BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029771
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
Sulfate Ion
pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
Sulfate Ions And Sodium Ion In The Nucleotide Pocket
pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
Length = 325
Score = 206 bits (524), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 131/160 (81%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PVIA +AK +G LTVG+VT PF+FEGR+R +QA GI+++++ VDTLIVIPND++L V
Sbjct: 105 PVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVD 164
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
++TP+ EAF AD++LRQGV+GISD+I PGL+N+DFADV+ IM+N GS+LMGIG ATG+
Sbjct: 165 KNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGE 224
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
RA +AA AI SPLL+ I+ A G++ NITGG++L+L+E
Sbjct: 225 NRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYE 264
>pdb|2VAM|A Chain A, Ftsz B. Subtilis
pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
Resolution
Length = 382
Score = 206 bits (523), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/160 (60%), Positives = 131/160 (81%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PVIA +AK +G LTVG+VT PF+FEGR+R +QA GI+++++ VDTLIVIPND++L V
Sbjct: 115 PVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVD 174
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
++TP+ EAF AD++LRQGV+GISD+I PGL+N+DFADV+ IM+N GS+LMGIG ATG+
Sbjct: 175 KNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGE 234
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
RA +AA AI SPLL+ I+ A G++ NITGG++L+L+E
Sbjct: 235 NRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYE 274
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 125/161 (77%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVIPND+LL V
Sbjct: 120 APVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIV 179
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+LMGIG ++G
Sbjct: 180 DKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSG 239
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE
Sbjct: 240 ENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFE 280
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 125/161 (77%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVIPND+LL V
Sbjct: 116 APVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIV 175
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+LMGIG ++G
Sbjct: 176 DKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSG 235
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE
Sbjct: 236 ENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFE 276
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 125/161 (77%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVIPND+LL V
Sbjct: 106 APVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIV 165
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+LMGIG ++G
Sbjct: 166 DKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSG 225
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE
Sbjct: 226 ENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFE 266
>pdb|3VO9|A Chain A, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|B Chain B, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|C Chain C, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|D Chain D, Staphylococcus Aureus Ftsz Apo-Form (Semet)
Length = 308
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/161 (58%), Positives = 120/161 (74%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK G LTVG+VT PFSFEGR+R QA G+ + + VDTLIVIPND+LL V
Sbjct: 106 APVVAKIAKEXGALTVGVVTRPFSFEGRKRQTQAAAGVEAXKAAVDTLIVIPNDRLLDIV 165
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP EAF AD++LRQGV+GISD+I + G VN+DFADV+ I +N GS+L GIG ++G
Sbjct: 166 DKSTPXXEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIXSNQGSALXGIGVSSG 225
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE
Sbjct: 226 ENRAVEAAKKAISSPLLETSIVGAQGVLXNITGGESLSLFE 266
>pdb|4E6E|A Chain A, Crystal Structure Of A Putative Cell Division Protein Ftsz
(Tfu_1113) From Thermobifida Fusca Yx-Er1 At 2.22 A
Resolution
Length = 314
Score = 186 bits (473), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/160 (57%), Positives = 122/160 (76%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PV+A +A+S+G LT+G+VT PFSFEG+RRA QA+ GIA LR+ VDTLIVIPND+LL+
Sbjct: 113 PVVANIARSLGALTIGVVTRPFSFEGKRRATQAEAGIAXLREEVDTLIVIPNDRLLSISD 172
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
+ V +AF AD +L GV+GI+D+IT PGL+N+DFADV+++ + AGS+L GIG+A G
Sbjct: 173 RQVSVLDAFKAADQVLLSGVQGITDLITTPGLINLDFADVKSVXSGAGSALXGIGSARGD 232
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
RA AA AI SPLL+ I+ A G++ +I GGSDL LFE
Sbjct: 233 DRAVAAAEXAISSPLLEASIDGAHGVLLSIQGGSDLGLFE 272
>pdb|1RLU|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RLU|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RQ2|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ2|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ7|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
pdb|1RQ7|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
Length = 382
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 124/160 (77%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVIPND+LL
Sbjct: 115 PVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGD 174
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
+ + +AF AD++L GV+GI+D+IT PGL+NVDFADV+ IM+ AG++LMGIG+A G+
Sbjct: 175 AAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGE 234
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
R+ AA AI SPLL+ +E A G++ +I GGSDL LFE
Sbjct: 235 GRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFE 274
>pdb|2Q1X|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1X|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1Y|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
pdb|2Q1Y|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
Length = 379
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 124/160 (77%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVIPND+LL
Sbjct: 112 PVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGD 171
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
+ + +AF AD++L GV+GI+D+IT PGL+NVDFADV+ IM+ AG++LMGIG+A G+
Sbjct: 172 AAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGE 231
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
R+ AA AI SPLL+ +E A G++ +I GGSDL LFE
Sbjct: 232 GRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFE 271
>pdb|1OFU|A Chain A, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
pdb|1OFU|B Chain B, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
Length = 320
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI IPN+KLLT +
Sbjct: 114 APIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G ++MG G A+G
Sbjct: 174 GKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASG 233
Query: 130 KTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFE 170
RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E
Sbjct: 234 PNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGE 275
>pdb|2VAW|A Chain A, Ftsz Pseudomonas Aeruginosa Gdp
Length = 394
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI IPN+KLLT +
Sbjct: 114 APIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G ++MG G A+G
Sbjct: 174 GKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASG 233
Query: 130 KTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFE 170
RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E
Sbjct: 234 PNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGE 275
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 140 APVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +++GIG +
Sbjct: 200 P-NMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDS 258
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E
Sbjct: 259 EKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEE 299
>pdb|1W5F|A Chain A, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
pdb|1W5F|B Chain B, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
Length = 353
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
+PVIA +AK MGILTV IVTTPF FEG R +A EG+ LR +VDTLI I N+KL+ +
Sbjct: 124 SPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEEL 183
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNV--DFADVRAIMANAGSSLMGIGTA 127
+ + +AF AD+ L QGV+GIS++IT G + + FA + ++M +AG++++GIG
Sbjct: 184 PRDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVG 243
Query: 128 TGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
G+ RAR+AA A++S L++ +E A+ IV+NIT S++ + E
Sbjct: 244 KGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEE 286
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 140 APVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +++GIG +
Sbjct: 200 P-NMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDS 258
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E
Sbjct: 259 EKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEE 299
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 140 APVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +++GIG +
Sbjct: 200 P-NMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDS 258
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFE 170
+ RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E
Sbjct: 259 EKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEE 299
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 86/137 (62%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PVIA AK MGILTV + T PF FEG R+ +A +G+ L+++ D IVI NDK+ +
Sbjct: 111 PVIAKTAKEMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSN 170
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
++ + +AF D +L + VRGI+ I+ P ++NVDFADVR + G S++G+G G
Sbjct: 171 RTLTIKDAFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGD 230
Query: 131 TRARDAALNAIQSPLLD 147
+A A A+ SPLL+
Sbjct: 231 EKADIAVEKAVTSPLLE 247
>pdb|1VPX|A Chain A, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|B Chain B, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|C Chain C, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|D Chain D, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|E Chain E, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|F Chain F, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|G Chain G, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|H Chain H, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|I Chain I, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|J Chain J, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|K Chain K, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|L Chain L, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|M Chain M, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|N Chain N, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|O Chain O, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|P Chain P, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|Q Chain Q, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|R Chain R, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|S Chain S, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|T Chain T, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
Length = 230
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 50 LRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDF-- 107
++ NV TL+ P +L A + +T V+ DD+ G+R + +I+ I N F
Sbjct: 114 IKTNV-TLVFSPAQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYN--NYGFET 170
Query: 108 ----ADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIER 152
A +R M ++LMG+ T + + P+ D+GIER
Sbjct: 171 EIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLF---KHPMTDLGIER 216
>pdb|2O19|A Chain A, Structure Of E. Coli Topoisomersae Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 5.5
pdb|2O19|B Chain B, Structure Of E. Coli Topoisomersae Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 5.5
pdb|2O54|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 7.0
pdb|2O54|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 7.0
pdb|2O59|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol Ph 8.0
pdb|2O59|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol Ph 8.0
pdb|2O5C|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 5.5
pdb|2O5C|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 5.5
pdb|2O5E|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 7.0
pdb|2O5E|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 7.0
Length = 659
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76
A G+L+VG V TP RR + + +A V IV P D+ TA+ Q +
Sbjct: 187 AGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEAC 246
Query: 77 EAF 79
E +
Sbjct: 247 EPY 249
>pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii
Length = 653
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76
A G+L+VG V TP RR + + +A V IV P D+ TA+ Q +
Sbjct: 187 AGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEAC 246
Query: 77 EAF 79
E +
Sbjct: 247 EPY 249
>pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With
An 8-Base Single-Stranded Dna Oligonucleotide
Length = 659
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76
A G+L+VG V TP RR + + +A V IV P D+ TA+ Q +
Sbjct: 187 AGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEAC 246
Query: 77 EAF 79
E +
Sbjct: 247 EPY 249
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 60 IPNDKLLTAVSQ-STPVTEAFN-LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA 117
IPN+ L+ VSQ + EA N +D + G+ D I + L A +R +
Sbjct: 204 IPNN-LMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC 262
Query: 118 GSSLMGIGTATGKT 131
G + +GT TG +
Sbjct: 263 GCRIYNLGTGTGYS 276
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 60 IPNDKLLTAVSQ-STPVTEAFN-LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA 117
IPN+ L+ VSQ + EA N +D + G+ D I + L A +R +
Sbjct: 204 IPNN-LMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC 262
Query: 118 GSSLMGIGTATGKT 131
G + +GT TG +
Sbjct: 263 GCRIYNLGTGTGYS 276
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 60 IPNDKLLTAVSQ-STPVTEAFN-LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA 117
IPN+ L+ VSQ + EA N +D + G+ D I + L A +R +
Sbjct: 204 IPNN-LMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQC 262
Query: 118 GSSLMGIGTATGKT 131
G + +GT TG +
Sbjct: 263 GCRIYNLGTGTGYS 276
>pdb|1WX0|A Chain A, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|B Chain B, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|C Chain C, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|D Chain D, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|E Chain E, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|F Chain F, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|G Chain G, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|H Chain H, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|I Chain I, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|J Chain J, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
Length = 223
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 27 IVTTPFSFEGRRRAVQ-AQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDI 85
+V P + EG + + + EGI + N+ TLI N LL A + ++ V+ DDI
Sbjct: 90 VVKLPTTEEGLKACKRLSAEGI---KVNM-TLIFSANQALLAARAGASYVSPFLGRVDDI 145
Query: 86 LRQG---VRGISDIITIPGL-VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAI 141
G +R I ++I + L V V A +R ++L+G AT L
Sbjct: 146 SWDGGELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQLL--- 202
Query: 142 QSPLLDIGIER 152
+ PL DIG++R
Sbjct: 203 KHPLTDIGLKR 213
>pdb|3GEC|A Chain A, Crystal Structure Of A Tandem Pas Domain Fragment Of
Drosophila Period
Length = 312
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 26 GIVTTPFSFEGRRRAVQAQEGIASLR-DNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84
G++ P S+E R + +E R DN ++ N + V +TP+ ++ + D+
Sbjct: 101 GVIGRPVSYEPFRLGLTFREAPEEARPDNY----MVSNGTNMLLVICATPIKSSYKVPDE 156
Query: 85 ILRQGVRGISDIITIPGLV-NVDFADVRAI 113
IL Q + T G++ +VD A V A+
Sbjct: 157 ILSQKSPKFAIRHTATGIISHVDSAAVSAL 186
>pdb|3RTY|A Chain A, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|B Chain B, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|C Chain C, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|D Chain D, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|E Chain E, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|F Chain F, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|G Chain G, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|H Chain H, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
Length = 339
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 26 GIVTTPFSFEGRRRAVQAQEGIASLR-DNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84
G++ P S+E R + +E R DN ++ N + V +TP+ ++ + D+
Sbjct: 92 GVIGRPVSYEPFRLGLTFREAPEEARPDNY----MVSNGTNMLLVICATPIKSSYKVPDE 147
Query: 85 ILRQGVRGISDIITIPGLV-NVDFADVRAI 113
IL Q + T G++ +VD A V A+
Sbjct: 148 ILSQKSPKFAIRHTATGIISHVDSAAVSAL 177
>pdb|1WA9|A Chain A, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
pdb|1WA9|B Chain B, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
Length = 368
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 26 GIVTTPFSFEGRRRAVQAQEGIASLR-DNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84
G++ P S+E R + +E R DN ++ N + V +TP+ ++ + D+
Sbjct: 96 GVIGRPVSYEPFRLGLTFREAPEEARPDNY----MVSNGTNMLLVICATPIKSSYKVPDE 151
Query: 85 ILRQGVRGISDIITIPGLV-NVDFADVRAI 113
IL Q + T G++ +VD A V A+
Sbjct: 152 ILSQKSPKFAIRHTATGIISHVDSAAVSAL 181
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 78 AFNLADDILRQG-----VRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIG 125
A +LA + LR+G V G + ++ PG V VDF+ RA+ A+ S G G
Sbjct: 183 ALHLAVESLRKGESSMAVVGGAAVMATPG-VFVDFSRQRALAADGRSKAFGAG 234
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 59 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 116
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 117 RLSPLKEEIARGVDVL 132
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
P GV ++ +L +G V P ++G R ++ + G+ SLR + D + K+ +
Sbjct: 56 PTRKGVEEAEAVL-LGSVGGP-KWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE 113
Query: 71 QSTPVTEAFNLADDIL 86
+ +P+ E D+L
Sbjct: 114 RLSPLKEEIARGVDVL 129
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 26.9 bits (58), Expect = 7.2, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 64 KLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADV------------- 110
K L A+ QST +AF L Q ++ +IT+PG V+ DV
Sbjct: 893 KGLIALRQST---DAFRLKS---LQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDI 946
Query: 111 RAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
A+ NA T R+A + A ++ +GI G+ W G
Sbjct: 947 YAVFVNADEKAREFNLGTAFAHLRNAEVLADENQAGPVGIANPKGLEWTEKG 998
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 26.6 bits (57), Expect = 7.9, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 64 KLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADV------------- 110
K L A+ QST +AF L Q ++ +IT+PG V+ DV
Sbjct: 586 KGLIALRQST---DAFRLKS---LQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDI 639
Query: 111 RAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
A+ NA T R+A + A ++ +GI G+ W G
Sbjct: 640 YAVFVNADEKAREFNLGTAFAHLRNAEVLADENQAGPVGIANPKGLEWTEKG 691
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 26.6 bits (57), Expect = 8.0, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 64 KLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADV------------- 110
K L A+ QST +AF L Q ++ +IT+PG V+ DV
Sbjct: 587 KGLIALRQST---DAFRLKS---LQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDI 640
Query: 111 RAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
A+ NA T R+A + A ++ +GI G+ W G
Sbjct: 641 YAVFVNADEKAREFNLGTAFAHLRNAEVLADENQAGPVGIANPKGLEWTEKG 692
>pdb|3A8E|A Chain A, The Structure Of Axcesd Octamer Complexed With
Cellopentaose
pdb|3A8E|B Chain B, The Structure Of Axcesd Octamer Complexed With
Cellopentaose
pdb|3A8E|C Chain C, The Structure Of Axcesd Octamer Complexed With
Cellopentaose
pdb|3A8E|D Chain D, The Structure Of Axcesd Octamer Complexed With
Cellopentaose
pdb|3AJ2|A Chain A, The Structure Of Axcesd Octamer (C-Terminal His-Tag) From
Acetobacter Xylinum
pdb|3AJ2|B Chain B, The Structure Of Axcesd Octamer (C-Terminal His-Tag) From
Acetobacter Xylinum
pdb|3AJ2|C Chain C, The Structure Of Axcesd Octamer (C-Terminal His-Tag) From
Acetobacter Xylinum
pdb|3AJ2|D Chain D, The Structure Of Axcesd Octamer (C-Terminal His-Tag) From
Acetobacter Xylinum
Length = 162
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 83 DDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQ 142
+++LR+ RG+ I P VD + NA +L+G GT T + + D +L +
Sbjct: 31 NELLREVGRGMGTRIMPPPCQTVDKLQIEL---NALLALIGWGTVTLELLSEDQSLRIVH 87
Query: 143 SPLLDIG 149
L +G
Sbjct: 88 ENLPQVG 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,185,478
Number of Sequences: 62578
Number of extensions: 150825
Number of successful extensions: 422
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 58
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)