BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029770
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV
QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNS
WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGI
RGRIADFM

High Scoring Gene Products

Symbol, full name Information P value
AT1G06510 protein from Arabidopsis thaliana 1.8e-32

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029770
        (188 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009135 - symbol:AT1G06510 "AT1G06510" species...   355  1.8e-32   1


>TAIR|locus:2009135 [details] [associations]
            symbol:AT1G06510 "AT1G06510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:BT002812 EMBL:BT004362
            IPI:IPI00547078 RefSeq:NP_172138.2 UniGene:At.42337 IntAct:Q84K72
            PaxDb:Q84K72 PRIDE:Q84K72 EnsemblPlants:AT1G06510.1 GeneID:837162
            KEGG:ath:AT1G06510 TAIR:At1g06510 eggNOG:NOG252487
            HOGENOM:HOG000147068 InParanoid:Q84K72 OMA:IICKEAN PhylomeDB:Q84K72
            ProtClustDB:CLSN2690739 ArrayExpress:Q84K72 Genevestigator:Q84K72
            Uniprot:Q84K72
        Length = 277

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 87/189 (46%), Positives = 125/189 (66%)

Query:     1 MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
             MQA++K+K RIELL  L +KLN AISVKETQLIGN++LDLE D E+ SG + IVSPK   
Sbjct:    97 MQALDKAKARIELLDTLSSKLNEAISVKETQLIGNISLDLEEDGENTSGGIHIVSPKPES 156

Query:    61 QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNS 120
              E+  E+     ++      G Q+++ +          E +D   +V      ED    S
Sbjct:   157 TEDGVENDHTHLDS-----EGIQLIERNVEDYQ-----ELLDTNNNV-----LEDVSIGS 201

Query:   121 -WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
               +E+SS+  FLENLDQ+L+ IE+ELVT++NV+SL+L++++KPKN+KVQQ  E+LE +R 
Sbjct:   202 ILKEVSSYESFLENLDQKLSRIEAELVTVVNVASLVLNHEDKPKNLKVQQTAEILEEIRR 261

Query:   180 IRGRIADFM 188
             +R RIA+ +
Sbjct:   262 VRERIANII 270


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.131   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       188   0.00087  110 3  11 23  0.40    33
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.61u 0.13s 21.74t   Elapsed:  00:00:01
  Total cpu time:  21.61u 0.13s 21.74t   Elapsed:  00:00:01
  Start:  Thu May  9 17:18:29 2013   End:  Thu May  9 17:18:30 2013

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