RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029771
(188 letters)
>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated.
Length = 384
Score = 302 bits (777), Expect = e-104
Identities = 108/173 (62%), Positives = 137/173 (79%), Gaps = 1/173 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK +GILTV +VT PFSFEG++R QA+EGI LR +VDTLIVI
Sbjct: 107 MGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVI 166
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL V + TP+ +AF ADD+LRQ V+GI+D+IT PGL+N+DFADV+ +M+ G +
Sbjct: 167 PNDKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLA 226
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVS 172
+MGIG A+G+ RAR+AA AI SPLL+ + I A G++ NITGG DLTLFEV
Sbjct: 227 MMGIGEASGEDRAREAAEKAISSPLLEDVDISGAKGVLVNITGGPDLTLFEVE 279
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 304
Score = 272 bits (698), Expect = 9e-93
Identities = 110/173 (63%), Positives = 135/173 (78%), Gaps = 1/173 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APVIA +AK MG LTV +VT PFSFEG++R QA+EG+ LR +VDTLIVI
Sbjct: 94 MGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVI 153
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL V ++ P+ EAF LADD+L Q V+GISD+IT PGL+N+DFADV+ +M N G +
Sbjct: 154 PNDKLLEVVDKNLPLLEAFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVA 213
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVS 172
LMGIG A+G+ RA +AA AI SPLL+ I A G++ NITGGSDLTL EV+
Sbjct: 214 LMGIGEASGENRAIEAAEKAISSPLLEDDSISGAKGVLVNITGGSDLTLEEVN 266
>gnl|CDD|237273 PRK13018, PRK13018, cell division protein FtsZ; Provisional.
Length = 378
Score = 232 bits (594), Expect = 3e-76
Identities = 86/171 (50%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK G L VG+VT PF FEGR R +A+EGI LR+ DT+IVI
Sbjct: 122 MGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVI 181
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
N++LL V + P+ +AF++AD+++ + V+GI++ IT P L+N+DFADV+++M G +
Sbjct: 182 DNNRLLDIV-PNLPIADAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVA 240
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEV 171
+MG+G A G+ RA +A A+ +PLLD+ A G + +ITGG DLTL E
Sbjct: 241 MMGVGEAKGQNRAMEAVRAALANPLLDVDYRGAKGALVHITGGPDLTLKEA 291
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 223 bits (571), Expect = 5e-73
Identities = 97/176 (55%), Positives = 126/176 (71%), Gaps = 5/176 (2%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK +G LTV +VT PF FEG +R +A+EG+ L+ VDTLIVI
Sbjct: 111 MGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVI 170
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL V P+ +AF +ADD+L + V+GIS++IT PGL+N+DFADVRA+M+ G +
Sbjct: 171 PNDKLLEVVPN-LPLNDAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVA 229
Query: 121 LMGIGTATGK---TRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVS 172
+MGIG A G+ RA +A A+ SPLLD I A G + +ITGG+DLTL E
Sbjct: 230 MMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKGALVHITGGADLTLLEAE 285
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 212 bits (542), Expect = 7e-69
Identities = 107/173 (61%), Positives = 127/173 (73%), Gaps = 2/173 (1%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK +G LTV +VT PFSFEG R A+EGI LR+ VDTLIVI
Sbjct: 105 MGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL + TP+ EAFN ADD+L V+GI+++IT PGLVNVDFADVR +M G +
Sbjct: 165 PNDKLLKGKDK-TPIAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFA 223
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIG-IERATGIVWNITGGSDLTLFEVS 172
LMGIG A+G+ RAR+A A+ SPLLD IE A G + NITGG DLTL EV
Sbjct: 224 LMGIGRASGEDRAREAVEKALNSPLLDDVDIEGAKGALINITGGKDLTLEEVE 276
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 167 bits (424), Expect = 1e-51
Identities = 75/173 (43%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTGGAPV+A K +G LTV +VT PFS EG R + A EG +L VD L+VI
Sbjct: 94 LGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVI 153
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KL + + AF+ AD++L + V G+ I I G +NVDFADV+ +M G +
Sbjct: 154 PNEKLRQIG-EKASLEGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVA 212
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVS 172
++G G+ RA +A A PLL IE A G + + G DL L E+
Sbjct: 213 MVGYGSEDVTNRATEAVRKAALGPLLLPCEIEGAEGALLVMAGPPDLNLKEIE 265
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 146 bits (370), Expect = 1e-44
Identities = 57/101 (56%), Positives = 70/101 (69%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APVIA +AK GILTV +VT PFSFEG R A+ G+ LR++VD+LIVI
Sbjct: 92 MGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFSFEGVVRPYNAELGLEELREHVDSLIVI 151
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPG 101
ND LL + P+ AF A+D+L Q V GI+D+I PG
Sbjct: 152 DNDALLDICGRKLPLRPAFKDANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 91.1 bits (227), Expect = 4e-24
Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNIT 161
+NVDFADV+ +M G ++MGIG A+G+ RA +AA AI SPLL+ I A G++ NIT
Sbjct: 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEDSNIMGAKGVLVNIT 60
Query: 162 GGSDLTLFEVS 172
GG DLTL EV+
Sbjct: 61 GGPDLTLKEVN 71
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 84.3 bits (209), Expect = 2e-20
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1 MGGGTGTGGAPVIAGVAKSM-GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIV 59
+GGGTG+G APVIA + K + G LTV +VT PF+ EG R A G+ L ++ D++IV
Sbjct: 128 LGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKELIEHSDSVIV 187
Query: 60 IPNDKLLTAVSQSTPV-TEAFN 80
I ND LL + + AF
Sbjct: 188 IDNDALLEICDNQLDIKSPAFK 209
>gnl|CDD|204882 pfam12327, FtsZ_C, FtsZ family, C-terminal domain. This family
includes the bacterial FtsZ family of proteins. Members
of this family are involved in polymer formation. FtsZ
is the polymer-forming protein of bacterial cell
division. It is part of a ring in the middle of the
dividing cell that is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ is a GTPase, like tubulin. FtsZ can polymerise into
tubes, sheets, and rings in vitro and is ubiquitous in
eubacteria and archaea.
Length = 95
Score = 73.0 bits (180), Expect = 2e-17
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 118 GSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEV 171
G ++MG G A+G+ RA +AA AI SPLLD+ + A G++ NITGG DLTL E
Sbjct: 1 GVAMMGTGEASGEDRAEEAAEAAISSPLLDVDLSGARGVLVNITGGPDLTLEEA 54
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 53.9 bits (130), Expect = 6e-09
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 1 MGGGTGTGGAPVIAGVAKSM--GILTVGIVTTPFSFEGRR-RAVQAQEGIASLRDNVDTL 57
+GGGTG+G PV+A K L + P EG R + + +L ++ D L
Sbjct: 98 LGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCL 157
Query: 58 IVIPNDKLLTAVSQST-PVTEAFNLADDILRQGVRGISDIITIPGLVNVDF---ADVRAI 113
+VI N+ L + F+ +++L + ++ + G +NVD ++
Sbjct: 158 VVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVP 217
Query: 114 MANAGSSLMGIG 125
++G
Sbjct: 218 FPRLHFLMVGYA 229
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 2 GGGTGTGGAPVIAGVAKSM-GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTG+GGAPV+A K + P EG R + A + +L + D +I+
Sbjct: 108 GGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILF 167
Query: 61 PNDKLLT 67
ND
Sbjct: 168 DNDAWKR 174
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase, TalC/MipB
family. This model represents a family that includes
the E. coli transaldolase homologs TalC and MipB, both
shown to be fructose-6-phosphate aldolases rather than
transaldolases as previously thought. It is related to
but distinct from the transaldolase family of E. coli
TalA and TalB. The member from Bacillus subtilis becomes
phosphorylated during early stationary phase but not
during exponential growth [Energy metabolism, Pentose
phosphate pathway].
Length = 213
Score = 40.6 bits (95), Expect = 1e-04
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 27 IVTTPFSFEGRRRAVQA--QEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84
+V P + EG + AV+ +EGI + NV TL+ LL A + +T V+ DD
Sbjct: 81 VVKIPMTSEGLK-AVKILKKEGIKT---NV-TLVFSAAQALLAAKAGATYVSPFVGRLDD 135
Query: 85 ILRQGVRGISDIITIPGLVNVD----FADVRAIMANAGSSLMGIGTATGKTRARDAALNA 140
I G++ I ++ TI D A VR ++L+G AT N
Sbjct: 136 IGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFN- 194
Query: 141 IQSPLLDIGIER 152
PL DIG+ER
Sbjct: 195 --HPLTDIGLER 204
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 33.6 bits (77), Expect = 0.055
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 75 VTEAFNLADDILRQGVRG-ISDIITIPGLVNVDFADVRAIMANAGSSLM----GI----- 124
V+ A ++ + I++Q + G ++ ++ F ++ G+ L GI
Sbjct: 599 VSIANDIGEHIIKQLIIGVDDFETSLIW-ISTTFEGQGWSLSPLGNDLYDGSAGIALFFA 657
Query: 125 --GTATGKTRARDAALNAIQS-------PLLDIGIERATGI 156
TGK ++ A+ A+Q L I I TG+
Sbjct: 658 YLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGL 698
>gnl|CDD|180618 PRK06552, PRK06552,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 213
Score = 28.4 bits (64), Expect = 1.9
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 54 VDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAI 113
+ L + + ++ V + EA ++ +++ G++ I T P V ++ +
Sbjct: 4 SEILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNPFASEV-IKELVEL 61
Query: 114 MANAGSSLMGIGTATGKTRARDAAL---NAIQSPLLDI 148
+ L+G GT AR A L I SP +
Sbjct: 62 YKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNR 99
>gnl|CDD|233032 TIGR00580, mfd, transcription-repair coupling factor (mfd). All
proteins in this family for which functions are known
are DNA-dependent ATPases that function in the process
of transcription-coupled DNA repair in which the repair
of the transcribed strand of actively transcribed genes
is repaired at a higher rate than the repair of
non-transcribed regions of the genome and than the
non-transcribed strand of the same gene. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). This family is
closely related to the RecG and UvrB families [DNA
metabolism, DNA replication, recombination, and repair].
Length = 926
Score = 28.5 bits (64), Expect = 2.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 16/66 (24%)
Query: 35 EGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGIS 94
E +R V+ +E + LR +VD L L+A TP+ +++ G+R +S
Sbjct: 581 EEQRFGVKQKEKLKELRTSVDVLT-------LSA----TPIPRTLHMS----MSGIRDLS 625
Query: 95 DIITIP 100
II P
Sbjct: 626 -IIATP 630
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional.
Length = 214
Score = 27.4 bits (62), Expect = 3.6
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 43 AQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGL 102
++EGI + NV TLI N LL A + +T V+ DDI G+ I DI I
Sbjct: 98 SKEGI---KTNV-TLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREI--Y 151
Query: 103 VNVDF------ADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQS----PLLDIGIER 152
N F A VR M ++L G AT I+ PL D G+E+
Sbjct: 152 DNYGFDTEIIAASVRHPMHVLEAALAGADIAT-------IPYKVIKQLFKHPLTDKGLEK 204
>gnl|CDD|240314 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein;
Provisional.
Length = 436
Score = 28.0 bits (62), Expect = 3.6
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 67 TAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGT 126
T V Q P++E A + ++G + I IP + +A S + G
Sbjct: 297 TKVEQEKPLSEVIVAAKEAGKKGAK-----IIIPAAAPATATESTKGEDSAISEHVDRGI 351
Query: 127 ATGKT 131
AT +T
Sbjct: 352 ATNET 356
>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function
prediction only].
Length = 323
Score = 27.3 bits (61), Expect = 5.7
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 41 VQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITI 99
+ A E + RD D L++ T ++ PV + F L D L GVR + ++T+
Sbjct: 72 LPALERLLRRRDRPDRLVIET-----TGLADPAPVIQTF-LTDPELADGVR-LDGVVTV 123
>gnl|CDD|234727 PRK00325, algL, poly(beta-D-mannuronate) lyase; Provisional.
Length = 359
Score = 27.0 bits (60), Expect = 6.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 117 AGSSLMGIGTATGKTRARDAALNAIQSPLLDIG 149
A ++M G AT + D A+ + + I
Sbjct: 200 AAWAVMATGVATDRRDLFDWAVKEYRVGINQID 232
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB;
Provisional.
Length = 225
Score = 26.7 bits (60), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 27 IVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
I+ P SFE + A++ E +A ++NV LIV+
Sbjct: 83 IIFEPSSFEEQSEAIRKAEKLA--KENVG-LIVL 113
>gnl|CDD|232992 TIGR00474, selA, seryl-tRNA(sec) selenium transferase. In
bacteria, the incorporation of selenocysteine as the
21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes SelA.
This model excludes homologs that appear to differ in
function from Frankia alni, Helicobacter pylori,
Methanococcus jannaschii and other archaea, and so on
[Protein synthesis, tRNA aminoacylation].
Length = 454
Score = 26.8 bits (60), Expect = 7.6
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 113 IMANAGSSLMGIGTATGKTRARDAALNAI 141
+M +G+ L+ +GT T +T +D +AI
Sbjct: 182 VMEQSGAKLVEVGT-TNRTHLKDYE-DAI 208
>gnl|CDD|224338 COG1420, HrcA, Transcriptional regulator of heat shock gene
[Transcription].
Length = 346
Score = 26.4 bits (59), Expect = 9.0
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 83 DDILRQGVRGISDIITIPGLV------NVDFADVRAIMANAGSSLMGIGTATGKTRARDA 136
+D+L++ + +S++ + G+V + + + + +L + T +G+ R
Sbjct: 106 EDLLQKAAQLLSELTGLTGVVLTPKFSDESLKHIELVPLDPHRALAVLVTDSGEVENRII 165
Query: 137 ALNA 140
L
Sbjct: 166 ELPE 169
>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting
cousin of TRX (PICOT)-like subfamily; composed of PICOT
and GRX-PICOT-like proteins. The non-PICOT members of
this family contain only the GRX-like domain, whereas
PICOT contains an N-terminal TRX-like domain followed by
one to three GRX-like domains. It is interesting to note
that PICOT from plants contain three repeats of the
GRX-like domain, metazoan proteins (except for insect)
have two repeats, while fungal sequences contain only
one copy of the domain. PICOT is a protein that
interacts with protein kinase C (PKC) theta, a calcium
independent PKC isoform selectively expressed in
skeletal muscle and T lymphocytes. PICOT inhibits the
activation of c-Jun N-terminal kinase and the
transcription factors, AP-1 and NF-kB, induced by PKC
theta or T-cell activating stimuli. Both GRX and TRX
domains of PICOT are required for its activity.
Characterized non-PICOT members of this family include
CXIP1, a CAX-interacting protein in Arabidopsis
thaliana, and PfGLP-1, a GRX-like protein from
Plasmodium falciparum.
Length = 90
Score = 25.1 bits (56), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF 107
F+ L D+ +RQG++ S+ T P L VN +
Sbjct: 41 GTFDILEDEEVRQGLKEYSNWPTFPQLYVNGEL 73
>gnl|CDD|234661 PRK00140, rplK, 50S ribosomal protein L11; Validated.
Length = 141
Score = 25.9 bits (58), Expect = 9.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 13 IAGVAKSMGILTVG 26
IAG A+SMGI+ G
Sbjct: 128 IAGTARSMGIVVEG 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,858,837
Number of extensions: 954730
Number of successful extensions: 1176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 50
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)