Query 029770
Match_columns 188
No_of_seqs 14 out of 16
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 03:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1484 DnaC DNA replication p 61.3 26 0.00056 30.1 6.0 60 123-183 137-199 (254)
2 PF04651 Pox_A12: Poxvirus A12 52.0 12 0.00026 32.6 2.3 19 125-143 9-30 (189)
3 PF04100 Vps53_N: Vps53-like, 39.7 80 0.0017 29.0 5.8 59 125-183 21-79 (383)
4 PF10280 Med11: Mediator compl 38.8 21 0.00046 27.6 1.8 51 136-186 6-66 (117)
5 PF08899 DUF1844: Domain of un 37.7 38 0.00082 25.3 2.8 37 4-40 34-70 (74)
6 PF06005 DUF904: Protein of un 29.0 41 0.00089 24.6 1.8 16 11-26 3-18 (72)
7 cd00890 Prefoldin Prefoldin is 28.1 78 0.0017 23.3 3.2 31 2-32 87-117 (129)
8 PRK06921 hypothetical protein; 26.7 1.6E+02 0.0034 25.4 5.3 43 127-169 154-201 (266)
9 PRK03947 prefoldin subunit alp 26.5 83 0.0018 24.2 3.2 31 2-32 94-124 (140)
10 PRK15422 septal ring assembly 25.1 46 0.001 25.4 1.5 15 11-25 3-17 (79)
11 PF01544 CorA: CorA-like Mg2+ 24.5 1.2E+02 0.0027 24.6 4.0 46 124-182 120-165 (292)
12 PF05308 Mito_fiss_reg: Mitoch 23.6 71 0.0015 28.3 2.6 28 161-188 115-142 (253)
13 PF07751 Abi_2: Abi-like prote 23.5 75 0.0016 24.3 2.5 20 166-185 164-183 (191)
14 PF07996 T4SS: Type IV secreti 23.4 96 0.0021 24.8 3.1 31 2-32 126-156 (195)
15 cd00584 Prefoldin_alpha Prefol 23.4 1.1E+02 0.0023 23.2 3.2 31 2-32 87-117 (129)
16 PRK14011 prefoldin subunit alp 22.3 1.1E+02 0.0023 25.1 3.2 30 2-31 88-117 (144)
17 TIGR00293 prefoldin, archaeal 22.0 1.2E+02 0.0025 22.9 3.2 31 2-32 86-116 (126)
No 1
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=61.31 E-value=26 Score=30.07 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=49.1
Q ss_pred cccchHHHHHHHHhhhh--hhHHHHhh-hhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHHH
Q 029770 123 EISSFSGFLENLDQQLN--DIESELVT-ILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGR 183 (188)
Q Consensus 123 ~iSSY~dFlEhid~qL~--~iE~Elv~-~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iReR 183 (188)
=+..+-+|+..|-.-.+ ..|.+|.. +-++..|++||...+..++|.+.. ++..|-..++|
T Consensus 137 ~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~-~~q~I~~r~~~ 199 (254)
T COG1484 137 LFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADL-LFQLISRRYES 199 (254)
T ss_pred EEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCHHHHHH-HHHHHHHHHhh
Confidence 34568899999988777 48888888 999999999999999999998754 45577766665
No 2
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=51.97 E-value=12 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=13.8
Q ss_pred cchHHHHHHHHh---hhhhhHH
Q 029770 125 SSFSGFLENLDQ---QLNDIES 143 (188)
Q Consensus 125 SSY~dFlEhid~---qL~~iE~ 143 (188)
||||||+|-|.. ||..|=+
T Consensus 9 SSYDDYIeTinKitPQLrtlLa 30 (189)
T PF04651_consen 9 SSYDDYIETINKITPQLRTLLA 30 (189)
T ss_pred ccHHHHHHHHHHhCHHHHHHHH
Confidence 999999998753 5555433
No 3
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=39.67 E-value=80 Score=29.04 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=43.0
Q ss_pred cchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHHH
Q 029770 125 SSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGR 183 (188)
Q Consensus 125 SSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iReR 183 (188)
+.-++++.++..++..++.||.+.+.-+...-.+-.+....=-..+.+|+..|.+||.+
T Consensus 21 ~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~k 79 (383)
T PF04100_consen 21 SNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSK 79 (383)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999988877544332222222225567888888888877
No 4
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=38.78 E-value=21 Score=27.58 Aligned_cols=51 Identities=22% Similarity=0.424 Sum_probs=35.8
Q ss_pred hhhhhhHHHHhhhhhhcceeecCCCCCch-------hh---HHHHHHHHHHHHHHHHHhhh
Q 029770 136 QQLNDIESELVTILNVSSLILDNKEKPKN-------VK---VQQAMELLESVRGIRGRIAD 186 (188)
Q Consensus 136 ~qL~~iE~Elv~~ln~s~l~l~~~ekpkN-------~K---~Qq~~eiLe~I~~iReRIa~ 186 (188)
++|+.||..|+++|+.....+.-=-+|+. .| -+++.+.+.++..+.-++.+
T Consensus 6 ~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~ 66 (117)
T PF10280_consen 6 QQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELRR 66 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999987776554333333 33 35677888888877666543
No 5
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=37.71 E-value=38 Score=25.26 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=34.2
Q ss_pred hHhhHHHHHHHHHHHHhhhhhhchhhhhhhhhhhccc
Q 029770 4 MEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDL 40 (188)
Q Consensus 4 LE~sK~RIElLD~LS~KlsEaISvKe~qLI~nv~~~~ 40 (188)
|+-+|.=|.+|..|..|-..-.+-.|..|+.++++++
T Consensus 34 l~~Ak~tID~L~mL~eKTkGNL~~~E~~lL~~~L~eL 70 (74)
T PF08899_consen 34 LELAKQTIDLLAMLQEKTKGNLDEEEERLLESALYEL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998865
No 6
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.00 E-value=41 Score=24.59 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhhc
Q 029770 11 IELLVELCTKLNGAIS 26 (188)
Q Consensus 11 IElLD~LS~KlsEaIS 26 (188)
+|+|++|-+|++-||-
T Consensus 3 ~E~l~~LE~ki~~ave 18 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVE 18 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6888999999887764
No 7
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.14 E-value=78 Score=23.31 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=27.4
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQL 32 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qL 32 (188)
.|.+-.+.|++.|.+-..++...|.-++.++
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 117 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQI 117 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999998887765
No 8
>PRK06921 hypothetical protein; Provisional
Probab=26.71 E-value=1.6e+02 Score=25.44 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCC-----CchhhHHH
Q 029770 127 FSGFLENLDQQLNDIESELVTILNVSSLILDNKEK-----PKNVKVQQ 169 (188)
Q Consensus 127 Y~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ek-----pkN~K~Qq 169 (188)
+.+++..|-.....++..+..+.++..|++||-+. +...-|++
T Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~ 201 (266)
T PRK06921 154 FVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQI 201 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccCCHHHH
Confidence 45667777655566666788899999999999955 44455664
No 9
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.48 E-value=83 Score=24.23 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=28.0
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQL 32 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qL 32 (188)
.|++-.+.|++.|++...+|.+.|.-+..++
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999999999999999999888775
No 10
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.15 E-value=46 Score=25.41 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhhh
Q 029770 11 IELLVELCTKLNGAI 25 (188)
Q Consensus 11 IElLD~LS~KlsEaI 25 (188)
.|||++|-+||..||
T Consensus 3 ~EvleqLE~KIqqAv 17 (79)
T PRK15422 3 LEVFEKLEAKVQQAI 17 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 488999999998886
No 11
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=24.48 E-value=1.2e+02 Score=24.62 Aligned_cols=46 Identities=24% Similarity=0.565 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHH
Q 029770 124 ISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRG 182 (188)
Q Consensus 124 iSSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iRe 182 (188)
+..|..+++.+..+++.+|.++ ...|.+.-++++..+-..+...|.
T Consensus 120 ~~~~~~~l~~l~~~l~~le~~~-------------~~~~~~~~~~~l~~l~~~l~~l~~ 165 (292)
T PF01544_consen 120 VDDYFEVLEELEDELDELEDEL-------------DDRPSNELLRELFDLRRELSRLRR 165 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------THTTTHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-------------ccccchhhHHHHHHHHHHHHHHHH
Confidence 4567888888888888888887 445556666666665555544443
No 12
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=23.61 E-value=71 Score=28.31 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhcC
Q 029770 161 KPKNVKVQQAMELLESVRGIRGRIADFM 188 (188)
Q Consensus 161 kpkN~K~Qq~~eiLe~I~~iReRIa~i~ 188 (188)
.+.-.-+||+++|-+.+...|.-||+||
T Consensus 115 ~~~~~AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 115 PANEAALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578999999999999999999997
No 13
>PF07751 Abi_2: Abi-like protein; InterPro: IPR011664 Bacteria have numerous mechanisms to resist bacteriophage infection. While most are based on preventing infection in the first place, the abortive infection (Abi) systems provide protection by the abortion of an existing phage infection []. Typically, these Abi systems target a crucial step of phage multiplication such as replication, transcription or translation, and lead to the death of the infected cell. These protein sequences, found in various bacterial species, are similar to those of the AbiD and AbiF proteins from Lactococcus species [, ]. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function [].
Probab=23.54 E-value=75 Score=24.30 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 029770 166 KVQQAMELLESVRGIRGRIA 185 (188)
Q Consensus 166 K~Qq~~eiLe~I~~iReRIa 185 (188)
....+...|+.|+.+|.|||
T Consensus 164 ~~~~~~~~l~~i~~lRN~~A 183 (191)
T PF07751_consen 164 SRKDLSNWLNSIRDLRNRIA 183 (191)
T ss_pred ChhHHHHHHHHHHHHHhHhc
Confidence 36778899999999999998
No 14
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=23.39 E-value=96 Score=24.79 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=25.9
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQL 32 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qL 32 (188)
++.+.+.+|.+=|++|..+|+.|-..|+.+=
T Consensus 126 ~~~~~~~~r~~~i~~L~~~i~~a~d~K~~~D 156 (195)
T PF07996_consen 126 QAYKQAEQRLEQIQQLMQQINSAKDPKEIAD 156 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 5788999999999999999999999998653
No 15
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.37 E-value=1.1e+02 Score=23.20 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=27.0
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQL 32 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qL 32 (188)
.|.+-.+.||+.|.+...+|.+.|.-+..++
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 87 EAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988777654
No 16
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.33 E-value=1.1e+02 Score=25.05 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=26.1
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQ 31 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~q 31 (188)
.|.+-.+.||+.|++...||.++|-=|..+
T Consensus 88 eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~ 117 (144)
T PRK14011 88 EVIEDFKKSVEELDKTKKEGNKKIEELNKE 117 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999766554
No 17
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.99 E-value=1.2e+02 Score=22.85 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=27.6
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQL 32 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qL 32 (188)
+|.+-.+.||+.|++...+|++.|.-|..++
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 116 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRA 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999999999999998887765
Done!