Query 029770
Match_columns 188
No_of_seqs 14 out of 16
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4egw_A Magnesium transport pro 35.5 68 0.0023 25.8 5.6 46 124-182 166-211 (280)
2 2jee_A YIIU; FTSZ, septum, coi 32.4 19 0.00065 26.3 1.6 16 11-26 5-20 (81)
3 4ev6_A Magnesium transport pro 27.0 94 0.0032 25.9 5.2 45 125-182 167-211 (339)
4 2iub_A CORA, divalent cation t 26.2 1E+02 0.0034 26.1 5.3 46 125-183 191-236 (363)
5 3etw_A Adhesin A; antiparallel 23.1 38 0.0013 26.2 1.9 54 134-187 7-60 (119)
6 2bbh_A Divalent cation transpo 21.2 1.2E+02 0.0041 23.8 4.5 45 124-181 181-225 (269)
7 1s94_A S-syntaxin; three helix 19.4 98 0.0034 23.6 3.6 68 114-186 35-103 (180)
8 2i0m_A Phosphate transport sys 18.7 2.3E+02 0.0079 21.2 5.5 51 131-186 45-95 (216)
9 1r8i_A TRAC; VIRB5, helical bu 17.7 90 0.0031 24.9 3.1 31 2-32 124-154 (213)
10 3f1i_S STAM-1, signal transduc 15.9 1.1E+02 0.0037 22.1 2.9 26 2-27 45-70 (77)
No 1
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=35.51 E-value=68 Score=25.80 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHH
Q 029770 124 ISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRG 182 (188)
Q Consensus 124 iSSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iRe 182 (188)
+-.|-++++.|+.++..||.++- ..|.+.-++++..+=+.+...|.
T Consensus 166 vd~y~~~l~~i~~~id~lE~~l~-------------~~~~~~~l~~i~~lrr~l~~lrr 211 (280)
T 4egw_A 166 TRSYSRILMNLEDELEELEDKLL-------------AGYDREVMEKILGLRKTLVYFHK 211 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-------------TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------hCCchhHHHHHHHHHHHHHHHHH
Confidence 35788999999999999998874 24667777777777666665554
No 2
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.43 E-value=19 Score=26.33 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhhhhc
Q 029770 11 IELLVELCTKLNGAIS 26 (188)
Q Consensus 11 IElLD~LS~KlsEaIS 26 (188)
.|||++|-+||..||-
T Consensus 5 ~ElleqLE~KIq~avd 20 (81)
T 2jee_A 5 LEVFEKLEAKVQQAID 20 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999999999886
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.02 E-value=94 Score=25.90 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=32.1
Q ss_pred cchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHH
Q 029770 125 SSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRG 182 (188)
Q Consensus 125 SSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iRe 182 (188)
-.|.+.++.|+.++..||.++- ..|.+.-++++..+-+.+...|.
T Consensus 167 d~~~~~l~~l~~~i~~lE~~l~-------------~~~~~~~l~~l~~lrr~l~~lrr 211 (339)
T 4ev6_A 167 RSYSRILMNLEDELEELEDKLL-------------AGYDREVMEKILGLRKTLVYFHK 211 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHTST-------------TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998764 24556666666666665555554
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=26.21 E-value=1e+02 Score=26.06 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHHH
Q 029770 125 SSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGR 183 (188)
Q Consensus 125 SSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iReR 183 (188)
-.|-++++.|+.++..||.++-+ .|.+.-++++..+-..+-..|.-
T Consensus 191 d~y~~~l~~l~~~id~lE~~v~~-------------~~~~~~l~~l~~lrr~l~~lrr~ 236 (363)
T 2iub_A 191 DDYFVLLEKIDDEIDVLEEEVLE-------------RPEKETVQRTHQLKRNLVELRKT 236 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-------------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------------CCChHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999988632 24455566666666555555543
No 5
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=23.13 E-value=38 Score=26.18 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=28.3
Q ss_pred HHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 029770 134 LDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIADF 187 (188)
Q Consensus 134 id~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iReRIa~i 187 (188)
|..+|+.||.|+..+.+--.....-+.+-...--+++-+.-+.-..|.+||++|
T Consensus 7 i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i 60 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRL 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877765444333333222232333333344444455565543
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=21.20 E-value=1.2e+02 Score=23.84 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=26.7
Q ss_pred ccchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHH
Q 029770 124 ISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIR 181 (188)
Q Consensus 124 iSSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iR 181 (188)
+-.|-++++.|+.++..||.++-+ .|.+.-++++..+=..+..+|
T Consensus 181 vd~y~~~l~~i~~~id~lE~~v~~-------------~~~~~~l~~l~~lrr~l~~lr 225 (269)
T 2bbh_A 181 VDDYFVLLEKIDDEIDVLEEEVLE-------------RPEKETVQRTHQLKRNLVELR 225 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHH
Confidence 346888889999999999987532 123444566655555544444
No 7
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=19.39 E-value=98 Score=23.56 Aligned_cols=68 Identities=7% Similarity=0.324 Sum_probs=35.8
Q ss_pred CCCcCCccccccchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHH-HHHHHHHHHHHHhhh
Q 029770 114 EDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAM-ELLESVRGIRGRIAD 186 (188)
Q Consensus 114 e~~~~n~l~~iSSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~-eiLe~I~~iReRIa~ 186 (188)
++.++..+.++..-...+..|...+++|+.--.++|.. .+.++....++..++ +|....+.||.||..
T Consensus 35 ~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~-----~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~ 103 (180)
T 1s94_A 35 GGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA-----PQTDDQMKEELEELMTDIKRTANKVRGKLKT 103 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555566666666665555555542 234445566776544 477778888888754
No 8
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=18.68 E-value=2.3e+02 Score=21.23 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 029770 131 LENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIAD 186 (188)
Q Consensus 131 lEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iReRIa~ 186 (188)
+...|.+++.++.+|..++.-- -.-++|-..-+..+..+++.++.+ |||++
T Consensus 45 v~~~d~~iD~l~~~I~~~~~~l----la~~~p~a~dlr~i~~~l~i~~dl-ERIgD 95 (216)
T 2i0m_A 45 IINKDHAINQGQSAIELTCARL----LALQQPQVSDLRFVISIMSSCSDL-ERMGD 95 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TTC--CCHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHH----HhccCCcHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4456778999999999887522 123556666677888888877766 67765
No 9
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=17.67 E-value=90 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=27.3
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISVKETQL 32 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qL 32 (188)
++.+.+.+|.+=++.|..+|+.+=..|+.+=
T Consensus 124 ~~y~~~~~rl~~I~~L~~~I~~a~d~K~~aD 154 (213)
T 1r8i_A 124 KAYNNQMQELSDMQALTEQIKSTPDLKSIAD 154 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4678899999999999999999999998653
No 10
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=15.93 E-value=1.1e+02 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.2
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhch
Q 029770 2 QAMEKSKNRIELLVELCTKLNGAISV 27 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISv 27 (188)
..||+++.|--=|-+|+.|+=||+.+
T Consensus 45 ~kLE~iDrkh~~Lteln~~~leaL~l 70 (77)
T 3f1i_S 45 EKLEDIDRKHSELSELNVKVMEALSL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999875
Done!