RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029771
(188 letters)
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 133 bits (335), Expect = 4e-40
Identities = 63/104 (60%), Positives = 77/104 (74%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI I
Sbjct: 95 MGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITI 154
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVN 104
PN+KLLT + + + AF ADD+L VRGISDII PG++N
Sbjct: 155 PNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMIN 198
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 129 bits (325), Expect = 1e-38
Identities = 62/104 (59%), Positives = 83/104 (79%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTGGAPV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVI
Sbjct: 95 EGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVI 154
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVN 104
PND+LL + + +AF AD++L GV+GI+D+IT PGL+N
Sbjct: 155 PNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLIN 198
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 121 bits (306), Expect = 1e-35
Identities = 48/102 (47%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTG APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VI
Sbjct: 109 LGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVI 168
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGL 102
PN+KL + + P+ AF +AD++L V+G+ ++IT GL
Sbjct: 169 PNEKLFE-IVPNMPLKLAFKVADEVLINAVKGLVELITKDGL 209
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 113 bits (283), Expect = 2e-32
Identities = 57/101 (56%), Positives = 72/101 (71%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTG +PVIA +AK MGILTV IVTTPF FEG R +A EG+ LR +VDTLI I
Sbjct: 94 FGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKI 153
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPG 101
N+KL+ + + + +AF AD+ L QGV+GIS++IT G
Sbjct: 154 SNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRG 194
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 121
Score = 78.4 bits (193), Expect = 8e-20
Identities = 27/70 (38%), Positives = 48/70 (68%)
Query: 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
+ FA + ++M +AG++++GIG G+ RAR+AA A++S L++ +E A+ IV+NIT
Sbjct: 4 LTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITA 63
Query: 163 GSDLTLFEVS 172
S++ + EV
Sbjct: 64 PSNIRMEEVH 73
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 107
Score = 74.6 bits (183), Expect = 1e-18
Identities = 38/68 (55%), Positives = 52/68 (76%)
Query: 105 VDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGS 164
VDFADV+ IM+ AG++LMGIG+A G+ R+ AA AI SPLL+ +E A G++ +I GGS
Sbjct: 1 VDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGS 60
Query: 165 DLTLFEVS 172
DL LFE++
Sbjct: 61 DLGLFEIN 68
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 123
Score = 71.9 bits (176), Expect = 3e-17
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
+NVDFADV+A+M N G +++GIG + + RA++A A+ SPLLD+ I+ ATG + ++ G
Sbjct: 1 INVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMG 60
Query: 163 GSDLTLFEVS 172
DLTL E
Sbjct: 61 PEDLTLEEAR 70
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 70.7 bits (173), Expect = 6e-17
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 105 VDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGG 163
VDFADV+ +M+ G ++MG G A+G RAR+A AI++PLL D+ ++ A GI+ NIT G
Sbjct: 1 VDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAG 60
Query: 164 SDLTLFEVS 172
DL+L E S
Sbjct: 61 PDLSLGEYS 69
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S
ribosomal protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 24.6 bits (54), Expect = 2.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 13 IAGVAKSMGILTVG 26
+AG A+SMG+ G
Sbjct: 56 VAGTARSMGVTIEG 69
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 25.3 bits (55), Expect = 3.3
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 19 SMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEA 78
S+GI T G V T + + + DN +++ + + + +
Sbjct: 16 SLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGK- 74
Query: 79 FNLADDILRQGVRGISDI-----ITIPGLVNVDFAD 109
F L + RG+ I I G++NV D
Sbjct: 75 FELTG--IPPAPRGVPQIEVTFDIDANGILNVSAVD 108
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 23.8 bits (52), Expect = 4.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 13 IAGVAKSMGILTV 25
I G AKSMGI V
Sbjct: 58 IEGTAKSMGIEVV 70
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 68
Score = 23.8 bits (52), Expect = 4.9
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 13 IAGVAKSMGI 22
I G A+SMG+
Sbjct: 56 IEGTARSMGL 65
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 23.8 bits (52), Expect = 5.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 13 IAGVAKSMGI 22
IAG A+SMG+
Sbjct: 57 IAGSARSMGV 66
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 23.8 bits (52), Expect = 6.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 13 IAGVAKSMGI 22
I G A+SMGI
Sbjct: 62 IEGTARSMGI 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.400
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 665,575
Number of extensions: 29025
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 18
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)