE-E--EECTTSSEEEEEESSHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhcCCCE-E--EEcCcchhheEEeCCHHHHHHHHHHHHhcCCcc
Confidence 34444555566432 1 222223378888999888888887776554444
No 328
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.27 E-value=22 Score=22.99 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=7.6
Q ss_pred EEEEEeCCH
Q 029768 60 TGIVDYTSY 68 (188)
Q Consensus 60 ~afV~F~~~ 68 (188)
.|+|.|++.
T Consensus 56 ~ClV~F~D~ 64 (79)
T 2m0o_A 56 VCLVQFEDD 64 (79)
T ss_dssp EEEEEETTS
T ss_pred EEEEEEcCC
Confidence 899999874
No 329
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=25.15 E-value=50 Score=21.69 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=32.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhc---CCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMRR---AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~---~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
||+--||.+++-++|++-... .+++.- .+..+.. -+- +..+-++++.||+.
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~~~~l-~~ykde~--~g~-~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTDNFKL-QTKLFDG--SGE-EIKTDSQVSNIIQA 76 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSSCEEE-EECCSSS--CCS-CCCSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEE-EEecCCC--CCC-cccCHHHHHHHHHh
Confidence 566679999999999976653 333221 1112221 122 88899999999975
No 330
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=25.02 E-value=65 Score=28.38 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=32.4
Q ss_pred eCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC----------CHHHHHHHHHH
Q 029768 26 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----------SYDDMKYAIRK 77 (188)
Q Consensus 26 ~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~----------~~eda~~Ai~~ 77 (188)
..||...+..++.+||..||+-....+..... +-+|..- +.++++++|..
T Consensus 289 ~~LP~~y~~~~y~~fi~~yGTHyi~s~~lGG~--~~~i~~l~~~~~~~sglt~~dvk~Cl~~ 348 (554)
T 3ojy_A 289 MELPDQYNYGMYAKFINDYGTHYITSGSMGGI--YEYILVIDKAKMESLGITSRDITTCFGG 348 (554)
T ss_dssp HTCCSSCCHHHHHHHHHHHCSEEEEEEEEEEE--EEEEEEEEHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCCccCCHHHHHHHHHhcCcEEEEeeeeCcE--EEEEEEEehhhhhhcCCCHHHHHHHHhh
Confidence 36888888999999999999844444443322 4444432 35667777654
No 331
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=24.89 E-value=1.7e+02 Score=19.94 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=32.9
Q ss_pred EEEeCCCCCCCHHHHHHHhh-------cCCCeeEEEEEeCCCC--c--EE-EEEeCCHHHHHHH
Q 029768 23 VLVTGLPSSASWQDLKDHMR-------RAGDVCFSQVFRDRGG--M--TG-IVDYTSYDDMKYA 74 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~-------~~G~i~~~~i~~~~~~--~--~a-fV~F~~~eda~~A 74 (188)
|..-.|...+++++++++.. +.-.|..+.+-.+-.. . +| +++|++.++.+.-
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~Y 87 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTRY 87 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHHH
Confidence 34446888888777666553 3456777777665432 1 55 4579998887643
No 332
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=24.85 E-value=1.7e+02 Score=20.05 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=36.2
Q ss_pred CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHH-HHcc
Q 029768 32 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI-RKLD 79 (188)
Q Consensus 32 ~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai-~~ln 79 (188)
...+++.+.+.++-+|..|..+.....-++.|...+.++++..+ +.+.
T Consensus 76 ~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~l~~~l~ 124 (150)
T 2pn6_A 76 NYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVM 124 (150)
T ss_dssp THHHHHHHHHHTSTTEEEEEECSSSCSEEEEEEESSHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCchhhhhhhhcCcCCEEEEEEECCHHHHHHHHHHHhc
Confidence 45577888888999999988765432227888899999999887 5554
No 333
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=24.63 E-value=78 Score=21.10 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhhcCCC---eeEEEEEeCCCCcEE--EEEeC-CHHHHHHHHHHccccee
Q 029768 31 SASWQDLKDHMRRAGD---VCFSQVFRDRGGMTG--IVDYT-SYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~---i~~~~i~~~~~~~~a--fV~F~-~~eda~~Ai~~lng~~l 83 (188)
.+.+-.|-++..+||- |....|-.-.+..|| +|++. +.+++++|++.|....+
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 4555677788888883 444444332332255 45555 46778888887765543
No 334
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=24.51 E-value=62 Score=26.91 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=33.2
Q ss_pred EeCCCCC---CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 25 VTGLPSS---ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 25 V~nLp~~---~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
||||..- -....+.++..+||+|..+.+. + ..+|...+++.++.++.
T Consensus 14 iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~-~~~v~v~~~~~~~~il~ 63 (470)
T 2ij2_A 14 LKNLPLLNTDKPVQALMKIADELGEIFKFEAP----G-RVTRYLSSQRLIKEACD 63 (470)
T ss_dssp GTTGGGGCSSCHHHHHHHHHHHHCSEEEEEET----T-EEEEEECCHHHHHHHTC
T ss_pred cccHHHHhcccchHHHHHHHHHhCCeEEEecC----C-ccEEEECCHHHHHHHHh
Confidence 7887432 2345677888899999876652 1 46778888888888763
No 335
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=24.44 E-value=33 Score=24.85 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=14.9
Q ss_pred EEEEEeCCHHHHHHHHHHcccce
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSE 82 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~ 82 (188)
.||-++.+.|+++.|+++..|+.
T Consensus 26 ~Gf~eL~T~e~Vd~a~~~~~GTt 48 (147)
T 3fhk_A 26 AGFEELTTAEEVENFMEKAEGTT 48 (147)
T ss_dssp TTCEECCSHHHHHHHHHHCCSEE
T ss_pred hCccccCCHHHHHHHHhcCCCcE
Confidence 46677777777777776544544
No 336
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.20 E-value=99 Score=21.79 Aligned_cols=31 Identities=6% Similarity=-0.076 Sum_probs=22.2
Q ss_pred EeCCCCCCCHHHHHHHhhc-CC--CeeEEEEEeC
Q 029768 25 VTGLPSSASWQDLKDHMRR-AG--DVCFSQVFRD 55 (188)
Q Consensus 25 V~nLp~~~t~~dL~~~F~~-~G--~i~~~~i~~~ 55 (188)
|-++...++++++++++.+ ++ +|..+.+-..
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~ 101 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLARE 101 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEE
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeE
Confidence 5667788999999999963 44 5666655443
No 337
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=24.18 E-value=1.3e+02 Score=18.36 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEE----EEeCCHHHHHHHHHHccc
Q 029768 29 PSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGI----VDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 29 p~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~af----V~F~~~eda~~Ai~~lng 80 (188)
...-.-.+|-.+|.+.| .|..+.+..... .+. |+..+.++++.++++|..
T Consensus 14 Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 14 DKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp CCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhc
Confidence 33344678889999877 677777655433 333 345577788888877743
No 338
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=23.91 E-value=99 Score=25.43 Aligned_cols=39 Identities=8% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHH
Q 029768 34 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 77 (188)
Q Consensus 34 ~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ 77 (188)
...|.++..+||+|..+.+.. .-+|.+.+++.++.++..
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g~-----~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLGN-----VESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEETT-----EEEEEECCHHHHHHHHHT
T ss_pred hHHHHHHHHHcCceeeccCCC-----CCEEEEcCHHHHHHHHHh
Confidence 356778889999998876521 457888999999988854
No 339
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=23.73 E-value=1.2e+02 Score=23.96 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=21.3
Q ss_pred CCCCcEEEEeCCCCC-------------------CCHHHHHHHhhcCCC
Q 029768 17 RRSDYRVLVTGLPSS-------------------ASWQDLKDHMRRAGD 46 (188)
Q Consensus 17 ~~~~~~v~V~nLp~~-------------------~t~~dL~~~F~~~G~ 46 (188)
.+.+..|+|+|..+. .+.+.|+++|...|-
T Consensus 15 ~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF 63 (271)
T 3h11_B 15 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHF 63 (271)
T ss_dssp SSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCC
Confidence 345788999994432 245668889999885
No 340
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.54 E-value=1.9e+02 Score=19.99 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHH-HHcc
Q 029768 27 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI-RKLD 79 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai-~~ln 79 (188)
.++.....+++.+.+.++-+|..|..+.....-+..|.+.+.++++..+ +.+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 4444445678889999999999998875533227788899999999887 3443
No 341
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=23.50 E-value=1.8e+02 Score=19.87 Aligned_cols=23 Identities=4% Similarity=0.225 Sum_probs=15.7
Q ss_pred EEEEEeCCHHHHHHHHHHccccee
Q 029768 60 TGIVDYTSYDDMKYAIRKLDRSEF 83 (188)
Q Consensus 60 ~afV~F~~~eda~~Ai~~lng~~l 83 (188)
.+.|.+++.+.|.++|.+ .|.++
T Consensus 113 ~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 113 NVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEESCHHHHHHHHHH-TTCEE
T ss_pred EEEEEeCCHHHHHHHHHH-cCCEE
Confidence 455678888888887765 45554
No 342
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=23.27 E-value=28 Score=17.65 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHhhcCCCee
Q 029768 27 GLPSSASWQDLKDHMRRAGDVC 48 (188)
Q Consensus 27 nLp~~~t~~dL~~~F~~~G~i~ 48 (188)
|.|+++...--.+-|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 5677766666667788998764
No 343
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=23.22 E-value=1e+02 Score=24.16 Aligned_cols=30 Identities=3% Similarity=0.019 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCCCC-----------CCHHHHHHHhhcCCCe
Q 029768 18 RSDYRVLVTGLPSS-----------ASWQDLKDHMRRAGDV 47 (188)
Q Consensus 18 ~~~~~v~V~nLp~~-----------~t~~dL~~~F~~~G~i 47 (188)
+.+..|+|+|..+. .+.+.|+++|...|--
T Consensus 19 ~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~ 59 (259)
T 3sir_A 19 NRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFE 59 (259)
T ss_dssp EEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCE
T ss_pred CccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCE
Confidence 34577899986543 5677899999998853
No 344
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=22.99 E-value=1.3e+02 Score=23.79 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCc----------EEEEEeCCHHHHHHHHHHcccc
Q 029768 28 LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----------TGIVDYTSYDDMKYAIRKLDRS 81 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~----------~afV~F~~~eda~~Ai~~lng~ 81 (188)
||..++++||+.+-.....=..+..+..+.+. +|+|--.-.++..++|+..=+.
T Consensus 75 vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgV 138 (248)
T 4a18_J 75 VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGV 138 (248)
T ss_dssp ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTC
T ss_pred eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCC
Confidence 68999999999885543322233444443321 8888777666666666543333
No 345
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.80 E-value=2e+02 Score=20.20 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=39.7
Q ss_pred EEEEe-CCCCCC--CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 22 RVLVT-GLPSSA--SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~-nLp~~~--t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
..||. .++... ..+++.+.+.++-+|..|..+...-.-+.+|.+.+.++++..+..+
T Consensus 64 ~a~v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 64 TVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp EEEEEEECCSCCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEEEEcCCChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECCHHHHHHHHHHH
Confidence 44553 555543 3567777888899999998865432227888899999998887643
No 346
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=22.68 E-value=1.7e+02 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=34.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-------CCCeeEEEEEeCCCC-----c--EE-EEEeCCHHHHHHHH
Q 029768 22 RVLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRDRGG-----M--TG-IVDYTSYDDMKYAI 75 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~-------~G~i~~~~i~~~~~~-----~--~a-fV~F~~~eda~~Ai 75 (188)
-|.+-.|...++.++++++... .-.|..+.+-.+-.. + ++ +++|++.++.+.-+
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 3444578899988887666543 345666666554331 2 44 56899999877654
No 347
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=22.60 E-value=60 Score=26.93 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.7
Q ss_pred EEeCCCCC---CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH
Q 029768 24 LVTGLPSS---ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 76 (188)
Q Consensus 24 ~V~nLp~~---~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~ 76 (188)
+||||..- -....+.++..+||+|..+.+. . ..+|.+.+++.++.++.
T Consensus 20 ~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g--~---~~~v~v~~~~~i~~il~ 70 (476)
T 1po5_A 20 VLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLG--S---RPVVVLCGTDAIREALV 70 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET--T---EEEEEECSHHHHHHHHT
T ss_pred ccccHHhccCCcHHHHHHHHHHHhCCEEEEEEC--C---ccEEEECCHHHHHHHHH
Confidence 47777532 2246677888899999876542 1 35688889999998873
No 348
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.56 E-value=50 Score=21.45 Aligned_cols=19 Identities=16% Similarity=0.637 Sum_probs=15.7
Q ss_pred EeCCCCC-CCHHHHHHHhhc
Q 029768 25 VTGLPSS-ASWQDLKDHMRR 43 (188)
Q Consensus 25 V~nLp~~-~t~~dL~~~F~~ 43 (188)
|=|||++ .||.+|-++|.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 3488888 689999999976
No 349
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.46 E-value=1e+02 Score=26.41 Aligned_cols=52 Identities=19% Similarity=0.076 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHhh----cCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcc
Q 029768 28 LPSSASWQDLKDHMR----RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~----~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~ln 79 (188)
+..+.+.-+|..+|- .+|-|+.+.+...+... .+++.|.+.++|.+|+..+.
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 334444446666654 24567777766544322 67889999999988887653
No 350
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=22.25 E-value=54 Score=29.00 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHhh----cCCCeeEEEEEeCCCCc---EEEEEeCCHHHHHHHHHHcc
Q 029768 28 LPSSASWQDLKDHMR----RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 28 Lp~~~t~~dL~~~F~----~~G~i~~~~i~~~~~~~---~afV~F~~~eda~~Ai~~ln 79 (188)
++.+.+.-||..+|- .+|-|+.+.+...+... .+++.|.+.++|.+|+..+-
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 343334445666554 34568877766544322 67889999999988887654
No 351
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=21.53 E-value=1.9e+02 Score=19.40 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCHHHHHHHhhc-C---CCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 32 ASWQDLKDHMRR-A---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 32 ~t~~dL~~~F~~-~---G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
++-++|.+.... | ......-.-.|..| =.|.|.+.+++..|+..++
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedG--DlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERG--DLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTC--CEEEECSHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCC--CEEEecCHHHHHHHHHhcC
Confidence 356777665554 3 22212222234443 4799999999999998765
No 352
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=21.51 E-value=1.7e+02 Score=18.93 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=30.9
Q ss_pred CCCHHHHHHHhhcCCCe-eEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcccceecc
Q 029768 31 SASWQDLKDHMRRAGDV-CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 85 (188)
Q Consensus 31 ~~t~~dL~~~F~~~G~i-~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng~~l~g 85 (188)
--|+++|+.++..|-+- ..+ -..|...+.+++++|.+..+..+|+-
T Consensus 32 vktedelkkyleefrkesqni---------kvlilvsndeeldkakelaqkmeidv 78 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNI---------KVLILVSNDEELDKAKELAQKMEIDV 78 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSE---------EEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred eccHHHHHHHHHHHHhhccCe---------EEEEEEcChHHHHHHHHHHHhhceee
Confidence 35889999888776431 111 24456678888888887766677765
No 353
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.49 E-value=1.5e+02 Score=18.01 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=36.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHH-Hcc
Q 029768 33 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR-KLD 79 (188)
Q Consensus 33 t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~-~ln 79 (188)
..+++.+.+.++-+|..|..+.+...-...|.+.+.++++..+. .+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNTIR 61 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGG
T ss_pred CHHHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHHHHhc
Confidence 35788888889999999988765433377888999999998875 443
No 354
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=21.49 E-value=1.1e+02 Score=16.64 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=34.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeC-CHHHHHHHHHHc
Q 029768 22 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT-SYDDMKYAIRKL 78 (188)
Q Consensus 22 ~v~V~nLp~~~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~-~~eda~~Ai~~l 78 (188)
.+.|.|+.-..-...|+..+.+...|..+.+..... .+.|++. +.+++..+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~i~~~i~~~ 59 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSK--KVTITSALGEEQLRTAIASA 59 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTC--EEEEECSSCHHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCC--EEEEEecCCHHHHHHHHHHc
Confidence 456666665555667888888766677766654433 5566543 456677777654
No 355
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=21.23 E-value=1.2e+02 Score=23.46 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCCCC------------CCHHHHHHHhhcCCCe
Q 029768 18 RSDYRVLVTGLPSS------------ASWQDLKDHMRRAGDV 47 (188)
Q Consensus 18 ~~~~~v~V~nLp~~------------~t~~dL~~~F~~~G~i 47 (188)
+.+..|.|+|..+. .+.+.|.++|.+.|--
T Consensus 15 ~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~ 56 (250)
T 2j32_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYE 56 (250)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCE
T ss_pred CccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCE
Confidence 45678899996553 1566788999998853
No 356
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=20.88 E-value=46 Score=26.31 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=34.9
Q ss_pred CCCcEEEEeCCCCC--CCHHHHHHHhhcCCCee----EEEEEeCCCCcEEEEEeC----CHHHHH-HHHH
Q 029768 18 RSDYRVLVTGLPSS--ASWQDLKDHMRRAGDVC----FSQVFRDRGGMTGIVDYT----SYDDMK-YAIR 76 (188)
Q Consensus 18 ~~~~~v~V~nLp~~--~t~~dL~~~F~~~G~i~----~~~i~~~~~~~~afV~F~----~~eda~-~Ai~ 76 (188)
+.+..|+|--|..+ =|..+|+.+|.++|--. .|..+.++ .|+|.|. +.+++. .||+
T Consensus 92 PgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~---kG~i~~~~~~~~ed~~le~ale 158 (249)
T 1lfp_A 92 PGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFER---KGYIEVPAKEVSEEELLEKAIE 158 (249)
T ss_dssp TTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEE---EEEEEEEGGGSCHHHHHHHHHH
T ss_pred CCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhhe---eeEEEEcCCCCCHHHHHHHHHh
Confidence 45688888888666 57889999999986421 11111221 5788887 455443 4543
No 357
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=20.87 E-value=1.2e+02 Score=24.48 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCCCC---------CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHc
Q 029768 18 RSDYRVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 78 (188)
Q Consensus 18 ~~~~~v~V~nLp~~---------~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~l 78 (188)
..+..|+|+|..+. .+.+.|+++|...|-- |.+..|- +.+++..+|+++
T Consensus 59 ~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~--V~~~~dl----------t~~em~~~l~~f 116 (302)
T 3e4c_A 59 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYS--VDVKKNL----------TASDMTTELEAF 116 (302)
T ss_dssp CCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCE--EEEEESC----------CHHHHHHHHHHH
T ss_pred CccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCE--EEEeeCC----------CHHHHHHHHHHH
Confidence 45678999998653 3566688899998853 2333332 356666676665
No 358
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=20.78 E-value=1.9e+02 Score=21.28 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCCcEEEEeCCCCC---------CCHHHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 18 RSDYRVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 18 ~~~~~v~V~nLp~~---------~t~~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
..+..|+|+|-.+. ...+.|+++|...|--+ .+..+ .+.+++..+|+++-
T Consensus 42 ~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V--~~~~d----------lt~~em~~~l~~f~ 100 (178)
T 2h54_A 42 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSV--DVKKN----------LTASDMTTELEAFA 100 (178)
T ss_dssp CCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEE--EEEES----------CCHHHHHHHHHHHH
T ss_pred cCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEE--EEecC----------CCHHHHHHHHHHHH
Confidence 45778999987542 34556888999887532 23333 24678888887763
No 359
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=20.77 E-value=2.1e+02 Score=19.62 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHcc
Q 029768 35 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 79 (188)
Q Consensus 35 ~dL~~~F~~~G~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~ln 79 (188)
+++.+.+.++-+|..|..+.....-++.|.+.+.++++..+.++.
T Consensus 82 ~~~~~~l~~~p~V~~~~~~~G~~d~~~~v~~~~~~~l~~~l~~l~ 126 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSVAGEASYVLLVRVASARALEDLLQRIR 126 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEeECCCCEEEEEEECCHHHHHHHHHHHh
Confidence 678888888989998887664332277788999999988887653
No 360
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.42 E-value=1.6e+02 Score=21.72 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=31.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCC-CeeEEEEEeCCCCcEEEEEeCCHHHHHHHHHHccc
Q 029768 23 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 80 (188)
Q Consensus 23 v~V~nLp~~~t~~dL~~~F~~~G-~i~~~~i~~~~~~~~afV~F~~~eda~~Ai~~lng 80 (188)
|+|.........+.|+.+.. .| +|+.+....+....+++|.+.+.+.+..|++.|-.
T Consensus 63 ii~~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 120 (276)
T 3ksm_A 63 LILAPNSAEDLTPSVAQYRA-RNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLA 120 (276)
T ss_dssp EEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHH-CCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHH
Confidence 44444444455555655443 34 44333211111111588999999888888876643
Done!