RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029771
(188 letters)
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 316 bits (812), Expect = e-109
Identities = 100/172 (58%), Positives = 135/172 (78%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTGGAPV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVI
Sbjct: 105 EGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PND+LL + + +AF AD++L GV+GI+D+IT PGL+NVDFADV+ IM+ AG++
Sbjct: 165 PNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVS 172
LMGIG+A G+ R+ AA AI SPLL+ +E A G++ +I GGSDL LFE++
Sbjct: 225 LMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFEIN 276
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 314 bits (807), Expect = e-108
Identities = 106/172 (61%), Positives = 141/172 (81%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APVIA +AK +G LTVG+VT PF+FEGR+R +QA GI+++++ VDTLIVI
Sbjct: 105 MGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PND++L V ++TP+ EAF AD++LRQGV+GISD+I PGL+N+DFADV+ IM+N GS+
Sbjct: 165 PNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVS 172
LMGIG ATG+ RA +AA AI SPLL+ I+ A G++ NITGG++L+L+EV
Sbjct: 225 LMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQ 276
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 315 bits (808), Expect = e-108
Identities = 105/172 (61%), Positives = 133/172 (77%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVI
Sbjct: 111 MGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVI 170
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PND+LL V +STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+
Sbjct: 171 PNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSA 230
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVS 172
LMGIG ++G+ RA +AA AI SPLL+ I A G++ NITGG L+LFE
Sbjct: 231 LMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQ 282
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 304 bits (782), Expect = e-105
Identities = 81/172 (47%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTG APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VI
Sbjct: 131 LGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVI 190
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KL + + P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +
Sbjct: 191 PNEKLFE-IVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLA 249
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVS 172
++GIG + + RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E
Sbjct: 250 MIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAR 301
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 304 bits (780), Expect = e-105
Identities = 84/174 (48%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTG +PVIA +AK MGILTV IVTTPF FEG R +A EG+ LR +VDTLI I
Sbjct: 115 FGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKI 174
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVD--FADVRAIMANAG 118
N+KL+ + + + +AF AD+ L QGV+GIS++IT G + + FA + ++M +AG
Sbjct: 175 SNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAG 234
Query: 119 SSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVS 172
++++GIG G+ RAR+AA A++S L++ +E A+ IV+NIT S++ + EV
Sbjct: 235 AAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVH 288
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 300 bits (771), Expect = e-103
Identities = 73/173 (42%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTG APVIA AK MGILTV + T PF FEG R+ +A +G+ L+++ D IVI
Sbjct: 101 LGGGTGTGAAPVIAKTAKEMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVI 160
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
NDK+ +++ + +AF D +L + VRGI+ I+ P ++NVDFADVR + G S
Sbjct: 161 HNDKIKELSNRTLTIKDAFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLS 220
Query: 121 LMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVS 172
++G+G G +A A A+ SPLL IE A ++ I D+ V
Sbjct: 221 IIGMGEGRGDEKADIAVEKAVTSPLLEGNTIEGARRLLVTIWTSEDIPYDIVD 273
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 292 bits (751), Expect = e-101
Identities = 98/173 (56%), Positives = 126/173 (72%), Gaps = 1/173 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI I
Sbjct: 105 MGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KLLT + + + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G +
Sbjct: 165 PNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVS 172
+MG G A+G RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E S
Sbjct: 225 MMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYS 277
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 294 bits (754), Expect = e-100
Identities = 98/173 (56%), Positives = 126/173 (72%), Gaps = 1/173 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI I
Sbjct: 105 MGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KLLT + + + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G +
Sbjct: 165 PNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVS 172
+MG G A+G RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E S
Sbjct: 225 MMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYS 277
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 167 bits (424), Expect = 5e-51
Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 20/193 (10%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLR---DNVDTL 57
+GGGTGTG + ++T P E + A I S+ + ++
Sbjct: 121 LGGGTGTGALLKAIEMLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSI 180
Query: 58 IVIPNDKLLTAVSQSTP---VTEAFNLADDILRQGVRGISDIITIP---GLVNVDFADVR 111
++I N KL + P E + ++ + + I+ + + + D ++
Sbjct: 181 VLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFA 240
Query: 112 AIMANAGSSLMGIGTATGKT-------RARDAALNAIQSPLLDIG----IERATGIVWNI 160
++ G + NA++ +L +E A +I
Sbjct: 241 QVINTPGVLSLAKLELKSNQLDTENPLGYLTQLGNALEKGVLYDTEREELESAKKSALSI 300
Query: 161 TGGSDLTLFEVSL 173
+
Sbjct: 301 VTSPLRAGRLYNF 313
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 127 bits (320), Expect = 6e-36
Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 21/174 (12%)
Query: 1 MGGGTGTGGAPVIAGVAKSM--GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVD--- 55
M GG G+G P I G+AK M + P + E + A + + +
Sbjct: 98 MAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGK 157
Query: 56 --TLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAI 113
++ ++ N+K E + + ++ VD ++ +
Sbjct: 158 DISIYLLDNNKR-----------EKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKL 206
Query: 114 MANAGSSLMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDL 166
+ S+++ K + A +++ + + + + T D+
Sbjct: 207 LTMKKSNVI--LEFDDKEDIQVALAKSLKESIFAEYTTNTCEFMGISTTRVVDV 258
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 52.2 bits (124), Expect = 1e-08
Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 25/171 (14%)
Query: 1 MGGGTGTGGAPVIAGVAKSMG--ILTVGIVTTPFSFEGRRRAVQA-------------QE 45
GGG GTG ++ + + +++ P +
Sbjct: 157 AGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRL 216
Query: 46 GIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITI------ 99
S + +IV N ++ + + N + + +
Sbjct: 217 FGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPE 276
Query: 100 ---PGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD 147
V D +D+ +++ G + IG A + N+I+ L +
Sbjct: 277 NYGSDNVTYDPSDLIKLLSIPG-RFLTIGKARIAKFDLHSLENSIKRSLDE 326
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 37.2 bits (85), Expect = 0.002
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIV-TTPFSFEGRRRAVQAQEGIASLRDNVDTLIV 59
+GGG+G+ P+I G V V S + + + + ++ N IV
Sbjct: 90 LGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIV 149
Query: 60 I---PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISD 95
+ PN + + S + + E ++ Q +
Sbjct: 150 VNYVPNTQGRSYESINDEIAEKIRKVVLLVNQNHGRLDV 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.012
Identities = 40/246 (16%), Positives = 75/246 (30%), Gaps = 83/246 (33%)
Query: 3 GGTGTGG----APVIAG----------VAKSMGILT-VGIV---TTP---FSFEGRRRAV 41
G TG A IA V K++ +L +G+ P ++
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 42 QAQEGIAS----LRD-NVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDI 96
+ EG+ S + + + + + + P + ++ L G + + +
Sbjct: 329 ENNEGVPSPMLSISNLTQEQV-----QDYVNKTNSHLPAGKQVEIS---LVNGAKNL--V 378
Query: 97 ITIP-----GLVNVDFADVRAIMANAG---------------------------SSLMGI 124
++ P GL +R A +G S L+
Sbjct: 379 VSGPPQSLYGLNL----TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV- 433
Query: 125 GTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVSL--FLFGCLFVC 182
A+ D N + DI I V++ GSDL + S+ + C+
Sbjct: 434 -PASDLINK-DLVKNNVSFNAKDIQIP-----VYDTFDGSDLRVLSGSISERIVDCII-R 485
Query: 183 LLLSWT 188
L + W
Sbjct: 486 LPVKWE 491
Score = 28.5 bits (63), Expect = 1.7
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 41/140 (29%)
Query: 50 LRD-------NVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILR-----QGVRGISDII 97
LRD V LI + L + + + F +IL ++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 98 TIP------GLV------------NVDFADVRAIMANAGSSLMGIG------TATGKTRA 133
+IP G++ ++R+ + G++ G A +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDSWE 290
Query: 134 --RDAALNAIQSPLLDIGIE 151
+ AI L IG+
Sbjct: 291 SFFVSVRKAITV-LFFIGVR 309
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 26.8 bits (60), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
E F+ L D+ +RQG++ S+ T P L V + D+ + G
Sbjct: 50 ETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENG 96
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 27.0 bits (59), Expect = 3.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 13 IAGVAKSMGILTVG 26
IAG A+SMG+ VG
Sbjct: 126 IAGSARSMGVEVVG 139
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 26.4 bits (59), Expect = 3.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL 102
+F+ +D+ +RQG++ S T P L
Sbjct: 49 SSFDIFSDEEVRQGLKAYSSWPTYPQL 75
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 26.5 bits (59), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF 107
E F+ L D+ +RQG++ S+ T P L V D
Sbjct: 48 ETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDL 80
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 27.5 bits (61), Expect = 3.6
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 14 AGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEG 46
G S +L + P SF + + V G
Sbjct: 84 VGAVASSAVLVIKERKLPPSFARKLKDVHETLG 116
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 224
Score = 26.7 bits (58), Expect = 4.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 13 IAGVAKSMGILTVG 26
IAG A +MGI
Sbjct: 199 IAGTAANMGIDIDP 212
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 26.2 bits (58), Expect = 4.4
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
A+N L D LR+G++ S+ TIP L VN +F DV MA +G
Sbjct: 52 AAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSG 98
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 26.1 bits (58), Expect = 4.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
E N L +++LRQG++ S+ T P L + +F D+ G
Sbjct: 51 EDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTG 97
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame
87, Fe/S cluster, oxidoreductase, thioredoxin family,
GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens}
PDB: 2wul_A*
Length = 118
Score = 25.8 bits (57), Expect = 6.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
A+N L D LRQG++ S+ TIP + +N +F D+ M G
Sbjct: 54 AAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNG 100
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 26.5 bits (59), Expect = 6.4
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 6 GTGGAPVIA--GVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDT 56
G GGA + A A++ + +++ + R V A+ G A++ + D+
Sbjct: 12 GAGGAGLRAAIAAAQANPNAKIALISK--VYPMRSHTVAAEGGSAAVAQDHDS 62
>3qfk_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, phosphoesterase,
hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
subsp}
Length = 527
Score = 26.5 bits (59), Expect = 6.7
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 20/93 (21%)
Query: 43 AQEGIASLRDNVDTLIV-----IPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDII 97
Q+ + ++ + D ++V D T V N +L + I DI
Sbjct: 188 LQQYLPEMKRHADIIVVCYHGGFEKD---LESGTPTEVLTGENEGYAMLEAFSKDI-DIF 243
Query: 98 -------TIPGLVNVDFADVRAIMANAGSSLMG 123
I I + +G
Sbjct: 244 ITGHQHRQIAERFK----QTAVIQPGTRGTTVG 272
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E
RNA-protein interaction, minor groove binding,
antibiotic binding; 2.80A {Geobacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Length = 67
Score = 24.7 bits (54), Expect = 7.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 13 IAGVAKSMGI 22
I G A+SMGI
Sbjct: 58 IEGTARSMGI 67
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 26.2 bits (57), Expect = 7.4
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 93 ISDIITIPGLVNVDFADVRAIMANA---GSSLMGIGTATGKTRARDAALNAIQSPLLDIG 149
I + G + F D +AI A G G G T R A +L+ G
Sbjct: 3 IKQALFTAGYSSFYFDDQQAIKNGAGHDGFIYTGDPVTPGFTSVRQAGECVSVQLILENG 62
Query: 150 IE---RATGIVWNITGGSD 165
+ ++ GG D
Sbjct: 63 AVAVGDCAAVQYSGAGGRD 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,931,423
Number of extensions: 184878
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 41
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)