BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029772
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 99 EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIR 158
E +K FL FKK KY + + LAK QSP FMV AC+DSRVCPS++L QPGE F++R
Sbjct: 15 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 159 NVANLVPPLENGP-SETNAALEFAVNTLEVS 188
NVANLVPP + + T AA+E+AV L+VS
Sbjct: 75 NVANLVPPYDQAKYAGTGAAIEYAVLHLKVS 105
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Query: 120 FQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETN--AA 177
F+ LA+AQ P+F+ I C+DSRV + GL+PGE F+ RNVANLV ++ N +
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVI-----HTDLNCLSV 80
Query: 178 LEFAVNTLEV 187
+++AV+ LEV
Sbjct: 81 VQYAVDVLEV 90
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Query: 120 FQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETN--AA 177
F+ LA+AQ P+F+ I C+DSRV + GL+PGE F+ RNVANLV ++ N +
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVI-----HTDLNCLSV 80
Query: 178 LEFAVNTLEV 187
+++AV+ LEV
Sbjct: 81 VQYAVDVLEV 90
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Query: 120 FQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETN--AA 177
F+ LA+AQ P+F+ I C+DSRV + GL+PGE F+ RNVANLV ++ N +
Sbjct: 29 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVI-----HTDLNCLSV 83
Query: 178 LEFAVNTLEV 187
+++AV+ LEV
Sbjct: 84 VQYAVDVLEV 93
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 119 HFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAAL 178
+F +A +Q+P+++ I CADSRV P+ + + PGE F+ RNV NLV N + L
Sbjct: 30 YFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLV---SNKDLNCMSCL 86
Query: 179 EFAVNTLEV 187
E+ V+ L++
Sbjct: 87 EYTVDHLKI 95
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ IAC+DSRV + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
F+ RNVAN V + N S +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTDFNCLS----VVQYAVDVLKI 90
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Query: 98 FEEMKQRFLSFKKNKYF------EELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQP 151
F+E+++ + N+Y+ EE E K Q+P F+ I CADSRV I+ +P
Sbjct: 27 FKEIRE---VLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKP 83
Query: 152 GETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS 188
G+ F+ RNVAN P ++ + A L +A+ + V+
Sbjct: 84 GDVFVQRNVANQFKPEDD---SSQALLNYAIMNVGVT 117
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Query: 98 FEEMKQRFLSFKKNKYF------EELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQP 151
F+E+++ + N+Y+ EE E K Q+P F+ I CADSRV I+ +P
Sbjct: 31 FKEIRE---VLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKP 87
Query: 152 GETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS 188
G+ F+ RNVAN P ++ + A L +A+ + V+
Sbjct: 88 GDVFVQRNVANQFKPEDD---SSQALLNYAIMNVGVT 121
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSRV + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLENGPSETNAALEFAVNTLEV 187
F+ RNVAN V + + +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTD---FNCLSVVQYAVDVLKI 90
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSRV + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
F+ RNVAN V + N S +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTDFNCLS----VVQYAVDVLKI 90
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSRV + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
F+ RNVAN V + N S +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTDFNCLS----VVQYAVDVLKI 90
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSRV + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLFIGCSDSRVPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
F+ RNVAN V + N S +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTDFNCLS----VVQYAVDVLKI 90
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 107 SFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVAN 162
++++ ++ E F LA QSP+++ I CADSRV + +L L GE F+ RN+AN
Sbjct: 45 AWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIAN 100
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 99 EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIR 158
E +Q+ L K++ F F NLA Q+P+ + I CADSRV + I+ L GE F+ R
Sbjct: 298 ENWRQKML--KQDPQF-----FSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHR 350
Query: 159 NVAN 162
N+AN
Sbjct: 351 NIAN 354
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSR + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRAPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
F+ RNVAN V + N S +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTDFNCLS----VVQYAVDVLKI 90
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
+++KQ F S+ + E +F+ LA Q+P ++ I C++SRV + L+PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSNSRVPAEKLTNLEPGEL 60
Query: 155 FMIRNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
F+ RNVAN V + N S +++AV+ L++
Sbjct: 61 FVHRNVANQVIHTDFNCLS----VVQYAVDVLKI 90
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMI 157
+E +RF++ + + ++H LA Q P ++ CADSRV I G+ F++
Sbjct: 21 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 80
Query: 158 RNVANLVPPLENGPSETNAALEFAVNTLEV 187
R +++ S ++E+AV L V
Sbjct: 81 RTAGHVI------DSAVLGSIEYAVTVLNV 104
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMI 157
+E +RF++ + + ++H LA Q P ++ CADSRV I G+ F++
Sbjct: 19 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 78
Query: 158 RNVANLVPPLENGPSETNAALEFAVNTLEV 187
R +++ S ++E+AV L V
Sbjct: 79 RTAGHVI------DSAVLGSIEYAVTVLNV 102
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 124 AKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVN 183
AK QSP + I C+DSR LG+ PGE F +NVAN+ + A LEFA+
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANIC---HSEDLTLKATLEFAII 95
Query: 184 TLEVS 188
L+V+
Sbjct: 96 CLKVN 100
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 128 SPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLV 164
S + V+AC D+R+ +LGLQ GE +IRN ++
Sbjct: 36 SRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI 72
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 108 FKKNKYFEELEHFQNLAK-AQSPKFMVIACADSRVCP--SYILGLQPGETFMIRNVANLV 164
++N+ F F++L+ SPK +I C DSR+ LG+ G+ +I+N N+V
Sbjct: 7 LRENQDF----RFRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIV 62
Query: 165 PPLENGPSETNAALEFAVNTLEV 187
++G + A +A+ E+
Sbjct: 63 ---DDGVIRSAAVAIYALGDNEI 82
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 130 KFMVIACADSRVCPSYILGLQPGETFMIRNVANLV 164
+ V+ C D RV LG+QP + + RN +V
Sbjct: 29 RLWVLTCXDERVHIEQSLGIQPDDAHIYRNAGGIV 63
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 130 KFMVIACADSRVCPSYILGLQPGETFMIRNVANLV 164
+ V+ C D RV LG+QP + + RN +V
Sbjct: 29 RLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIV 63
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 128 SPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLV 164
S ++AC D+R+ +LG++ GE +IRN +V
Sbjct: 36 SKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVV 72
>pdb|3LAS|A Chain A, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
pdb|3LAS|B Chain B, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
Length = 166
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 108 FKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLV 164
K N+ + +L +L + ++ C DSR+ + LGL G+ ++RN V
Sbjct: 10 IKANQAYVDLHGTAHLPLKPKTRVAIVTCMDSRLHVAPALGLALGDAHILRNAGGRV 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,000,703
Number of Sequences: 62578
Number of extensions: 122550
Number of successful extensions: 278
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 25
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)