Query 029771
Match_columns 188
No_of_seqs 147 out of 1261
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 4.3E-50 9.3E-55 348.8 18.1 176 1-176 107-283 (384)
2 PRK13018 cell division protein 100.0 2.5E-48 5.4E-53 337.4 19.0 175 1-176 122-296 (378)
3 TIGR00065 ftsZ cell division p 100.0 4.3E-48 9.3E-53 334.0 18.7 176 1-177 111-290 (349)
4 cd02191 FtsZ FtsZ is a GTPase 100.0 1.6E-47 3.5E-52 325.3 17.9 175 1-176 94-269 (303)
5 cd02201 FtsZ_type1 FtsZ is a G 100.0 4.8E-47 1E-51 322.8 18.6 176 1-176 94-270 (304)
6 COG0206 FtsZ Cell division GTP 100.0 2.1E-45 4.5E-50 314.0 16.5 175 1-176 105-280 (338)
7 cd02202 FtsZ_type2 FtsZ is a G 100.0 2.3E-40 4.9E-45 286.4 17.3 172 1-175 107-309 (349)
8 COG5023 Tubulin [Cytoskeleton] 100.0 5.9E-32 1.3E-36 229.8 8.7 180 1-181 139-336 (443)
9 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.4E-28 3E-33 211.2 12.6 179 1-181 98-294 (328)
10 PTZ00387 epsilon tubulin; Prov 99.9 3.7E-25 7.9E-30 197.6 11.7 177 1-177 140-359 (465)
11 cd02187 beta_tubulin The tubul 99.9 4.8E-25 1E-29 195.3 11.0 182 1-182 138-336 (425)
12 cd06059 Tubulin The tubulin su 99.9 5.8E-25 1.3E-29 192.5 11.2 181 1-181 98-295 (382)
13 smart00864 Tubulin Tubulin/Fts 99.9 7.2E-25 1.6E-29 175.3 9.5 101 1-101 92-192 (192)
14 PTZ00010 tubulin beta chain; P 99.9 1.8E-24 3.8E-29 192.7 11.1 181 1-181 139-336 (445)
15 PLN00220 tubulin beta chain; P 99.9 1.5E-24 3.3E-29 193.2 10.5 181 1-181 139-336 (447)
16 cd02188 gamma_tubulin Gamma-tu 99.9 1.9E-24 4E-29 191.7 10.7 179 1-179 139-337 (431)
17 cd02190 epsilon_tubulin The tu 99.9 2.6E-24 5.5E-29 188.2 11.2 166 1-177 108-288 (379)
18 cd02186 alpha_tubulin The tubu 99.9 2.8E-24 6.1E-29 190.9 11.1 181 1-181 140-337 (434)
19 PTZ00335 tubulin alpha chain; 99.9 2E-24 4.3E-29 192.4 10.1 178 1-178 141-335 (448)
20 PLN00222 tubulin gamma chain; 99.9 2.1E-24 4.6E-29 192.4 10.0 176 1-176 141-340 (454)
21 PLN00221 tubulin alpha chain; 99.9 4.2E-24 9.1E-29 190.4 11.4 181 1-181 141-338 (450)
22 cd02189 delta_tubulin The tubu 99.8 4.2E-20 9.1E-25 164.7 12.4 129 1-129 135-276 (446)
23 KOG1374 Gamma tubulin [Cytoske 99.8 1.4E-19 3.1E-24 154.6 8.2 130 1-130 141-277 (448)
24 PF00091 Tubulin: Tubulin/FtsZ 99.8 5.2E-19 1.1E-23 143.8 6.9 80 1-80 133-215 (216)
25 KOG1376 Alpha tubulin [Cytoske 99.7 4.1E-18 8.8E-23 145.1 0.5 168 1-175 140-324 (407)
26 KOG1375 Beta tubulin [Cytoskel 99.6 3.2E-16 7E-21 133.7 1.5 159 1-176 84-255 (369)
27 PF12327 FtsZ_C: FtsZ family, 99.6 4.8E-15 1.1E-19 106.0 6.7 61 118-178 1-61 (95)
28 smart00865 Tubulin_C Tubulin/F 99.1 5.5E-10 1.2E-14 81.5 8.0 78 103-180 1-79 (120)
29 cd06060 misato Human Misato sh 97.8 9.3E-05 2E-09 67.2 8.8 122 1-125 160-297 (493)
30 PF13809 Tubulin_2: Tubulin li 96.4 0.0065 1.4E-07 52.8 5.8 53 1-53 156-220 (345)
31 COG4962 CpaF Flp pilus assembl 82.4 1.9 4.2E-05 37.7 4.1 60 1-60 178-255 (355)
32 PF06908 DUF1273: Protein of u 77.5 6.1 0.00013 31.2 5.2 73 12-93 61-133 (177)
33 PF03953 Tubulin_C: Tubulin C- 76.9 9.9 0.00021 27.9 6.0 66 117-182 1-77 (126)
34 PRK13660 hypothetical protein; 75.0 9.7 0.00021 30.3 5.8 81 2-91 49-131 (182)
35 PF00004 AAA: ATPase family as 70.3 29 0.00064 24.4 7.1 64 3-66 5-70 (132)
36 PRK05800 cobU adenosylcobinami 68.0 17 0.00038 28.2 5.7 38 2-39 7-45 (170)
37 PF14881 Tubulin_3: Tubulin do 62.8 26 0.00055 27.7 5.8 79 10-98 92-179 (180)
38 cd00544 CobU Adenosylcobinamid 62.7 40 0.00087 26.2 6.9 38 2-39 5-43 (169)
39 COG2519 GCD14 tRNA(1-methylade 59.2 11 0.00025 31.6 3.3 40 4-53 102-142 (256)
40 PF08704 GCD14: tRNA methyltra 58.5 13 0.00027 31.1 3.5 41 3-53 47-88 (247)
41 COG1083 NeuA CMP-N-acetylneura 57.7 16 0.00035 30.0 3.9 85 10-99 53-139 (228)
42 smart00382 AAA ATPases associa 56.2 62 0.0013 22.1 6.5 22 2-23 8-29 (148)
43 PF00289 CPSase_L_chain: Carba 55.7 75 0.0016 22.9 7.7 96 6-125 9-106 (110)
44 PRK10886 DnaA initiator-associ 51.5 26 0.00057 28.0 4.2 50 5-66 117-169 (196)
45 cd00009 AAA The AAA+ (ATPases 48.7 88 0.0019 21.6 6.7 25 3-27 26-53 (151)
46 PRK00414 gmhA phosphoheptose i 48.5 96 0.0021 24.4 7.0 42 6-62 120-164 (192)
47 COG2074 2-phosphoglycerate kin 48.0 17 0.00037 30.8 2.6 25 1-25 94-118 (299)
48 TIGR01732 tiny_TM_bacill conse 47.8 14 0.00029 19.9 1.3 12 2-13 1-12 (26)
49 PF00175 NAD_binding_1: Oxidor 44.5 13 0.00028 25.7 1.3 11 4-14 3-13 (109)
50 cd02020 CMPK Cytidine monophos 43.3 22 0.00048 25.7 2.5 27 1-27 4-30 (147)
51 PRK04220 2-phosphoglycerate ki 42.3 23 0.00049 30.5 2.6 23 1-23 97-119 (301)
52 KOG2530 Members of tubulin/Fts 41.6 74 0.0016 29.0 5.8 97 10-116 222-328 (483)
53 PRK13937 phosphoheptose isomer 41.1 62 0.0013 25.3 4.8 44 6-64 115-161 (188)
54 PRK12748 3-ketoacyl-(acyl-carr 41.1 1.2E+02 0.0026 24.2 6.7 30 3-32 12-42 (256)
55 PRK04182 cytidylate kinase; Pr 41.1 26 0.00057 26.4 2.6 25 1-25 5-29 (180)
56 COG4821 Uncharacterized protei 41.0 32 0.00069 28.2 3.1 51 10-66 119-170 (243)
57 TIGR00441 gmhA phosphoheptose 39.4 66 0.0014 24.3 4.6 44 6-64 88-134 (154)
58 COG2518 Pcm Protein-L-isoaspar 39.0 26 0.00056 28.5 2.4 15 4-18 80-95 (209)
59 TIGR00177 molyb_syn molybdenum 38.8 1.3E+02 0.0028 22.4 6.1 45 10-60 29-73 (144)
60 COG0572 Udk Uridine kinase [Nu 38.7 24 0.00052 28.9 2.1 64 1-69 13-77 (218)
61 COG1611 Predicted Rossmann fol 37.0 53 0.0012 26.5 3.9 58 6-63 55-120 (205)
62 cd05710 SIS_1 A subgroup of th 36.3 80 0.0017 22.6 4.5 36 13-63 66-101 (120)
63 PF00333 Ribosomal_S5: Ribosom 35.8 40 0.00086 22.3 2.5 25 117-142 32-56 (67)
64 TIGR02173 cyt_kin_arch cytidyl 35.7 35 0.00076 25.5 2.6 25 1-25 5-29 (171)
65 PF00406 ADK: Adenylate kinase 35.2 41 0.00089 24.9 2.9 25 3-27 3-27 (151)
66 COG0794 GutQ Predicted sugar p 34.8 95 0.0021 25.2 5.0 46 5-65 94-142 (202)
67 TIGR01021 rpsE_bact ribosomal 32.9 55 0.0012 25.3 3.2 25 116-141 31-55 (154)
68 PF02826 2-Hacid_dh_C: D-isome 32.8 21 0.00046 27.6 1.0 56 6-61 43-99 (178)
69 cd05006 SIS_GmhA Phosphoheptos 32.3 92 0.002 23.8 4.5 43 7-64 111-156 (177)
70 cd02019 NK Nucleoside/nucleoti 31.8 1.3E+02 0.0028 19.2 4.5 59 2-62 5-63 (69)
71 smart00852 MoCF_biosynth Proba 31.4 2E+02 0.0044 20.9 6.1 47 8-60 18-64 (135)
72 PF02568 ThiI: Thiamine biosyn 30.6 1.4E+02 0.0029 24.0 5.2 55 10-66 16-76 (197)
73 cd00886 MogA_MoaB MogA_MoaB fa 30.5 2E+02 0.0043 21.6 6.0 45 10-60 22-68 (152)
74 PRK12314 gamma-glutamyl kinase 30.5 2.2E+02 0.0047 23.7 6.7 54 12-66 91-145 (266)
75 TIGR03127 RuMP_HxlB 6-phospho 30.3 1.2E+02 0.0027 23.0 4.9 45 6-65 81-128 (179)
76 PF13189 Cytidylate_kin2: Cyti 30.2 38 0.00083 26.3 2.0 23 2-24 5-27 (179)
77 PF00994 MoCF_biosynth: Probab 30.0 1.8E+02 0.004 21.3 5.7 46 10-61 19-64 (144)
78 PF07993 NAD_binding_4: Male s 29.8 57 0.0012 26.4 3.1 76 3-82 3-84 (249)
79 PF08515 TGF_beta_GS: Transfor 29.6 52 0.0011 18.2 1.8 12 4-15 14-25 (29)
80 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.5 1.2E+02 0.0027 21.3 4.5 36 13-63 65-100 (126)
81 COG0593 DnaA ATPase involved i 29.4 4.2E+02 0.0092 23.8 9.6 111 2-116 119-235 (408)
82 PTZ00301 uridine kinase; Provi 29.4 75 0.0016 25.6 3.6 33 1-33 8-44 (210)
83 cd00885 cinA Competence-damage 29.3 2.1E+02 0.0046 22.1 6.1 45 10-60 21-65 (170)
84 PRK05441 murQ N-acetylmuramic 29.2 1E+02 0.0022 26.3 4.6 43 5-62 139-184 (299)
85 smart00467 GS GS motif. Aa app 29.1 45 0.00097 18.6 1.6 13 3-15 12-24 (30)
86 cd00758 MoCF_BD MoCF_BD: molyb 27.9 2.4E+02 0.0052 20.5 6.0 45 10-60 21-65 (133)
87 PTZ00489 glutamate 5-kinase; P 27.6 1.9E+02 0.004 24.2 5.8 49 16-64 90-138 (264)
88 COG0111 SerA Phosphoglycerate 27.6 77 0.0017 27.4 3.6 53 6-60 149-204 (324)
89 PRK13936 phosphoheptose isomer 27.4 1.5E+02 0.0032 23.4 5.0 49 5-65 119-170 (197)
90 PF01368 DHH: DHH family; Int 26.8 2.3E+02 0.005 20.3 5.7 56 7-67 21-76 (145)
91 PF15040 Humanin: Humanin fami 26.2 25 0.00054 18.4 0.2 8 179-186 5-12 (24)
92 PRK08099 bifunctional DNA-bind 26.2 1.6E+02 0.0034 26.2 5.4 66 2-67 225-303 (399)
93 COG0263 ProB Glutamate 5-kinas 26.0 1.8E+02 0.004 25.7 5.6 47 17-63 93-139 (369)
94 PF13207 AAA_17: AAA domain; P 25.7 68 0.0015 22.4 2.5 26 2-27 5-30 (121)
95 COG1102 Cmk Cytidylate kinase 25.7 74 0.0016 25.2 2.8 26 1-26 5-30 (179)
96 PRK14532 adenylate kinase; Pro 25.5 65 0.0014 24.7 2.6 27 1-27 5-31 (188)
97 TIGR00783 ccs citrate carrier 25.4 33 0.00071 30.1 0.9 13 1-13 92-104 (347)
98 PF02283 CobU: Cobinamide kina 25.3 57 0.0012 25.3 2.2 35 3-37 5-40 (167)
99 PRK13938 phosphoheptose isomer 25.2 1.5E+02 0.0033 23.5 4.7 46 5-65 121-169 (196)
100 COG3743 Uncharacterized conser 25.2 26 0.00056 26.5 0.2 21 7-27 73-93 (133)
101 cd01428 ADK Adenylate kinase ( 24.8 82 0.0018 24.0 3.0 25 2-26 5-29 (194)
102 cd06202 Nitric_oxide_synthase 24.7 39 0.00085 30.0 1.3 13 4-16 253-265 (406)
103 COG1064 AdhP Zn-dependent alco 24.2 1.2E+02 0.0025 26.6 4.1 28 4-32 174-201 (339)
104 cd05007 SIS_Etherase N-acetylm 23.6 1.4E+02 0.0031 24.7 4.4 43 5-62 126-171 (257)
105 cd08060 MPN_UPF0172 Mov34/MPN/ 23.5 2.6E+02 0.0056 22.0 5.7 53 14-67 62-117 (182)
106 TIGR01351 adk adenylate kinase 23.5 89 0.0019 24.6 3.0 26 2-27 5-30 (210)
107 PF13704 Glyco_tranf_2_4: Glyc 23.4 2.4E+02 0.0051 18.9 4.9 16 52-67 70-85 (97)
108 PHA00520 packaging NTPase P4 23.4 1.9E+02 0.0041 25.1 5.0 28 3-30 131-159 (330)
109 COG1244 Predicted Fe-S oxidore 23.3 1.9E+02 0.0041 25.4 5.1 48 14-62 196-245 (358)
110 COG0816 Predicted endonuclease 23.2 2.4E+02 0.0051 21.5 5.1 55 12-67 44-100 (141)
111 PF03796 DnaB_C: DnaB-like hel 23.1 85 0.0019 25.6 2.9 57 11-67 160-219 (259)
112 COG1484 DnaC DNA replication p 23.1 2.5E+02 0.0055 23.1 5.8 59 2-61 111-175 (254)
113 PF01135 PCMT: Protein-L-isoas 23.0 63 0.0014 26.1 2.1 18 4-21 80-98 (209)
114 KOG2853 Possible oxidoreductas 22.4 82 0.0018 28.2 2.7 23 2-24 94-116 (509)
115 PRK02240 GTP cyclohydrolase II 21.9 4.8E+02 0.01 21.9 8.9 37 10-51 70-109 (254)
116 cd05005 SIS_PHI Hexulose-6-pho 21.9 1.7E+02 0.0037 22.3 4.3 39 13-66 94-132 (179)
117 PRK00023 cmk cytidylate kinase 21.5 70 0.0015 25.9 2.1 23 1-23 9-31 (225)
118 cd06199 SiR Cytochrome p450- l 21.5 48 0.001 28.8 1.2 14 4-17 220-233 (360)
119 PRK07831 short chain dehydroge 21.3 1.2E+02 0.0026 24.3 3.4 24 3-26 24-47 (262)
120 PF03847 TFIID_20kDa: Transcri 21.2 87 0.0019 20.7 2.1 38 79-116 27-64 (68)
121 cd06207 CyPoR_like NADPH cytoc 21.1 52 0.0011 28.8 1.3 13 4-16 237-249 (382)
122 COG0391 Uncharacterized conser 21.0 92 0.002 27.1 2.8 27 1-30 13-40 (323)
123 PRK01215 competence damage-ind 21.0 3.3E+02 0.0071 22.8 6.0 45 10-60 25-69 (264)
124 PRK11543 gutQ D-arabinose 5-ph 20.6 1.9E+02 0.0041 24.3 4.6 44 5-63 97-143 (321)
125 PF00205 TPP_enzyme_M: Thiamin 20.6 1E+02 0.0022 22.4 2.7 57 7-63 25-87 (137)
126 PRK07952 DNA replication prote 20.5 4.2E+02 0.009 21.8 6.5 31 1-32 104-137 (244)
127 cd06203 methionine_synthase_re 20.4 54 0.0012 29.0 1.3 11 4-14 248-258 (398)
128 cd00984 DnaB_C DnaB helicase C 20.3 1.1E+02 0.0025 24.2 3.1 18 48-65 193-210 (242)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=4.3e-50 Score=348.83 Aligned_cols=176 Identities=61% Similarity=0.985 Sum_probs=172.4
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|++++++|++|+++++|||+||.|||++|++||.++|++|++++|++|+||||+|++.+.+++++.++|+
T Consensus 107 mGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~Af~ 186 (384)
T PRK09330 107 MGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLDAFK 186 (384)
T ss_pred CCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCcc-cCccccccceee
Q 029771 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWN 159 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~-~~~~~a~~~Lv~ 159 (188)
.+|++|++.|++|++++++||++|+||+|++++|+.+|.++||+|+++|++|+.+|+++|+++||++ .++++|+++|++
T Consensus 187 ~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~~~G~a~~G~G~a~g~~ra~~A~~~Ai~spLl~~~~i~~A~~vLv~ 266 (384)
T PRK09330 187 AADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLAMMGIGEASGEDRAREAAEKAISSPLLEDVDISGAKGVLVN 266 (384)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHhcCCeEEEEEEEecCccHHHHHHHHHHhCcCcCCCChhhcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 789999999999
Q ss_pred EecCCCCCHHHHHHHHH
Q 029771 160 ITGGSDLTLFEVSLFLF 176 (188)
Q Consensus 160 i~g~~~~~l~ev~~~~~ 176 (188)
|+++++++++|+++++.
T Consensus 267 I~g~~~l~l~e~~~~~~ 283 (384)
T PRK09330 267 ITGGPDLTLFEVEEAAE 283 (384)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999974
No 2
>PRK13018 cell division protein FtsZ; Provisional
Probab=100.00 E-value=2.5e-48 Score=337.42 Aligned_cols=175 Identities=49% Similarity=0.838 Sum_probs=172.0
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|++++++|+++++++++|+.||.+||++|++||.++|++|++++|++|+||||+|++++ +++++.++|+
T Consensus 122 LGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~af~ 200 (378)
T PRK13018 122 MGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIADAFS 200 (378)
T ss_pred ccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred HHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCcccCccccccceeeE
Q 029771 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNI 160 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~~~~~~a~~~Lv~i 160 (188)
.+|++|+++|++|++++++||.+|+||+|++++|+++|.++||+|+++|++|+.+|+++|+++||++.++++|+++|++|
T Consensus 201 ~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~~~G~a~iG~G~a~g~~r~~~Av~~Al~spLL~~di~~A~~~Lv~I 280 (378)
T PRK13018 201 VADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVAMMGVGEAKGQNRAMEAVRAALANPLLDVDYRGAKGALVHI 280 (378)
T ss_pred HHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhccCCEEEEEEEEecCCcHHHHHHHHHHhCCCcCCChhhhceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHH
Q 029771 161 TGGSDLTLFEVSLFLF 176 (188)
Q Consensus 161 ~g~~~~~l~ev~~~~~ 176 (188)
+|+++++++|+++++.
T Consensus 281 ~g~~~l~l~ev~~~~~ 296 (378)
T PRK13018 281 TGGPDLTLKEANEAAS 296 (378)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 9999999999999974
No 3
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=100.00 E-value=4.3e-48 Score=334.02 Aligned_cols=176 Identities=55% Similarity=0.898 Sum_probs=170.7
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|++++++|++++++++|+|+||.+||.+|+|||.++|++|++++|++|+||||+|++.+.+ +++.++|+
T Consensus 111 lGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~af~ 189 (349)
T TIGR00065 111 MGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLNDAFK 189 (349)
T ss_pred ccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998866 99999999
Q ss_pred HHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccc---hHHHHHHHHhcCCCcccC-ccccccc
Q 029771 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKT---RARDAALNAIQSPLLDIG-IERATGI 156 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~---~~~~A~~~Al~~~ll~~~-~~~a~~~ 156 (188)
.+|++|+++|++|++++|+||.+|+||+|++++|+++|.++||+|+++|++ |+.+|+++|+++||++.+ +++|+++
T Consensus 190 ~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~~~G~a~iG~g~~~g~~~~~r~~~A~~~al~~pLl~~~~i~~A~~~ 269 (349)
T TIGR00065 190 VADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKGA 269 (349)
T ss_pred HHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHhcCCeEEEEEEEecCCcchHHHHHHHHHHHhCCCcCCcccccccEE
Confidence 999999999999999999999999999999999999999999999999999 999999999999999865 9999999
Q ss_pred eeeEecCCCCCHHHHHHHHHh
Q 029771 157 VWNITGGSDLTLFEVSLFLFG 177 (188)
Q Consensus 157 Lv~i~g~~~~~l~ev~~~~~~ 177 (188)
|++|+++++++++|+++++.-
T Consensus 270 Lv~i~~~~~l~l~ev~~~~~~ 290 (349)
T TIGR00065 270 LVHITGGADLTLLEAEEIQEI 290 (349)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 999999999999999999743
No 4
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.6e-47 Score=325.28 Aligned_cols=175 Identities=43% Similarity=0.644 Sum_probs=170.0
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|++++++|+.++++++|+|+||.+|+.+|+|||.+++++|++++|++|+||||+|++.+. +++++++|+
T Consensus 94 lGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~-~~~~~~af~ 172 (303)
T cd02191 94 LGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGE-KASLEGAFD 172 (303)
T ss_pred cCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhh-cCChHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999875 499999999
Q ss_pred HHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCcc-cCccccccceee
Q 029771 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWN 159 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~-~~~~~a~~~Lv~ 159 (188)
.+|++|++.+++|++++++||.+|+||+|++++|+++|.+++|+|+++|++|+++|+++|+++||++ +++++|+++|++
T Consensus 173 ~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~~~G~a~ig~g~~~g~~~~~~a~~~Al~~pll~~~~~~~A~~~Lv~ 252 (303)
T cd02191 173 HADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLLLPCEIEGAEGALLV 252 (303)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCCCCCCCCcccCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 789999999999
Q ss_pred EecCCCCCHHHHHHHHH
Q 029771 160 ITGGSDLTLFEVSLFLF 176 (188)
Q Consensus 160 i~g~~~~~l~ev~~~~~ 176 (188)
|+|+++++++|+++++.
T Consensus 253 i~g~~~l~~~e~~~~~~ 269 (303)
T cd02191 253 MAGPPDLNLKEIERVRK 269 (303)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999999973
No 5
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=4.8e-47 Score=322.76 Aligned_cols=176 Identities=63% Similarity=0.944 Sum_probs=171.4
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|+++++++++++++++|+|+||.+|+.+|+|||.+++++|++++|++++||||+|++.+.+++++.++|+
T Consensus 94 lGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~af~ 173 (304)
T cd02201 94 MGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLEAFK 173 (304)
T ss_pred cCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCccc-Cccccccceee
Q 029771 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDI-GIERATGIVWN 159 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~~-~~~~a~~~Lv~ 159 (188)
.+|++|++++++|++++++||.+|+||+|++++|+++|.+++|+|++++++|+.+|+++|+++||++. ++++|+++|++
T Consensus 174 ~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~~G~a~ig~g~~~g~~r~~~Av~~Al~~pLl~~~~i~~A~~~Lv~ 253 (304)
T cd02201 174 LADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPLLEDDSISGAKGVLVN 253 (304)
T ss_pred HHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCcCcCCCChhcccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 59999999999
Q ss_pred EecCCCCCHHHHHHHHH
Q 029771 160 ITGGSDLTLFEVSLFLF 176 (188)
Q Consensus 160 i~g~~~~~l~ev~~~~~ 176 (188)
|+++++++++|+++++.
T Consensus 254 I~~~~~l~l~e~~~~~~ 270 (304)
T cd02201 254 ITGGSDLTLEEVNEAAE 270 (304)
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 99999999999999974
No 6
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-45 Score=313.95 Aligned_cols=175 Identities=62% Similarity=0.937 Sum_probs=171.3
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|+++|++|++|++|++|+|+||.+||.+|+.||..++++|++++|++|+||||+|++..+ +.++.+||+
T Consensus 105 ~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~~~Af~ 183 (338)
T COG0206 105 MGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPIAEAFN 183 (338)
T ss_pred ecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999876 899999999
Q ss_pred HHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCcc-cCccccccceee
Q 029771 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWN 159 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~-~~~~~a~~~Lv~ 159 (188)
.+|+++.+.+++|++.+..||++|+||+|++++|++.|.+.||+|++++.+|+.+|+++|+++||++ +++++|+++||+
T Consensus 184 ~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G~A~mG~g~~~~~~r~~~a~~~A~~~pLl~~~~i~gA~~~Lv~ 263 (338)
T COG0206 184 EADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALNSPLLDDVDIEGAKGALIN 263 (338)
T ss_pred HHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCCceeEEEeeccchhHHHHHHHHHhcCCcccccccccccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 899999999999
Q ss_pred EecCCCCCHHHHHHHHH
Q 029771 160 ITGGSDLTLFEVSLFLF 176 (188)
Q Consensus 160 i~g~~~~~l~ev~~~~~ 176 (188)
|+|++|+++.|+++++.
T Consensus 264 i~g~~dl~l~ev~~~~~ 280 (338)
T COG0206 264 ITGGKDLTLEEVEEALE 280 (338)
T ss_pred EecCCccCHHHHHHHHH
Confidence 99999999999999974
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=2.3e-40 Score=286.35 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=162.8
Q ss_pred CCCCcCCchHHHHHHHHHHc-CCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSM-GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAF 79 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~-~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af 79 (188)
||||||||++|++++++|+. ++++++++++||.+|+.+++|||.+++++|++++|++|+||||+|++.+ .++.++|
T Consensus 107 lGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~---~~~~~~f 183 (349)
T cd02202 107 LGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKG---ESVEEAY 183 (349)
T ss_pred cCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhc---cchHHHH
Confidence 79999999999999999986 5899999999999999999999999999999999999999999999864 3567899
Q ss_pred HHHhHHHHHhhcccccceec-----CcccccchHHHHHhhccCCccEEEeeecCc-----------------------cc
Q 029771 80 NLADDILRQGVRGISDIITI-----PGLVNVDFADVRAIMANAGSSLMGIGTATG-----------------------KT 131 (188)
Q Consensus 80 ~~~N~~i~~~i~~it~~i~~-----~g~in~D~~dl~~~L~~~g~~~ig~G~a~g-----------------------~~ 131 (188)
+.+|++|++.++.++.++++ ||.+|+||+|++++|+++|.+.+|+|++++ .+
T Consensus 184 ~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~G~~~iG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (349)
T cd02202 184 DRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGYAREDLETGPSDGKFRLREEDDEVDEKESIS 263 (349)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccCCeEEEEEEEEcccccccccccccccccccccccchhh
Confidence 99999999999999999988 999999999999999999999999999987 68
Q ss_pred hHHHHHHHHhcCCCc-ccCccccccceeeEecCCC-CCHHHHHHHH
Q 029771 132 RARDAALNAIQSPLL-DIGIERATGIVWNITGGSD-LTLFEVSLFL 175 (188)
Q Consensus 132 ~~~~A~~~Al~~~ll-~~~~~~a~~~Lv~i~g~~~-~~l~ev~~~~ 175 (188)
|+.+|+++|+.+||+ ++|+++|+++|++|+|+++ ++++|++++.
T Consensus 264 r~~~a~~~a~~~~L~~~~d~~~A~~~Li~i~g~~~~l~~~~~~~~~ 309 (349)
T cd02202 264 RITTLARKAAYGELTVPCDLTSADRALIVIAGPPEELSRKGIEDGR 309 (349)
T ss_pred HHHHHHHHHHcCCCCCCCCcccCcEEEEEEEeCccccCHHHHHHHH
Confidence 999999999999987 6999999999999999995 9999999986
No 8
>COG5023 Tubulin [Cytoskeleton]
Probab=99.97 E-value=5.9e-32 Score=229.81 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=151.7
Q ss_pred CCCCcCCchHH-HHHHHHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAP-VIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p-~ia~~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
+|||||||++. ++.+++.||+ +.+++|+|.|..++.+++|||+.+++++|.+++|+++++||++|+++|.+++.++
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~ 218 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQ 218 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCC
Confidence 69999999955 6688888997 6899999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccchHHHHHHHHhcCCCcccCccccc
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERAT 154 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~~~~~~a~ 154 (188)
+ .|..+|++|+++++++|.++||||.+|.|++.+.++|.| +++||+.++++|-... .++..+....+-+..+++.++
T Consensus 219 ~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~-~~~~~~~~sv~evt~~~f~p~ 297 (443)
T COG5023 219 NPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSD-GSAAHEKNSVSEVTNQLFDPK 297 (443)
T ss_pred CCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccch-hhHHHhcccHHHHHHHHhCcc
Confidence 8 899999999999999999999999999999999999999 5999999999987643 344444444343334445555
Q ss_pred cceee------------EecCCCCCHHHHHHHHHhhhhh
Q 029771 155 GIVWN------------ITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 155 ~~Lv~------------i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
+.||. ..-.++..++||++++....=|
T Consensus 298 N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k 336 (443)
T COG5023 298 NQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSK 336 (443)
T ss_pred cceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhc
Confidence 55544 2334589999999998554444
No 9
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.96 E-value=1.4e-28 Score=211.20 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=153.5
Q ss_pred CCCCcCCchHHHHHHHHHH-cC-CceEEEeecCCCchh-HHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH-
Q 029771 1 MGGGTGTGGAPVIAGVAKS-MG-ILTVGIVTTPFSFEG-RRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT- 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~-~~-~~~isivt~Pf~~Eg-~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~- 76 (188)
||||||||++|++++.+|+ |+ ++++++++.|+.+|+ ..++|||.+++++|.+++|.++++||++|++.+.+.+.+.
T Consensus 98 lgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~ 177 (328)
T cd00286 98 LGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDK 177 (328)
T ss_pred cCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCC
Confidence 7999999999999888876 44 688999999999998 8999999999999999999999999999999886555554
Q ss_pred HHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCcc---------chHHHHHHHHhcCCCc
Q 029771 77 EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGK---------TRARDAALNAIQSPLL 146 (188)
Q Consensus 77 ~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~---------~~~~~A~~~Al~~~ll 146 (188)
.+|+.+|++|++++++++.++|+||.+|+|++++.++|.| ++.+++..|.++.. .++.+++++++++++.
T Consensus 178 ~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (328)
T cd00286 178 PTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQ 257 (328)
T ss_pred CCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCe
Confidence 4999999999999999999999999999999999999999 58999999987753 3688999999998854
Q ss_pred c----cCccccccceeeEecCCCCCHHHHHHHHHhhhhh
Q 029771 147 D----IGIERATGIVWNITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 147 ~----~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
. .+..++..+++.+.| +++.+|+.+.+....-+
T Consensus 258 ~~~~~~~~~~~~~~~~~~rG--~~~~~~v~~~~~~l~~~ 294 (328)
T cd00286 258 MVVCDPTHGGYIAALLLVRG--PVSPSEVREGIARVAPR 294 (328)
T ss_pred eeccCCCccchHHHHHHHhC--CCChHHHHHHHHHHHHh
Confidence 2 346677777887777 45999999987554433
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=99.92 E-value=3.7e-25 Score=197.62 Aligned_cols=177 Identities=14% Similarity=0.218 Sum_probs=137.2
Q ss_pred CCCCcCCchHHHHHHHHH-HcC-CceEEEeecCCCc-hhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH-
Q 029771 1 MGGGTGTGGAPVIAGVAK-SMG-ILTVGIVTTPFSF-EGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT- 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~-~~~-~~~isivt~Pf~~-Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~- 76 (188)
||||||||+++.+++.++ +|+ +.++++.+.|+.. +...++||+.++|++|.+++|.++++|||+|+++|.+.+.+.
T Consensus 140 lgGGTGSGlgs~lle~l~d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~ 219 (465)
T PTZ00387 140 LGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKK 219 (465)
T ss_pred cCCCcchhHHHHHHHHHHHhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccc
Confidence 799999999998877666 555 5566666777754 446799999999999999999999999999999997655554
Q ss_pred ---------------------------HHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecC
Q 029771 77 ---------------------------EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTAT 128 (188)
Q Consensus 77 ---------------------------~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~ 128 (188)
..|+.+|++|++.++++|.++||||.+|+|++|+.++|.| ++++|+..+.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P 299 (465)
T PTZ00387 220 KKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAP 299 (465)
T ss_pred cccccccccccccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCc
Confidence 5899999999999999999999999999999999999999 699999999887
Q ss_pred ccc---------hHHHHHHHHhcCC--CcccCccccccceeeEecCCCCCHHHHHHHHHh
Q 029771 129 GKT---------RARDAALNAIQSP--LLDIGIERATGIVWNITGGSDLTLFEVSLFLFG 177 (188)
Q Consensus 129 g~~---------~~~~A~~~Al~~~--ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~ 177 (188)
-.. +..+..++.++.. +..++....+-+...+..+++....|+++.+..
T Consensus 300 ~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~ 359 (465)
T PTZ00387 300 LVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILR 359 (465)
T ss_pred ccchhhcccccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHH
Confidence 522 2344455555432 333444444443333333447778899887644
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.92 E-value=4.8e-25 Score=195.35 Aligned_cols=182 Identities=15% Similarity=0.214 Sum_probs=138.9
Q ss_pred CCCCcCCchHHHHHH-HHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVIAG-VAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~-~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
||||||||+++.+.+ +..+|+ +.+++|+|.|...|+.+++||+.++|++|.+++|.++++||++|+++|.+.+.+.
T Consensus 138 l~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~ 217 (425)
T cd02187 138 LGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLT 217 (425)
T ss_pred cCCCccccHHHHHHHHHHHhcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCC
Confidence 699999999886655 555676 4455666655556889999999999999999999999999999999997767665
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcCC-
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQSP- 144 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~~- 144 (188)
. +|+.+|++|+++++++|.++||||.+|.|+.++.++|.| +.++|+..+.+|-.. ...+.+++.++..
T Consensus 218 ~~~~~~~N~~ia~~is~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~ 297 (425)
T cd02187 218 NPTYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 297 (425)
T ss_pred CCCHHHHHHHHhccccccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccC
Confidence 4 899999999999999999999999999999999999999 699999999887532 1233344333221
Q ss_pred -CcccCccccccceeeEecCCCCCHHHHHHHHHhhhhhh
Q 029771 145 -LLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFVC 182 (188)
Q Consensus 145 -ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~~ 182 (188)
+..++....+-+...+..+++++..|+.+.+....++.
T Consensus 298 ~~~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~ 336 (425)
T cd02187 298 MMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKN 336 (425)
T ss_pred eeeccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 22233333333322233334799999999987766663
No 12
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.92 E-value=5.8e-25 Score=192.48 Aligned_cols=181 Identities=14% Similarity=0.189 Sum_probs=141.2
Q ss_pred CCCCcCCchHHHHHHHHHH-cC-CceEEEeecCCCchh--HHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVIAGVAKS-MG-ILTVGIVTTPFSFEG--RRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~-~~-~~~isivt~Pf~~Eg--~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
||||||||++|.+++.+++ ++ +.++++++.|+..++ .+++||+.+++++|.+++|.++++||++|.+.+.+.+.+.
T Consensus 98 l~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~ 177 (382)
T cd06059 98 LGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDID 177 (382)
T ss_pred cCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCC
Confidence 7999999999999887775 54 667777778887765 8999999999999999999999999999999887666664
Q ss_pred -HHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcCC-
Q 029771 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQSP- 144 (188)
Q Consensus 77 -~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~~- 144 (188)
.+|..+|++|++++++++.++|+||.+|+|++|+.++|.| +..+|+..+.+|... ...+-.++.++..
T Consensus 178 ~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (382)
T cd06059 178 EPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDN 257 (382)
T ss_pred CCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhccc
Confidence 4999999999999999999999999999999999999999 699999999987532 2334444444322
Q ss_pred -CcccCccccccceeeEecCCCCCHHHHHHHHHhhhhh
Q 029771 145 -LLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 145 -ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
+.+++....+-+...+..+.+....++.+.+....-+
T Consensus 258 ~~~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~ 295 (382)
T cd06059 258 SFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNK 295 (382)
T ss_pred ceeecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 2234443333333333334478888998887554333
No 13
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.92 E-value=7.2e-25 Score=175.26 Aligned_cols=101 Identities=55% Similarity=0.901 Sum_probs=97.0
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
||||||||++|+++++++++++.++++++.||.+|+..++|||.+++++|++++|.++++|||+|++.+.+++++.++|+
T Consensus 92 lgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~~~~~~ 171 (192)
T smart00864 92 MGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPIRPAFK 171 (192)
T ss_pred CCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCchHHHH
Confidence 79999999999999999999988899999999999999999999999999999999999999999999988888888999
Q ss_pred HHhHHHHHhhcccccceecCc
Q 029771 81 LADDILRQGVRGISDIITIPG 101 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~~~g 101 (188)
.+|++|++.++++++++|+||
T Consensus 172 ~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 172 DANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999986
No 14
>PTZ00010 tubulin beta chain; Provisional
Probab=99.91 E-value=1.8e-24 Score=192.67 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=140.6
Q ss_pred CCCCcCCchHHHHHH-HHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVIAG-VAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~-~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
+|||||||+++.+.+ +..+|+ +.+++|+|.|...+..+++||+.++++.|.+++|.+++||||+|+++|.+.+.++
T Consensus 139 l~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~ 218 (445)
T PTZ00010 139 LGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLT 218 (445)
T ss_pred cCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCC
Confidence 699999999876654 555777 4566676666667889999999999999999999999999999999998878877
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcCC-
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQSP- 144 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~~- 144 (188)
. .|+.+|++|++.++++|.++||||.+|.|+.++.++|.| ++++|+..+.+|-.. ...+.+++.++..
T Consensus 219 ~p~~~~lN~lIaq~is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n 298 (445)
T PTZ00010 219 TPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKN 298 (445)
T ss_pred CCCHHHHHHHHHhhccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccc
Confidence 5 899999999999999999999999999999999999999 699999999987532 1222233333211
Q ss_pred -CcccCccccccceeeEecCCCCCHHHHHHHHHhhhhh
Q 029771 145 -LLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 145 -ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
+..++....+-+...+..+++++..|+++.+....++
T Consensus 299 ~~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~ 336 (445)
T PTZ00010 299 MMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNK 336 (445)
T ss_pred eEeecCCCcchhHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 1223433444443333444579999999998765554
No 15
>PLN00220 tubulin beta chain; Provisional
Probab=99.91 E-value=1.5e-24 Score=193.22 Aligned_cols=181 Identities=15% Similarity=0.241 Sum_probs=142.1
Q ss_pred CCCCcCCchHHHH-HHHHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVI-AGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~i-a~~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
||||||||+++.+ .++..+|+ +.+++|+|.|+..|+.+++|||.++|+.|.+++|+++++||++|+++|.+.+.+.
T Consensus 139 l~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~ 218 (447)
T PLN00220 139 LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT 218 (447)
T ss_pred cCCCccccHHHHHHHHHHHhccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCC
Confidence 7999999998855 55666776 5688899998888999999999999999999999999999999999987777776
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccch---------HHHHHHHHhcC--
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKTR---------ARDAALNAIQS-- 143 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~~---------~~~A~~~Al~~-- 143 (188)
. .|+.+|++|++.++++|.++||||.+|.|+.++.++|.| +.++|+..+.+|-... ..+-+++.++.
T Consensus 219 ~~sf~~~N~lIa~~is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n 298 (447)
T PLN00220 219 TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298 (447)
T ss_pred CCChHHHHhHhhccccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhh
Confidence 5 899999999999999999999999999999999999999 6999999998764211 11222222221
Q ss_pred CCcccCccccccceeeEecCCCCCHHHHHHHHHhhhhh
Q 029771 144 PLLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 144 ~ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
.+...+....+.+...+..+++++..|+++.+....++
T Consensus 299 ~l~~~~~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~ 336 (447)
T PLN00220 299 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNK 336 (447)
T ss_pred cccccCCCCchhHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 23233333334443333444579999999998765554
No 16
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.91 E-value=1.9e-24 Score=191.74 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=137.9
Q ss_pred CCCCcCCchHHHHHH-HHHHcC-CceEEEeecCCC---chhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCH
Q 029771 1 MGGGTGTGGAPVIAG-VAKSMG-ILTVGIVTTPFS---FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (188)
Q Consensus 1 lGGGTGsG~~p~ia~-~a~~~~-~~~isivt~Pf~---~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i 75 (188)
||||||||+++.+.+ +..+|+ +..+++.+.|+. .+..+++||+.++++.|.+++|.++++|||+|+++|.+.+.+
T Consensus 139 lgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~ 218 (431)
T cd02188 139 IAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHI 218 (431)
T ss_pred CCCCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCC
Confidence 699999999887765 455676 334455555553 355799999999999999999999999999999999877777
Q ss_pred HH-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc----------hHHHHHHHHhcC
Q 029771 76 TE-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT----------RARDAALNAIQS 143 (188)
Q Consensus 76 ~~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~----------~~~~A~~~Al~~ 143 (188)
+. .|+.+|++|++.++++|.++|+||.+|.|+.++.++|.| ++++|+..+.+|-.. ...+.+++..+.
T Consensus 219 ~~~~~~~~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~ 298 (431)
T cd02188 219 QNPTFDQINSLVSTVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQP 298 (431)
T ss_pred CCCCHHHHHHHHhccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhcc
Confidence 65 899999999999999999999999999999999999999 699999999987432 123444444442
Q ss_pred C--CcccCc-cccccceeeEecCCCCCHHHHHHHHHhhh
Q 029771 144 P--LLDIGI-ERATGIVWNITGGSDLTLFEVSLFLFGCL 179 (188)
Q Consensus 144 ~--ll~~~~-~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~ 179 (188)
. +..++. +..+-+-..+..++++...|+++.+...-
T Consensus 299 ~n~m~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk 337 (431)
T cd02188 299 KNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIR 337 (431)
T ss_pred ccceeecCCCccchhHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1 334444 44444433333444899999998875543
No 17
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.91 E-value=2.6e-24 Score=188.21 Aligned_cols=166 Identities=13% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCCCcCCchHHHHHHHHH-HcC-CceEEEeecCCC-chhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHH
Q 029771 1 MGGGTGTGGAPVIAGVAK-SMG-ILTVGIVTTPFS-FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTE 77 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~-~~~-~~~isivt~Pf~-~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~ 77 (188)
||||||||+++.+.+.++ +|+ +..+++++.|+. .+...++||+.++|++|.+++|.++++|||+|.
T Consensus 108 l~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~----------- 176 (379)
T cd02190 108 LGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITSPYNSVLALRELIEHADCVLPIENQALV----------- 176 (379)
T ss_pred cCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCCCCceecccHHHHHHHHHHHhCCeeEEeccHHHH-----------
Confidence 799999999998877666 555 334444444543 444679999999999999999999999999998
Q ss_pred HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcC--CC
Q 029771 78 AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQS--PL 145 (188)
Q Consensus 78 af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~--~l 145 (188)
+|+.+|++|++.++++|+++|+||.+|+|++|+.++|.| +.++|+..+.+|-.. +..+..++.++. .+
T Consensus 177 ~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m 256 (379)
T cd02190 177 PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQL 256 (379)
T ss_pred HHHHHHHHHHhhhcCccceeecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccce
Confidence 799999999999999999999999999999999999999 699999999876422 345556666642 24
Q ss_pred cccCccccccceeeEecCCCCCHHHHHHHHHh
Q 029771 146 LDIGIERATGIVWNITGGSDLTLFEVSLFLFG 177 (188)
Q Consensus 146 l~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~ 177 (188)
..++....+-+-..+..+++++..|+.+.+..
T Consensus 257 ~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~ 288 (379)
T cd02190 257 IRADPKHGLYLACALLVRGNVSVSDLRRNIER 288 (379)
T ss_pred eecCCCcchHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34454444444333344458999998888754
No 18
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.91 E-value=2.8e-24 Score=190.88 Aligned_cols=181 Identities=12% Similarity=0.161 Sum_probs=141.8
Q ss_pred CCCCcCCchHHHHHH-HHHHcC-CceEEEeecCC--CchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVIAG-VAKSMG-ILTVGIVTTPF--SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~-~a~~~~-~~~isivt~Pf--~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
||||||||+++.+.+ +..+|+ +.++++.+.|+ ..++.+++||+.++|+.|.+++|.++++||++|+++|.+.++++
T Consensus 140 l~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~ 219 (434)
T cd02186 140 FGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIE 219 (434)
T ss_pred cCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCC
Confidence 699999999887765 555677 44555555555 45788999999999999999999999999999999998778777
Q ss_pred -HHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcCC-
Q 029771 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQSP- 144 (188)
Q Consensus 77 -~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~~- 144 (188)
.+|+.+|++|++.++++|.++|+||..|.|++++.++|.| +.++|+..+.+|... +..+.+++.++..
T Consensus 220 ~~~~~~lN~iIa~~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~ 299 (434)
T cd02186 220 RPTYTNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPAN 299 (434)
T ss_pred CCCHHHHHHHHHHHhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccc
Confidence 4999999999999999999999999999999999999999 699999999887432 2344555555432
Q ss_pred -CcccCccccccceeeEecCCCCCHHHHHHHHHhhhhh
Q 029771 145 -LLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 145 -ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
+..++....+-+...+..+++++..|+++.+....++
T Consensus 300 ~m~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~ 337 (434)
T cd02186 300 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTK 337 (434)
T ss_pred eeeecCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3344544444443334444589999999998665444
No 19
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.91 E-value=2e-24 Score=192.39 Aligned_cols=178 Identities=13% Similarity=0.196 Sum_probs=136.3
Q ss_pred CCCCcCCchHHHHHHHH-HHcC-CceEEEeecCC--CchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVIAGVA-KSMG-ILTVGIVTTPF--SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a-~~~~-~~~isivt~Pf--~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
||||||||+++.+.+.. .+|+ +.++++.+.|+ ..|..+++||+.++|+.|.+++|.++++||++|+++|...+.+.
T Consensus 141 l~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~ 220 (448)
T PTZ00335 141 VGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIE 220 (448)
T ss_pred cCCCccchHHHHHHHHHHHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCC
Confidence 69999999988775544 5675 34444444554 56889999999999999999999999999999999997777766
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcCC-
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQSP- 144 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~~- 144 (188)
. +|+.+|++|++.++++|.++|+||.+|.|++++.++|.| +.++|+..+.+|-.. ...+.+.+.++..
T Consensus 221 ~~~~~~~N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n 300 (448)
T PTZ00335 221 RPTYTNLNRLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPAN 300 (448)
T ss_pred CCCHHHHHHHHHhhhcccccccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccc
Confidence 4 899999999999999999999999999999999999999 699999999987532 2344444444322
Q ss_pred -CcccCccccccceeeEecCCCCCHHHHHHHHHhh
Q 029771 145 -LLDIGIERATGIVWNITGGSDLTLFEVSLFLFGC 178 (188)
Q Consensus 145 -ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~ 178 (188)
+..++....+-+...+..+++++..|+.+.+...
T Consensus 301 ~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~ 335 (448)
T PTZ00335 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATI 335 (448)
T ss_pred eeEecCCCccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2233433434333333334489999999887543
No 20
>PLN00222 tubulin gamma chain; Provisional
Probab=99.91 E-value=2.1e-24 Score=192.37 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=135.6
Q ss_pred CCCCcCCchHHHHHHHHH-HcC-CceEEEeecCCC---chhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCH
Q 029771 1 MGGGTGTGGAPVIAGVAK-SMG-ILTVGIVTTPFS---FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~-~~~-~~~isivt~Pf~---~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i 75 (188)
||||||||+++.+.+..+ +|+ +.++++.+.|+. .+..+++||+.++++.|.+++|.++++||++|+++|.+.+.+
T Consensus 141 l~GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i 220 (454)
T PLN00222 141 IAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHL 220 (454)
T ss_pred CCCCccchHHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCC
Confidence 699999999887766555 676 335555555553 455689999999999999999999999999999999888887
Q ss_pred HH-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc----------hHHHHHHHHhcC
Q 029771 76 TE-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT----------RARDAALNAIQS 143 (188)
Q Consensus 76 ~~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~----------~~~~A~~~Al~~ 143 (188)
++ .|+.+|++|++.++++|.++||||.+|.|++++.++|.| ++++|+..+.+|-.. ...+.+++.++.
T Consensus 221 ~~p~~~dlN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~ 300 (454)
T PLN00222 221 ENPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQT 300 (454)
T ss_pred CCCCHHHHHHHhccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcc
Confidence 76 899999999999999999999999999999999999999 699999999987532 124556666643
Q ss_pred C--CcccCccc-----cccceeeEecCCCCCHHHHHHHHH
Q 029771 144 P--LLDIGIER-----ATGIVWNITGGSDLTLFEVSLFLF 176 (188)
Q Consensus 144 ~--ll~~~~~~-----a~~~Lv~i~g~~~~~l~ev~~~~~ 176 (188)
. +..++... .+-+-..+..+++++..|+++.+.
T Consensus 301 ~n~~~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~ 340 (454)
T PLN00222 301 KNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQ 340 (454)
T ss_pred cCceeecCCccccccccchHHHHHHHhCCCCHHHHHHHHH
Confidence 2 22344332 222222223334899999998873
No 21
>PLN00221 tubulin alpha chain; Provisional
Probab=99.91 E-value=4.2e-24 Score=190.36 Aligned_cols=181 Identities=13% Similarity=0.198 Sum_probs=142.6
Q ss_pred CCCCcCCchHHHH-HHHHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAPVI-AGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p~i-a~~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
+|||||||++..+ .++..+|+ +.+++|+|.|...+..+++||+.++++.|.+++|.++++||++|+++|.+.+.++
T Consensus 141 l~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~ 220 (450)
T PLN00221 141 VGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE 220 (450)
T ss_pred cCCCccchHHHHHHHHHHHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCC
Confidence 6999999997655 55666776 5677888877667788999999999999999999999999999999998877777
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccc---------hHHHHHHHHhcCC-
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKT---------RARDAALNAIQSP- 144 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~---------~~~~A~~~Al~~~- 144 (188)
. .|+.+|++|+++++++|.++||||.+|.|++++.++|.| ++++|+..+.+|-.. ...+.+.+.++..
T Consensus 221 ~p~~~dlN~lIa~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~ 300 (450)
T PLN00221 221 RPTYTNLNRLISQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300 (450)
T ss_pred CCCHHHHHHHHhhhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccc
Confidence 6 899999999999999999999999999999999999999 699999999987432 2344444444332
Q ss_pred -CcccCccccccceeeEecCCCCCHHHHHHHHHhhhhh
Q 029771 145 -LLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFV 181 (188)
Q Consensus 145 -ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~ 181 (188)
+..++....+-+...+..+++++..|+.+.+....++
T Consensus 301 ~l~~~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~ 338 (450)
T PLN00221 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338 (450)
T ss_pred eeeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 2233433333333333344589999999998664433
No 22
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.83 E-value=4.2e-20 Score=164.73 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=111.2
Q ss_pred CCCCcCCchHHHHHHHHH-HcC-CceEEEeecCCC-chhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHH
Q 029771 1 MGGGTGTGGAPVIAGVAK-SMG-ILTVGIVTTPFS-FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTE 77 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~-~~~-~~~isivt~Pf~-~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~ 77 (188)
||||||||+++.+.+..+ +|+ +..+++.+.|+. .|..+++||+.+++++|.+++|.++++|||+|.++|.....+.+
T Consensus 135 l~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~ 214 (446)
T cd02189 135 LAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKN 214 (446)
T ss_pred CCCCcchHHHHHHHHHHHHhcCccceeeeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCC
Confidence 699999999887665554 676 446666667764 57789999999999999999999999999999999877666665
Q ss_pred -HHHHHhHHHHHhhcccccceec-C-------cccccchHHHHHhhcc-CCccEEEeeecCc
Q 029771 78 -AFNLADDILRQGVRGISDIITI-P-------GLVNVDFADVRAIMAN-AGSSLMGIGTATG 129 (188)
Q Consensus 78 -af~~~N~~i~~~i~~it~~i~~-~-------g~in~D~~dl~~~L~~-~g~~~ig~G~a~g 129 (188)
.|+.+|++|++.+.+++.++|+ + |..|.|++++.++|.| ++.+|+..+.+|.
T Consensus 215 ~~~~~~N~~Ia~~l~~~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~ 276 (446)
T cd02189 215 VSLSDINKVIAHQLASLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQ 276 (446)
T ss_pred CCHHHHHHHHHHHHHHHhhHhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCc
Confidence 8999999999999999999886 6 3479999999999999 6999999999875
No 23
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=99.79 E-value=1.4e-19 Score=154.61 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=116.2
Q ss_pred CCCCcCCchHHH-HHHHHHHcC---CceEEEeecCC-CchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCH
Q 029771 1 MGGGTGTGGAPV-IAGVAKSMG---ILTVGIVTTPF-SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (188)
Q Consensus 1 lGGGTGsG~~p~-ia~~a~~~~---~~~isivt~Pf-~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i 75 (188)
+.||||||.+.. +.++..+|+ +-+++|+|.-. .+|.++.+||+.++|++|.+++|+++|+||.+|.+++.+.+.+
T Consensus 141 iAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i 220 (448)
T KOG1374|consen 141 IAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHI 220 (448)
T ss_pred ecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcC
Confidence 579999999665 566777776 56889976643 4677899999999999999999999999999999999888999
Q ss_pred HH-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCcc
Q 029771 76 TE-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGK 130 (188)
Q Consensus 76 ~~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~ 130 (188)
++ .|+.+|++++.++++.|..+|+||++|.|+.++..-|.| +.+||+.+|+.|-.
T Consensus 221 ~~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~ 277 (448)
T KOG1374|consen 221 QNPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLT 277 (448)
T ss_pred CCCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCccc
Confidence 88 899999999999999999999999999999999999999 69999999987753
No 24
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.77 E-value=5.2e-19 Score=143.77 Aligned_cols=80 Identities=30% Similarity=0.490 Sum_probs=74.8
Q ss_pred CCCCcCCchHHHHHHHHHHc--CCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH-H
Q 029771 1 MGGGTGTGGAPVIAGVAKSM--GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT-E 77 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~--~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~-~ 77 (188)
||||||||++|++++.+++. ++++++++++|+.+|+.+++|||.++|++|.+++|++|+||||+|++.+.++++++ .
T Consensus 133 lgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~ 212 (216)
T PF00091_consen 133 LGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENP 212 (216)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSH
T ss_pred ccceeccccccccchhhhccccccceeeccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCC
Confidence 79999999999999999986 79999999999988999999999999999999999999999999999998899998 5
Q ss_pred HHH
Q 029771 78 AFN 80 (188)
Q Consensus 78 af~ 80 (188)
+|+
T Consensus 213 ~f~ 215 (216)
T PF00091_consen 213 AFN 215 (216)
T ss_dssp HHH
T ss_pred CcC
Confidence 886
No 25
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=99.68 E-value=4.1e-18 Score=145.15 Aligned_cols=168 Identities=14% Similarity=0.196 Sum_probs=136.9
Q ss_pred CCCCcCCch-HHHHHHHHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGG-APVIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~-~p~ia~~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
.|||||||. ++.+++++.++| ++-+++.|.|-.++....|||+.+.-+...+++|+++.+||++++++|..++.++
T Consensus 140 ~GGgtGsg~~s~lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~ 219 (407)
T KOG1376|consen 140 FGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIE 219 (407)
T ss_pred ccCCCcCCccchhhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccC
Confidence 589999999 678889999988 5678999999999999999999999999999999999999999999998899998
Q ss_pred H-HHHHHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCc---------
Q 029771 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLL--------- 146 (188)
Q Consensus 77 ~-af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll--------- 146 (188)
. .|..+|++++|++++||.+.|++|-.|+|+.+++|+|+|.-+ .++.. +..+|..+.+....+
T Consensus 220 rPtyt~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVpypl------yap~~-s~~~a~he~~sv~~it~~~fe~~~ 292 (407)
T KOG1376|consen 220 RPTYTNLNRLIAQVVSSITASLRFDGALNVDLTEFQTNLVPYPL------YAPVI-SAEKAYHEQLSVAEITNACFEPAN 292 (407)
T ss_pred CccccchhhhHHhhhcccccccccCCcccccHHHHHhhCCCCcc------cccch-hhcccchhhhhHHhhccccccccc
Confidence 8 899999999999999999999999999999999999999543 33322 233333333332222
Q ss_pred ---ccCccccccceeeEecCCCCCHHHHHHHH
Q 029771 147 ---DIGIERATGIVWNITGGSDLTLFEVSLFL 175 (188)
Q Consensus 147 ---~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~ 175 (188)
.+|....|-.+.-+..+.|+-..|++.++
T Consensus 293 qmvkcDP~~gkyma~cllyrgdvvP~~v~~A~ 324 (407)
T KOG1376|consen 293 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAI 324 (407)
T ss_pred cccccCCccchHHHHHHhccCCcCcccchHHH
Confidence 34444444455556677788888898886
No 26
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=99.58 E-value=3.2e-16 Score=133.68 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=129.4
Q ss_pred CCCCcCCchHH-HHHHHHHHcC---CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHH
Q 029771 1 MGGGTGTGGAP-VIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (188)
Q Consensus 1 lGGGTGsG~~p-~ia~~a~~~~---~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~ 76 (188)
+|||||+|... .+.++..++. ..++++++.|. +.++.+||||.+++++|.+++|.++++||++|+++|...+.+.
T Consensus 84 ~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~ 162 (369)
T KOG1375|consen 84 LGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLK 162 (369)
T ss_pred ccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhccc
Confidence 69999999954 5567776664 56889999988 8889999999999999999999999999999999986544333
Q ss_pred HHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc-CCccEEEeeecCccchHHHHHHHHhcCCCcccCcccccc
Q 029771 77 EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN-AGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATG 155 (188)
Q Consensus 77 ~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~-~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~~~~~~a~~ 155 (188)
. -.++|...|+||..|.|+..+..+|.| +++||+..|.++...+..... .|+..|-+.-+.++|++
T Consensus 163 ~------------~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~-~a~tv~eltqq~fdakn 229 (369)
T KOG1375|consen 163 T------------PSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQMFDAKN 229 (369)
T ss_pred C------------CCCceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc-ccccccccccccccCcc
Confidence 2 128899999999999999999999999 599999999998664444344 66666777777888888
Q ss_pred ceeeEe--------cCCCCCHHHHHHHHH
Q 029771 156 IVWNIT--------GGSDLTLFEVSLFLF 176 (188)
Q Consensus 156 ~Lv~i~--------g~~~~~l~ev~~~~~ 176 (188)
.+.... .| +++|+++.|.
T Consensus 230 mm~a~dyLt~a~~~rG---smkevDeqm~ 255 (369)
T KOG1375|consen 230 MMTACDYLTVAAMFRG---SMKEVDEQML 255 (369)
T ss_pred hhhhhhhhhhHHHhcc---chhhhHHHhh
Confidence 776543 33 8999999984
No 27
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=99.57 E-value=4.8e-15 Score=106.04 Aligned_cols=61 Identities=46% Similarity=0.718 Sum_probs=53.9
Q ss_pred CccEEEeeecCccchHHHHHHHHhcCCCcccCccccccceeeEecCCCCCHHHHHHHHHhh
Q 029771 118 GSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVSLFLFGC 178 (188)
Q Consensus 118 g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~ 178 (188)
|.++||+|+++|+||+.+|+++|+++||++.++++|+++||||++++++++.|+++++.-.
T Consensus 1 G~A~iGiG~a~G~~r~~~Av~~Al~spLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i 61 (95)
T PF12327_consen 1 GRAMIGIGEASGENRAEEAVEQALNSPLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEII 61 (95)
T ss_dssp EEEEEEEEEEESTTHHHHHHHHHHTSTTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CeEEEEEEEECCccHHHHHHHHHHhCccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999998543
No 28
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.08 E-value=5.5e-10 Score=81.50 Aligned_cols=78 Identities=50% Similarity=0.669 Sum_probs=69.6
Q ss_pred cccchHHHHHhhccCCccEEEeeecCccchHHHHHHHHhcCCCccc-CccccccceeeEecCCCCCHHHHHHHHHhhhh
Q 029771 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDI-GIERATGIVWNITGGSDLTLFEVSLFLFGCLF 180 (188)
Q Consensus 103 in~D~~dl~~~L~~~g~~~ig~G~a~g~~~~~~A~~~Al~~~ll~~-~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~ 180 (188)
+|+||+|++++|+|.+..++|+|.+.+++|+.+|++.++++|+++. ++..|++.+++++++.+++++|+++++.-..-
T Consensus 1 in~D~~dl~~~L~p~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~a~~~~~~l~~~~~~~~~ev~~~~~~i~~ 79 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKGVLVNITGGPDLTLKEVNEAMERIRE 79 (120)
T ss_pred CCCchHHHHHhccCCCeEEEEEEEecCCChHHHHHHHHHhCcccCCcchhhcCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999888999888887899999999999999975 58889998899999999999999999855443
No 29
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=97.82 E-value=9.3e-05 Score=67.19 Aligned_cols=122 Identities=11% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCCCcCCchHH-HHHHHHHHcCC---ceEEEeecCCC----chhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhh-h--
Q 029771 1 MGGGTGTGGAP-VIAGVAKSMGI---LTVGIVTTPFS----FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTA-V-- 69 (188)
Q Consensus 1 lGGGTGsG~~p-~ia~~a~~~~~---~~isivt~Pf~----~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~-~-- 69 (188)
++||| +|++. ++.++..|+++ .+.++.+.|.. .+...++||+.+++..|.+++|.++.+.-...... .
T Consensus 160 l~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~ 238 (493)
T cd06060 160 LHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGP 238 (493)
T ss_pred cCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCC
Confidence 58999 99865 66778888873 33344444432 14578999999999999999999999986632210 0
Q ss_pred ---cCCCCHH--HHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhccCCccEEEee
Q 029771 70 ---SQSTPVT--EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIG 125 (188)
Q Consensus 70 ---~~~~~i~--~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~~g~~~ig~G 125 (188)
.+.+.++ .-|. .-.+++-++.++|-..|..+.- .+..++...|...|.-++..+
T Consensus 239 p~~~~~l~~d~~~~~h-tSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gRki~~~~ 297 (493)
T cd06060 239 PRTFPYLNYDAELPYH-TSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGRKVVAAG 297 (493)
T ss_pred CCCCcccccCCCCchH-HHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccchhhhhc
Confidence 1111111 2232 2357889999998887776443 578999999988765444444
No 30
>PF13809 Tubulin_2: Tubulin like
Probab=96.43 E-value=0.0065 Score=52.79 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=38.6
Q ss_pred CCCCcCCchHHHHHHHHHH-c------CCceEEEeecCCCchh-----HHhHHHHHHHHHHHHhc
Q 029771 1 MGGGTGTGGAPVIAGVAKS-M------GILTVGIVTTPFSFEG-----RRRAVQAQEGIASLRDN 53 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~-~------~~~~isivt~Pf~~Eg-----~~~~~nA~~~l~~L~~~ 53 (188)
|+||||||+..=++.+++. + ...+.+++.+|..|++ ....-||..+|.+|...
T Consensus 156 laGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 156 LAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred cCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 7899999986655555544 2 2667788888885444 46788999999998754
No 31
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=82.36 E-value=1.9 Score=37.70 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=41.1
Q ss_pred CCCCcCCchHHHHHHHHHHc------------------CCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 1 MGGGTGTGGAPVIAGVAKSM------------------GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~------------------~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
.+||||||-+..+..++... ...++-..|.|-..||..+.--..+--+.|+.-=|.+||-
T Consensus 178 isGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVG 255 (355)
T COG4962 178 ISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVG 255 (355)
T ss_pred EeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEE
Confidence 37999999988876655331 1456778888988888765554555555556666777764
No 32
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=77.50 E-value=6.1 Score=31.22 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHHHHhHHHHHhhc
Q 029771 12 VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVR 91 (188)
Q Consensus 12 ~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~~~N~~i~~~i~ 91 (188)
++.++.++++-+.++++ .||...+..=....+.-+++|.+.+|.++++..+.... ...|..-|+.+.+.-.
T Consensus 61 ~vl~LK~~yp~ikL~~v-~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~--------~~~~~~rn~fMvdhsd 131 (177)
T PF06908_consen 61 VVLELKKEYPEIKLALV-LPFENQGNNWNEANQERYQSILEQADFVVVVSERPYYS--------PGQLQKRNRFMVDHSD 131 (177)
T ss_dssp HHHTTTTT-TT-EEEEE-ESSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB-----------HHHHHHHHHHHHHHSS
T ss_pred HHHHHHhhhhheEEEEE-EcccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCC--------HHHHHHHhHHHHhCCC
Confidence 44445455653344333 58865555445567788999999999999998875442 2357777777766544
Q ss_pred cc
Q 029771 92 GI 93 (188)
Q Consensus 92 ~i 93 (188)
.+
T Consensus 132 ~~ 133 (177)
T PF06908_consen 132 GL 133 (177)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 33
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=76.85 E-value=9.9 Score=27.91 Aligned_cols=66 Identities=5% Similarity=-0.055 Sum_probs=42.9
Q ss_pred CCccEEEeeecCcc---------chHHHHHHHHhcC--CCcccCccccccceeeEecCCCCCHHHHHHHHHhhhhhh
Q 029771 117 AGSSLMGIGTATGK---------TRARDAALNAIQS--PLLDIGIERATGIVWNITGGSDLTLFEVSLFLFGCLFVC 182 (188)
Q Consensus 117 ~g~~~ig~G~a~g~---------~~~~~A~~~Al~~--~ll~~~~~~a~~~Lv~i~g~~~~~l~ev~~~~~~~~~~~ 182 (188)
+++||+..+.++-. ....+-.++.++. .++.+|....+-+-+.+..+++++..||++.+...--+.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~ 77 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKN 77 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhcc
Confidence 47899999998642 2457777777753 355777776555545444445899999999986554443
No 34
>PRK13660 hypothetical protein; Provisional
Probab=75.01 E-value=9.7 Score=30.30 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=48.5
Q ss_pred CCCcCCch--HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHH
Q 029771 2 GGGTGTGG--APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAF 79 (188)
Q Consensus 2 GGGTGsG~--~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af 79 (188)
||--|.-. +=++.++-++++-+.++++ .||..-+.+=....+.-+++|.+.+|.++++...- ++. ...|
T Consensus 49 ggalG~d~wAaEvvl~LK~~yp~lkL~~~-~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~-y~~-------p~q~ 119 (182)
T PRK13660 49 SGQLGVELWAAEVVLELKEEYPDLKLAVI-TPFEEHGENWNEANQEKLANILKQADFVKSISKRP-YES-------PAQF 119 (182)
T ss_pred CCcchHHHHHHHHHHHHHhhCCCeEEEEE-eCccchhhcCCHHHHHHHHHHHHhCCEEEEecCCC-CCC-------hHHH
Confidence 44444443 3455667777664455443 58865554434455777889999999999996643 210 1245
Q ss_pred HHHhHHHHHhhc
Q 029771 80 NLADDILRQGVR 91 (188)
Q Consensus 80 ~~~N~~i~~~i~ 91 (188)
..-|+.+.+.-.
T Consensus 120 ~~rn~fmv~~sd 131 (182)
T PRK13660 120 RQYNQFMLEHTD 131 (182)
T ss_pred HHHHHHHHHccC
Confidence 666666655433
No 35
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.32 E-value=29 Score=24.38 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=42.3
Q ss_pred CCcCCchHHHHHHHHHHcCCceEEEeecCCCch-hHHhHHHHHHHHHHHHhcC-CEEEEEeChhhH
Q 029771 3 GGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFE-GRRRAVQAQEGIASLRDNV-DTLIVIPNDKLL 66 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~E-g~~~~~nA~~~l~~L~~~~-D~vividN~~L~ 66 (188)
|-.|+|=+.++..+++..+...+.+-......+ ......+....+++.++.. .+++++||=...
T Consensus 5 G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 5 GPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp SSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 778999999999999999877666543322211 1122334455566666666 899999995543
No 36
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=68.01 E-value=17 Score=28.18 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=27.1
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEEEee-cCCCchhHHh
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVGIVT-TPFSFEGRRR 39 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~isivt-~Pf~~Eg~~~ 39 (188)
=||+|||=+.+-.+++++.+...+-+.| .|+..|-..|
T Consensus 7 ~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~r 45 (170)
T PRK05800 7 TGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAAR 45 (170)
T ss_pred ECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHH
Confidence 3899999999888899887755555555 3666665444
No 37
>PF14881 Tubulin_3: Tubulin domain
Probab=62.77 E-value=26 Score=27.70 Aligned_cols=79 Identities=9% Similarity=0.075 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCceE--EEeecCCC-ch------hHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHH
Q 029771 10 APVIAGVAKSMGILTV--GIVTTPFS-FE------GRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~i--sivt~Pf~-~E------g~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~ 80 (188)
+.++..+..||++..+ +....|-. .. ...|..|...++.+|.++++.++.+.... + . ...|
T Consensus 92 s~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~--d---~----~s~~- 161 (180)
T PF14881_consen 92 SSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS--D---A----SSNW- 161 (180)
T ss_pred HHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC--c---C----CCcH-
Confidence 5688889999986654 22211111 11 12456899999999999999999998311 1 0 1122
Q ss_pred HHhHHHHHhhccccccee
Q 029771 81 LADDILRQGVRGISDIIT 98 (188)
Q Consensus 81 ~~N~~i~~~i~~it~~i~ 98 (188)
..-.+++.+|.++|-..|
T Consensus 162 htSai~A~aidT~TLp~R 179 (180)
T PF14881_consen 162 HTSAILAAAIDTITLPYR 179 (180)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 233467888877765544
No 38
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=62.68 E-value=40 Score=26.15 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEEEeec-CCCchhHHh
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVGIVTT-PFSFEGRRR 39 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~isivt~-Pf~~Eg~~~ 39 (188)
-||+|||=+..-.+++.+.+..++-+.|. |+..|.+.|
T Consensus 5 ~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~r 43 (169)
T cd00544 5 TGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAER 43 (169)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHH
Confidence 38999999998888888776555555555 555554443
No 39
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=59.22 E-value=11 Score=31.56 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=27.1
Q ss_pred CcCCch-HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhc
Q 029771 4 GTGTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDN 53 (188)
Q Consensus 4 GTGsG~-~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~ 53 (188)
|||||+ +.++++.....|. |++.- .|..++..+.+.+++.
T Consensus 102 GtGSG~lt~~La~~vg~~G~----v~tyE------~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 102 GTGSGALTAYLARAVGPEGH----VTTYE------IREDFAKTARENLSEF 142 (256)
T ss_pred ccCchHHHHHHHHhhCCCce----EEEEE------ecHHHHHHHHHHHHHh
Confidence 899998 7788877766564 33322 3555777777777774
No 40
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=58.53 E-value=13 Score=31.06 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCcCCch-HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhc
Q 029771 3 GGTGTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDN 53 (188)
Q Consensus 3 GGTGsG~-~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~ 53 (188)
-|||||+ +-.+++.....|. |++..|+.+ |. ..+.++++++
T Consensus 47 aGtGSG~lt~~l~r~v~p~G~----v~t~E~~~~---~~---~~A~~n~~~~ 88 (247)
T PF08704_consen 47 AGTGSGSLTHALARAVGPTGH----VYTYEFRED---RA---EKARKNFERH 88 (247)
T ss_dssp E--TTSHHHHHHHHHHTTTSE----EEEEESSHH---HH---HHHHHHHHHT
T ss_pred ecCCcHHHHHHHHHHhCCCeE----EEccccCHH---HH---HHHHHHHHHc
Confidence 4899998 6788887765554 666555433 33 4444445544
No 41
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=57.73 E-value=16 Score=29.98 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCceEEEeecCC--CchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHHHHhHHHH
Q 029771 10 APVIAGVAKSMGILTVGIVTTPF--SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILR 87 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf--~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~~~N~~i~ 87 (188)
++-|.+.|+.+|+.++ +-.|. ..........+..+++......|.++++.-.+=+. ....+++||+..++--.
T Consensus 53 s~~Il~~A~~ygak~~--~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl---~~~~ik~A~e~f~~~~~ 127 (228)
T COG1083 53 SEEILEEAKKYGAKVF--LKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLL---TSLHIKEAFEKFLNNQY 127 (228)
T ss_pred cHHHHHHHHHhCcccc--ccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCcccc---chhHHHHHHHHHhcCCC
Confidence 4567889999998777 33555 33333344578888888888999777776655432 34688899987765544
Q ss_pred Hhhcccccceec
Q 029771 88 QGVRGISDIITI 99 (188)
Q Consensus 88 ~~i~~it~~i~~ 99 (188)
..+-+.++.-++
T Consensus 128 ~sl~sa~e~e~~ 139 (228)
T COG1083 128 DSLFSAVECEHH 139 (228)
T ss_pred cceEEEeecccc
Confidence 444444444443
No 42
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=56.24 E-value=62 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.0
Q ss_pred CCCcCCchHHHHHHHHHHcCCc
Q 029771 2 GGGTGTGGAPVIAGVAKSMGIL 23 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~ 23 (188)
-|.+|||=+-++.++++.....
T Consensus 8 ~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 8 VGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred ECCCCCcHHHHHHHHHhccCCC
Confidence 4889999988888888887643
No 43
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=55.73 E-value=75 Score=22.87 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCch-HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHHHHHhH
Q 029771 6 GTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84 (188)
Q Consensus 6 GsG~-~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af~~~N~ 84 (188)
|+|- +--+.+.+|++|+.+++|.+-|...-. -...+|.++..+...-.+ ..+++++..+.+.+
T Consensus 9 nrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~-------------~~~~ad~~~~~~~~~~~~---~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 9 NRGEIAVRIIRALRELGIETVAVNSNPDTVST-------------HVDMADEAYFEPPGPSPE---SYLNIEAIIDIARK 72 (110)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH-------------HHHHSSEEEEEESSSGGG---TTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCcceeccCchhcccc-------------cccccccceecCcchhhh---hhccHHHHhhHhhh
Confidence 3443 445678888999999999998864211 245799999998444222 23444443322211
Q ss_pred HHHHhhcccccceecCcccccch-HHHHHhhccCCccEEEee
Q 029771 85 ILRQGVRGISDIITIPGLVNVDF-ADVRAIMANAGSSLMGIG 125 (188)
Q Consensus 85 ~i~~~i~~it~~i~~~g~in~D~-~dl~~~L~~~g~~~ig~G 125 (188)
. .-...+||+--+.- .++..-+...|+.|+|..
T Consensus 73 ~--------g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 73 E--------GADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp T--------TESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred h--------cCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 1 23345677532221 233333336788888764
No 44
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=51.55 E-value=26 Score=27.98 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=34.6
Q ss_pred cCCchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhH
Q 029771 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLL 66 (188)
Q Consensus 5 TGsG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~ 66 (188)
++||-++- +++.||+.|+.+|++...|.. .+.++...+|.++.++.+...
T Consensus 117 S~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s------------~l~~l~~~~D~~i~ip~~~~~ 169 (196)
T PRK10886 117 STRGNSRDIVKAVEAAVTRDMTIVALTGYDGG------------ELAGLLGPQDVEIRIPSHRSA 169 (196)
T ss_pred eCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC------------hhhhccccCCEEEEcCCCchH
Confidence 45666553 368889999999999765542 133334458999999987753
No 45
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=48.72 E-value=88 Score=21.64 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=19.1
Q ss_pred CCcCCchHHHHHHHHHHc---CCceEEE
Q 029771 3 GGTGTGGAPVIAGVAKSM---GILTVGI 27 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~---~~~~isi 27 (188)
|.+|+|=+.++.++++.. +..++.+
T Consensus 26 G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 26 GPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 889999998888888876 5544444
No 46
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.45 E-value=96 Score=24.44 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.4
Q ss_pred CCchHH---HHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeC
Q 029771 6 GTGGAP---VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (188)
Q Consensus 6 GsG~~p---~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN 62 (188)
.||-++ -+++.+|+.|+.++++...|.+ .|.+.+|.++.++.
T Consensus 120 ~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s---------------~l~~~ad~~l~~~~ 164 (192)
T PRK00414 120 TSGNSGNIIKAIEAARAKGMKVITLTGKDGG---------------KMAGLADIEIRVPH 164 (192)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC---------------hhHHhCCEEEEeCC
Confidence 456544 3468888899999999665432 25668999999888
No 47
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=47.95 E-value=17 Score=30.84 Aligned_cols=25 Identities=32% Similarity=0.744 Sum_probs=22.0
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceE
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTV 25 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~i 25 (188)
+||-+|.|-+.+-.++|++.|+..+
T Consensus 94 IGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 94 IGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred ecCCCCCChhHHHHHHHHHcCCcee
Confidence 5999999999999999999996543
No 48
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=47.83 E-value=14 Score=19.95 Aligned_cols=12 Identities=50% Similarity=0.864 Sum_probs=9.6
Q ss_pred CCCcCCchHHHH
Q 029771 2 GGGTGTGGAPVI 13 (188)
Q Consensus 2 GGGTGsG~~p~i 13 (188)
|||-|+|++.++
T Consensus 1 ~gg~g~gf~liv 12 (26)
T TIGR01732 1 GGGYGGGFALIV 12 (26)
T ss_pred CCccCcchHHHH
Confidence 688999987655
No 49
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=44.46 E-value=13 Score=25.67 Aligned_cols=11 Identities=45% Similarity=0.746 Sum_probs=8.4
Q ss_pred CcCCchHHHHH
Q 029771 4 GTGTGGAPVIA 14 (188)
Q Consensus 4 GTGsG~~p~ia 14 (188)
++|||++|+++
T Consensus 3 agGtGIaP~~s 13 (109)
T PF00175_consen 3 AGGTGIAPFLS 13 (109)
T ss_dssp EEGGGGHHHHH
T ss_pred ecceeHHHHHH
Confidence 35889999874
No 50
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=43.29 E-value=22 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.4
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEE
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGI 27 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isi 27 (188)
+.|-+|||-+.+..+++++++.+.+..
T Consensus 4 i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecc
Confidence 368899999999999999988766554
No 51
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=42.32 E-value=23 Score=30.49 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.5
Q ss_pred CCCCcCCchHHHHHHHHHHcCCc
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGIL 23 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~ 23 (188)
++|.+|||=+++..++|+.++..
T Consensus 97 I~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999865
No 52
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=41.63 E-value=74 Score=28.98 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcC---CceEEEeecCCC-chhHHhHHH------HHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCHHHHH
Q 029771 10 APVIAGVAKSMG---ILTVGIVTTPFS-FEGRRRAVQ------AQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAF 79 (188)
Q Consensus 10 ~p~ia~~a~~~~---~~~isivt~Pf~-~Eg~~~~~n------A~~~l~~L~~~~D~vividN~~L~~~~~~~~~i~~af 79 (188)
+-.+..+..||+ +++-+..+-|+. .+..+|.+| -..++.+|.+.|+..+.+.--.... ..|
T Consensus 222 s~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~~~---------~~~ 292 (483)
T KOG2530|consen 222 SKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASGLG---------DLW 292 (483)
T ss_pred HHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccccc---------cHH
Confidence 456677777886 556678887885 344455444 6778899999998888765433322 222
Q ss_pred HHHhHHHHHhhcccccceecCcccccchHHHHHhhcc
Q 029771 80 NLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN 116 (188)
Q Consensus 80 ~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~ 116 (188)
. .-.+++.++.++|-..|..+..|+-+.|..+-+..
T Consensus 293 ~-tsA~~a~~~ds~tlptr~~ssS~~~~~d~ls~l~~ 328 (483)
T KOG2530|consen 293 E-TSAKLARAFDSITLPTRLISSSNLRQRDTLSYLGS 328 (483)
T ss_pred H-HHHHHHhhcccccccceecchhHHHHHHHHHHHHH
Confidence 2 22457788888887777777777777777666653
No 53
>PRK13937 phosphoheptose isomerase; Provisional
Probab=41.13 E-value=62 Score=25.34 Aligned_cols=44 Identities=23% Similarity=0.524 Sum_probs=30.3
Q ss_pred CCchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChh
Q 029771 6 GTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDK 64 (188)
Q Consensus 6 GsG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~ 64 (188)
.||-++. +++.+|+.|+.++++...|.+ .|.+.+|.++.++.+.
T Consensus 115 ~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s---------------~L~~~ad~~l~~~~~e 161 (188)
T PRK13937 115 TSGNSPNVLAALEKARELGMKTIGLTGRDGG---------------KMKELCDHLLIVPSDD 161 (188)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC---------------hhHHhCCEEEEeCCCC
Confidence 4555553 467788889999988665442 2456889988887654
No 54
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.13 E-value=1.2e+02 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred CCcC-CchHHHHHHHHHHcCCceEEEeecCC
Q 029771 3 GGTG-TGGAPVIAGVAKSMGILTVGIVTTPF 32 (188)
Q Consensus 3 GGTG-sG~~p~ia~~a~~~~~~~isivt~Pf 32 (188)
|||| +|++..+++...+.|..++.+...|+
T Consensus 12 Gas~~~giG~~la~~l~~~G~~vi~~~r~~~ 42 (256)
T PRK12748 12 GASRLNGIGAAVCRRLAAKGIDIFFTYWSPY 42 (256)
T ss_pred CCCCCCCHHHHHHHHHHHcCCcEEEEcCCcc
Confidence 7787 68888887766667876665554433
No 55
>PRK04182 cytidylate kinase; Provisional
Probab=41.11 E-value=26 Score=26.38 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=20.9
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceE
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTV 25 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~i 25 (188)
+.|..|||-+.+...+++++|...+
T Consensus 5 i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 5 ISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEe
Confidence 3699999999999999999886444
No 56
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=40.99 E-value=32 Score=28.19 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHH-HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhH
Q 029771 10 APV-IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLL 66 (188)
Q Consensus 10 ~p~-ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~ 66 (188)
.|+ +|+.+|+.|+.+|++-.+-++..-.-|.. +=++|.+.+| +|+||.+..
T Consensus 119 vpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~----SGK~Ly~~aD--vVlDN~av~ 170 (243)
T COG4821 119 VPIEVAEYAREKGAKVIAVTSLDYSQSQASRHK----SGKLLYEFAD--VVLDNGAVK 170 (243)
T ss_pred cchHHHHHHHhcCCeEEEEehhhhhhhchhccc----chhHHhhhcc--eeeeCCCcc
Confidence 553 69999999999999977766432222221 2235677777 467887653
No 57
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=39.35 E-value=66 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCchHH---HHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChh
Q 029771 6 GTGGAP---VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDK 64 (188)
Q Consensus 6 GsG~~p---~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~ 64 (188)
.||-++ -+++.+|+.|+.++++...|.+ .|.+.+|.++.++...
T Consensus 88 ~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s---------------~l~~~ad~~l~~~~~~ 134 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKDKGMKTITLAGKDGG---------------KMAGLADIELRVPHFY 134 (154)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---------------chhhhCCEEEEeCCCC
Confidence 455443 3467888889888888654442 2456788888877654
No 58
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.96 E-value=26 Score=28.54 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=13.4
Q ss_pred CcCCch-HHHHHHHHH
Q 029771 4 GTGTGG-APVIAGVAK 18 (188)
Q Consensus 4 GTGsG~-~p~ia~~a~ 18 (188)
|||||- +-++++++.
T Consensus 80 GtGsGY~aAvla~l~~ 95 (209)
T COG2518 80 GTGSGYQAAVLARLVG 95 (209)
T ss_pred CCCchHHHHHHHHHhC
Confidence 899997 779999997
No 59
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=38.81 E-value=1.3e+02 Score=22.44 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
+|.+++..+++|..+....+.|...+... ..++++.+.+|.+|+-
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~------~~l~~~~~~~DliItt 73 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEIR------EILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHHH------HHHHHHHhCCCEEEEC
Confidence 78999999999988888877887655432 2344455578887765
No 60
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=38.72 E-value=24 Score=28.94 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=39.4
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHH-HHHHhcCCEEEEEeChhhHhhh
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGI-ASLRDNVDTLIVIPNDKLLTAV 69 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l-~~L~~~~D~vividN~~L~~~~ 69 (188)
++||+|||=+.+..++...++...+++.+.--.+-... .... ++..-+.|.---+|++-+.+..
T Consensus 13 IaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~-----~~~~~~~~~~n~d~p~A~D~dLl~~~L 77 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQS-----HLPFEERNKINYDHPEAFDLDLLIEHL 77 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchh-----hcCHhhcCCcCccChhhhcHHHHHHHH
Confidence 47999999999999999988855555554433232221 1111 1223356777778888776543
No 61
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=37.00 E-value=53 Score=26.49 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHcCCceEEEee-cCCCch-h------HHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 029771 6 GTGGAPVIAGVAKSMGILTVGIVT-TPFSFE-G------RRRAVQAQEGIASLRDNVDTLIVIPND 63 (188)
Q Consensus 6 GsG~~p~ia~~a~~~~~~~isivt-~Pf~~E-g------~~~~~nA~~~l~~L~~~~D~vividN~ 63 (188)
|+|+=-.+++-|.+.|..+++|.| .|...| . .....+-.+--..+.+.+|.+|+++--
T Consensus 55 ~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG 120 (205)
T COG1611 55 GPGVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGG 120 (205)
T ss_pred chhhhhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCC
Confidence 566655567888888999999976 344333 0 001111122344556778888887753
No 62
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.31 E-value=80 Score=22.61 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=27.1
Q ss_pred HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 029771 13 IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (188)
Q Consensus 13 ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~ 63 (188)
.++.+|+.|+.+++|...|.+ .|.+.+|.++.++.+
T Consensus 66 ~~~~a~~~g~~vi~iT~~~~s---------------~la~~ad~~l~~~~~ 101 (120)
T cd05710 66 AAKFAKEKGATVIGLTDDEDS---------------PLAKLADYVIVYGFE 101 (120)
T ss_pred HHHHHHHcCCeEEEEECCCCC---------------cHHHhCCEEEEccCC
Confidence 367888889988888665553 256788998888877
No 63
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=35.82 E-value=40 Score=22.27 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCccEEEeeecCccchHHHHHHHHhc
Q 029771 117 AGSSLMGIGTATGKTRARDAALNAIQ 142 (188)
Q Consensus 117 ~g~~~ig~G~a~g~~~~~~A~~~Al~ 142 (188)
.|-..+|+|.+++.+ ...|+++|..
T Consensus 32 n~~G~vG~G~gKa~~-~~~Ai~kA~~ 56 (67)
T PF00333_consen 32 NGNGLVGFGVGKAKE-VPDAIRKAKR 56 (67)
T ss_dssp CSSSEEEEEEEEESS-HHHHHHHHHH
T ss_pred cCCCcEecCcccchh-HHHHHHHHHH
Confidence 455678888887765 5555555543
No 64
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=35.74 E-value=35 Score=25.47 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.2
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceE
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTV 25 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~i 25 (188)
+.|..|||-+.+..++++.+|...+
T Consensus 5 i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 5 ISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcee
Confidence 3689999999998889888876543
No 65
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=35.22 E-value=41 Score=24.93 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCcCCchHHHHHHHHHHcCCceEEE
Q 029771 3 GGTGTGGAPVIAGVAKSMGILTVGI 27 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~~~~~isi 27 (188)
|+.|||=+.+..++|+++|..-+++
T Consensus 3 G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 3 GPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp ESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CCCCCChHHHHHHHHHhcCcceech
Confidence 8899999999999999998766653
No 66
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=34.82 E-value=95 Score=25.16 Aligned_cols=46 Identities=30% Similarity=0.446 Sum_probs=35.9
Q ss_pred cCCchHH---HHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 029771 5 TGTGGAP---VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (188)
Q Consensus 5 TGsG~~p---~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L 65 (188)
.|||=+. -+++.+|+.|+.+++|...|.+. |.+.+|.+++++-..=
T Consensus 94 S~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss---------------Lak~aDvvl~ip~~~e 142 (202)
T COG0794 94 SGSGETKELLNLAPKAKRLGAKLIAITSNPDSS---------------LAKAADVVLVIPVKTE 142 (202)
T ss_pred eCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh---------------HHHhcCeEEEccCccc
Confidence 3666544 34688899999999998888753 5678999999998773
No 67
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=32.93 E-value=55 Score=25.28 Aligned_cols=25 Identities=28% Similarity=0.435 Sum_probs=15.0
Q ss_pred cCCccEEEeeecCccchHHHHHHHHh
Q 029771 116 NAGSSLMGIGTATGKTRARDAALNAI 141 (188)
Q Consensus 116 ~~g~~~ig~G~a~g~~~~~~A~~~Al 141 (188)
+.|-..+|+|.+++.+ +.+|+++|+
T Consensus 31 Gn~~G~vG~G~GKa~e-v~~Ai~kA~ 55 (154)
T TIGR01021 31 GDGKGRVGFGFGKAKE-VPDAIKKAV 55 (154)
T ss_pred ECCCCeEeeeeeecch-HHHHHHHHH
Confidence 3466678888887764 444444444
No 68
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.76 E-value=21 Score=27.62 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=31.4
Q ss_pred CCch-HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEe
Q 029771 6 GTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIP 61 (188)
Q Consensus 6 GsG~-~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivid 61 (188)
|.|. +..+++.++.+|..+++.=+.+...+......-....++++.+.+|.+++--
T Consensus 43 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHL 99 (178)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-S
T ss_pred EEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhh
Confidence 6675 7788999999998777775444322211110001246777777788777643
No 69
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=32.33 E-value=92 Score=23.83 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=28.1
Q ss_pred CchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChh
Q 029771 7 TGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDK 64 (188)
Q Consensus 7 sG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~ 64 (188)
||-++. .++.+|+.|+.+++|...|.+ .|.+.+|.++.++...
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s---------------~La~~aD~~l~~~~~~ 156 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGG---------------KLLELADIEIHVPSDD 156 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---------------chhhhCCEEEEeCCCC
Confidence 455443 367777888888888655442 1566788888887543
No 70
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=31.85 E-value=1.3e+02 Score=19.22 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeC
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN 62 (188)
.|..|||=+.+...+++.++-..+.++.--.-.||.....+... ..+.+..|..+.+|-
T Consensus 5 ~G~~gsGKst~~~~l~~~l~~~~~~~i~~~~I~eg~~~~~~~~~--~~~~~~~d~~Iyld~ 63 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQLGGRSVVVLDEIVILEGLYASYKSRD--ARIRDLADLKIYLDA 63 (69)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCEEEEeEEEEecchhhhhhhHH--hhccccccEEEEEEe
Confidence 58889997777777776631111111111222344433333222 456777888888775
No 71
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=31.38 E-value=2e+02 Score=20.86 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 8 GGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 8 G~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
..+|.+++..+++|..+......|...+ +. ...++++.+.+|.++..
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~---~I---~~~l~~~~~~~dliitt 64 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKE---AI---KEALREALERADLVITT 64 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHH---HH---HHHHHHHHhCCCEEEEc
Confidence 4578999999999977666666674332 22 23445555568866554
No 72
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=30.58 E-value=1.4e+02 Score=24.04 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCceEEEeec--CCCchhHHhHHHHHHHHHHHHhcC----CEEEEEeChhhH
Q 029771 10 APVIAGVAKSMGILTVGIVTT--PFSFEGRRRAVQAQEGIASLRDNV----DTLIVIPNDKLL 66 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~--Pf~~Eg~~~~~nA~~~l~~L~~~~----D~vividN~~L~ 66 (188)
+|+-+.+..+.|..+.++.-. ||..+. ...++..-.+.|.++. -...++|...+.
T Consensus 16 SpVAa~lm~krG~~V~~l~f~~~~~~~~~--~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~ 76 (197)
T PF02568_consen 16 SPVAAWLMMKRGCEVIALHFDSPPFTGEK--AREKVEELAEKLSEYSPGHKIRLYVVDFTEVQ 76 (197)
T ss_dssp HHHHHHHHHCBT-EEEEEEEE-TTTSSCC--CHHHHHHHHHHHHCCSTTS-EEEEEECHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCHH--HHHHHHHHHHHHHHhCCCcceeEEEECcHHHH
Confidence 899999999999887776554 565443 3345566666677665 244555555544
No 73
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.49 E-value=2e+02 Score=21.59 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHh--cCCEEEEE
Q 029771 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRD--NVDTLIVI 60 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~--~~D~vivi 60 (188)
+|.+++++++.|..+....+.|...|... ..+++..+ .+|.+|..
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~------~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDKDEIR------EALIEWADEDGVDLILTT 68 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCHHHHH------HHHHHHHhcCCCCEEEEC
Confidence 78899999999987777777777655432 22344444 67766654
No 74
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=30.48 E-value=2.2e+02 Score=23.71 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCceEE-EeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhH
Q 029771 12 VIAGVAKSMGILTVG-IVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLL 66 (188)
Q Consensus 12 ~ia~~a~~~~~~~is-ivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~ 66 (188)
+.++..+++|+.+-- ++|. ..++...+..|+...+++|.+.-..-|+..||.+.
T Consensus 91 ~~~~~~~~~g~~~~q~llT~-~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~ 145 (266)
T PRK12314 91 LYSKFFAEYGIVVAQILLTR-DDFDSPKSRANVKNTFESLLELGILPIVNENDAVA 145 (266)
T ss_pred HHHHHHHHcCCeEEEEEEec-ccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCee
Confidence 345666778876533 3333 34677778889999999998876655665577763
No 75
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.28 E-value=1.2e+02 Score=23.05 Aligned_cols=45 Identities=31% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 029771 6 GTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (188)
Q Consensus 6 GsG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L 65 (188)
.||-++- +++.||+.|+.+++|...|.+. |.+.+|.++.++.+.-
T Consensus 81 ~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~---------------la~~ad~~l~~~~~~~ 128 (179)
T TIGR03127 81 GSGETESLVTVAKKAKEIGATVAAITTNPEST---------------LGKLADVVVEIPAATK 128 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc---------------hHHhCCEEEEeCCccc
Confidence 4565553 3678889999999997666532 4668999998877654
No 76
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=30.21 E-value=38 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.1
Q ss_pred CCCcCCchHHHHHHHHHHcCCce
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILT 24 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~ 24 (188)
++..|||...+..++|+.+|...
T Consensus 5 sr~~Gsgg~~Ia~~LA~~Lg~~~ 27 (179)
T PF13189_consen 5 SRQYGSGGREIAERLAEKLGYPY 27 (179)
T ss_dssp EE-TTSSHHHHHHHHHHHCT--E
T ss_pred CCCCCCChHHHHHHHHHHcCCcc
Confidence 57789999999999999998655
No 77
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=29.98 E-value=1.8e+02 Score=21.33 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEe
Q 029771 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIP 61 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivid 61 (188)
++++++.++++|..+......|...+.. . ..+++..+.+|.+|..=
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i---~---~~l~~~~~~~D~VittG 64 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVPDDPDAI---K---EALRRALDRADLVITTG 64 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEESSHHHH---H---HHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHcCCeeeEEEEECCCHHHH---H---HHHHhhhccCCEEEEcC
Confidence 6889999999998777777777755432 2 33455566678888764
No 78
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=29.78 E-value=57 Score=26.35 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCcCCchHHHHHHHHHHcC-CceEEEeecCCCchhHHhHHHHHH--HHH-HH-HhcCCEEEEEeChhhHhhhcCCCCHHH
Q 029771 3 GGTGTGGAPVIAGVAKSMG-ILTVGIVTTPFSFEGRRRAVQAQE--GIA-SL-RDNVDTLIVIPNDKLLTAVSQSTPVTE 77 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~~-~~~isivt~Pf~~Eg~~~~~nA~~--~l~-~L-~~~~D~vividN~~L~~~~~~~~~i~~ 77 (188)
|+||.=.+-++.+++++.. +.+++++-.+...+...|..++.. ++. .. .+..+.+.++.-|- ..+++.+.+
T Consensus 3 GaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl----~~~~lGL~~ 78 (249)
T PF07993_consen 3 GATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDL----SQPNLGLSD 78 (249)
T ss_dssp -TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--T----TSGGGG--H
T ss_pred CCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccc----cccccCCCh
Confidence 5665545778899998865 566677654333344444433321 111 11 14578888888665 235677766
Q ss_pred -HHHHH
Q 029771 78 -AFNLA 82 (188)
Q Consensus 78 -af~~~ 82 (188)
.|+.+
T Consensus 79 ~~~~~L 84 (249)
T PF07993_consen 79 EDYQEL 84 (249)
T ss_dssp HHHHHH
T ss_pred HHhhcc
Confidence 57655
No 79
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=29.57 E-value=52 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=6.6
Q ss_pred CcCCchHHHHHH
Q 029771 4 GTGTGGAPVIAG 15 (188)
Q Consensus 4 GTGsG~~p~ia~ 15 (188)
|.|||...++.+
T Consensus 14 GSGSGlplLvQR 25 (29)
T PF08515_consen 14 GSGSGLPLLVQR 25 (29)
T ss_dssp TSSSSS-HHHHH
T ss_pred CCCCCchhhhhh
Confidence 566666555554
No 80
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.47 E-value=1.2e+02 Score=21.30 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=25.8
Q ss_pred HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 029771 13 IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (188)
Q Consensus 13 ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~ 63 (188)
.++.+|+.|+.+++|...|.+ .|.+.+|.++.++..
T Consensus 65 ~~~~a~~~g~~vi~iT~~~~s---------------~la~~ad~~l~~~~~ 100 (126)
T cd05008 65 ALRLAKEKGAKTVAITNVVGS---------------TLAREADYVLYLRAG 100 (126)
T ss_pred HHHHHHHcCCeEEEEECCCCC---------------hHHHhCCEEEEecCC
Confidence 367778888888888665552 246678888888763
No 81
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=29.42 E-value=4.2e+02 Score=23.82 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCCcCCchHHHHHHHHHH---cCC--ceEEEeecCCCchhHHh-HHHHHHHHHHHHhcCCEEEEEeChhhHhhhcCCCCH
Q 029771 2 GGGTGTGGAPVIAGVAKS---MGI--LTVGIVTTPFSFEGRRR-AVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~---~~~--~~isivt~Pf~~Eg~~~-~~nA~~~l~~L~~~~D~vividN~~L~~~~~~~~~i 75 (188)
-||+|+|=+-++.-+..+ .+. .++-+-+--|..+-... ..+..+..++-. .+|.+++=|=|.+.. +...-
T Consensus 119 ~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g---k~~~q 194 (408)
T COG0593 119 YGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG---KERTQ 194 (408)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC---ChhHH
Confidence 499999987766444433 332 22222111121111111 112233333333 566665544444422 22333
Q ss_pred HHHHHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc
Q 029771 76 TEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN 116 (188)
Q Consensus 76 ~~af~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~ 116 (188)
.+-|...|.+....-.=+..+-+.|..++.=..++++=|.-
T Consensus 195 eefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 195 EEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 44899999998776655667778888888766888887753
No 82
>PTZ00301 uridine kinase; Provisional
Probab=29.36 E-value=75 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.616 Sum_probs=20.8
Q ss_pred CCCCcCCchHHHHHHHHHHc----CCceEEEeecCCC
Q 029771 1 MGGGTGTGGAPVIAGVAKSM----GILTVGIVTTPFS 33 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~----~~~~isivt~Pf~ 33 (188)
++||+|||=+.+..+++++. +...+++++.-+.
T Consensus 8 IaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 8 ISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred EECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 47999999766665555443 4445556666443
No 83
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=29.27 E-value=2.1e+02 Score=22.10 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
+|.+++..++.|..+..+.+.|...+.. ...++++.+.+|.+|+-
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I------~~~l~~~~~~~dlVItt 65 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRI------AEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHH------HHHHHHHHhCCCEEEEC
Confidence 7899999999998877777778765432 23444455567866653
No 84
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.22 E-value=1e+02 Score=26.26 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=31.7
Q ss_pred cCCchHHHH---HHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeC
Q 029771 5 TGTGGAPVI---AGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (188)
Q Consensus 5 TGsG~~p~i---a~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN 62 (188)
+.||-+|.+ .+.+|+.|+.+++|...|.+ .|.+.+|..|..+.
T Consensus 139 S~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s---------------~La~~aD~~I~~~~ 184 (299)
T PRK05441 139 AASGRTPYVIGALEYARERGALTIGISCNPGS---------------PLSKEADIAIEVVV 184 (299)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC---------------hhhHhCCEEEEcCC
Confidence 567777755 57778889999999866553 34667898888774
No 85
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=29.06 E-value=45 Score=18.61 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=7.6
Q ss_pred CCcCCchHHHHHH
Q 029771 3 GGTGTGGAPVIAG 15 (188)
Q Consensus 3 GGTGsG~~p~ia~ 15 (188)
-|+|||....+.+
T Consensus 12 SGSGSG~p~LvqR 24 (30)
T smart00467 12 SGSGSGLPLLVQR 24 (30)
T ss_pred CCCCCCchhHHHH
Confidence 4777777444443
No 86
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.90 E-value=2.4e+02 Score=20.51 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
+|.++++++++|..+......|...+.. . +.+++..+.+|.+|..
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i---~---~~i~~~~~~~Dlvitt 65 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSI---R---AALIEASREADLVLTT 65 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHH---H---HHHHHHHhcCCEEEEC
Confidence 6888888999986666555566654432 2 2344444457766654
No 87
>PTZ00489 glutamate 5-kinase; Provisional
Probab=27.63 E-value=1.9e+02 Score=24.24 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=34.3
Q ss_pred HHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChh
Q 029771 16 VAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDK 64 (188)
Q Consensus 16 ~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~ 64 (188)
...++|..+..+......++.+.|..|+...+++|.+.-=--|+..|+.
T Consensus 90 ~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~ 138 (264)
T PTZ00489 90 ELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDA 138 (264)
T ss_pred HHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCC
Confidence 3445677887777777778788888899999999998743333334443
No 88
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=27.62 E-value=77 Score=27.38 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=37.0
Q ss_pred CCch-HHHHHHHHHHcCCceEEEeecCCCchh--HHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 6 GTGG-APVIAGVAKSMGILTVGIVTTPFSFEG--RRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 6 GsG~-~p~ia~~a~~~~~~~isivt~Pf~~Eg--~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
|.|. +.-+++.++.+|..+++.= ||..+. .........+|++|.+.+|-+++.
T Consensus 149 G~G~IG~~va~~l~afgm~v~~~d--~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh 204 (324)
T COG0111 149 GLGRIGRAVAKRLKAFGMKVIGYD--PYSPRERAGVDGVVGVDSLDELLAEADILTLH 204 (324)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEC--CCCchhhhccccceecccHHHHHhhCCEEEEc
Confidence 6675 7889999999999888874 443322 112233446799999999988764
No 89
>PRK13936 phosphoheptose isomerase; Provisional
Probab=27.45 E-value=1.5e+02 Score=23.41 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=32.7
Q ss_pred cCCchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 029771 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (188)
Q Consensus 5 TGsG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L 65 (188)
+.||-+|. +++.+|+.|..+++|...|.+ .+.++.+.+|.++.++.++-
T Consensus 119 S~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s------------~l~~l~~~ad~~l~v~~~~~ 170 (197)
T PRK13936 119 STSGNSANVIQAIQAAHEREMHVVALTGRDGG------------KMASLLLPEDVEIRVPAERT 170 (197)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC------------hhhhhhccCCEEEEeCCCcH
Confidence 34565553 368888999999998654431 13335556899998888664
No 90
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=26.82 E-value=2.3e+02 Score=20.29 Aligned_cols=56 Identities=18% Similarity=0.027 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhHh
Q 029771 7 TGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLT 67 (188)
Q Consensus 7 sG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~~ 67 (188)
.|++-.++++.+..++....++..+................ ..|.+|++|......
T Consensus 21 l~Sa~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ii~vD~~~~~~ 76 (145)
T PF01368_consen 21 LGSAIALAKILKRLGKEVTVIPIPEGPPHEYFLFVLKYFEM-----NEDLIILVDCGSPDR 76 (145)
T ss_dssp HHHHHHHHHHHHHTTCTEEEEEECSSTCGHHHHHHHHHTTH-----HHSEEEEES-SSGGG
T ss_pred HHHHHHHHHHHHHcCCCceEEecCCCCcchhhhhhhhhhcc-----cceEEEEecCCcccc
Confidence 45566778889888875554444433332211100111111 129999999977654
No 91
>PF15040 Humanin: Humanin family; PDB: 2GD3_A 1Y32_A.
Probab=26.19 E-value=25 Score=18.35 Aligned_cols=8 Identities=63% Similarity=0.957 Sum_probs=6.3
Q ss_pred hhhhhhcc
Q 029771 179 LFVCLLLS 186 (188)
Q Consensus 179 ~~~~~~~~ 186 (188)
-|-||||+
T Consensus 5 GFsCLlL~ 12 (24)
T PF15040_consen 5 GFSCLLLL 12 (24)
T ss_dssp HHHHHHHH
T ss_pred ccEEEEEE
Confidence 48899876
No 92
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=26.17 E-value=1.6e+02 Score=26.23 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEEEeecCCCch------------hH-HhHHHHHHHHHHHHhcCCEEEEEeChhhHh
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFE------------GR-RRAVQAQEGIASLRDNVDTLIVIPNDKLLT 67 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~isivt~Pf~~E------------g~-~~~~nA~~~l~~L~~~~D~vividN~~L~~ 67 (188)
-||.|||=+.++.++++.+|...+.-+..-+..+ .. ...+.-..........++.++++|-+.+..
T Consensus 225 ~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~a~~~~f~Dt~~~~t 303 (399)
T PRK08099 225 LGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTT 303 (399)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHhcCCeEEEeCChHHH
Confidence 4899999999999999988866543222211110 00 000111111222233568899999998853
No 93
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=26.02 E-value=1.8e+02 Score=25.73 Aligned_cols=47 Identities=28% Similarity=0.277 Sum_probs=31.8
Q ss_pred HHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 029771 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (188)
Q Consensus 17 a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~ 63 (188)
-..||+.+--|.-.--.++.++|..||..+|+.|.+.-=.=|+..||
T Consensus 93 f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINEND 139 (369)
T COG0263 93 FARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINEND 139 (369)
T ss_pred HHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecCCC
Confidence 34466666656555556888999999999999999854333333333
No 94
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=25.70 E-value=68 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.506 Sum_probs=21.4
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEEE
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVGI 27 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~isi 27 (188)
.|-+|||=+.+..++++.+|...+..
T Consensus 5 ~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 58899999999999999988766543
No 95
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=25.69 E-value=74 Score=25.20 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEE
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVG 26 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~is 26 (188)
++|--|||-+.+-.++|+.+|...++
T Consensus 5 IsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 5 ISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred eccCCCCChhHHHHHHHHHhCCceee
Confidence 47889999999999999999976665
No 96
>PRK14532 adenylate kinase; Provisional
Probab=25.48 E-value=65 Score=24.69 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=22.4
Q ss_pred CCCCcCCchHHHHHHHHHHcCCceEEE
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGILTVGI 27 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~~isi 27 (188)
+.|.-|||=+.+-.++++++|...++.
T Consensus 5 ~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 5 LFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 468899999999999999999766653
No 97
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=25.39 E-value=33 Score=30.13 Aligned_cols=13 Identities=46% Similarity=0.897 Sum_probs=11.5
Q ss_pred CCCCcCCchHHHH
Q 029771 1 MGGGTGTGGAPVI 13 (188)
Q Consensus 1 lGGGTGsG~~p~i 13 (188)
||||+|.|+.|.=
T Consensus 92 m~GG~GaGavPLS 104 (347)
T TIGR00783 92 MAGGVGAGIVPLS 104 (347)
T ss_pred cCCCcccchhhHH
Confidence 7999999999864
No 98
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=25.27 E-value=57 Score=25.32 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCcCCchHHHHHHHHHHcCCceEEEeecC-CCchhH
Q 029771 3 GGTGTGGAPVIAGVAKSMGILTVGIVTTP-FSFEGR 37 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~~~~~isivt~P-f~~Eg~ 37 (188)
||..||=+..-.+++.+.+...+=|.|.+ +..|.+
T Consensus 5 GG~rSGKS~~Ae~la~~~~~~~~YiAT~~~~D~em~ 40 (167)
T PF02283_consen 5 GGARSGKSSFAERLALSFGGPVTYIATARPFDEEMR 40 (167)
T ss_dssp ESTTSSHHHHHHHHHTS--SCEEEEESSHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHhcCCCcEEEeCCCCCCHHHH
Confidence 89999999999999988876666676764 433443
No 99
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.25 E-value=1.5e+02 Score=23.54 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=31.8
Q ss_pred cCCchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 029771 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (188)
Q Consensus 5 TGsG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L 65 (188)
+.||-++- +++.||+.|+.++++...|.+ .|.+.+|.++.++.+..
T Consensus 121 S~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s---------------~La~~aD~~l~v~~~e~ 169 (196)
T PRK13938 121 STSGNSMSVLRAAKTARELGVTVVAMTGESGG---------------QLAEFADFLINVPSRDT 169 (196)
T ss_pred cCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---------------hhhhhCCEEEEeCCCch
Confidence 34665553 367888899999998765442 24567899998877664
No 100
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=26 Score=26.50 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.2
Q ss_pred CchHHHHHHHHHHcCCceEEE
Q 029771 7 TGGAPVIAGVAKSMGILTVGI 27 (188)
Q Consensus 7 sG~~p~ia~~a~~~~~~~isi 27 (188)
||++|.+++.+.+.|+.+|+-
T Consensus 73 ~GIGPk~e~~Ln~~GI~tfaQ 93 (133)
T COG3743 73 SGIGPKLEKVLNELGIFTFAQ 93 (133)
T ss_pred cccCHHHHHHHHHcCCccHHH
Confidence 689999999999999877653
No 101
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.80 E-value=82 Score=24.00 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEE
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVG 26 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~is 26 (188)
-|+.|||=+.+..++++++|...++
T Consensus 5 ~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 5 LGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 4889999998889999998876655
No 102
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=24.65 E-value=39 Score=29.95 Aligned_cols=13 Identities=46% Similarity=0.485 Sum_probs=10.0
Q ss_pred CcCCchHHHHHHH
Q 029771 4 GTGTGGAPVIAGV 16 (188)
Q Consensus 4 GTGsG~~p~ia~~ 16 (188)
|+|||+||+.+=+
T Consensus 253 a~GTGIAPfrsfl 265 (406)
T cd06202 253 GPGTGIAPFRSFW 265 (406)
T ss_pred cCCcChHHHHHHH
Confidence 6789999987533
No 103
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.19 E-value=1.2e+02 Score=26.63 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred CcCCchHHHHHHHHHHcCCceEEEeecCC
Q 029771 4 GTGTGGAPVIAGVAKSMGILTVGIVTTPF 32 (188)
Q Consensus 4 GTGsG~~p~ia~~a~~~~~~~isivt~Pf 32 (188)
|.| |.+-...++||.+|+.++++-..|.
T Consensus 174 G~G-GlGh~avQ~Aka~ga~Via~~~~~~ 201 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMGAEVIAITRSEE 201 (339)
T ss_pred CCc-HHHHHHHHHHHHcCCeEEEEeCChH
Confidence 455 6788888999999988888855433
No 104
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=23.62 E-value=1.4e+02 Score=24.67 Aligned_cols=43 Identities=30% Similarity=0.420 Sum_probs=30.6
Q ss_pred cCCchHHHH---HHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeC
Q 029771 5 TGTGGAPVI---AGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (188)
Q Consensus 5 TGsG~~p~i---a~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN 62 (188)
+.||-+|.+ ++.||+.|+.+++|.-.|.+. |.+.+|.++.+..
T Consensus 126 S~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~---------------L~~~aD~~I~~~~ 171 (257)
T cd05007 126 AASGRTPYVLGALRYARARGALTIGIACNPGSP---------------LLQLADIAIALIT 171 (257)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh---------------hHHhCCEEEEcCC
Confidence 457777754 577788899999997665522 4556888888763
No 105
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=23.53 E-value=2.6e+02 Score=22.02 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=35.8
Q ss_pred HHHHHHcCCceEEEeecCCCc-hhHHhHHHHHHHHHHHHhcC--CEEEEEeChhhHh
Q 029771 14 AGVAKSMGILTVGIVTTPFSF-EGRRRAVQAQEGIASLRDNV--DTLIVIPNDKLLT 67 (188)
Q Consensus 14 a~~a~~~~~~~isivt~Pf~~-Eg~~~~~nA~~~l~~L~~~~--D~vividN~~L~~ 67 (188)
.+.+++.|.-.++++-..-.+ +.... --|..=.++|.++. -.++++||+++..
T Consensus 62 e~~~~~~gl~IvG~Yhsh~~~~d~~~~-~~a~kIadki~~~~~~a~ll~vdn~~l~~ 117 (182)
T cd08060 62 DAYCKSSGLVIVGYYQANERLDDSSPS-PVAKKIADKIAENFSNACLLMVDNEKLTL 117 (182)
T ss_pred HHHHHHCCCEEEEEEecCCcccCCCCc-HHHHHHHHHHHHhCCCCEEEEEeCccccc
Confidence 456677788888998875543 33222 33555567777765 6788999999954
No 106
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=23.50 E-value=89 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.1
Q ss_pred CCCcCCchHHHHHHHHHHcCCceEEE
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILTVGI 27 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~isi 27 (188)
-|+.|||=+.+-..+++.+|...++.
T Consensus 5 ~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 5 LGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 48899999999899999999777764
No 107
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=23.42 E-value=2.4e+02 Score=18.86 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.6
Q ss_pred hcCCEEEEEeChhhHh
Q 029771 52 DNVDTLIVIPNDKLLT 67 (188)
Q Consensus 52 ~~~D~vividN~~L~~ 67 (188)
...|-++.+|.|.++.
T Consensus 70 ~~~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 70 FDADWVLFLDADEFLV 85 (97)
T ss_pred CCCCEEEEEeeeEEEe
Confidence 4579999999999875
No 108
>PHA00520 packaging NTPase P4
Probab=23.39 E-value=1.9e+02 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=21.3
Q ss_pred CCcCCchHHHHHHHHHHcC-CceEEEeec
Q 029771 3 GGTGTGGAPVIAGVAKSMG-ILTVGIVTT 30 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~~-~~~isivt~ 30 (188)
||||||=+|.+-.++.+.| ..-++++-.
T Consensus 131 G~t~sGKT~~~na~a~~vgg~d~y~vIR~ 159 (330)
T PHA00520 131 GGTGSGKTPLLNALAPDVGGGDKYAVIRW 159 (330)
T ss_pred ccCCCCCchhhhhhhhhhcCCCceeEEEe
Confidence 8999999999977787764 556666554
No 109
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.27 E-value=1.9e+02 Score=25.44 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=36.5
Q ss_pred HHHHHHcC--CceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeC
Q 029771 14 AGVAKSMG--ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (188)
Q Consensus 14 a~~a~~~~--~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN 62 (188)
+++++++| ..++..+--||-+|.. ..+-+..++...+..+|.+=+-+-
T Consensus 196 ~~~ir~~g~~vktYlllKP~FlSE~e-AI~D~i~Si~~~~~~~d~iSinpt 245 (358)
T COG1244 196 AEIIRNYGAKVKTYLLLKPPFLSEKE-AIEDVISSIVAAKPGTDTISINPT 245 (358)
T ss_pred HHHHHHcCCceeEEEEecccccChHH-HHHHHHHHHHHhccCCCeEEeccc
Confidence 57888887 5677787779999875 577888888888888887655443
No 110
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=23.16 E-value=2.4e+02 Score=21.46 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCceEEEeecCCCchhHH--hHHHHHHHHHHHHhcCCEEEEEeChhhHh
Q 029771 12 VIAGVAKSMGILTVGIVTTPFSFEGRR--RAVQAQEGIASLRDNVDTLIVIPNDKLLT 67 (188)
Q Consensus 12 ~ia~~a~~~~~~~isivt~Pf~~Eg~~--~~~nA~~~l~~L~~~~D~vividN~~L~~ 67 (188)
.+.++.+++..-++. |=+|++.+|.. +.+.+..=-+.|.+..+.-|++-.|+|..
T Consensus 44 ~l~~li~~~~~~~vV-VGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERltT 100 (141)
T COG0816 44 ALLKLVKEYQVDTVV-VGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERLST 100 (141)
T ss_pred HHHHHHHHhCCCEEE-EecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCccCH
Confidence 456778888654444 45788665543 33346666777888888888888888754
No 111
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=23.08 E-value=85 Score=25.57 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCceEEEeecCCCchhH--HhHHHHH-HHHHHHHhcCCEEEEEeChhhHh
Q 029771 11 PVIAGVAKSMGILTVGIVTTPFSFEGR--RRAVQAQ-EGIASLRDNVDTLIVIPNDKLLT 67 (188)
Q Consensus 11 p~ia~~a~~~~~~~isivt~Pf~~Eg~--~~~~nA~-~~l~~L~~~~D~vividN~~L~~ 67 (188)
.-+.++|++++++++++.-++...+.+ ++|.-+. .+-..+.+.+|.++.+.++..++
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~ 219 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYD 219 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCH
T ss_pred HHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhc
Confidence 346788999999999988776654432 2343222 12234567899999999998765
No 112
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=23.05 E-value=2.5e+02 Score=23.15 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCcCCchHHHHHHHHHH---cCCceEEEeecCCCchhHHhHHH---HHHHHHHHHhcCCEEEEEe
Q 029771 2 GGGTGTGGAPVIAGVAKS---MGILTVGIVTTPFSFEGRRRAVQ---AQEGIASLRDNVDTLIVIP 61 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~---~~~~~isivt~Pf~~Eg~~~~~n---A~~~l~~L~~~~D~vivid 61 (188)
-|+.|+|=+-+.+-++.+ .|+ .+-+++.|.-....+..++ ...-|.+....+|.+|+=|
T Consensus 111 ~G~~G~GKThLa~Ai~~~l~~~g~-sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 111 LGPPGVGKTHLAIAIGNELLKAGI-SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCC-eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 489999976655544444 344 4445666664433332222 2333555556788777633
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.99 E-value=63 Score=26.05 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=13.3
Q ss_pred CcCCch-HHHHHHHHHHcC
Q 029771 4 GTGTGG-APVIAGVAKSMG 21 (188)
Q Consensus 4 GTGsG~-~p~ia~~a~~~~ 21 (188)
|||||- +-+++++....+
T Consensus 80 GtGsGY~aAlla~lvg~~g 98 (209)
T PF01135_consen 80 GTGSGYQAALLAHLVGPVG 98 (209)
T ss_dssp S-TTSHHHHHHHHHHSTTE
T ss_pred cCCCcHHHHHHHHhcCccc
Confidence 899997 778899986544
No 114
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=22.44 E-value=82 Score=28.20 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=15.8
Q ss_pred CCCcCCchHHHHHHHHHHcCCce
Q 029771 2 GGGTGTGGAPVIAGVAKSMGILT 24 (188)
Q Consensus 2 GGGTGsG~~p~ia~~a~~~~~~~ 24 (188)
|||.|+..|-.+.+.+++.|..+
T Consensus 94 GG~~GsS~AfWLKer~rd~gl~V 116 (509)
T KOG2853|consen 94 GGGSGSSTAFWLKERARDEGLNV 116 (509)
T ss_pred CCccchhhHHHHHHHhhcCCceE
Confidence 45555556778889998877433
No 115
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=21.94 E-value=4.8e+02 Score=21.92 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCC---ceEEEeecCCCchhHHhHHHHHHHHHHHH
Q 029771 10 APVIAGVAKSMGI---LTVGIVTTPFSFEGRRRAVQAQEGIASLR 51 (188)
Q Consensus 10 ~p~ia~~a~~~~~---~~isivt~Pf~~Eg~~~~~nA~~~l~~L~ 51 (188)
..++.++.+++++ ..+++-..|.. ...+|..+|+.+-
T Consensus 70 ~~i~e~I~n~~PV~ls~GIG~g~TP~e-----A~~~At~~Le~~g 109 (254)
T PRK02240 70 ARIQESIRNRYPVTVSMGIGTAETPYE-----AQKLATEALQEAG 109 (254)
T ss_pred HHHHHHHHhcCCCceEEEEEecCCHHH-----HHHHHHHHHHHhc
Confidence 4567777777773 45566666663 3457777777753
No 116
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.86 E-value=1.7e+02 Score=22.32 Aligned_cols=39 Identities=33% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeChhhH
Q 029771 13 IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLL 66 (188)
Q Consensus 13 ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~~L~ 66 (188)
+++.|++.|+.+++|...|.+ .|.+.+|.++.++.+.-.
T Consensus 94 ~~~~ak~~g~~iI~IT~~~~s---------------~la~~ad~~l~~~~~~~~ 132 (179)
T cd05005 94 AAEKAKKAGAKVVLITSNPDS---------------PLAKLADVVVVIPAATKD 132 (179)
T ss_pred HHHHHHHCCCeEEEEECCCCC---------------chHHhCCEEEEeCCcccc
Confidence 468888999999999766553 356789999988876644
No 117
>PRK00023 cmk cytidylate kinase; Provisional
Probab=21.46 E-value=70 Score=25.85 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.5
Q ss_pred CCCCcCCchHHHHHHHHHHcCCc
Q 029771 1 MGGGTGTGGAPVIAGVAKSMGIL 23 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~~~ 23 (188)
+.|..|||-+.+...+++++|..
T Consensus 9 i~g~~gsGksti~~~la~~~~~~ 31 (225)
T PRK00023 9 IDGPAGSGKGTVAKILAKKLGFH 31 (225)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 36899999999988899998853
No 118
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=21.46 E-value=48 Score=28.81 Aligned_cols=14 Identities=50% Similarity=0.581 Sum_probs=10.3
Q ss_pred CcCCchHHHHHHHH
Q 029771 4 GTGTGGAPVIAGVA 17 (188)
Q Consensus 4 GTGsG~~p~ia~~a 17 (188)
|+|||+||+.+-+-
T Consensus 220 a~GtGIAP~~s~l~ 233 (360)
T cd06199 220 GPGTGIAPFRAFLQ 233 (360)
T ss_pred ecCcChHHHHHHHH
Confidence 56899999876443
No 119
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.32 E-value=1.2e+02 Score=24.29 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=17.3
Q ss_pred CCcCCchHHHHHHHHHHcCCceEE
Q 029771 3 GGTGTGGAPVIAGVAKSMGILTVG 26 (188)
Q Consensus 3 GGTGsG~~p~ia~~a~~~~~~~is 26 (188)
||+|+|++..+++...+.|..++.
T Consensus 24 G~sg~gIG~~ia~~l~~~G~~V~~ 47 (262)
T PRK07831 24 AAAGTGIGSATARRALEEGARVVI 47 (262)
T ss_pred CCCcccHHHHHHHHHHHcCCEEEE
Confidence 777889988777766667765443
No 120
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=21.17 E-value=87 Score=20.69 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHhHHHHHhhcccccceecCcccccchHHHHHhhcc
Q 029771 79 FNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN 116 (188)
Q Consensus 79 f~~~N~~i~~~i~~it~~i~~~g~in~D~~dl~~~L~~ 116 (188)
.+.+|+.|.+++..-..+-++.+.-.++..|++-.|..
T Consensus 27 l~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 27 LELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 55677777777777777778888888999999887753
No 121
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=21.09 E-value=52 Score=28.82 Aligned_cols=13 Identities=54% Similarity=0.634 Sum_probs=9.8
Q ss_pred CcCCchHHHHHHH
Q 029771 4 GTGTGGAPVIAGV 16 (188)
Q Consensus 4 GTGsG~~p~ia~~ 16 (188)
|+|||+||+++-+
T Consensus 237 a~GtGIAP~rs~l 249 (382)
T cd06207 237 GPGTGLAPFRAFL 249 (382)
T ss_pred cCCccHHHHHHHH
Confidence 5689999987533
No 122
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=92 Score=27.11 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=14.2
Q ss_pred CCCCcCCchHHHHHHHHHHcC-CceEEEeec
Q 029771 1 MGGGTGTGGAPVIAGVAKSMG-ILTVGIVTT 30 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~~-~~~isivt~ 30 (188)
+|||||+ |.+.+-+|++. .-.-+||+.
T Consensus 13 lgGGtGl---~~lL~gLk~~~~~~iTaIVtv 40 (323)
T COG0391 13 LGGGTGL---PKLLSGLKRLLPSEITAIVTV 40 (323)
T ss_pred EcCCCCH---HHHHHHHHhhcCceEEEEEEe
Confidence 5888865 33444445443 344445554
No 123
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.97 E-value=3.3e+02 Score=22.78 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEE
Q 029771 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (188)
Q Consensus 10 ~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vivi 60 (188)
++++++.+++.|..+..+.+.|...+.. ...+++..+.+|.+|+-
T Consensus 25 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I------~~~l~~a~~~~DlVItt 69 (264)
T PRK01215 25 ASWIARRLTYLGYTVRRITVVMDDIEEI------VSAFREAIDRADVVVST 69 (264)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHH------HHHHHHHhcCCCEEEEe
Confidence 7889999999998887777788866543 23445556667877764
No 124
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=20.64 E-value=1.9e+02 Score=24.29 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=31.6
Q ss_pred cCCchHHH---HHHHHHHcCCceEEEeecCCCchhHHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 029771 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (188)
Q Consensus 5 TGsG~~p~---ia~~a~~~~~~~isivt~Pf~~Eg~~~~~nA~~~l~~L~~~~D~vividN~ 63 (188)
+.||-++- +++.||+.|+.+++|...|.+ .|.+.+|.++.+...
T Consensus 97 S~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s---------------~la~~ad~~l~~~~~ 143 (321)
T PRK11543 97 SYSGGAKELDLIIPRLEDKSIALLAMTGKPTS---------------PLGLAAKAVLDISVE 143 (321)
T ss_pred eCCCCcHHHHHHHHHHHHcCCeEEEEECCCCC---------------hhHHhCCEEEEcCCc
Confidence 34665443 478888999999999766553 367789998877653
No 125
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=20.62 E-value=1e+02 Score=22.35 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHcCCceEEEeecCCCchhHHhHH------HHHHHHHHHHhcCCEEEEEeCh
Q 029771 7 TGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAV------QAQEGIASLRDNVDTLIVIPND 63 (188)
Q Consensus 7 sG~~p~ia~~a~~~~~~~isivt~Pf~~Eg~~~~~------nA~~~l~~L~~~~D~vividN~ 63 (188)
.|+.+.+.++++..+++++.-..-.-.+......+ ......+++.+.+|.++++-..
T Consensus 25 ~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 25 SGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp TTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred hhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 47789999999999988865332211111110000 0123445566889999999865
No 126
>PRK07952 DNA replication protein DnaC; Validated
Probab=20.52 E-value=4.2e+02 Score=21.83 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred CCCCcCCchHHHHHHHHHHc---CCceEEEeecCC
Q 029771 1 MGGGTGTGGAPVIAGVAKSM---GILTVGIVTTPF 32 (188)
Q Consensus 1 lGGGTGsG~~p~ia~~a~~~---~~~~isivt~Pf 32 (188)
|.|++|||=+-+...++++. |. .+.+++.+.
T Consensus 104 l~G~~GtGKThLa~aia~~l~~~g~-~v~~it~~~ 137 (244)
T PRK07952 104 FSGKPGTGKNHLAAAICNELLLRGK-SVLIITVAD 137 (244)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCC-eEEEEEHHH
Confidence 45889999766665555543 44 334445544
No 127
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=20.39 E-value=54 Score=28.97 Aligned_cols=11 Identities=55% Similarity=0.984 Sum_probs=9.0
Q ss_pred CcCCchHHHHH
Q 029771 4 GTGTGGAPVIA 14 (188)
Q Consensus 4 GTGsG~~p~ia 14 (188)
|+|||+||+.+
T Consensus 248 a~GtGIAP~rs 258 (398)
T cd06203 248 GPGTGVAPFLG 258 (398)
T ss_pred cCCcChHHHHH
Confidence 57899999875
No 128
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.32 E-value=1.1e+02 Score=24.22 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=9.6
Q ss_pred HHHHhcCCEEEEEeChhh
Q 029771 48 ASLRDNVDTLIVIPNDKL 65 (188)
Q Consensus 48 ~~L~~~~D~vividN~~L 65 (188)
..+.+.+|.++.+.++..
T Consensus 193 ~~i~~~aD~vi~l~~~~~ 210 (242)
T cd00984 193 GSIEQDADVVMFLYRDEY 210 (242)
T ss_pred cccccCCCEEEEEecccc
Confidence 344445666666655543
Done!