Query 029774
Match_columns 188
No_of_seqs 144 out of 1032
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:27:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0041 PurE Phosphoribosylcar 100.0 2.5E-31 5.4E-36 218.5 9.1 73 116-188 3-75 (162)
2 TIGR01162 purE phosphoribosyla 99.9 1.4E-27 3E-32 194.6 7.3 71 118-188 1-71 (156)
3 PF00731 AIRC: AIR carboxylase 99.9 5E-27 1.1E-31 189.6 5.2 73 116-188 1-73 (150)
4 PLN02948 phosphoribosylaminoim 99.9 4.1E-26 8.8E-31 212.2 8.8 110 69-188 374-483 (577)
5 COG1691 NCAIR mutase (PurE)-re 99.3 3.2E-12 7E-17 111.7 5.1 71 114-188 116-190 (254)
6 KOG2835 Phosphoribosylamidoimi 99.0 4.3E-11 9.4E-16 109.3 -0.1 103 70-188 179-281 (373)
7 cd08170 GlyDH Glycerol dehydro 95.8 0.042 9.2E-07 48.0 7.6 67 116-182 23-89 (351)
8 cd08550 GlyDH-like Glycerol_de 95.7 0.045 9.7E-07 48.1 7.5 67 116-182 23-89 (349)
9 cd08185 Fe-ADH1 Iron-containin 95.3 0.081 1.8E-06 46.9 7.6 67 116-182 26-95 (380)
10 cd08183 Fe-ADH2 Iron-containin 95.0 0.085 1.8E-06 46.8 7.1 65 116-182 23-87 (374)
11 cd08551 Fe-ADH iron-containing 94.7 0.13 2.9E-06 45.1 7.3 67 116-182 24-92 (370)
12 PRK09423 gldA glycerol dehydro 94.4 0.2 4.4E-06 44.4 7.9 67 116-182 30-96 (366)
13 cd08171 GlyDH-like2 Glycerol d 94.4 0.16 3.5E-06 44.7 7.1 67 116-182 23-90 (345)
14 cd08195 DHQS Dehydroquinate sy 94.1 0.34 7.3E-06 42.6 8.6 67 116-182 25-97 (345)
15 cd08175 G1PDH Glycerol-1-phosp 94.0 0.24 5.3E-06 43.3 7.5 65 117-182 25-92 (348)
16 cd08182 HEPD Hydroxyethylphosp 94.0 0.23 5E-06 43.8 7.3 65 116-182 24-89 (367)
17 TIGR01357 aroB 3-dehydroquinat 93.9 0.39 8.5E-06 42.0 8.5 67 116-182 21-93 (344)
18 cd08194 Fe-ADH6 Iron-containin 93.9 0.21 4.5E-06 44.4 6.9 67 116-182 24-92 (375)
19 cd08186 Fe-ADH8 Iron-containin 93.9 0.21 4.5E-06 44.7 6.9 67 116-182 27-96 (383)
20 PRK00843 egsA NAD(P)-dependent 93.8 0.36 7.8E-06 42.7 8.1 64 116-181 35-98 (350)
21 cd08176 LPO Lactadehyde:propan 93.7 0.2 4.4E-06 44.5 6.5 67 116-182 29-97 (377)
22 cd08187 BDH Butanol dehydrogen 93.6 0.2 4.4E-06 44.6 6.4 67 116-182 29-98 (382)
23 PF00465 Fe-ADH: Iron-containi 93.6 0.2 4.3E-06 44.0 6.2 65 117-182 23-90 (366)
24 cd08178 AAD_C C-terminal alcoh 93.4 0.25 5.3E-06 44.4 6.6 67 116-182 22-90 (398)
25 cd08181 PPD-like 1,3-propanedi 93.2 0.28 6.2E-06 43.4 6.5 67 116-182 26-95 (357)
26 TIGR02638 lactal_redase lactal 93.1 0.3 6.6E-06 43.6 6.6 67 116-182 30-98 (379)
27 cd08192 Fe-ADH7 Iron-containin 93.0 0.36 7.7E-06 42.7 6.9 66 117-182 26-93 (370)
28 PRK00002 aroB 3-dehydroquinate 93.0 0.66 1.4E-05 41.1 8.6 67 116-182 32-104 (358)
29 cd08193 HVD 5-hydroxyvalerate 92.7 0.27 5.8E-06 43.7 5.7 67 116-182 27-95 (376)
30 cd08188 Fe-ADH4 Iron-containin 92.7 0.43 9.4E-06 42.5 7.0 67 116-182 29-97 (377)
31 cd08173 Gro1PDH Sn-glycerol-1- 92.7 0.72 1.6E-05 40.4 8.2 65 116-182 26-90 (339)
32 cd08179 NADPH_BDH NADPH-depend 92.6 0.43 9.4E-06 42.4 7.0 67 116-182 24-93 (375)
33 PRK10624 L-1,2-propanediol oxi 92.6 0.37 8E-06 43.1 6.5 67 116-182 31-99 (382)
34 cd08197 DOIS 2-deoxy-scyllo-in 92.6 0.78 1.7E-05 41.3 8.6 66 116-181 24-95 (355)
35 cd08189 Fe-ADH5 Iron-containin 92.5 0.48 1E-05 42.1 7.0 67 116-182 27-95 (374)
36 PRK15454 ethanol dehydrogenase 92.2 0.33 7.2E-06 44.0 5.8 66 117-182 51-118 (395)
37 cd07766 DHQ_Fe-ADH Dehydroquin 92.0 0.85 1.9E-05 39.3 7.8 65 117-182 25-90 (332)
38 cd08190 HOT Hydroxyacid-oxoaci 91.8 0.76 1.6E-05 41.8 7.6 67 116-182 24-92 (414)
39 PRK09860 putative alcohol dehy 91.4 0.58 1.2E-05 42.1 6.4 67 116-182 32-100 (383)
40 PF04392 ABC_sub_bind: ABC tra 91.1 0.61 1.3E-05 39.5 5.9 66 117-182 1-71 (294)
41 cd08199 EEVS 2-epi-5-epi-valio 90.9 1.6 3.4E-05 39.3 8.5 66 116-181 27-99 (354)
42 cd08549 G1PDH_related Glycerol 90.5 1.3 2.7E-05 39.0 7.5 66 116-182 25-92 (332)
43 PRK15138 aldehyde reductase; P 90.4 0.66 1.4E-05 41.9 5.8 65 116-182 30-97 (387)
44 PRK01372 ddl D-alanine--D-alan 89.8 0.39 8.4E-06 40.3 3.6 57 114-178 3-64 (304)
45 cd08191 HHD 6-hydroxyhexanoate 89.4 1.7 3.7E-05 39.0 7.5 65 116-182 23-91 (386)
46 cd03786 GT1_UDP-GlcNAc_2-Epime 89.2 1.7 3.8E-05 36.3 7.0 63 117-179 1-64 (363)
47 PRK13055 putative lipid kinase 88.9 2.4 5.3E-05 37.2 8.0 61 117-179 4-68 (334)
48 PF10096 DUF2334: Uncharacteri 88.8 1.7 3.6E-05 37.1 6.8 52 125-176 12-74 (243)
49 PRK11914 diacylglycerol kinase 88.6 4 8.8E-05 34.9 9.0 60 117-179 10-73 (306)
50 cd03028 GRX_PICOT_like Glutare 88.5 2.8 6.2E-05 30.1 6.9 58 117-176 9-70 (90)
51 PLN02834 3-dehydroquinate synt 88.1 2.9 6.3E-05 38.9 8.4 66 116-181 101-174 (433)
52 PRK00861 putative lipid kinase 88.0 3.1 6.7E-05 35.5 7.9 60 116-179 3-66 (300)
53 cd08180 PDD 1,3-propanediol de 87.9 1.9 4.1E-05 37.7 6.7 66 116-182 23-90 (332)
54 TIGR03702 lip_kinase_YegS lipi 87.7 2.8 6.1E-05 35.8 7.5 59 118-179 3-61 (293)
55 cd08177 MAR Maleylacetate redu 87.6 1.5 3.2E-05 38.5 5.8 65 117-182 25-89 (337)
56 PRK13337 putative lipid kinase 87.3 3.1 6.7E-05 35.8 7.6 60 117-179 3-66 (304)
57 PRK13054 lipid kinase; Reviewe 87.1 3.3 7.1E-05 35.6 7.5 62 115-179 3-65 (300)
58 TIGR00365 monothiol glutaredox 86.1 5.2 0.00011 29.5 7.2 59 116-176 12-74 (97)
59 PF13407 Peripla_BP_4: Peripla 84.9 10 0.00023 30.0 8.9 64 118-182 1-67 (257)
60 cd01391 Periplasmic_Binding_Pr 84.5 7.1 0.00015 29.1 7.4 62 118-179 2-67 (269)
61 PRK10653 D-ribose transporter 84.4 12 0.00027 30.7 9.4 63 115-179 26-91 (295)
62 TIGR00147 lipid kinase, YegS/R 84.1 6.8 0.00015 33.1 7.9 60 117-179 3-66 (293)
63 COG1454 EutG Alcohol dehydroge 84.0 5.4 0.00012 37.1 7.9 67 116-182 30-98 (377)
64 cd00860 ThrRS_anticodon ThrRS 83.7 8.4 0.00018 26.3 7.0 58 117-179 3-60 (91)
65 cd08172 GlyDH-like1 Glycerol d 83.6 2.6 5.7E-05 37.0 5.5 65 116-182 24-88 (347)
66 COG2984 ABC-type uncharacteriz 83.5 4 8.6E-05 37.7 6.7 64 118-181 33-99 (322)
67 cd01988 Na_H_Antiporter_C The 83.1 6.7 0.00015 27.8 6.5 53 129-184 56-108 (132)
68 cd06318 PBP1_ABC_sugar_binding 83.1 12 0.00026 29.8 8.6 59 118-178 2-63 (282)
69 cd01542 PBP1_TreR_like Ligand- 83.1 12 0.00026 29.4 8.4 60 118-179 2-64 (259)
70 PRK13805 bifunctional acetalde 82.4 4.2 9.2E-05 40.5 6.9 65 116-182 481-551 (862)
71 PRK10586 putative oxidoreducta 82.1 4.8 0.0001 36.3 6.6 63 117-182 36-98 (362)
72 cd06305 PBP1_methylthioribose_ 82.1 13 0.00029 29.3 8.4 61 117-179 1-64 (273)
73 cd06273 PBP1_GntR_like_1 This 82.1 14 0.0003 29.1 8.5 58 118-177 2-62 (268)
74 cd08169 DHQ-like Dehydroquinat 82.0 8.9 0.00019 34.2 8.3 64 116-181 24-94 (344)
75 cd01539 PBP1_GGBP Periplasmic 81.9 13 0.00028 31.0 8.7 62 117-178 1-65 (303)
76 cd01452 VWA_26S_proteasome_sub 81.9 14 0.0003 31.0 8.9 62 116-177 108-172 (187)
77 PF00763 THF_DHG_CYH: Tetrahyd 81.7 5.7 0.00012 30.5 6.0 52 117-168 32-84 (117)
78 cd06321 PBP1_ABC_sugar_binding 81.4 16 0.00034 29.1 8.7 60 118-177 2-64 (271)
79 PRK08862 short chain dehydroge 81.4 13 0.00028 30.3 8.4 27 154-180 64-93 (227)
80 cd08184 Fe-ADH3 Iron-containin 81.3 7.2 0.00016 35.1 7.4 63 117-182 27-93 (347)
81 PRK10076 pyruvate formate lyas 81.3 9.9 0.00022 32.1 7.9 59 116-175 132-211 (213)
82 COG1597 LCB5 Sphingosine kinas 81.3 5.3 0.00011 35.2 6.5 55 122-179 13-67 (301)
83 cd01537 PBP1_Repressors_Sugar_ 80.9 21 0.00045 27.3 8.9 62 118-181 2-66 (264)
84 PF03358 FMN_red: NADPH-depend 79.9 19 0.0004 27.1 8.3 57 117-177 2-77 (152)
85 cd03174 DRE_TIM_metallolyase D 79.7 10 0.00022 31.1 7.2 49 127-175 113-164 (265)
86 COG0695 GrxC Glutaredoxin and 79.7 8.5 0.00019 27.6 6.1 51 124-175 7-59 (80)
87 cd06283 PBP1_RegR_EndR_KdgR_li 79.5 20 0.00044 28.0 8.6 59 118-178 2-63 (267)
88 cd06296 PBP1_CatR_like Ligand- 79.1 23 0.0005 28.0 8.9 60 118-179 2-64 (270)
89 cd07943 DRE_TIM_HOA 4-hydroxy- 78.9 12 0.00026 31.8 7.7 61 121-182 104-165 (263)
90 PRK10703 DNA-binding transcrip 78.3 25 0.00054 29.4 9.3 62 116-179 60-124 (341)
91 cd06298 PBP1_CcpA_like Ligand- 78.2 21 0.00047 28.0 8.4 59 118-178 2-63 (268)
92 cd08174 G1PDH-like Glycerol-1- 77.9 10 0.00022 33.1 7.1 61 116-182 26-87 (331)
93 cd06280 PBP1_LacI_like_4 Ligan 77.7 23 0.00049 28.1 8.5 59 118-178 2-63 (263)
94 PF01380 SIS: SIS domain SIS d 77.6 19 0.00041 25.9 7.4 61 117-178 6-87 (131)
95 cd00859 HisRS_anticodon HisRS 77.5 17 0.00036 24.0 6.6 56 117-177 3-58 (91)
96 PRK05867 short chain dehydroge 77.3 20 0.00044 28.7 8.2 44 115-164 8-51 (253)
97 cd06323 PBP1_ribose_binding Pe 76.7 20 0.00043 28.1 7.8 58 118-177 2-62 (268)
98 PRK10014 DNA-binding transcrip 76.6 29 0.00063 28.9 9.2 62 116-179 65-129 (342)
99 cd06293 PBP1_LacI_like_11 Liga 76.6 25 0.00054 27.9 8.5 58 118-177 2-62 (269)
100 cd06286 PBP1_CcpB_like Ligand- 76.4 25 0.00055 27.6 8.4 58 118-177 2-62 (260)
101 cd01538 PBP1_ABC_xylose_bindin 76.4 25 0.00053 28.8 8.6 60 118-179 2-64 (288)
102 cd05212 NAD_bind_m-THF_DH_Cycl 76.1 6 0.00013 31.6 4.8 56 117-184 30-85 (140)
103 cd06308 PBP1_sensor_kinase_lik 75.3 29 0.00062 27.7 8.5 58 118-177 2-63 (270)
104 cd06311 PBP1_ABC_sugar_binding 75.3 28 0.00061 27.8 8.5 33 144-176 34-66 (274)
105 cd06300 PBP1_ABC_sugar_binding 75.2 29 0.00064 27.6 8.5 35 142-176 32-66 (272)
106 cd06275 PBP1_PurR Ligand-bindi 74.6 30 0.00066 27.2 8.4 59 118-178 2-63 (269)
107 cd06292 PBP1_LacI_like_10 Liga 74.3 30 0.00065 27.4 8.4 58 118-177 2-62 (273)
108 cd01541 PBP1_AraR Ligand-bindi 74.2 31 0.00067 27.4 8.4 60 118-179 2-64 (273)
109 PRK05447 1-deoxy-D-xylulose 5- 74.1 17 0.00036 34.2 7.9 46 117-165 3-48 (385)
110 cd01540 PBP1_arabinose_binding 74.1 24 0.00051 28.4 7.8 40 134-176 21-60 (289)
111 PRK06203 aroB 3-dehydroquinate 74.0 16 0.00035 33.5 7.6 67 116-182 43-123 (389)
112 cd03027 GRX_DEP Glutaredoxin ( 73.8 25 0.00053 23.7 7.6 47 127-175 10-57 (73)
113 TIGR03566 FMN_reduc_MsuE FMN r 73.8 23 0.00049 28.0 7.5 58 117-178 1-76 (174)
114 cd06289 PBP1_MalI_like Ligand- 73.3 38 0.00082 26.5 8.6 60 118-179 2-64 (268)
115 PRK08195 4-hyroxy-2-oxovalerat 72.9 26 0.00056 31.6 8.5 59 121-180 107-166 (337)
116 cd06310 PBP1_ABC_sugar_binding 72.2 29 0.00063 27.5 7.8 59 117-177 1-64 (273)
117 PF05036 SPOR: Sporulation rel 72.2 23 0.00051 23.2 6.3 58 117-175 4-74 (76)
118 cd06315 PBP1_ABC_sugar_binding 71.8 39 0.00084 27.5 8.7 60 117-178 2-64 (280)
119 cd06290 PBP1_LacI_like_9 Ligan 71.8 44 0.00095 26.4 8.7 60 118-179 2-64 (265)
120 KOG1208 Dehydrogenases with di 71.7 12 0.00025 33.6 6.1 49 113-167 32-80 (314)
121 PF13528 Glyco_trans_1_3: Glyc 71.6 22 0.00047 29.5 7.2 57 115-181 192-261 (318)
122 cd06302 PBP1_LsrB_Quorum_Sensi 71.4 37 0.0008 28.1 8.5 59 118-178 2-64 (298)
123 cd06320 PBP1_allose_binding Pe 71.2 35 0.00075 27.2 8.1 60 118-177 2-64 (275)
124 cd00861 ProRS_anticodon_short 70.7 13 0.00028 25.7 4.9 57 117-178 3-62 (94)
125 cd06270 PBP1_GalS_like Ligand 70.1 43 0.00092 26.6 8.3 59 118-178 2-63 (268)
126 cd06281 PBP1_LacI_like_5 Ligan 69.6 40 0.00088 26.8 8.1 60 118-179 2-64 (269)
127 cd08196 DHQS-like1 Dehydroquin 69.5 24 0.00051 31.9 7.6 63 116-182 20-88 (346)
128 cd01536 PBP1_ABC_sugar_binding 69.4 51 0.0011 25.5 8.5 59 118-178 2-63 (267)
129 PLN02958 diacylglycerol kinase 69.1 24 0.00053 33.3 7.8 60 117-179 113-177 (481)
130 TIGR00236 wecB UDP-N-acetylglu 69.1 24 0.00051 30.2 7.1 37 117-153 2-39 (365)
131 PF03129 HGTP_anticodon: Antic 68.9 22 0.00048 24.8 5.8 55 118-177 2-59 (94)
132 cd01575 PBP1_GntR Ligand-bindi 68.8 50 0.0011 25.8 8.4 59 118-178 2-63 (268)
133 PF06258 Mito_fiss_Elm1: Mitoc 68.8 20 0.00044 31.9 6.9 58 114-173 145-211 (311)
134 TIGR03217 4OH_2_O_val_ald 4-hy 68.1 31 0.00067 31.1 8.0 56 118-174 104-160 (333)
135 TIGR03405 Phn_Fe-ADH phosphona 68.0 15 0.00033 32.6 6.0 63 116-182 24-92 (355)
136 PRK13394 3-hydroxybutyrate deh 67.6 55 0.0012 26.0 8.5 28 114-143 5-32 (262)
137 COG0371 GldA Glycerol dehydrog 67.4 18 0.0004 33.6 6.5 66 116-182 31-96 (360)
138 cd07944 DRE_TIM_HOA_like 4-hyd 67.2 34 0.00073 29.6 7.7 51 124-174 104-155 (266)
139 PF00462 Glutaredoxin: Glutare 67.1 21 0.00045 23.2 5.1 48 126-175 7-55 (60)
140 PRK10310 PTS system galactitol 66.9 38 0.00083 25.0 7.0 58 115-181 2-61 (94)
141 PRK10423 transcriptional repre 66.7 59 0.0013 26.8 8.8 62 115-178 56-120 (327)
142 cd06282 PBP1_GntR_like_2 Ligan 66.6 60 0.0013 25.3 8.5 20 156-175 41-60 (266)
143 PF13685 Fe-ADH_2: Iron-contai 66.3 11 0.00025 32.8 4.7 66 116-181 20-86 (250)
144 cd03522 MoeA_like MoeA_like. T 66.3 30 0.00066 31.2 7.6 66 115-182 159-231 (312)
145 TIGR02955 TMAO_TorT TMAO reduc 66.2 44 0.00094 27.6 7.9 59 118-178 2-65 (295)
146 cd04795 SIS SIS domain. SIS (S 65.8 38 0.00081 22.7 6.8 32 144-175 48-79 (87)
147 cd06322 PBP1_ABC_sugar_binding 65.6 57 0.0012 25.8 8.2 43 132-176 19-61 (267)
148 cd06317 PBP1_ABC_sugar_binding 65.6 65 0.0014 25.4 8.5 44 132-177 20-63 (275)
149 PRK12361 hypothetical protein; 65.5 27 0.00059 32.8 7.3 60 116-179 243-306 (547)
150 cd00738 HGTP_anticodon HGTP an 65.4 29 0.00063 23.6 5.8 57 117-178 3-62 (94)
151 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.3 37 0.00081 29.3 7.7 64 117-181 106-172 (275)
152 cd06299 PBP1_LacI_like_13 Liga 65.2 64 0.0014 25.3 8.4 44 131-176 18-61 (265)
153 cd00858 GlyRS_anticodon GlyRS 64.7 45 0.00098 25.0 7.2 58 115-178 26-85 (121)
154 PF02006 DUF137: Protein of un 64.7 27 0.00058 30.2 6.5 55 131-187 20-75 (178)
155 smart00854 PGA_cap Bacterial c 64.0 21 0.00046 29.6 5.8 47 127-176 158-211 (239)
156 cd06291 PBP1_Qymf_like Ligand 63.9 69 0.0015 25.3 8.4 59 118-178 2-63 (265)
157 PRK11303 DNA-binding transcrip 63.8 73 0.0016 26.3 8.8 62 115-178 61-125 (328)
158 PRK07109 short chain dehydroge 63.8 66 0.0014 27.9 9.0 43 115-163 7-49 (334)
159 cd06303 PBP1_LuxPQ_Quorum_Sens 63.6 63 0.0014 26.2 8.3 61 118-178 2-68 (280)
160 cd03418 GRX_GRXb_1_3_like Glut 63.4 40 0.00088 22.2 6.2 50 125-176 7-58 (75)
161 PRK14177 bifunctional 5,10-met 63.3 12 0.00027 33.6 4.5 35 146-185 183-217 (284)
162 PRK06940 short chain dehydroge 63.1 39 0.00084 28.0 7.1 19 117-138 3-21 (275)
163 TIGR02417 fruct_sucro_rep D-fr 62.7 89 0.0019 25.9 9.3 61 116-178 61-124 (327)
164 cd06379 PBP1_iGluR_NMDA_NR1 N- 62.6 20 0.00043 30.9 5.5 64 116-179 155-222 (377)
165 PRK07063 short chain dehydroge 62.5 79 0.0017 25.4 8.6 43 115-163 6-48 (260)
166 PRK10727 DNA-binding transcrip 62.5 79 0.0017 26.6 8.9 63 115-179 59-124 (343)
167 cd06386 PBP1_NPR_C_like Ligand 62.4 14 0.00031 32.3 4.7 61 116-179 138-203 (387)
168 KOG3857 Alcohol dehydrogenase, 62.2 18 0.00039 34.9 5.5 68 116-183 71-140 (465)
169 cd06353 PBP1_BmpA_Med_like Per 62.0 63 0.0014 27.2 8.3 58 119-178 4-65 (258)
170 PRK05876 short chain dehydroge 61.9 63 0.0014 26.9 8.2 27 114-142 4-30 (275)
171 PRK14168 bifunctional 5,10-met 61.7 14 0.00029 33.5 4.5 51 130-185 173-223 (297)
172 PF01522 Polysacc_deac_1: Poly 61.6 27 0.00059 24.9 5.3 55 117-173 6-60 (123)
173 cd06354 PBP1_BmpA_PnrA_like Pe 61.3 67 0.0015 26.2 8.1 58 117-177 1-64 (265)
174 cd00578 L-fuc_L-ara-isomerases 61.1 37 0.0008 31.0 7.2 60 116-177 1-70 (452)
175 cd06267 PBP1_LacI_sugar_bindin 61.0 73 0.0016 24.4 8.6 63 118-182 2-67 (264)
176 PF02882 THF_DHG_CYH_C: Tetrah 60.8 13 0.00028 30.5 3.9 59 117-186 37-95 (160)
177 PRK09739 hypothetical protein; 60.8 69 0.0015 25.8 8.0 59 116-178 4-87 (199)
178 PRK14987 gluconate operon tran 60.7 91 0.002 26.0 8.9 60 116-177 64-126 (331)
179 PRK14190 bifunctional 5,10-met 60.3 31 0.00068 31.0 6.5 52 117-168 35-87 (284)
180 cd06312 PBP1_ABC_sugar_binding 60.1 79 0.0017 25.3 8.2 17 127-143 42-58 (271)
181 PRK14187 bifunctional 5,10-met 60.0 14 0.00031 33.3 4.4 34 147-185 185-218 (294)
182 PRK08085 gluconate 5-dehydroge 60.0 88 0.0019 25.0 8.5 43 115-163 8-50 (254)
183 TIGR03590 PseG pseudaminic aci 59.4 30 0.00064 29.6 6.0 35 116-150 171-205 (279)
184 PRK09701 D-allose transporter 59.2 90 0.0019 26.2 8.7 66 114-179 23-91 (311)
185 cd07025 Peptidase_S66 LD-Carbo 59.0 34 0.00074 29.7 6.3 58 126-183 11-75 (282)
186 cd01989 STK_N The N-terminal d 58.8 59 0.0013 23.8 6.8 51 131-184 67-117 (146)
187 cd06274 PBP1_FruR Ligand bindi 58.7 90 0.0019 24.7 8.5 60 118-179 2-64 (264)
188 PRK13057 putative lipid kinase 58.6 41 0.00089 28.6 6.7 47 129-179 13-59 (287)
189 PF02016 Peptidase_S66: LD-car 58.4 42 0.0009 29.3 6.8 64 118-183 1-75 (284)
190 PRK08265 short chain dehydroge 58.3 66 0.0014 26.1 7.6 41 114-160 4-44 (261)
191 cd03059 GST_N_SspA GST_N famil 58.3 23 0.00049 23.2 4.1 32 127-158 8-39 (73)
192 cd08198 DHQS-like2 Dehydroquin 58.0 50 0.0011 30.5 7.5 66 116-181 31-110 (369)
193 PRK13761 hypothetical protein; 58.0 36 0.00078 30.7 6.4 103 76-187 33-136 (248)
194 PF06506 PrpR_N: Propionate ca 57.9 18 0.0004 28.9 4.2 60 113-179 75-134 (176)
195 PRK00061 ribH 6,7-dimethyl-8-r 57.9 33 0.00073 28.1 5.8 62 114-178 11-79 (154)
196 PF00682 HMGL-like: HMGL-like 57.8 39 0.00086 27.6 6.2 59 117-175 82-155 (237)
197 TIGR02181 GRX_bact Glutaredoxi 57.8 53 0.0012 22.2 6.0 50 125-176 6-56 (79)
198 cd05008 SIS_GlmS_GlmD_1 SIS (S 57.5 71 0.0015 23.1 8.2 59 120-178 3-81 (126)
199 TIGR03568 NeuC_NnaA UDP-N-acet 57.3 25 0.00055 31.3 5.4 41 117-157 2-43 (365)
200 PRK14177 bifunctional 5,10-met 56.9 39 0.00084 30.5 6.5 53 116-168 35-88 (284)
201 PLN02616 tetrahydrofolate dehy 56.9 16 0.00036 34.2 4.3 51 130-185 214-289 (364)
202 PRK08277 D-mannonate oxidoredu 56.9 1E+02 0.0022 25.1 8.4 27 115-143 9-35 (278)
203 cd06324 PBP1_ABC_sugar_binding 56.9 91 0.002 25.9 8.3 16 126-141 40-55 (305)
204 PRK10355 xylF D-xylose transpo 56.8 1E+02 0.0022 26.5 8.9 63 115-179 25-90 (330)
205 cd07948 DRE_TIM_HCS Saccharomy 56.4 78 0.0017 27.5 8.1 47 128-174 111-158 (262)
206 PRK14021 bifunctional shikimat 56.3 59 0.0013 31.1 7.9 64 117-181 211-280 (542)
207 PRK09492 treR trehalose repres 56.2 1.1E+02 0.0025 25.1 9.0 60 116-177 63-125 (315)
208 cd06278 PBP1_LacI_like_2 Ligan 55.7 97 0.0021 24.2 8.5 58 118-178 2-62 (266)
209 PRK13059 putative lipid kinase 55.7 37 0.00079 29.3 6.0 53 123-179 13-65 (295)
210 PLN02404 6,7-dimethyl-8-ribity 55.5 56 0.0012 26.7 6.7 60 115-177 7-73 (141)
211 TIGR00676 fadh2 5,10-methylene 55.2 63 0.0014 27.9 7.3 52 130-181 46-97 (272)
212 PRK14186 bifunctional 5,10-met 55.1 43 0.00092 30.4 6.5 52 117-168 35-87 (297)
213 PRK06139 short chain dehydroge 55.0 77 0.0017 27.8 7.9 27 155-181 67-95 (330)
214 PRK14174 bifunctional 5,10-met 54.7 45 0.00098 30.1 6.6 53 116-168 33-86 (295)
215 PRK07666 fabG 3-ketoacyl-(acyl 54.5 85 0.0018 24.8 7.4 12 170-181 84-95 (239)
216 PRK12757 cell division protein 54.5 85 0.0018 28.2 8.2 65 116-180 183-256 (256)
217 cd06306 PBP1_TorT-like TorT-li 54.5 90 0.0019 25.2 7.7 10 165-174 76-85 (268)
218 smart00642 Aamy Alpha-amylase 54.3 56 0.0012 26.3 6.5 49 126-175 16-88 (166)
219 PRK14188 bifunctional 5,10-met 54.3 51 0.0011 29.7 6.8 53 116-168 34-87 (296)
220 PRK14173 bifunctional 5,10-met 54.0 49 0.0011 29.9 6.7 53 116-168 31-84 (287)
221 PRK14169 bifunctional 5,10-met 53.8 49 0.0011 29.8 6.6 53 116-168 32-85 (282)
222 cd02810 DHOD_DHPD_FMN Dihydroo 53.8 96 0.0021 26.2 8.1 35 116-152 100-135 (289)
223 PRK14180 bifunctional 5,10-met 53.7 20 0.00044 32.2 4.2 47 130-185 170-216 (282)
224 cd03031 GRX_GRX_like Glutaredo 53.6 53 0.0012 26.6 6.3 29 125-153 13-41 (147)
225 PRK06455 riboflavin synthase; 53.6 88 0.0019 26.3 7.7 59 116-177 2-63 (155)
226 PRK12330 oxaloacetate decarbox 53.5 80 0.0017 30.6 8.4 67 117-184 112-181 (499)
227 PRK05872 short chain dehydroge 53.5 96 0.0021 26.0 8.0 27 114-142 7-33 (296)
228 PRK14182 bifunctional 5,10-met 53.5 22 0.00048 32.0 4.4 46 130-184 169-214 (282)
229 cd06602 GH31_MGAM_SI_GAA This 53.5 58 0.0013 29.1 7.0 51 127-177 22-86 (339)
230 cd00293 USP_Like Usp: Universa 53.5 68 0.0015 21.7 6.8 41 141-185 68-108 (130)
231 PF04028 DUF374: Domain of unk 53.4 59 0.0013 23.7 5.9 58 117-179 11-68 (74)
232 PRK06200 2,3-dihydroxy-2,3-dih 53.4 80 0.0017 25.5 7.2 61 115-181 5-91 (263)
233 PRK14834 undecaprenyl pyrophos 53.3 1.2E+02 0.0025 26.9 8.7 81 104-186 4-115 (249)
234 PRK14180 bifunctional 5,10-met 53.3 50 0.0011 29.7 6.6 53 116-168 33-86 (282)
235 cd01653 GATase1 Type 1 glutami 53.0 46 0.001 21.3 4.8 37 118-156 1-37 (115)
236 TIGR02180 GRX_euk Glutaredoxin 52.7 46 0.001 22.1 4.9 42 124-165 5-48 (84)
237 cd06301 PBP1_rhizopine_binding 52.6 84 0.0018 24.9 7.1 52 121-175 35-86 (272)
238 PRK14192 bifunctional 5,10-met 52.4 88 0.0019 27.7 7.9 54 116-169 35-89 (283)
239 PF03853 YjeF_N: YjeF-related 52.3 1.1E+02 0.0023 24.5 7.8 62 113-174 23-85 (169)
240 PRK05854 short chain dehydroge 52.0 1.1E+02 0.0023 26.2 8.2 43 113-161 11-53 (313)
241 PRK08643 acetoin reductase; Va 51.8 76 0.0017 25.3 6.8 25 156-180 63-89 (256)
242 PRK08213 gluconate 5-dehydroge 51.7 1.1E+02 0.0023 24.6 7.7 40 115-160 11-50 (259)
243 cd05014 SIS_Kpsf KpsF-like pro 51.7 91 0.002 22.6 8.2 65 120-184 4-88 (128)
244 cd06592 GH31_glucosidase_KIAA1 51.6 56 0.0012 28.5 6.5 53 125-178 26-91 (303)
245 TIGR02667 moaB_proteo molybden 51.6 1.2E+02 0.0025 24.5 7.9 66 115-181 4-74 (163)
246 PRK14172 bifunctional 5,10-met 51.5 61 0.0013 29.2 6.8 53 116-168 34-87 (278)
247 PRK14181 bifunctional 5,10-met 51.5 55 0.0012 29.6 6.6 53 116-168 28-81 (287)
248 cd06368 PBP1_iGluR_non_NMDA_li 51.5 86 0.0019 25.9 7.3 61 116-178 128-188 (324)
249 TIGR00677 fadh2_euk methylenet 51.2 92 0.002 27.4 7.8 66 117-182 32-99 (281)
250 PRK07074 short chain dehydroge 51.1 1.1E+02 0.0023 24.5 7.5 24 117-142 3-26 (257)
251 PF11965 DUF3479: Domain of un 51.0 55 0.0012 27.4 6.1 58 117-176 2-63 (164)
252 cd06367 PBP1_iGluR_NMDA N-term 50.9 34 0.00074 29.2 5.0 131 47-178 58-202 (362)
253 PRK10401 DNA-binding transcrip 50.8 1.5E+02 0.0033 24.9 9.0 62 115-178 59-123 (346)
254 PRK14175 bifunctional 5,10-met 50.7 52 0.0011 29.6 6.3 53 116-168 34-87 (286)
255 PRK14171 bifunctional 5,10-met 50.7 63 0.0014 29.2 6.8 53 116-168 34-87 (288)
256 PRK14193 bifunctional 5,10-met 50.6 59 0.0013 29.3 6.6 52 117-168 35-87 (284)
257 cd06393 PBP1_iGluR_Kainate_Glu 50.5 49 0.0011 28.8 6.0 60 116-177 140-199 (384)
258 PF10137 TIR-like: Predicted n 50.4 1.1E+02 0.0023 24.4 7.3 58 118-177 2-59 (125)
259 PRK09432 metF 5,10-methylenete 50.3 67 0.0015 28.5 6.9 52 130-181 70-121 (296)
260 PF13727 CoA_binding_3: CoA-bi 50.2 43 0.00094 24.9 4.9 43 133-176 132-174 (175)
261 PRK07097 gluconate 5-dehydroge 49.9 1.1E+02 0.0023 24.8 7.5 25 116-142 10-34 (265)
262 TIGR02189 GlrX-like_plant Glut 49.9 90 0.002 23.0 6.5 36 118-155 10-45 (99)
263 PRK01060 endonuclease IV; Prov 49.9 98 0.0021 25.7 7.4 54 117-173 3-63 (281)
264 TIGR02190 GlrX-dom Glutaredoxi 49.5 75 0.0016 21.9 5.7 34 116-151 8-41 (79)
265 PRK08589 short chain dehydroge 49.4 1.2E+02 0.0026 24.9 7.8 26 156-181 66-93 (272)
266 cd03045 GST_N_Delta_Epsilon GS 49.2 32 0.00069 22.6 3.7 36 129-164 10-45 (74)
267 PRK14179 bifunctional 5,10-met 49.2 66 0.0014 29.0 6.7 53 116-168 34-87 (284)
268 PRK07453 protochlorophyllide o 49.2 1.6E+02 0.0035 24.8 8.8 26 156-181 67-94 (322)
269 PRK08177 short chain dehydroge 49.0 1.3E+02 0.0028 23.7 8.1 26 156-181 57-82 (225)
270 cd06597 GH31_transferase_CtsY 48.9 88 0.0019 28.0 7.4 50 125-175 20-103 (340)
271 PF13458 Peripla_BP_6: Peripla 48.9 42 0.00091 27.6 5.1 64 116-180 136-200 (343)
272 cd00537 MTHFR Methylenetetrahy 48.9 84 0.0018 26.7 7.0 53 129-181 45-97 (274)
273 cd07939 DRE_TIM_NifV Streptomy 48.9 1.2E+02 0.0026 25.7 8.0 57 118-174 85-156 (259)
274 PRK07478 short chain dehydroge 48.7 1.4E+02 0.003 23.9 8.5 27 155-181 66-94 (254)
275 COG0167 PyrD Dihydroorotate de 48.6 62 0.0014 29.5 6.5 97 71-178 95-194 (310)
276 cd03060 GST_N_Omega_like GST_N 48.5 44 0.00095 22.2 4.3 31 127-157 8-38 (71)
277 cd07381 MPP_CapA CapA and rela 48.5 46 0.00099 27.4 5.2 53 127-185 160-219 (239)
278 PRK14189 bifunctional 5,10-met 48.2 71 0.0015 28.8 6.7 53 116-168 34-87 (285)
279 cd06594 GH31_glucosidase_YihQ 48.1 81 0.0017 27.9 7.0 50 127-177 21-91 (317)
280 cd06350 PBP1_GPCR_family_C_lik 48.1 1.6E+02 0.0035 24.5 8.4 64 116-179 161-226 (348)
281 PRK14166 bifunctional 5,10-met 48.1 67 0.0014 28.9 6.5 52 117-168 33-85 (282)
282 PLN02516 methylenetetrahydrofo 48.0 74 0.0016 29.0 6.9 53 116-168 41-94 (299)
283 PF00781 DAGK_cat: Diacylglyce 48.0 1.1E+02 0.0025 22.7 7.4 46 131-179 17-63 (130)
284 PRK01966 ddl D-alanyl-alanine 47.9 29 0.00063 30.3 4.2 38 115-154 3-45 (333)
285 cd06347 PBP1_ABC_ligand_bindin 47.9 1.3E+02 0.0028 24.7 7.7 64 116-180 136-201 (334)
286 TIGR02194 GlrX_NrdH Glutaredox 47.8 74 0.0016 21.5 5.4 39 122-163 4-42 (72)
287 COG0381 WecB UDP-N-acetylgluco 47.8 52 0.0011 31.2 6.0 53 115-167 3-56 (383)
288 TIGR01884 cas_HTH CRISPR locus 47.7 1.3E+02 0.0028 24.6 7.7 84 93-181 7-98 (203)
289 cd04740 DHOD_1B_like Dihydroor 47.5 1.2E+02 0.0026 25.9 7.8 19 158-176 167-185 (296)
290 PLN02897 tetrahydrofolate dehy 47.3 66 0.0014 30.0 6.5 53 116-168 88-141 (345)
291 PRK14191 bifunctional 5,10-met 47.2 68 0.0015 28.9 6.5 52 117-168 34-86 (285)
292 PF13409 GST_N_2: Glutathione 47.1 44 0.00095 22.6 4.2 28 129-156 3-30 (70)
293 cd06313 PBP1_ABC_sugar_binding 47.0 93 0.002 25.2 6.7 56 118-176 31-86 (272)
294 cd06316 PBP1_ABC_sugar_binding 47.0 1.5E+02 0.0032 24.2 7.9 13 131-143 18-30 (294)
295 TIGR02109 PQQ_syn_pqqE coenzym 46.9 68 0.0015 28.0 6.3 52 122-173 125-176 (358)
296 TIGR02495 NrdG2 anaerobic ribo 46.8 78 0.0017 24.9 6.1 50 121-170 131-183 (191)
297 PF10662 PduV-EutP: Ethanolami 46.8 76 0.0017 25.9 6.2 49 115-164 90-142 (143)
298 cd06380 PBP1_iGluR_AMPA N-term 46.7 1.3E+02 0.0029 25.8 7.9 61 116-177 127-190 (382)
299 PRK11253 ldcA L,D-carboxypepti 46.6 1E+02 0.0023 27.4 7.5 62 117-182 3-78 (305)
300 PRK12938 acetyacetyl-CoA reduc 46.5 1.4E+02 0.0031 23.5 8.3 28 155-182 64-93 (246)
301 cd07062 Peptidase_S66_mccF_lik 46.5 98 0.0021 27.2 7.3 66 117-182 2-78 (308)
302 PRK14176 bifunctional 5,10-met 46.3 86 0.0019 28.4 7.0 53 116-168 40-93 (287)
303 cd06371 PBP1_sensory_GC_DEF_li 46.3 1.5E+02 0.0032 26.1 8.3 62 116-178 133-196 (382)
304 COG1879 RbsB ABC-type sugar tr 46.1 1.2E+02 0.0026 25.5 7.4 70 116-185 34-106 (322)
305 PRK10329 glutaredoxin-like pro 46.0 1.1E+02 0.0023 21.8 6.8 40 121-163 5-44 (81)
306 PF02670 DXP_reductoisom: 1-de 46.0 62 0.0013 26.0 5.5 44 121-166 3-46 (129)
307 PRK06124 gluconate 5-dehydroge 45.9 1.3E+02 0.0028 24.0 7.3 25 116-142 11-35 (256)
308 TIGR01481 ccpA catabolite cont 45.9 1.7E+02 0.0037 24.2 9.0 60 116-177 60-122 (329)
309 PRK14186 bifunctional 5,10-met 45.8 33 0.00072 31.0 4.3 47 130-185 170-216 (297)
310 PRK14178 bifunctional 5,10-met 45.7 80 0.0017 28.4 6.7 53 116-168 28-81 (279)
311 PRK14194 bifunctional 5,10-met 45.7 74 0.0016 28.9 6.5 53 116-168 35-88 (301)
312 PRK14453 chloramphenicol/florf 45.7 1E+02 0.0023 28.1 7.5 61 117-177 252-326 (347)
313 PRK14167 bifunctional 5,10-met 45.5 77 0.0017 28.8 6.6 52 117-168 34-86 (297)
314 TIGR01205 D_ala_D_alaTIGR D-al 45.5 25 0.00054 29.6 3.3 60 117-178 1-71 (315)
315 PF09587 PGA_cap: Bacterial ca 45.5 64 0.0014 27.0 5.7 45 132-176 171-222 (250)
316 cd03036 ArsC_like Arsenate Red 45.4 53 0.0012 24.6 4.8 38 128-165 9-47 (111)
317 cd06304 PBP1_BmpA_like Peripla 45.4 1.1E+02 0.0024 24.6 6.9 42 132-176 21-62 (260)
318 PRK14168 bifunctional 5,10-met 45.4 76 0.0016 28.8 6.5 53 116-168 35-88 (297)
319 COG0431 Predicted flavoprotein 45.3 1.1E+02 0.0024 24.8 6.9 69 116-186 1-84 (184)
320 PRK09389 (R)-citramalate synth 45.2 1.4E+02 0.003 28.5 8.5 59 118-176 89-162 (488)
321 PRK08339 short chain dehydroge 45.2 1.6E+02 0.0035 24.1 8.0 27 115-143 7-33 (263)
322 COG4026 Uncharacterized protei 45.1 1.1E+02 0.0023 28.1 7.3 56 117-176 8-63 (290)
323 PRK14190 bifunctional 5,10-met 44.9 39 0.00084 30.4 4.6 47 130-185 170-216 (284)
324 PRK14184 bifunctional 5,10-met 44.9 81 0.0018 28.5 6.6 53 116-168 33-86 (286)
325 PRK08303 short chain dehydroge 44.8 1.5E+02 0.0033 25.4 8.0 26 116-143 8-33 (305)
326 TIGR02405 trehalos_R_Ecol treh 44.7 1.8E+02 0.0039 24.1 9.0 61 115-177 59-122 (311)
327 PRK10569 NAD(P)H-dependent FMN 44.7 1.8E+02 0.0039 24.0 8.6 57 117-177 2-73 (191)
328 TIGR02660 nifV_homocitr homoci 44.6 1.3E+02 0.0029 27.0 7.9 47 128-174 112-159 (365)
329 PRK06505 enoyl-(acyl carrier p 44.5 1.1E+02 0.0024 25.4 7.0 30 114-143 5-34 (271)
330 cd03419 GRX_GRXh_1_2_like Glut 44.3 94 0.002 20.7 5.6 40 125-164 7-46 (82)
331 cd06374 PBP1_mGluR_groupI Liga 44.2 47 0.001 30.1 5.0 62 116-177 187-252 (472)
332 PRK14170 bifunctional 5,10-met 44.2 80 0.0017 28.5 6.4 53 116-168 33-86 (284)
333 PRK10792 bifunctional 5,10-met 44.2 78 0.0017 28.6 6.4 53 116-168 35-88 (285)
334 PRK01261 aroD 3-dehydroquinate 44.0 25 0.00053 30.4 3.1 89 79-173 45-148 (229)
335 PLN02204 diacylglycerol kinase 43.9 77 0.0017 31.7 6.8 55 122-179 170-227 (601)
336 PRK15414 phosphomannomutase Cp 43.9 1.1E+02 0.0025 28.2 7.5 65 115-181 170-248 (456)
337 cd06319 PBP1_ABC_sugar_binding 43.9 1.6E+02 0.0035 23.3 8.2 14 125-138 38-51 (277)
338 cd02940 DHPD_FMN Dihydropyrimi 43.8 88 0.0019 27.2 6.5 54 114-168 99-165 (299)
339 cd04509 PBP1_ABC_transporter_G 43.8 1.3E+02 0.0029 23.3 6.9 37 142-178 38-75 (299)
340 PLN02516 methylenetetrahydrofo 43.6 36 0.00079 30.9 4.2 46 130-184 179-224 (299)
341 PLN02837 threonine-tRNA ligase 43.6 1E+02 0.0022 30.1 7.4 66 107-178 508-573 (614)
342 PRK07062 short chain dehydroge 43.5 1.7E+02 0.0037 23.5 8.1 27 115-143 7-33 (265)
343 PRK11041 DNA-binding transcrip 43.3 1.8E+02 0.0039 23.7 9.1 61 115-177 35-98 (309)
344 cd03041 GST_N_2GST_N GST_N fam 43.1 81 0.0018 21.5 5.1 24 129-152 11-34 (77)
345 cd06591 GH31_xylosidase_XylS X 43.1 1E+02 0.0023 27.1 6.9 51 126-177 21-86 (319)
346 PRK06196 oxidoreductase; Provi 42.9 1.6E+02 0.0034 24.9 7.7 61 115-181 25-110 (315)
347 cd03029 GRX_hybridPRX5 Glutare 42.8 66 0.0014 21.5 4.5 32 122-153 5-36 (72)
348 PLN02274 inosine-5'-monophosph 42.8 63 0.0014 31.0 5.9 84 72-178 54-138 (505)
349 PLN02540 methylenetetrahydrofo 42.7 92 0.002 30.8 7.1 52 130-181 46-97 (565)
350 PRK09072 short chain dehydroge 42.5 1.8E+02 0.0039 23.4 7.7 13 169-181 79-91 (263)
351 PRK14183 bifunctional 5,10-met 42.4 89 0.0019 28.2 6.5 53 116-168 33-86 (281)
352 PRK14170 bifunctional 5,10-met 42.3 43 0.00093 30.2 4.5 47 130-185 169-215 (284)
353 cd06388 PBP1_iGluR_AMPA_GluR4 42.3 1.5E+02 0.0032 26.4 7.7 59 116-176 125-184 (371)
354 PRK05339 PEP synthetase regula 42.0 1.6E+02 0.0035 26.5 8.0 57 118-174 5-63 (269)
355 cd03132 GATase1_catalase Type 42.0 93 0.002 23.3 5.6 39 116-156 2-40 (142)
356 PRK13758 anaerobic sulfatase-m 42.0 83 0.0018 27.5 6.1 52 123-174 138-189 (370)
357 PRK08936 glucose-1-dehydrogena 42.0 1.8E+02 0.0039 23.4 7.6 26 116-143 7-32 (261)
358 PRK14184 bifunctional 5,10-met 42.0 48 0.001 29.9 4.7 50 130-184 169-218 (286)
359 PRK01231 ppnK inorganic polyph 41.9 35 0.00075 30.3 3.8 33 116-148 5-39 (295)
360 PRK12419 riboflavin synthase s 41.9 1.2E+02 0.0025 25.4 6.7 61 114-177 9-76 (158)
361 PRK14182 bifunctional 5,10-met 41.8 1E+02 0.0022 27.9 6.7 53 116-168 32-85 (282)
362 PRK14040 oxaloacetate decarbox 41.7 1.9E+02 0.0041 28.5 9.0 66 118-184 113-181 (593)
363 cd06292 PBP1_LacI_like_10 Liga 41.7 1.5E+02 0.0031 23.6 6.9 65 116-180 123-191 (273)
364 TIGR00853 pts-lac PTS system, 41.6 17 0.00036 27.1 1.5 38 116-154 4-43 (95)
365 cd05009 SIS_GlmS_GlmD_2 SIS (S 41.5 49 0.0011 24.4 4.0 43 102-144 49-91 (153)
366 PRK12331 oxaloacetate decarbox 41.5 2E+02 0.0044 27.3 8.9 67 117-184 111-180 (448)
367 PRK14187 bifunctional 5,10-met 41.4 1.1E+02 0.0023 27.9 6.8 53 116-168 34-87 (294)
368 cd06604 GH31_glucosidase_II_Ma 41.3 1.3E+02 0.0027 26.7 7.2 48 127-175 22-82 (339)
369 cd06277 PBP1_LacI_like_1 Ligan 41.3 1.8E+02 0.0039 23.0 8.4 47 129-177 19-65 (268)
370 PRK11858 aksA trans-homoaconit 41.3 1.4E+02 0.003 27.2 7.6 57 118-174 91-162 (378)
371 cd00758 MoCF_BD MoCF_BD: molyb 41.2 98 0.0021 23.6 5.7 48 132-181 22-69 (133)
372 PRK14467 ribosomal RNA large s 40.8 1.7E+02 0.0037 26.8 8.1 60 117-176 256-324 (348)
373 cd06284 PBP1_LacI_like_6 Ligan 40.7 1.7E+02 0.0038 22.8 8.7 44 131-176 18-61 (267)
374 TIGR02634 xylF D-xylose ABC tr 40.7 1.5E+02 0.0032 24.8 7.2 31 146-176 30-60 (302)
375 PRK14185 bifunctional 5,10-met 40.7 43 0.00093 30.3 4.2 51 130-185 169-219 (293)
376 cd04336 YeaK YeaK is an unchar 40.6 52 0.0011 25.3 4.2 32 132-163 2-33 (153)
377 cd03061 GST_N_CLIC GST_N famil 40.6 64 0.0014 24.2 4.5 39 125-163 19-57 (91)
378 cd06285 PBP1_LacI_like_7 Ligan 40.4 1.8E+02 0.004 22.9 8.5 42 132-175 19-60 (265)
379 PRK05301 pyrroloquinoline quin 40.4 1E+02 0.0023 27.2 6.5 53 122-174 134-186 (378)
380 PRK07677 short chain dehydroge 40.2 1.6E+02 0.0034 23.6 7.0 27 155-181 61-89 (252)
381 cd06595 GH31_xylosidase_XylS-l 40.2 1.3E+02 0.0029 26.1 7.0 50 127-177 23-94 (292)
382 PRK14166 bifunctional 5,10-met 40.2 48 0.001 29.8 4.4 47 130-185 169-215 (282)
383 PRK06947 glucose-1-dehydrogena 40.0 1.7E+02 0.0038 23.0 7.2 12 170-181 80-91 (248)
384 PF14528 LAGLIDADG_3: LAGLIDAD 39.9 40 0.00086 23.0 3.1 24 125-148 28-51 (77)
385 TIGR02883 spore_cwlD N-acetylm 39.8 1E+02 0.0022 25.0 6.0 54 127-180 28-93 (189)
386 PRK08703 short chain dehydroge 39.8 1.4E+02 0.0031 23.6 6.6 12 170-181 87-98 (239)
387 PRK06603 enoyl-(acyl carrier p 39.7 1.3E+02 0.0028 24.7 6.6 28 154-181 68-97 (260)
388 PRK14041 oxaloacetate decarbox 39.5 2E+02 0.0043 27.6 8.6 67 117-184 110-179 (467)
389 cd06593 GH31_xylosidase_YicI Y 39.1 1.6E+02 0.0035 25.4 7.3 52 126-178 21-87 (308)
390 cd01545 PBP1_SalR Ligand-bindi 39.0 1.9E+02 0.0041 22.7 8.7 14 130-143 44-57 (270)
391 PLN02530 histidine-tRNA ligase 39.0 1.4E+02 0.0031 28.0 7.5 57 116-177 402-458 (487)
392 PRK03708 ppnK inorganic polyph 39.0 38 0.00083 29.7 3.6 32 117-148 2-35 (277)
393 PRK03972 ribosomal biogenesis 39.0 1.7E+02 0.0036 25.7 7.4 63 112-184 102-164 (208)
394 PRK02645 ppnK inorganic polyph 38.8 58 0.0012 28.9 4.7 61 116-179 4-66 (305)
395 TIGR01289 LPOR light-dependent 38.7 2.5E+02 0.0054 24.0 8.4 25 156-180 65-91 (314)
396 KOG2835 Phosphoribosylamidoimi 38.7 43 0.00092 31.8 4.0 43 145-187 264-307 (373)
397 cd03048 GST_N_Ure2p_like GST_N 38.7 77 0.0017 21.4 4.4 30 121-152 4-33 (81)
398 cd00570 GST_N_family Glutathio 38.7 87 0.0019 18.9 4.3 30 129-158 10-39 (71)
399 PRK06720 hypothetical protein; 38.6 2E+02 0.0044 22.9 7.9 50 132-182 54-105 (169)
400 cd03409 Chelatase_Class_II Cla 38.6 1.4E+02 0.0029 20.9 7.5 59 118-176 3-64 (101)
401 PF11495 Regulator_TrmB: Archa 38.4 1E+02 0.0022 25.8 5.9 52 126-179 7-58 (233)
402 PRK13361 molybdenum cofactor b 38.3 1.5E+02 0.0033 26.0 7.2 50 125-174 136-187 (329)
403 cd06601 GH31_lyase_GLase GLase 38.3 1.4E+02 0.0031 26.9 7.2 50 126-176 21-83 (332)
404 PRK05565 fabG 3-ketoacyl-(acyl 38.1 1.9E+02 0.0042 22.5 7.8 24 117-142 6-29 (247)
405 KOG1602 Cis-prenyltransferase 38.1 1.9E+02 0.0041 26.6 7.8 49 114-162 36-104 (271)
406 PRK14569 D-alanyl-alanine synt 38.0 1.2E+02 0.0026 26.0 6.4 61 115-182 3-69 (296)
407 PRK14169 bifunctional 5,10-met 38.0 53 0.0011 29.6 4.4 47 130-185 168-214 (282)
408 cd02977 ArsC_family Arsenate R 37.9 1E+02 0.0022 22.3 5.2 40 126-165 7-47 (105)
409 PLN02780 ketoreductase/ oxidor 37.9 1.5E+02 0.0033 25.7 7.0 12 170-181 132-143 (320)
410 PHA03050 glutaredoxin; Provisi 37.9 1.5E+02 0.0033 22.4 6.3 58 117-176 14-76 (108)
411 TIGR02090 LEU1_arch isopropylm 37.8 2.2E+02 0.0048 25.7 8.3 46 129-174 112-158 (363)
412 PRK00170 azoreductase; Reviewe 37.8 2E+02 0.0044 22.6 8.0 33 116-148 2-41 (201)
413 PF00106 adh_short: short chai 37.7 1.6E+02 0.0036 21.6 7.8 65 117-182 26-92 (167)
414 PRK01355 azoreductase; Reviewe 37.7 2.2E+02 0.0048 23.1 8.5 36 116-151 2-43 (199)
415 TIGR01616 nitro_assoc nitrogen 37.6 79 0.0017 24.8 4.8 37 129-165 12-49 (126)
416 PRK10638 glutaredoxin 3; Provi 37.6 64 0.0014 22.4 3.9 44 117-164 3-46 (83)
417 PRK11175 universal stress prot 37.3 1.3E+02 0.0028 25.0 6.3 46 132-180 72-117 (305)
418 PRK06949 short chain dehydroge 37.3 2.1E+02 0.0045 22.7 8.3 41 116-162 9-49 (258)
419 PRK14469 ribosomal RNA large s 37.1 2.1E+02 0.0046 25.6 8.0 56 119-176 257-320 (343)
420 PF01866 Diphthamide_syn: Puta 37.0 68 0.0015 28.3 4.8 56 116-178 210-268 (307)
421 TIGR00114 lumazine-synth 6,7-d 37.0 1.1E+02 0.0024 24.8 5.7 58 117-177 2-66 (138)
422 cd03032 ArsC_Spx Arsenate Redu 36.8 83 0.0018 23.6 4.7 40 126-165 8-48 (115)
423 PRK07523 gluconate 5-dehydroge 36.8 2.2E+02 0.0047 22.8 8.5 40 116-161 10-49 (255)
424 PRK06114 short chain dehydroge 36.6 2.2E+02 0.0049 22.8 7.7 27 114-142 6-32 (254)
425 COG0054 RibH Riboflavin syntha 36.5 1.6E+02 0.0035 24.7 6.7 61 114-177 11-78 (152)
426 TIGR01754 flav_RNR ribonucleot 36.4 1.9E+02 0.0041 22.0 8.7 65 117-181 2-92 (140)
427 cd03035 ArsC_Yffb Arsenate Red 36.3 1.1E+02 0.0023 23.1 5.1 36 129-164 10-46 (105)
428 cd03110 Fer4_NifH_child This p 36.0 2E+02 0.0044 22.1 7.9 58 117-174 118-175 (179)
429 COG1393 ArsC Arsenate reductas 36.0 96 0.0021 24.2 5.0 37 130-166 13-50 (117)
430 cd06366 PBP1_GABAb_receptor Li 35.9 2.6E+02 0.0057 23.4 8.2 65 116-180 136-202 (350)
431 TIGR01108 oadA oxaloacetate de 35.9 2.4E+02 0.0051 27.8 8.6 67 117-184 106-175 (582)
432 TIGR01383 not_thiJ DJ-1 family 35.8 96 0.0021 23.8 5.0 37 117-153 1-37 (179)
433 TIGR03470 HpnH hopanoid biosyn 35.7 2.3E+02 0.005 25.0 7.9 52 123-174 143-195 (318)
434 KOG0725 Reductases with broad 35.7 2.1E+02 0.0046 24.8 7.6 66 115-182 7-101 (270)
435 PRK14171 bifunctional 5,10-met 35.5 62 0.0013 29.3 4.4 47 130-185 171-217 (288)
436 PRK06914 short chain dehydroge 35.5 2.1E+02 0.0045 23.3 7.1 13 170-182 81-93 (280)
437 PRK08594 enoyl-(acyl carrier p 35.5 1.4E+02 0.0031 24.4 6.2 29 115-143 6-34 (257)
438 PF13380 CoA_binding_2: CoA bi 35.5 86 0.0019 23.8 4.6 62 118-179 3-88 (116)
439 TIGR02689 ars_reduc_gluta arse 35.5 67 0.0014 24.4 4.0 58 118-185 29-86 (126)
440 PRK10824 glutaredoxin-4; Provi 35.4 2.2E+02 0.0047 22.3 7.0 57 117-176 16-77 (115)
441 PLN02897 tetrahydrofolate dehy 35.3 57 0.0012 30.4 4.2 35 146-185 238-272 (345)
442 PRK10426 alpha-glucosidase; Pr 35.2 1.4E+02 0.003 29.5 7.0 58 119-177 211-289 (635)
443 PRK14183 bifunctional 5,10-met 35.0 70 0.0015 28.8 4.6 47 130-185 169-215 (281)
444 COG0683 LivK ABC-type branched 35.0 1.3E+02 0.0028 26.4 6.2 110 65-176 95-209 (366)
445 TIGR02764 spore_ybaN_pdaB poly 35.0 1.6E+02 0.0035 23.3 6.3 52 117-172 7-60 (191)
446 PF14871 GHL6: Hypothetical gl 34.9 84 0.0018 24.9 4.6 47 132-178 3-65 (132)
447 cd03030 GRX_SH3BGR Glutaredoxi 34.8 1.1E+02 0.0024 22.8 5.0 43 122-166 10-52 (92)
448 cd07945 DRE_TIM_CMS Leptospira 34.8 2.1E+02 0.0046 25.1 7.5 41 134-174 120-164 (280)
449 PRK07201 short chain dehydroge 34.7 2.7E+02 0.0059 25.9 8.5 44 113-162 368-411 (657)
450 PRK07024 short chain dehydroge 34.5 2.5E+02 0.0053 22.6 7.5 26 156-181 62-89 (257)
451 COG2263 Predicted RNA methylas 34.2 88 0.0019 27.4 5.0 44 123-176 122-166 (198)
452 cd06325 PBP1_ABC_uncharacteriz 34.2 1.6E+02 0.0035 23.3 6.2 107 70-183 79-197 (281)
453 PRK14185 bifunctional 5,10-met 34.0 1.3E+02 0.0028 27.4 6.1 53 116-168 33-86 (293)
454 COG0159 TrpA Tryptophan syntha 33.9 53 0.0012 29.6 3.7 61 113-173 15-95 (265)
455 COG0726 CDA1 Predicted xylanas 33.9 95 0.0021 24.3 4.7 47 117-163 65-114 (267)
456 cd03056 GST_N_4 GST_N family, 33.8 91 0.002 20.1 4.0 24 129-152 10-33 (73)
457 PRK13600 putative ribosomal pr 33.7 81 0.0018 23.7 4.1 29 119-147 32-60 (84)
458 cd03040 GST_N_mPGES2 GST_N fam 33.7 58 0.0012 21.7 3.1 22 129-150 11-32 (77)
459 cd06599 GH31_glycosidase_Aec37 33.6 2.1E+02 0.0046 25.1 7.3 48 128-176 28-92 (317)
460 PRK09526 lacI lac repressor; R 33.5 2.8E+02 0.0061 23.0 8.3 61 115-177 63-127 (342)
461 cd06299 PBP1_LacI_like_13 Liga 33.5 2E+02 0.0043 22.6 6.5 65 116-180 117-185 (265)
462 PLN02616 tetrahydrofolate dehy 33.5 1.4E+02 0.0031 28.1 6.5 53 116-168 105-158 (364)
463 TIGR00442 hisS histidyl-tRNA s 33.4 1.3E+02 0.0027 26.8 5.9 60 115-179 322-381 (397)
464 PRK14457 ribosomal RNA large s 33.3 2.6E+02 0.0055 25.6 8.0 59 117-177 259-326 (345)
465 PF03808 Glyco_tran_WecB: Glyc 33.0 2.1E+02 0.0046 22.9 6.7 60 116-180 49-111 (172)
466 TIGR02666 moaA molybdenum cofa 33.0 2.5E+02 0.0053 24.4 7.6 53 121-173 131-185 (334)
467 cd06314 PBP1_tmGBP Periplasmic 33.0 2.5E+02 0.0055 22.4 7.8 18 126-143 39-56 (271)
468 PF00885 DMRL_synthase: 6,7-di 33.0 1.4E+02 0.003 24.1 5.6 60 116-178 4-70 (144)
469 cd06364 PBP1_CaSR Ligand-bindi 33.0 3E+02 0.0065 25.7 8.5 64 116-179 188-253 (510)
470 cd06603 GH31_GANC_GANAB_alpha 32.9 1.8E+02 0.004 25.7 6.9 51 126-177 21-84 (339)
471 TIGR00627 tfb4 transcription f 32.8 2.5E+02 0.0054 25.3 7.7 52 112-163 143-197 (279)
472 PRK12429 3-hydroxybutyrate deh 32.6 2.5E+02 0.0053 22.1 8.4 12 170-181 81-92 (258)
473 PF02608 Bmp: Basic membrane p 32.5 46 0.00099 28.8 3.0 59 119-178 6-69 (306)
474 cd01311 PDC_hydrolase 2-pyrone 32.3 1.5E+02 0.0032 24.9 5.9 49 127-180 108-156 (263)
475 PRK05653 fabG 3-ketoacyl-(acyl 32.3 2.4E+02 0.0051 21.8 6.9 13 170-182 82-94 (246)
476 cd01965 Nitrogenase_MoFe_beta_ 32.3 1.6E+02 0.0035 26.8 6.5 37 116-157 300-336 (428)
477 TIGR00048 radical SAM enzyme, 32.2 2.3E+02 0.0049 25.9 7.5 57 118-176 263-328 (355)
478 COG4126 Hydantoin racemase [Am 32.1 59 0.0013 29.1 3.6 63 117-182 111-187 (230)
479 cd06309 PBP1_YtfQ_like Peripla 32.0 2.6E+02 0.0057 22.2 8.1 57 119-178 32-88 (273)
480 cd03135 GATase1_DJ-1 Type 1 gl 31.9 1.1E+02 0.0023 23.0 4.5 37 118-156 1-37 (163)
481 PRK05294 carB carbamoyl phosph 31.9 81 0.0018 32.5 5.0 66 114-184 6-96 (1066)
482 PF03618 Kinase-PPPase: Kinase 31.8 2E+02 0.0044 25.6 6.9 51 124-174 5-57 (255)
483 PRK12828 short chain dehydroge 31.8 2.4E+02 0.0052 21.7 7.4 26 116-143 7-32 (239)
484 PRK14178 bifunctional 5,10-met 31.7 73 0.0016 28.6 4.2 45 129-182 163-207 (279)
485 PLN02331 phosphoribosylglycina 31.7 2.1E+02 0.0045 24.3 6.7 81 73-177 2-85 (207)
486 PRK03692 putative UDP-N-acetyl 31.7 2.6E+02 0.0057 24.3 7.5 60 117-180 107-167 (243)
487 PRK14181 bifunctional 5,10-met 31.6 74 0.0016 28.8 4.2 51 130-185 165-215 (287)
488 PRK14454 ribosomal RNA large s 31.3 2.5E+02 0.0054 25.5 7.6 56 119-176 257-321 (342)
489 PRK13601 putative L7Ae-like ri 31.3 1.1E+02 0.0024 22.7 4.4 28 118-145 26-53 (82)
490 TIGR01481 ccpA catabolite cont 31.3 2.4E+02 0.0052 23.3 6.9 65 116-180 177-246 (329)
491 KOG1752 Glutaredoxin and relat 31.2 1.9E+02 0.0042 22.3 6.0 57 121-177 17-75 (104)
492 cd03047 GST_N_2 GST_N family, 31.2 68 0.0015 21.3 3.1 24 130-153 11-34 (73)
493 cd07409 MPP_CD73_N CD73 ecto-5 31.1 1.2E+02 0.0026 26.0 5.3 45 129-177 169-213 (281)
494 cd03768 SR_ResInv Serine Recom 31.1 1.2E+02 0.0026 22.1 4.6 52 123-177 37-91 (126)
495 PRK13210 putative L-xylulose 5 30.9 1.8E+02 0.0038 24.0 6.1 47 128-175 93-151 (284)
496 cd06336 PBP1_ABC_ligand_bindin 30.9 2E+02 0.0044 24.4 6.6 61 115-177 138-200 (347)
497 TIGR00418 thrS threonyl-tRNA s 30.8 2.5E+02 0.0054 26.4 7.7 59 114-177 469-527 (563)
498 PRK14455 ribosomal RNA large s 30.7 2.5E+02 0.0054 25.6 7.5 56 120-177 268-333 (356)
499 PF02219 MTHFR: Methylenetetra 30.6 2.6E+02 0.0055 24.2 7.2 54 128-181 56-109 (287)
500 PF00925 GTP_cyclohydro2: GTP 30.6 87 0.0019 25.4 4.2 38 123-163 120-157 (169)
No 1
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=218.48 Aligned_cols=73 Identities=49% Similarity=0.840 Sum_probs=71.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 188 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGVV 188 (188)
++|+|||||+|||++|++|+++|++|||+||++|+||||||+++.+|+++++++|++||||+||+||||||||
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmv 75 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMV 75 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhh
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=99.94 E-value=1.4e-27 Score=194.60 Aligned_cols=71 Identities=55% Similarity=0.914 Sum_probs=69.7
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 188 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGVV 188 (188)
|+|||||+||+++|+++.++|++|||+||++|+||||+|+++.+|+++++++|++||||+||++|||||||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvv 71 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMV 71 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=99.93 E-value=5e-27 Score=189.57 Aligned_cols=73 Identities=41% Similarity=0.751 Sum_probs=65.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 188 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGVV 188 (188)
|+|+|||||+||+++++++.++|++|||+||++|+||||+|+++.+|+++++++|++|||++||++|||||+|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvv 73 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVV 73 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999975
No 4
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.93 E-value=4.1e-26 Score=212.22 Aligned_cols=110 Identities=45% Similarity=0.707 Sum_probs=93.0
Q ss_pred eeeceeeeeccccccccccccceeecccccceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE
Q 029774 69 SQGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIK 148 (188)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVr 148 (188)
-.|||++++.+..++ .+|.+-.-....... + ......++|+|||||+||+++|++|.++|++|||+|+++
T Consensus 374 kmGhV~~~g~~~~e~-~~~~~~~~~~~~~~~--------~-~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~ 443 (577)
T PLN02948 374 KMGHITVVGPSAAEV-EARLDQLLAEESADP--------D-ALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVT 443 (577)
T ss_pred eeEEEEEecCCHHHH-HHHHHHHHhhhccCC--------C-CCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEE
Confidence 579999999998888 444443332222111 2 233446789999999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029774 149 ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 188 (188)
Q Consensus 149 VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGVV 188 (188)
|+||||+|+++.+|+++++++|++||||+|||+|||||||
T Consensus 444 v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~ 483 (577)
T PLN02948 444 IVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMV 483 (577)
T ss_pred EECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHH
Confidence 9999999999999999999999999999999999999986
No 5
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.28 E-value=3.2e-12 Score=111.68 Aligned_cols=71 Identities=27% Similarity=0.451 Sum_probs=64.5
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCC----eeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFGVP----YEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 188 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefGIp----yDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGVV 188 (188)
...+|+|++.++||+|++++|..+++.+|++ ||++|++.||....+.+... ++.+++|++|||.++||++|
T Consensus 116 ~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPsvv 190 (254)
T COG1691 116 KGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPSVV 190 (254)
T ss_pred cCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHHHH
Confidence 3468999999999999999999999999998 89999999999988777663 46999999999999999975
No 6
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.02 E-value=4.3e-11 Score=109.34 Aligned_cols=103 Identities=20% Similarity=0.094 Sum_probs=93.4
Q ss_pred eeceeeeeccccccccccccceeecccccceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE
Q 029774 70 QGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKI 149 (188)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrV 149 (188)
.||+..|..++.+| ++|.+++.....+ +-.+.++++||+++|.++|..+...++.++++++.-+
T Consensus 179 ~~h~~~I~d~~ie~-gv~~~~~~~~~a~---------------~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~i 242 (373)
T KOG2835|consen 179 AGHNCAISDMKIEF-GVDVTLGEIVLAS---------------DVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLI 242 (373)
T ss_pred cCCccccccchhhh-ccchhhhhhhhhh---------------cccchhheEEcccCCcceeeeeeEEeccccCCccceE
Confidence 57999999999999 8888877654433 3345799999999999999999999999999999999
Q ss_pred EcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029774 150 LSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 188 (188)
Q Consensus 150 aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGVV 188 (188)
.++||+|.....|+..+..+|++++||+||.++|+||+|
T Consensus 243 lv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v 281 (373)
T KOG2835|consen 243 LVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMV 281 (373)
T ss_pred EEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhH
Confidence 999999999999999999999999999999999999975
No 7
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.79 E-value=0.042 Score=48.00 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=58.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|+.+--...++..+.|++.|+.+.+.....+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 89 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKT 89 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchh
Confidence 4799999876655889999999999999887667778888899999999998889999999999875
No 8
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.71 E-value=0.045 Score=48.05 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=56.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||+|..+-....+++.+.|++-|+.+++.+.+.+-+++.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 89 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT 89 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH
Confidence 3688999877655778899999999999877777777778888999998888889999999999874
No 9
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=95.25 E-value=0.081 Score=46.95 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=56.1
Q ss_pred CeEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS--DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S--DlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.||+|..+ .....+++.+.|++.|+++.+. -+.++=+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 47999999877 5678899999999999987542 3456778888999888888889999999999874
No 10
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=95.05 E-value=0.085 Score=46.83 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=52.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|..+= ..+++.+.|++.|+++.+.-....-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 87 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSV 87 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchH
Confidence 479999987653 88899999999999876553445555577888888888889999999999874
No 11
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=94.65 E-value=0.13 Score=45.12 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=55.4
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|..+-. ...+++.+.|++.|+.+.+. -+..|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 92 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSV 92 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 3799999987755 77889999999989876532 2557889999999999998889999999999863
No 12
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.42 E-value=0.2 Score=44.37 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||+|..+--...++..+.|++-|+.+.+.....+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv 96 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT 96 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 4799999876655588889999999999875555677878888888888888888999999999874
No 13
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.37 E-value=0.16 Score=44.65 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=54.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.||+|..+-....+++.+.|++-|+.+.+. ....+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~ 90 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA 90 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 479999998776677888999999999987533 3567777788888888888889999999999864
No 14
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=94.12 E-value=0.34 Score=42.62 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=56.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCChhHHHHHHHHHhhCCC---eEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP---HQNRKGALSYALSAKERGI---KIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSA---HRtP~~l~eyak~ae~~Gv---kVIIAvAGmAA 182 (188)
.++.|+++....-.+.++..+.|+..|+++.+-++.. +.+.+.+.+.++.+.+.++ +++||+-|++.
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv 97 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVV 97 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHH
Confidence 3799999887776789999999999999888777664 7788999999988888777 89999999853
No 15
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=93.99 E-value=0.24 Score=43.35 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=50.8
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH---RtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
++.||++..+--...++..+.|++.|+++.+.+.... .+.+.+.+.++.+++ +.++|||+-|++.
T Consensus 25 ~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~ 92 (348)
T cd08175 25 KALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI 92 (348)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH
Confidence 6889988755444478899999999998876554433 778888888887766 7999999999864
No 16
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=93.96 E-value=0.23 Score=43.82 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=52.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||+|+.+- ..++..+.|++.|+.+.+. -...|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 379999987774 6788889999999765432 3456777888999998888889999999999864
No 17
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=93.86 E-value=0.39 Score=42.01 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=52.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCChhHHHHHHHHHhhCCC---eEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP---HQNRKGALSYALSAKERGI---KIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSA---HRtP~~l~eyak~ae~~Gv---kVIIAvAGmAA 182 (188)
.+|.|++|...--...+++.+.|++.|+++.+.+... +.+.+.+.+.++.+.+.++ +++||+-|++.
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVV 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHH
Confidence 4799999877665678899999999999887666653 4556778888888777665 89999999863
No 18
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=93.85 E-value=0.21 Score=44.41 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=54.7
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.||+|..+- ....+++.+.|++.|+.+.+. -+..|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 92 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSP 92 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 379999987654 347899999999999987543 3567888888999999998889999999999864
No 19
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=93.85 E-value=0.21 Score=44.65 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred CeEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS--DLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S--DlpimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|..+ .....+++.+.|++.|+.+.+.- ..++-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 37999998664 25567899999999999765432 346668888999999898889999999999874
No 20
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.76 E-value=0.36 Score=42.73 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=54.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.++.||++..+.-...++..+.|++.| .+.+. ...|.+.+.+.+.++.+.+.+.+++||+-|++
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGs 98 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGK 98 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCch
Confidence 379999999887667788889999888 77654 56799999999999888888899999999975
No 21
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=93.69 E-value=0.2 Score=44.53 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=53.7
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|..... ...+++.+.|++.|+++.+.- +.+|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 97 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSP 97 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 3688888866544 678999999999999764431 345888888999998888889999999999864
No 22
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=93.60 E-value=0.2 Score=44.59 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=52.5
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD--lpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||+|..+- ....++..+.|++.|+.+.+. -+.+|-+.+.+.+.++.+++.++++||++-|++.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 479999986554 356789999999999865432 2346667788888888888889999999999874
No 23
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=93.56 E-value=0.2 Score=43.98 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=55.1
Q ss_pred eEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLP--VMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlp--imekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
+|.||+|. +-.. .+++..+.|++-|+++.+.- +..|=+.+.+.+.++.+++.++++|||+-|++.
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV 90 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 89999998 4333 68999999999999985555 789999999999999999999999999999864
No 24
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=93.44 E-value=0.25 Score=44.39 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=52.5
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.||+|.. .+....+++.+.|++.|+.+.+. -+.++-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4789998754 23457889999999999876532 2446777788999998888889999999999864
No 25
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=93.16 E-value=0.28 Score=43.38 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=53.8
Q ss_pred CeEEEEeccCC-C-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS-D-LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S-D-lpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|..+ . ....+++.+.|++.|+.+.+. -+..+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 47999998766 3 346788999999999976543 2446788888899999888999999999999875
No 26
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=93.07 E-value=0.3 Score=43.55 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=52.8
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|..... ...++..+.|++.|+++.+. -+-++-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 3799999865433 37889999999999976543 1346777788999998888889999999999874
No 27
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=93.03 E-value=0.36 Score=42.70 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=52.3
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~S-DlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
++.|++|... +....+++.+.|++-|+++.+. -+..|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 26 ~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 26 RPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 6888887543 3447899999999999976543 2457777788899998888889999999999874
No 28
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=92.99 E-value=0.66 Score=41.12 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=54.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCC---eEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGI---KIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaS---AHRtP~~l~eyak~ae~~Gv---kVIIAvAGmAA 182 (188)
.++.|+++....-...+++.+.|++.|+++.+.+.+ ++.+-+.+.+.++.+.+.++ +++||+-|++.
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 479999998776678999999999999998866554 36667888888888777666 99999999853
No 29
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=92.68 E-value=0.27 Score=43.65 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=53.3
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|+.- +....++....|++.|+.+.+. -+-.|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~ 95 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSS 95 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 47888888642 4567889999999999976432 2347888889999999998889999999999874
No 30
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=92.67 E-value=0.43 Score=42.53 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=50.2
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|.... ....+++.+.|++.|+++.+.- +.++-+.+.+.+.++.++..++++|||+-|++.
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 379999986542 2467889999999999765421 234556667888888888889999999999864
No 31
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=92.66 E-value=0.72 Score=40.41 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=52.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|...-....+++.+.|++.| .+.+.+ ..+=+.+.+.+.++.+++.+.+++||+-|++.
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~ 90 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRV 90 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchH
Confidence 368999988776678889999999999 776654 35557788888888888888999999999864
No 32
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=92.65 E-value=0.43 Score=42.42 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=53.5
Q ss_pred CeEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS--DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S--DlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||+|..+ .....++..+.|++.|+++.+. =+..|-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 37899998654 3467789999999999976432 1345888888999999998889999999999874
No 33
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=92.61 E-value=0.37 Score=43.06 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=51.5
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|.. .+....+++.+.|++.|+.+.+. =.-++-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 3788888754 34458899999999999976543 1235666688888888888889999999999864
No 34
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=92.60 E-value=0.78 Score=41.28 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=53.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCCe---EEEEecCcc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGIK---IIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaS---AHRtP~~l~eyak~ae~~Gvk---VIIAvAGmA 181 (188)
.+|.|++++.-.....++..+.|++.|+++++.+.. .+.+.+.+.+.++.+.+.+++ ++||+-|++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGs 95 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGV 95 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcH
Confidence 378999987655457888999999999998777765 466778888888888888898 999999975
No 35
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=92.47 E-value=0.48 Score=42.13 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=51.9
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|.... ....+++.+.|++.|+++.+. -+-+|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~ 95 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSV 95 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 379999986543 236788999999999976432 2345777788888888888889999999999874
No 36
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=92.23 E-value=0.33 Score=43.95 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=50.4
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMES-DSDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS-~SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
++.|++|. -.+....+++.+.|++-||.+.+. -+.++=+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 56666543 234566899999999999987654 3345556688899998898999999999999875
No 37
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=92.04 E-value=0.85 Score=39.26 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=51.8
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
++.||+|...--...++..+.|++. +.+.+.. ...+-+-+.+.+.++.+++.+.++|||+-|++.
T Consensus 25 ~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 90 (332)
T cd07766 25 RALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGST 90 (332)
T ss_pred eEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchH
Confidence 6889988765447888999999987 7665443 456778888889988888888999999999864
No 38
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=91.84 E-value=0.76 Score=41.77 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=52.8
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|... .....+++.+.|++.|+++.+. -+..+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 37888887643 2336789999999999987643 2446778888999998888999999999999874
No 39
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=91.42 E-value=0.58 Score=42.12 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=52.5
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|.. .+....+++.+.|++.|+.+.+. =+.++=+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 3788898853 34678889999999999975321 2345667788899998898999999999999874
No 40
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=91.14 E-value=0.61 Score=39.49 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=48.2
Q ss_pred eEEEEeccCCC--HHHHHHHHHHHHHhCCCe---eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSD--LPVMNDAARTLSDFGVPY---EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SD--lpimekA~~vLeefGIpy---DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
+|+|+-=-..| .++.+...+.|++.|+.- ++.+-.+++.++.+.+++++..+.++++||++...++
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa 71 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA 71 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH
Confidence 46666555554 567888889999999975 8888999999999999999888889999999876543
No 41
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=90.87 E-value=1.6 Score=39.28 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=53.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCC----eEEEEecCcc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGI----KIIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaS---AHRtP~~l~eyak~ae~~Gv----kVIIAvAGmA 181 (188)
.++.||++....--..++..+.|+..|+++..-+.. .+.+.+.+.+..+.+.+.++ +++||+-|++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~ 99 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGV 99 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcH
Confidence 478999987665446788999999999988766666 47888999998888877777 9999999974
No 42
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=90.50 E-value=1.3 Score=39.05 Aligned_cols=66 Identities=5% Similarity=-0.056 Sum_probs=49.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC--ChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ--NRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHR--tP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.||+++..-....+++.+.|++-|+.+++....... +-+.+.+.++.+.+ +.+++||+-|++.
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv 92 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTI 92 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHH
Confidence 369999997775556789999999999877653323333 55777787777766 8999999999853
No 43
>PRK15138 aldehyde reductase; Provisional
Probab=90.39 E-value=0.66 Score=41.88 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=48.0
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD--lpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|..|- ....+++.+.|+ |+.+.+. -+.+|=+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSV 97 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 479999986552 345677888886 6644332 2346677788999998888889999999999864
No 44
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=89.82 E-value=0.39 Score=40.30 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=37.8
Q ss_pred CCCeEEEEeccCCCHHHH-----HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 114 DTPIVGIIMESDSDLPVM-----NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpim-----ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+.+|+|++|+.|+.... +.+.+.|++.|+.+++ +-.. +.+.+.+ +..++++++...
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~--i~~~---~~~~~~~---~~~~~D~v~~~~ 64 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP--IDPG---EDIAAQL---KELGFDRVFNAL 64 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE--EecC---cchHHHh---ccCCCCEEEEec
Confidence 445799999999987655 8999999999987544 3222 1223333 234577777553
No 45
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=89.36 E-value=1.7 Score=38.95 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=48.2
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCC---ChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQ---NRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHR---tP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.|++|...- ....+++.+.|++-|+++.+ .+-.. ..+.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 91 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSC 91 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 479999986554 47889999999999997643 44333 4444566666677788999999999874
No 46
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=89.25 E-value=1.7 Score=36.29 Aligned_cols=63 Identities=6% Similarity=0.013 Sum_probs=44.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh-CCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeef-GIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
+|++++|..+|+-.+......|++. ++++.+-+.+-|..+..-..+.+..-..++++.+...|
T Consensus 1 ~i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~ 64 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGS 64 (363)
T ss_pred CEEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCC
Confidence 4888899999998888888888876 78888888888888776544443222233455554444
No 47
>PRK13055 putative lipid kinase; Reviewed
Probab=88.88 E-value=2.4 Score=37.23 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=41.9
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIM----GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
++.||. |+.......+++...|++.|++|++....-+ +....++++.+..++++++|++.|
T Consensus 4 r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vvv~GG 68 (334)
T PRK13055 4 RARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLIIAAGG 68 (334)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEEEECC
Confidence 555543 5655567778889999999987776655433 455666776666677888776544
No 48
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=88.82 E-value=1.7 Score=37.14 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhH-----------HHHHHHHHhhCCCeEEEE
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKG-----------ALSYALSAKERGIKIIIV 176 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~-----------l~eyak~ae~~GvkVIIA 176 (188)
.+|++.+++..+.|.+.|||+-+-|+..|..|.. +.++++.++++|..|++=
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 5899999999999999999999999999988776 334556777888887753
No 49
>PRK11914 diacylglycerol kinase; Reviewed
Probab=88.62 E-value=4 Score=34.92 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=44.0
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIM----GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
++.||. |+.......+++.+.|++.|+++++.. ..+ +....++++++..++++++|++-|
T Consensus 10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~--t~~-~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIV--GTD-AHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEE--eCC-HHHHHHHHHHHHhcCCCEEEEECC
Confidence 566654 666667788889999999998766543 333 788999998887788888775544
No 50
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.54 E-value=2.8 Score=30.10 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=38.2
Q ss_pred eEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCC-CeEEEE
Q 029774 117 IVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIIIV 176 (188)
Q Consensus 117 kVaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~G-vkVIIA 176 (188)
.|.|+|-|.+|. |.+.++.+.|+++|++|+..=+..+ ++...++.+...... +.|||-
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEEC
Confidence 588888876655 4788999999999999988777655 443333333222222 356653
No 51
>PLN02834 3-dehydroquinate synthase
Probab=88.12 E-value=2.9 Score=38.90 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=52.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE--EEEc---CCCChhHHHHHHHHHhhCCCe---EEEEecCcc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEI--KILS---PHQNRKGALSYALSAKERGIK---IIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDV--rVaS---AHRtP~~l~eyak~ae~~Gvk---VIIAvAGmA 181 (188)
.+|.||++..-.-...+++.+.|+.-|+++.+ .+.. .+.+.+.+.+.++.+.+.+++ ++||+-|++
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGs 174 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGV 174 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChH
Confidence 47999998876666888999999999987765 4444 467788888888888777777 999999974
No 52
>PRK00861 putative lipid kinase; Reviewed
Probab=87.99 E-value=3.1 Score=35.53 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=40.3
Q ss_pred CeEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIM----GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.++.||. |+.+.....+++...|++ +++|++.+.... ....++++++..++++++|++-|
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv~~GG 66 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELIIASGG 66 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEEEECC
Confidence 3555553 555555667788888887 578888776654 45567777776677888776544
No 53
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=87.90 E-value=1.9 Score=37.70 Aligned_cols=66 Identities=15% Similarity=0.026 Sum_probs=47.7
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||+|..-. ....+++.+.|++- +++.+- -+..+.+.+.+.+.++.+++.++++||++-|++.
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 90 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSA 90 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 478888875432 23667778888766 654322 2346777888888888888889999999999874
No 54
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=87.71 E-value=2.8 Score=35.83 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=39.9
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
+.|+=|..+......++.+.|++-|++|++. ..+.+....++++++..++++++|++-|
T Consensus 3 ~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~---~t~~~~~a~~~a~~~~~~~~d~vv~~GG 61 (293)
T TIGR03702 3 LLILNGKQADNEDVREAVGDLRDEGIQLHVR---VTWEKGDAQRYVAEALALGVSTVIAGGG 61 (293)
T ss_pred EEEEeCCccchhHHHHHHHHHHHCCCeEEEE---EecCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 3444454445556778888899999988777 3334666777887776777887775443
No 55
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=87.56 E-value=1.5 Score=38.54 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=48.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
++.|++|...--...+++.+.|++.++. .+.-+..|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 25 ~~livt~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 89 (337)
T cd08177 25 RALVLTTPSLATKLAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGST 89 (337)
T ss_pred eEEEEcChHHHHHHHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 6899998765444777888888876432 1222346777788888888888889999999999874
No 56
>PRK13337 putative lipid kinase; Reviewed
Probab=87.33 E-value=3.1 Score=35.76 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=41.4
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIM----GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
++.||. |+........++...|++.|++|++.... .+.+..++++++..++++++|++-|
T Consensus 3 r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~vvv~GG 66 (304)
T PRK13337 3 RARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDLVIAAGG 66 (304)
T ss_pred eEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCEEEEEcC
Confidence 455543 44444556677788899999988877665 3567777787776777887775544
No 57
>PRK13054 lipid kinase; Reviewed
Probab=87.06 E-value=3.3 Score=35.55 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 115 TPIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 115 ~pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
++++.||.=..+ -.....++...|++-|++|++.. .+.++...++++++..++++++|++-|
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~---t~~~~~a~~~a~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRV---TWEKGDAARYVEEALALGVATVIAGGG 65 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEE---ecCCCcHHHHHHHHHHcCCCEEEEECC
Confidence 345555553333 34567777888999999877733 334666778887777778888775544
No 58
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=86.10 E-value=5.2 Score=29.52 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=38.0
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCC-CeEEEE
Q 029774 116 PIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIIIV 176 (188)
Q Consensus 116 pkVaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~G-vkVIIA 176 (188)
.+|.|.|-+++|+ |.+.+|.+.|+++||+|+..=+ ...|+...++.+...... +.|||.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di--~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV--LEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC--CCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3699999877555 6778999999999999875433 344554444333222222 467765
No 59
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=84.92 E-value=10 Score=29.95 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=48.3
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 118 VGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 118 VaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
|+||+.+.+|- ...+.+.+.++++|+.+++. ..+.-.++...+.++++-.++++.||....-..
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~ 67 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD 67 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH
Confidence 67888888874 34566777888888865554 678888988888998888888998887654443
No 60
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=84.55 E-value=7.1 Score=29.14 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=43.2
Q ss_pred EEEEeccC-C---CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESD-S---DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~-S---DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+++..+. + -....+.+.+.++++|..+++.+......|+...+.++....++++.+|....
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 66666433 1 12334555566778677778888888888888888887777778888877654
No 61
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=84.37 E-value=12 Score=30.67 Aligned_cols=63 Identities=14% Similarity=0.341 Sum_probs=46.2
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
...|+++..+.+| ..+.+.+.+.++++|+. +-+...+..|++..++++.+..++++.+|..+.
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~--~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYN--LVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCe--EEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3479999987665 34456677888889854 445667788888888888877778887776654
No 62
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=84.08 E-value=6.8 Score=33.09 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=38.0
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIM----GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
++.||. |+.......+++.+.|++.|+++++.... ++ ....++++.+.+.+++++|++-|
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~ivv~GG 66 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVIAGGG 66 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEEEECC
Confidence 566664 55555677888999999999987764432 22 22334455454556787776544
No 63
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=83.97 E-value=5.4 Score=37.07 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=54.8
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|+++.. .....++++.+.|++-||+|.+.- ...+-+-+.+.+-++.+++.+++.|||+-|+|.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~ 98 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSV 98 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4788998876 567799999999999998776543 346666777777888888999999999999985
No 64
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=83.65 E-value=8.4 Score=26.25 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=42.8
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.|.|+.-+..+.+.+.+....|..-|+.+++-.. .+.+.+-.+++ +..|+..+|-+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~a---~~~g~~~~iiig~ 60 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIREA---QLQKIPYILVVGD 60 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHH---HHcCCCEEEEECc
Confidence 5778887888899999999999999987776442 46666666665 4678776665553
No 65
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=83.59 E-value=2.6 Score=37.05 Aligned_cols=65 Identities=17% Similarity=-0.001 Sum_probs=46.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.||++..+-....++..+.|++.++.+ .+.+-=-+-+.+.+.++.+++.+++++||+-|++.
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~--~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~ 88 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFV--LRYDGECSEENIERLAAQAKENGADVIIGIGGGKV 88 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEE--EEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 378999987664455666666676566643 23331177788888888888889999999999864
No 66
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=83.53 E-value=4 Score=37.71 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=54.7
Q ss_pred EEE--EeccCCCHHHHHHHHHHHHHhCC-CeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 118 VGI--IMESDSDLPVMNDAARTLSDFGV-PYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 118 VaI--IMGS~SDlpimekA~~vLeefGI-pyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
|+| +.--.+=.+..+-..+.|+++|. ..++.+-+||=++..+.++++....++.+|+|++++-+
T Consensus 33 VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~ 99 (322)
T COG2984 33 VAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPA 99 (322)
T ss_pred EEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHH
Confidence 554 34455556778899999999999 78999999999999999999999889999999999844
No 67
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=83.08 E-value=6.7 Score=27.78 Aligned_cols=53 Identities=32% Similarity=0.411 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
...+++.+.+++.|++.+..+...+...+.+.+++ ++.+++++|.+......+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCc
Confidence 45566777777889998888876665445555544 466789999988776654
No 68
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.08 E-value=12 Score=29.83 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=32.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|++++...+| ....+.+.+.+++.|. ++.+......++.-.++++.+...+++.||..+
T Consensus 2 igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 2 IGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred eeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5666655444 1223445555666663 445555555666666666666666666665543
No 69
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=83.08 E-value=12 Score=29.38 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=43.0
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+|++...++ ....+.+.+.+++.| |.+.+...+..|+...++++...+.+++.+|....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENG--YQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677755444 245666667778887 45666677888988888888887888888887643
No 70
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=82.37 E-value=4.2 Score=40.49 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=50.1
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHH--HhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLS--DFGVPYEIKILS---PHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLe--efGIpyDVrVaS---AHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.+|.||+|... +....+++.+.|+ ..|+. +.+.+ +|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~--~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVE--YEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCe--EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 47999987543 3347888999998 66664 44554 5777788999998888889999999999864
No 71
>PRK10586 putative oxidoreductase; Provisional
Probab=82.12 E-value=4.8 Score=36.33 Aligned_cols=63 Identities=10% Similarity=-0.016 Sum_probs=48.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
++.||+|..+-........+.|++-|+.+ .+.+-+-+.+.+.++.+..+ .+++++|++-|+++
T Consensus 36 ~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~ 98 (362)
T PRK10586 36 RAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGAL 98 (362)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHH
Confidence 68899998876666677788899988754 45666667777888776654 57899999999864
No 72
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=82.12 E-value=13 Score=29.34 Aligned_cols=61 Identities=10% Similarity=0.136 Sum_probs=37.9
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
+|+++..+.+| ....+.+.+.++++|+.+. +...=..|+...++++..-..+++.+|..++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLR--VYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 36777766555 2345566677777776444 3444446666666776665667777777654
No 73
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=82.07 E-value=14 Score=29.14 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=33.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|+|++-+.+| ..+.+.+.+.++++| |.+-+.+....+++..++++...+++++.+|..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 62 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHG--YTLLVASSGYDLDREYAQARKLLERGVDGLALI 62 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 5566544333 233455666677776 344455666667766666666666666666654
No 74
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=82.03 E-value=8.9 Score=34.24 Aligned_cols=64 Identities=17% Similarity=0.050 Sum_probs=49.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEc---CCCChhHHHHHHHHHhhCC---CeEEEEecCcc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILS---PHQNRKGALSYALSAKERG---IKIIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLee-fGIpyDVrVaS---AHRtP~~l~eyak~ae~~G---vkVIIAvAGmA 181 (188)
.++.|++++.-.-...++..+.|+. .++. +.+.+ .+.+.+.+.+..+.+.+.| .+++||+-|++
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~--~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGs 94 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVH--ILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGA 94 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCce--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcH
Confidence 4789999887666788999999987 6664 44555 4777888888877776555 79999999975
No 75
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=81.91 E-value=13 Score=30.97 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=42.2
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 117 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 117 kVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
+|+||..+.+| ..+.+.+.+.++++|..|++.+...+..|+.-.++++.+...+++-||..+
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 36667665444 233456666777766667777778888888777888777777787766654
No 76
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=81.86 E-value=14 Score=31.00 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=46.5
Q ss_pred CeEEEEeccC--CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESD--SDLPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~--SDlpimekA~~vLeefGIpyDVrVaS-AHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.+|.|+.||. .|-.-+.++.+.|++-||..++--.+ .+-++++++.|++...+++-.-||.+
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~ 172 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSV 172 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEe
Confidence 4788888887 44456778999999999987666555 89999999999988854333334444
No 77
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=81.66 E-value=5.7 Score=30.48 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=40.9
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+.+ .-+++...+.++++||.+++...+..-+.+++.+.++...+
T Consensus 32 Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 32 LAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp EEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred EEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56677786655 55688889999999999999999999999999999987754
No 78
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.41 E-value=16 Score=29.10 Aligned_cols=60 Identities=8% Similarity=0.182 Sum_probs=31.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|+++....+| ..+.+.+.+.++++|..|++.+......+++..++++.+.+.+++-+|..
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~ 64 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLN 64 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4555544333 12334445555565555666555555566655566555555555555543
No 79
>PRK08862 short chain dehydrogenase; Provisional
Probab=81.39 E-value=13 Score=30.33 Aligned_cols=27 Identities=0% Similarity=-0.075 Sum_probs=16.9
Q ss_pred CChhHHHHHHHHHhh--C-CCeEEEEecCc
Q 029774 154 QNRKGALSYALSAKE--R-GIKIIIVGDGV 180 (188)
Q Consensus 154 RtP~~l~eyak~ae~--~-GvkVIIAvAGm 180 (188)
..++.+.++++...+ . .++++|..||.
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 64 FSQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 356666666655433 2 47888888864
No 80
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=81.34 E-value=7.2 Score=35.09 Aligned_cols=63 Identities=11% Similarity=-0.077 Sum_probs=44.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhC---CCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKER---GIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~---GvkVIIAvAGmAA 182 (188)
++.|+++ .+-+. ++..+.|+.-|+++.+.- +.++=+.+.+.+.++.+++. ++++|||+-|+|.
T Consensus 27 ~~lvvtd-~~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~ 93 (347)
T cd08184 27 PAVFFVD-DVFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGST 93 (347)
T ss_pred eEEEEEC-cchhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence 4666674 33333 677788888899876542 34555666678888777766 8999999999864
No 81
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=81.33 E-value=9.9 Score=32.13 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=47.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC---------------------ChhHHHHHHHHHhhCCCeEE
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ---------------------NRKGALSYALSAKERGIKII 174 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHR---------------------tP~~l~eyak~ae~~GvkVI 174 (188)
-++.+|-|-..|.+.+++.++.+.++++. .+.++..|+ +++.+.++.+-+++.|.++.
T Consensus 132 iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 132 PRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 35788889877889999999999999876 788899887 24455566666777899998
Q ss_pred E
Q 029774 175 I 175 (188)
Q Consensus 175 I 175 (188)
|
T Consensus 211 i 211 (213)
T PRK10076 211 V 211 (213)
T ss_pred e
Confidence 7
No 82
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=81.33 E-value=5.3 Score=35.17 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=46.1
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.|-...-...+++.+.|++.|..+.+++.... ....++++++...+++.+||+.|
T Consensus 13 sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 13 SGKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred ccccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEEecC
Confidence 34344566788999999999999999998876 88999999988889999999877
No 83
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=80.89 E-value=21 Score=27.28 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=42.3
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
|+++.-..++ ..+.+.+.+.++++|+ ++.+.-.+-.++...+.++.+.+.+++.+|..+...
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5666643211 3445566677788875 666777777888888888777777899888866543
No 84
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=79.93 E-value=19 Score=27.14 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=38.0
Q ss_pred eEEEEeccCC-C---HHHHHHHHHHHHHhCCCeeEEEEcCCC---------------ChhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDS-D---LPVMNDAARTLSDFGVPYEIKILSPHQ---------------NRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~S-D---lpimekA~~vLeefGIpyDVrVaSAHR---------------tP~~l~eyak~ae~~GvkVIIAv 177 (188)
+|.||.||.. + ...++.+.+.|++.| +++.++..+- .++.+.++.+...+ ++.+|-+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~ 77 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFA 77 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEe
Confidence 7999999984 3 344666666676675 5777777665 35677777777666 4455443
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=79.71 E-value=10 Score=31.08 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCC---ChhHHHHHHHHHhhCCCeEEE
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQ---NRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHR---tP~~l~eyak~ae~~GvkVII 175 (188)
+++.+.++.+.+++.|+++.+.+..+.| +|+.+.++++.+.+-|++.|.
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 6888999999999999999999988885 788899999998888876544
No 86
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=8.5 Score=27.56 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=40.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHh-hCCC-eEEE
Q 029774 124 SDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK-ERGI-KIII 175 (188)
Q Consensus 124 S~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae-~~Gv-kVII 175 (188)
+.++=|.+++|.+.|++.|++|+...+..|-. .+..++++... .+.+ .|||
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEE
Confidence 45668999999999999999999999988876 77778887663 3333 5555
No 87
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=79.49 E-value=20 Score=28.02 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=34.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+++..+.+| ....+.+.+.++++| |++.+......++...++++.+.+.+++-+|..+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHG--YQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNP 63 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcC--CEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeC
Confidence 5556655444 445566667777776 3444555555566666666666666666555543
No 88
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.12 E-value=23 Score=27.96 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=41.1
Q ss_pred EEEEeccCC---CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDS---DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~S---DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+|+.-+.+ .....+.+.+.++++| |++.+......++...++++....++++.+|..+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 566664433 3455667777788876 56777777888877777787777777887776554
No 89
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=78.93 E-value=12 Score=31.75 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=49.1
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
+.-+.||.+.++++.+..++.|....+.+.-++|. |+.+.++++.+.+-|++. |..+-..+
T Consensus 104 i~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~-i~l~DT~G 165 (263)
T cd07943 104 VATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADC-VYVTDSAG 165 (263)
T ss_pred EEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCE-EEEcCCCC
Confidence 34488999999999999999999888888667765 888889999888888885 45555444
No 90
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=78.34 E-value=25 Score=29.36 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=46.7
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
..|+++..+.+| ..+.+.+.+.++++| |++.+...+..+++..++++.+.+++++-||..++
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 468888865444 234567777888888 67778888889998889888888888988876654
No 91
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=78.24 E-value=21 Score=27.98 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=38.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+++..+.+| ..+.+.+.+.+++.|. ++.+...+..|+...++++...+.+++.+|..+
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMG 63 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeC
Confidence 5666654333 3345566677777764 555666778888877877776666787777653
No 92
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=77.86 E-value=10 Score=33.12 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=39.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhC-CCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER-GIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~-GvkVIIAvAGmAA 182 (188)
.++.||+|... .+++.+.|++.++ .++.+.. ..+-..+.+..+.++.. +.++|||+-|++.
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv 87 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKV 87 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 37999998776 7788888888777 3444432 23333334444333333 5899999999753
No 93
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.68 E-value=23 Score=28.14 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=38.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+++....+| ....+.+.+.+++.| |++-+...+..++...++++.....+++-+|..+
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAG--LRVILCNTDEDPEKEAMYLELMEEERVTGVIFAP 63 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5666654443 334566667777887 5566667777887777777777777777666644
No 94
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=77.61 E-value=19 Score=25.90 Aligned_cols=61 Identities=26% Similarity=0.171 Sum_probs=50.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCC---------------------eeEEEEcCCCChhHHHHHHHHHhhCCCeEEE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVP---------------------YEIKILSPHQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIp---------------------yDVrVaSAHRtP~~l~eyak~ae~~GvkVII 175 (188)
+-.++.|.-+.+..++.+...|.++|.. --+-++|......++.+.++.++++|.+| |
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v-i 84 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPV-I 84 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEE-E
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeE-E
Confidence 3567889999999999999999887763 23778888999999999999999999888 4
Q ss_pred Eec
Q 029774 176 VGD 178 (188)
Q Consensus 176 AvA 178 (188)
++.
T Consensus 85 ~iT 87 (131)
T PF01380_consen 85 LIT 87 (131)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 95
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=77.50 E-value=17 Score=24.01 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.|.|+.-+..+.+.+.+...-|.+-|+..++.... +.+++..+ .++..|+..+|.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~~~~---~a~~~~~~~~i~i 58 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKKQFK---YADRSGARFAVIL 58 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHHHHH---HHHHcCCCEEEEE
Confidence 57888888888888999999999999977665433 34444444 4456677654444
No 96
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.33 E-value=20 Score=28.73 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=27.6
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHH
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 164 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak 164 (188)
+.++++|+|+.+ .+...+++.|-+.|. +|+-..|+++.+.++.+
T Consensus 8 ~~k~vlVtGas~--gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 8 HGKRALITGAST--GIGKRVALAYVEAGA----QVAIAARHLDALEKLAD 51 (253)
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHH
Confidence 456888888877 456667777776664 23444566665555443
No 97
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=76.68 E-value=20 Score=28.09 Aligned_cols=58 Identities=19% Similarity=0.449 Sum_probs=30.1
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|++|..+.+| ..+.+.+.+.++++| |++.+......|++..++++.+..++++.+|..
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~ 62 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELG--YELTVLDAQNDAAKQLNDIEDLITRGVDAIIIN 62 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcC--ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4555554444 334455556666665 344444444556555556655555556554443
No 98
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=76.57 E-value=29 Score=28.85 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=46.1
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
..|+++..+.+| ..+.+.+.+.+++.| |.+-+...+..++...++++.+.+.+++-||....
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEAQG--RMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 468998876544 344566777888888 56677777888888888888887888888887654
No 99
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.56 E-value=25 Score=27.90 Aligned_cols=58 Identities=9% Similarity=0.201 Sum_probs=38.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|+++..+.++ ..+.+.+.+.++++|. ++.+......++...++++.+.+.+++-+|..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~ 62 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFV 62 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 6667654333 3466777778888874 55555444567777777777777778777765
No 100
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=76.44 E-value=25 Score=27.63 Aligned_cols=58 Identities=14% Similarity=0.350 Sum_probs=40.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|++++-+.++ ..+.+.+.+.++++| |++.+...+..++...+.++.....+++-+|..
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~ 62 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHG--YKVVLLQTNYDKEKELEYLELLKTKQVDGLILC 62 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcC--CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5666655443 445677788888887 456666678888888888877777778766654
No 101
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=76.43 E-value=25 Score=28.81 Aligned_cols=60 Identities=10% Similarity=0.320 Sum_probs=39.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+|+....+| ..+.+.+.+.++++|. ++.+......|++..+.++.+...+++.||..+.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 6677765555 2334566666777764 5556666667777777777776777877776653
No 102
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=76.12 E-value=6 Score=31.64 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=39.8
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
+|.|+=-|. ...+..+..|.+-| ..|...|+....+.++++. +|++|++.|...-+
T Consensus 30 ~v~VvGrs~---~vG~pla~lL~~~g----atV~~~~~~t~~l~~~v~~-----ADIVvsAtg~~~~i 85 (140)
T cd05212 30 KVLVVGRSG---IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVHD-----ADVVVVGSPKPEKV 85 (140)
T ss_pred EEEEECCCc---hHHHHHHHHHHHCC----CEEEEeCCCCcCHHHHHhh-----CCEEEEecCCCCcc
Confidence 466664443 46777888887655 5677778777778777753 79999999987433
No 103
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=75.34 E-value=29 Score=27.68 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=28.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHh-CCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeef-GIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|+++.++.+| ..+.+.+.+.+++. | |++.+......++.-.++++.+-.++++.||..
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 63 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPD--VELIIADAADDNSKQVADIENFIRQGVDLLIIS 63 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 5555555554 12334444444543 3 334444444555555555555555555555544
No 104
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.31 E-value=28 Score=27.80 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=14.7
Q ss_pred CeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 144 PYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 144 pyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
.|++.+..+...++...++++.+...+++.||.
T Consensus 34 g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii 66 (274)
T cd06311 34 DVEFILVTASNDTEQQNAQQDLLINRKIDALVI 66 (274)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344444444444444444444444444444443
No 105
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=75.23 E-value=29 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=13.3
Q ss_pred CCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 142 GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 142 GIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
|..+++.+....=.++...+.++.+..++++.||.
T Consensus 32 g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi 66 (272)
T cd06300 32 GLISEFIVTSADGDVAQQIADIRNLIAQGVDAIII 66 (272)
T ss_pred CCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 43333333333333333334443333334444443
No 106
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=74.64 E-value=30 Score=27.24 Aligned_cols=59 Identities=12% Similarity=0.253 Sum_probs=40.0
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+|+..+.+| ..+.+.+.+.++++| |.+.+......|++..++++....++++.+|...
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQG--YNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMC 63 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcC--CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEec
Confidence 6777765433 233456667778887 4556666777888888888777777787666644
No 107
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.31 E-value=30 Score=27.43 Aligned_cols=58 Identities=16% Similarity=0.327 Sum_probs=37.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|++|+-+.++ ..+.+.+.+.++++| |++-+......++.-.++++.....+++-+|..
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 62 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYG--YTVLLCNTYRGGVSEADYVEDLLARGVRGVVFI 62 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5566644333 234556777777777 455566677777777777777777777766654
No 108
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=74.20 E-value=31 Score=27.45 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=38.0
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+|++.+.+| ..+.+.+.+.++++|+ ++-+..+-..++.-.+.++.....+++-+|..++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGY--SLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 5666654443 3456667777777774 4445555667776677776676777777776543
No 109
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=74.10 E-value=17 Score=34.18 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=34.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHH
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALS 165 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ 165 (188)
+|+|+ ||+- .+...+.+++.++.=.|++..++||++.+++.+.+++
T Consensus 3 ~VaIL-GsTG--SIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~ 48 (385)
T PRK05447 3 RITIL-GSTG--SIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQARE 48 (385)
T ss_pred eEEEE-cCCh--HHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHH
Confidence 45554 6543 4667788888877667899999999999998888754
No 110
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=74.05 E-value=24 Score=28.38 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 134 AARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 134 A~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
+.+.++++|. ++.+.... .+++..+.++.+...+++.+|.
T Consensus 21 i~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii 60 (289)
T cd01540 21 AKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVI 60 (289)
T ss_pred HHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 3444444442 33333333 3444444444444444444433
No 111
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=74.03 E-value=16 Score=33.50 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=45.9
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEE--EE------cCCCChhHHHHHHHHHhhCCCe---EEEEecCcc
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIK--IL------SPHQNRKGALSYALSAKERGIK---IIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVr--Va------SAHRtP~~l~eyak~ae~~Gvk---VIIAvAGmA 181 (188)
.++.||+++.-. .+..++..+.|++-|+++.+. +. .++-.|+.+.+..+.+.+.+++ ++||+-|++
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 468999865443 245678888888888876432 21 2333346677777777777776 999999986
Q ss_pred C
Q 029774 182 A 182 (188)
Q Consensus 182 A 182 (188)
.
T Consensus 123 v 123 (389)
T PRK06203 123 V 123 (389)
T ss_pred H
Confidence 3
No 112
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=73.77 E-value=25 Score=23.73 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCC-CeEEE
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIII 175 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~G-vkVII 175 (188)
.=+.+++|...|++.||+|+..=+.- .|+...++.+-..... +.|||
T Consensus 10 ~C~~C~ka~~~L~~~gi~~~~~di~~--~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 10 GCEDCTAVRLFLREKGLPYVEINIDI--FPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred CChhHHHHHHHHHHCCCceEEEECCC--CHHHHHHHHHHhCCCCcCEEEE
Confidence 34889999999999999998776653 3454455544332222 35554
No 113
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=73.76 E-value=23 Score=28.03 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=36.2
Q ss_pred eEEEEeccCCC----HHHHHHHHHHHH-HhCCCeeEEEEcCCC-------------ChhHHHHHHHHHhhCCCeEEEEec
Q 029774 117 IVGIIMESDSD----LPVMNDAARTLS-DFGVPYEIKILSPHQ-------------NRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 117 kVaIIMGS~SD----lpimekA~~vLe-efGIpyDVrVaSAHR-------------tP~~l~eyak~ae~~GvkVIIAvA 178 (188)
+|.+|.||.+. ...++.+.+.+. +.|.+ +.++..+. .|+.+.++.+..++ ++.||-+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~e--v~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~t 76 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGIS--PRTIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVGS 76 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCe--EEEEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEEC
Confidence 58999999976 556667777664 45654 33333222 36777778777665 45555543
No 114
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.27 E-value=38 Score=26.50 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=38.1
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+++....+| ..+.+.+.+.++++|. .+.+......+++..++++.+.+.+++.+|..+.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGY--TVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5666643333 2344566667778874 4555565667777777777777777877776654
No 115
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.86 E-value=26 Score=31.57 Aligned_cols=59 Identities=8% Similarity=0.020 Sum_probs=48.8
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
|.-+.+|.+..++..+..++.|....+.+.-+|+. |+.+.++++.+++-|++.| .++-.
T Consensus 107 i~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i-~i~DT 166 (337)
T PRK08195 107 VATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV-YVVDS 166 (337)
T ss_pred EEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE-EeCCC
Confidence 33478899999999999999999999999999987 6888999999888888764 44433
No 116
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.21 E-value=29 Score=27.52 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=29.1
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcC--CCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSP--HQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSA--HRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
||+||....+| ..+++.+.+.+++.|. .+.+... ...+++..++++.....+++-+|..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~ 64 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILLA 64 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 35666544333 2223444455556553 3444332 4566666666655555556555543
No 117
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=72.18 E-value=23 Score=23.19 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=41.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCe------------eEEEEcCCCChhHHHHHHHHHh-hCCCeEEE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPY------------EIKILSPHQNRKGALSYALSAK-ERGIKIII 175 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpy------------DVrVaSAHRtP~~l~eyak~ae-~~GvkVII 175 (188)
.-.|.+||-++.+-+++...-|+..|.+. -|.+ +...+.++..+..+... ..+.+.+|
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~-G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRV-GPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEE-CCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEE-CCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 46788999999999999999999988762 3333 57788888888888777 66777666
No 118
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.79 E-value=39 Score=27.53 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=38.4
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 117 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 117 kVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
+|+++..+.++ ..+.+.+.+.++++| |.+-+......+++..++++.+...+++-||...
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~ 64 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGG 64 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46777665444 234556666677776 4566666666777777777777777777666653
No 119
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.78 E-value=44 Score=26.39 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=40.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+|+.-+.+| ..+.+.+.+.+++.| |.+-+...+-.+++..++++...+++++-+|....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSG--YSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5666644333 234556667778887 56666666778888888888887878877776643
No 120
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.69 E-value=12 Score=33.60 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHh
Q 029774 113 NDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK 167 (188)
Q Consensus 113 ~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae 167 (188)
+..++|+||+|+.| .+..+++..|-.-| .+|+=++|++++.++.++...
T Consensus 32 ~~~~~~~vVTGans--GIG~eta~~La~~G----a~Vv~~~R~~~~~~~~~~~i~ 80 (314)
T KOG1208|consen 32 DLSGKVALVTGATS--GIGFETARELALRG----AHVVLACRNEERGEEAKEQIQ 80 (314)
T ss_pred cCCCcEEEEECCCC--chHHHHHHHHHhCC----CEEEEEeCCHHHHHHHHHHHH
Confidence 34458999999999 89999999999999 467778899877777665544
No 121
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=71.62 E-value=22 Score=29.48 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=41.1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC-------------ChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ-------------NRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHR-------------tP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.+.|.|.+|+...- ++.+.|+++. .+.+.|.+.+. +.+.+.+++.. .+++|+-+|-.
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~-----ad~vIs~~G~~ 261 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAA-----ADLVISKGGYT 261 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHHh-----CCEEEECCCHH
Confidence 45788888887655 6677888876 67888887775 23455555542 69999999965
No 122
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=71.36 E-value=37 Score=28.10 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=34.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEE-cCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVa-SAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+++..+.+| ..+.+.+.+.++++|+ ++.+. .....++...++++.+.+.+++-+|..+
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 5666655555 2334556666667664 44443 3445666666777666566676666654
No 123
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=71.19 E-value=35 Score=27.21 Aligned_cols=60 Identities=18% Similarity=0.342 Sum_probs=26.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|+||.-+.+| ...++.+.+.+++.|....+........++.-.+.++.+..++++.+|..
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 64 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFS 64 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 4555544333 11233444555555543222222233455555555555545555555443
No 124
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=70.71 E-value=13 Score=25.74 Aligned_cols=57 Identities=19% Similarity=0.037 Sum_probs=37.3
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 117 IVGIIMESD---SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 117 kVaIIMGS~---SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.|+|+.-+. .+.+.+.+.+..|...|+..++-.- .+.+.+-. +.++..|+..+|.+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~l~k~i---~~a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NERPGVKF---ADADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCCcccch---hHHHhcCCCEEEEEC
Confidence 588888776 4667788888888888887766432 34444444 444567887655554
No 125
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=70.07 E-value=43 Score=26.59 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=34.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+||.-+.+| ..+.+.+.+.++++|+.. .+...+..++.-.++++.+..++++.||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~--~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHL--IITAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEE--EEEeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 4555544433 244556666677777543 3444455566666677666666777777654
No 126
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.57 E-value=40 Score=26.82 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=33.8
Q ss_pred EEEEecc---CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMES---DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS---~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+|+... .......+.+.+.++++|. ++-+......+++..+.++.+.+.+++-+|...+
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGY--SLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4455432 2334445566666777664 4444455556666666666666666666665443
No 127
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=69.50 E-value=24 Score=31.92 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=47.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCC---eEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGI---KIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaS---AHRtP~~l~eyak~ae~~Gv---kVIIAvAGmAA 182 (188)
.++.||+...-.-...+...+.|+ ++ ++.+.+ .+.+.+.+.+..+.+.+.|+ +++||+-|++.
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv 88 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGII 88 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHH
Confidence 468888887654447777777776 33 445555 58999999999988888888 89999999863
No 128
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=69.37 E-value=51 Score=25.51 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=34.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|++|.-..+| ..+.+.+.+.+++.|+ ++.+......|+...++++.+...+++.+|...
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~ 63 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISP 63 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5666643222 2345555566666654 455555556777777777666666677776654
No 129
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=69.12 E-value=24 Score=33.25 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=43.6
Q ss_pred eEEEE----eccCCCHHHHH-HHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGII----MESDSDLPVMN-DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaII----MGS~SDlpime-kA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
++.|| .|..+...+.+ ++...|++.|++|++.+.- .+....++++++...+++.||++-|
T Consensus 113 r~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~---~~ghA~~la~~~~~~~~D~VV~vGG 177 (481)
T PLN02958 113 RLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK---YQLHAKEVVRTMDLSKYDGIVCVSG 177 (481)
T ss_pred EEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc---CccHHHHHHHHhhhcCCCEEEEEcC
Confidence 56666 47667677765 5777999999988877554 3467778888776677888887655
No 130
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=69.08 E-value=24 Score=30.24 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=18.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILSPH 153 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLee-fGIpyDVrVaSAH 153 (188)
+|+|++|...|+-.+......|++ -++++.+-+.+-|
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h 39 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQH 39 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 355555555555555555555543 2444444444444
No 131
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=68.92 E-value=22 Score=24.81 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=37.0
Q ss_pred EEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESD---SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~---SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|+|+.=+. +-.+.+.+....|...|+..++.- -++++.+-.+++ ...|+..+|.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a---~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKYA---DKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHH---HHTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHH---hhcCCeEEEEE
Confidence 66777666 567788999999999997655544 556665554444 45676555544
No 132
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=68.84 E-value=50 Score=25.85 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=37.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|++|.-+.+| ..+.+.+.+.++++| |++.+......+++..++++.+...+++-+|..+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAG--YQLLLGNTGYSPEREEELLRTLLSRRPAGLILTG 63 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcC--CEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeC
Confidence 4555543332 334456667777777 4566666677777777777777666777776654
No 133
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=68.83 E-value=20 Score=31.94 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=43.0
Q ss_pred CCCeEEEEeccCC-----CHH----HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeE
Q 029774 114 DTPIVGIIMESDS-----DLP----VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKI 173 (188)
Q Consensus 114 ~~pkVaIIMGS~S-----Dlp----imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkV 173 (188)
..+.|+|+.|++| |.+ .+++....++..| ..+.|..-.|||+++.+.+++.-+....+
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~ 211 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGV 211 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCce
Confidence 3578999999987 333 4556666666777 47999999999999999987665433344
No 134
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=68.11 E-value=31 Score=31.11 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEE
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 174 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVI 174 (188)
|-|.+ +.+|.+.+++..+..+++|......+.-+|+. |+++.++++.+++-|++.|
T Consensus 104 iri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 104 VRVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred EEEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 44433 78888999999999999999888888889987 5788889988888888765
No 135
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=67.96 E-value=15 Score=32.63 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=45.1
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEE---cCCCChhHHHHHHHHHhhCC--CeEEEEecCccC
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERG--IKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVa---SAHRtP~~l~eyak~ae~~G--vkVIIAvAGmAA 182 (188)
.+|.|++|... +....++..+.|++. ++.+. -+|-+.+.+.+.++.+++.+ +++|||+-|+|.
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~----~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSv 92 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR----LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSV 92 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC----cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 47999997643 245677777777643 23333 35777788888887777666 999999999875
No 136
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.61 E-value=55 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=18.0
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
++.++.+|+|+.+ .+...++..|-+.|.
T Consensus 5 ~~~~~vlItGasg--~iG~~la~~l~~~G~ 32 (262)
T PRK13394 5 LNGKTAVVTGAAS--GIGKEIALELARAGA 32 (262)
T ss_pred CCCCEEEEECCCC--hHHHHHHHHHHHCCC
Confidence 4456788888887 455556666655554
No 137
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=67.38 E-value=18 Score=33.65 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=56.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.++.|++|-..---..++..+.|+..|. ...-+..-+=+-+++++..+.+...+.+++|++-|+..
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~ 96 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKT 96 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHH
Confidence 4699999999988889999999999998 56667778888999999998887678999999999753
No 138
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=67.17 E-value=34 Score=29.61 Aligned_cols=51 Identities=6% Similarity=0.033 Sum_probs=43.9
Q ss_pred cCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEE
Q 029774 124 SDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 174 (188)
Q Consensus 124 S~SDlpimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVI 174 (188)
..+|++.+.++.+..++.|....+.+..++|. |+.+.++++.+.+-|++.|
T Consensus 104 ~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i 155 (266)
T cd07944 104 HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVF 155 (266)
T ss_pred ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEE
Confidence 66799999999999999999888888888887 5888889988888788754
No 139
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=67.07 E-value=21 Score=23.20 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCC-eEEE
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIII 175 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~Gv-kVII 175 (188)
..=|.++++.+.|++.|++|+..=++-+. +...++.+.....++ .|||
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEE
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEE
Confidence 55688999999999999999887777763 555555544333343 5554
No 140
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=66.94 E-value=38 Score=25.01 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCeEEEEeccCCCHHHH--HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 115 TPIVGIIMESDSDLPVM--NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpim--ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
+.+|.+++|+--=-..+ +++.+.|++.|+++++.=.+. ..+..++ +++++||+..-..
T Consensus 2 k~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~-----~~~D~iv~t~~~~ 61 (94)
T PRK10310 2 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV----NEIETYM-----DGVHLICTTARVD 61 (94)
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH----HHHhhhc-----CCCCEEEECCccc
Confidence 34799999987654544 889999999999988664443 3344333 3478888776443
No 141
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=66.67 E-value=59 Score=26.80 Aligned_cols=62 Identities=8% Similarity=0.210 Sum_probs=44.7
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
...|++++...+| ..+.+.+.+.+++.| |++.+......+++..++++...+.+++-+|...
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 120 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFERG--YSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC 120 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3479998865443 345667778888888 5666666677888887888777777888777654
No 142
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=66.56 E-value=60 Score=25.34 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHhhCCCeEEE
Q 029774 156 RKGALSYALSAKERGIKIII 175 (188)
Q Consensus 156 P~~l~eyak~ae~~GvkVII 175 (188)
++...+.++.+..++++.+|
T Consensus 41 ~~~~~~~~~~l~~~~vdgii 60 (266)
T cd06282 41 AEREADAVETLLRQRVDGLI 60 (266)
T ss_pred HHHHHHHHHHHHhcCCCEEE
Confidence 33333333333333344443
No 143
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=66.35 E-value=11 Score=32.83 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=43.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE-cCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVa-SAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.++.||+|...--...++..+.|+..|+++.+-.. ..+=+-+.+.++.+.++..+++++|++-|+.
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~ 86 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGT 86 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcH
Confidence 37999999998777788999999999998763221 1222455566667666667899999998864
No 144
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=66.33 E-value=30 Score=31.21 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=41.2
Q ss_pred CCeEEEEe-ccCC------CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 115 TPIVGIIM-ESDS------DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 115 ~pkVaIIM-GS~S------DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
+++|+||+ |+.- |.. ..-....|+++|+......+-+| .++.+.+.++.+.++|++++|.-.|++.
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsv 231 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKF-GPVLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASV 231 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 46899886 6521 221 22345568889986544444444 3455666666665567999999988764
No 145
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=66.22 E-value=44 Score=27.64 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCC--CChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPH--QNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAH--RtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
+++++-+.+| ..+.+.+.+.+++.|. ++.+.+.. ..+++..++++.+.+++++-+|..+
T Consensus 2 igvvvp~~~n~f~~~~~~gi~~~a~~~g~--~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 2 LCALYPHLKDSYWLSINYGMVEQAKHLGV--ELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred eeEEecCCCcHHHHHHHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4555544444 2233444555555554 34444332 3455555666666666666555543
No 146
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=65.80 E-value=38 Score=22.70 Aligned_cols=32 Identities=28% Similarity=0.163 Sum_probs=25.1
Q ss_pred CeeEEEEcCCCChhHHHHHHHHHhhCCCeEEE
Q 029774 144 PYEIKILSPHQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 144 pyDVrVaSAHRtP~~l~eyak~ae~~GvkVII 175 (188)
.--+-++|..+..+++.+.++.++++|.+++.
T Consensus 48 ~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 48 GDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34567788888888899999999888887543
No 147
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.62 E-value=57 Score=25.77 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
+.+.+.+++.|+ ++.+......+++-.+.++.+.+++++.+|.
T Consensus 19 ~~i~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii 61 (267)
T cd06322 19 NAMKEEAKKQKV--NLIVSIANQDLNKQLSDVEDFITKKVDAIVL 61 (267)
T ss_pred HHHHHHHHhcCC--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344444444443 2333333334444444444444444544444
No 148
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.62 E-value=65 Score=25.38 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
+.+...+++.|+ ++.+......+++..++++.+..++++.+|..
T Consensus 20 ~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 63 (275)
T cd06317 20 KAFQAAAEEDGV--EVIVLDANGDVARQAAQVEDLIAQKVDGIILW 63 (275)
T ss_pred HHHHHHHHhcCC--EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 344444555553 33344444455555555554444455555443
No 149
>PRK12361 hypothetical protein; Provisional
Probab=65.45 E-value=27 Score=32.78 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=39.2
Q ss_pred CeEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIM----GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.++.||. |+.......+++.+.|++. +++++..... ++...++++++.+++++++|++-|
T Consensus 243 ~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~---~~~a~~la~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 243 KRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTP---EISAEALAKQARKAGADIVIACGG 306 (547)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECCC---CccHHHHHHHHHhcCCCEEEEECC
Confidence 3566654 6655667888999899884 5555444432 345677787777777888776544
No 150
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=65.38 E-value=29 Score=23.61 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=36.6
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 117 IVGIIMESD---SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 117 kVaIIMGS~---SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.|.|+.-+. .+++.+.+...-|...|+..++.. -.+.+++-.++ ++..|+..+|-+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~--~~~~~~k~~~~---a~~~g~~~~iiig 62 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD--RERKIGKKFRE---ADLRGVPFAVVVG 62 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC--CCcCHhHHHHH---HHhCCCCEEEEEC
Confidence 477776666 677888888888998898655533 23555555444 4566766554443
No 151
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.29 E-value=37 Score=29.34 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=47.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE--cCCCC-hhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL--SPHQN-RKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVa--SAHRt-P~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.+.-|.-..||++.++++.+..++.|....+.+. .+.|. |+.+.++++.+.+-|++.| ..+-..
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i-~l~DT~ 172 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI-CIKDMA 172 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE-EEcCCC
Confidence 3444566889999999999999999987666553 34554 7888999999988888764 444433
No 152
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=65.23 E-value=64 Score=25.35 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 131 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 131 mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
.+.+.+.++++|+ ++.+...-..++...++++...+.+++-+|.
T Consensus 18 ~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 61 (265)
T cd06299 18 ATAIQDAASAAGY--STIIGNSDENPETENRYLDNLLSQRVDGIIV 61 (265)
T ss_pred HHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444455555553 3334443444555555555555555554444
No 153
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=64.69 E-value=45 Score=24.98 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCeEEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 115 TPIVGIIMES--DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 115 ~pkVaIIMGS--~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
...|.|+.-+ ..+.+.+.+....|...|+..++..- +.+++-.+++ +..|+..+|-+.
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~sl~kqlk~A---~k~g~~~~iiiG 85 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---GSIGRRYARQ---DEIGTPFCVTVD 85 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---CCHHHHHHHh---HhcCCCEEEEEC
Confidence 3457777766 56677788888888888988777542 5555555444 567776555443
No 154
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=64.66 E-value=27 Score=30.19 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec-CccCcCcCC
Q 029774 131 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD-GVEAHLSGT 187 (188)
Q Consensus 131 mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA-GmAAHLPGV 187 (188)
.+++.+.-+..|.+.|+.. .||+.++...+.+..++.|++.+.+.. -.+..+||.
T Consensus 20 p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L 75 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGL 75 (178)
T ss_pred hHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCC
Confidence 4667777788888776654 799999999999999999998766653 224577774
No 155
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=63.97 E-value=21 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCCh-------hHHHHHHHHHhhCCCeEEEE
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQNR-------KGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHRtP-------~~l~eyak~ae~~GvkVIIA 176 (188)
|.+.+++..+.|++ ..|+-|++.|=.. +...++++...+.|+++||+
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEc
Confidence 56667777777776 4799999999643 33456777766678999984
No 156
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=63.92 E-value=69 Score=25.25 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=39.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+|++-+.++ ..+.+.+.+.++++|. ++.+...-..++.-.++++.+.+.+++.+|...
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGY--KLILCNSDNDPEKEREYLEMLRQNQVDGIIAGT 63 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCC--eEEEecCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 6777765444 3445667778888885 455555555677777888777777888777754
No 157
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=63.84 E-value=73 Score=26.34 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=41.6
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
...|++++...+| ..+.+.+.+.+++.|. ++-+...+..++...++++.....+++-+|...
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 125 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGY--QLLIACSDDQPDNEMRCAEHLLQRQVDALIVST 125 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3468888865444 2234566667777774 555666677787777777777777788777654
No 158
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.80 E-value=66 Score=27.92 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
..++.+|+|..+ -+...+++.|-+-|. .+.++ -|+++.+.++.
T Consensus 7 ~~k~vlITGas~--gIG~~la~~la~~G~--~Vvl~--~R~~~~l~~~~ 49 (334)
T PRK07109 7 GRQVVVITGASA--GVGRATARAFARRGA--KVVLL--ARGEEGLEALA 49 (334)
T ss_pred CCCEEEEECCCC--HHHHHHHHHHHHCCC--EEEEE--ECCHHHHHHHH
Confidence 345777777766 445555566655553 33222 35555544443
No 159
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=63.63 E-value=63 Score=26.24 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=33.1
Q ss_pred EEEEeccCCCHH----HHHHHHHHHHHhCCCeeEEEEcCCC--ChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSDLP----VMNDAARTLSDFGVPYEIKILSPHQ--NRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SDlp----imekA~~vLeefGIpyDVrVaSAHR--tP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+||.-..++-+ ..+.+.+.|+++|..+.+.....+. .++.-.++++.+.+++++.+|...
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~ 68 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTL 68 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 566665432112 2345556667777554444333322 456666666666666777777654
No 160
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=63.42 E-value=40 Score=22.23 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhC-CC-eEEEE
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER-GI-KIIIV 176 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~-Gv-kVIIA 176 (188)
.++=|.+.+|...|++.||+|+..-+. ..|+...++.+..... ++ .|||.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHhCCCCccCEEEEC
Confidence 345599999999999999999876554 4477767666543332 33 45543
No 161
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.29 E-value=12 Score=33.58 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.1
Q ss_pred eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 146 EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 146 DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
...|...|...+.+.++.++ ++++|+++|.+.-+.
T Consensus 183 ~atVt~chs~T~~l~~~~~~-----ADIvIsAvGk~~~i~ 217 (284)
T PRK14177 183 NATVTLCHSKTQNLPSIVRQ-----ADIIVGAVGKPEFIK 217 (284)
T ss_pred CCEEEEeCCCCCCHHHHHhh-----CCEEEEeCCCcCccC
Confidence 36777889777778888764 699999999987553
No 162
>PRK06940 short chain dehydrogenase; Provisional
Probab=63.05 E-value=39 Score=28.04 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=10.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHH
Q 029774 117 IVGIIMESDSDLPVMNDAARTL 138 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vL 138 (188)
+++||+|+ | -+...+++.|
T Consensus 3 k~~lItGa-~--gIG~~la~~l 21 (275)
T PRK06940 3 EVVVVIGA-G--GIGQAIARRV 21 (275)
T ss_pred CEEEEECC-C--hHHHHHHHHH
Confidence 56666665 4 4555555555
No 163
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=62.70 E-value=89 Score=25.92 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=43.6
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
..|++++...+| ..+.+.+.+.+++.|. .+-+......+++..++++....++++-+|...
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 124 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKVVIENLLARQVDALIVAS 124 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 468988865444 3456667777788774 666667777888888888777777888777654
No 164
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=62.64 E-value=20 Score=30.90 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=40.0
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaS---AHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.+|+||.-++. ....++...+.+++.|+...+.|.. .-+....+...++..++.+.++||..+.
T Consensus 155 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~ 222 (377)
T cd06379 155 NKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSAS 222 (377)
T ss_pred eEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcC
Confidence 47888865432 2235778888999999844223322 2233345566666677778899987554
No 165
>PRK07063 short chain dehydrogenase; Provisional
Probab=62.55 E-value=79 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=25.3
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
++++++|+|+.+ -+...+++.|-+-|. +|+-..|+++.+.+..
T Consensus 6 ~~k~vlVtGas~--gIG~~~a~~l~~~G~----~vv~~~r~~~~~~~~~ 48 (260)
T PRK07063 6 AGKVALVTGAAQ--GIGAAIARAFAREGA----AVALADLDAALAERAA 48 (260)
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHH
Confidence 356788888876 445666666666664 2333455555554443
No 166
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=62.46 E-value=79 Score=26.58 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=44.7
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
...|+++..+-+| ..+.+.+.+.+++.|. .+-+...+..+++-.++++.+..++++-+|..+.
T Consensus 59 ~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 59 TETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK 124 (343)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3469988876544 2345677778888884 5666677778887778887777778887776643
No 167
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=62.39 E-value=14 Score=32.33 Aligned_cols=61 Identities=8% Similarity=0.111 Sum_probs=42.0
Q ss_pred CeEEEEeccCCCH-----HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIMESDSDL-----PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIMGS~SDl-----pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.+|+||. +.+|+ ..++...+.|++.|+........ ...+....+.++..++.+ +|||..+.
T Consensus 138 ~~vaiiy-~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~-~~~~~d~~~~l~~ik~~~-rvii~~~~ 203 (387)
T cd06386 138 RSALLVY-EDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFD-ETKDLDLDEIIRAIQASE-RVVIMCAG 203 (387)
T ss_pred eEEEEEE-EcCCCCccceehHHHHHHHHHhcCceEEEEecC-CCCcccHHHHHHHHHhcC-cEEEEecC
Confidence 4789886 34442 23777788899999877654332 233457778888887777 88888754
No 168
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=62.21 E-value=18 Score=34.89 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=46.4
Q ss_pred CeEEEEec-cCCCHHHHHHHHHHHHHhCCCeeEEEE-cCCCChhHHHHHHHHHhhCCCeEEEEecCccCc
Q 029774 116 PIVGIIME-SDSDLPVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVGDGVEAH 183 (188)
Q Consensus 116 pkVaIIMG-S~SDlpimekA~~vLeefGIpyDVrVa-SAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAH 183 (188)
+++.+++- .-+-++-.+.+.+.|++-||+|++.=- -.--+-.-+-+=++.++++.++.||++-|+|+|
T Consensus 71 Kk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 71 KKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred cceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 35777663 345677789999999999999865311 012222333444455567789999999999987
No 169
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=62.03 E-value=63 Score=27.23 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=37.9
Q ss_pred EEEeccCCCHHHHH---H-HHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 119 GIIMESDSDLPVMN---D-AARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 119 aIIMGS~SDlpime---k-A~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.++.|+..|...-+ + +.+.-+++|+++++.-.. ..++...+-++.+.++|+++||+..
T Consensus 4 ~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~--~~~~~~~~~i~~~~~~g~dlIi~~g 65 (258)
T cd06353 4 FVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV--PEGADAERVLRELAAQGYDLIFGTS 65 (258)
T ss_pred EEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC--CchHhHHHHHHHHHHcCCCEEEECc
Confidence 34557788854433 3 333335688876554332 2688888888888888999999843
No 170
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.94 E-value=63 Score=26.87 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=15.5
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefG 142 (188)
+++++++|+|..+-+ ....++.|-+-|
T Consensus 4 ~~~k~vlVTGas~gI--G~ala~~La~~G 30 (275)
T PRK05876 4 FPGRGAVITGGASGI--GLATGTEFARRG 30 (275)
T ss_pred cCCCEEEEeCCCchH--HHHHHHHHHHCC
Confidence 345677777777643 444555555545
No 171
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.74 E-value=14 Score=33.51 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.+..+..|.+-|......|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 173 VGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~-----ADIvVsAvGkp~~i~ 223 (297)
T PRK14168 173 VGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQR-----ADILIVAAGVPNLVK 223 (297)
T ss_pred ccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhh-----CCEEEEecCCcCccC
Confidence 344444444433211125677789877788888864 699999999987654
No 172
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=61.65 E-value=27 Score=24.85 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKI 173 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkV 173 (188)
+..+++=-+-.......+..+|+++|++..+.|++-+ .++-.+.++.+.+.|.+|
T Consensus 6 ~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G~ei 60 (123)
T PF01522_consen 6 KSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAGHEI 60 (123)
T ss_dssp SEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT-EE
T ss_pred CEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHHHHH
Confidence 4555555555577889999999999999999999875 555566777777778443
No 173
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=61.29 E-value=67 Score=26.17 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=33.6
Q ss_pred eEEEEeccC--CCH----HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESD--SDL----PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~--SDl----pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
+|++++-+. .|- .+.+.+.+.++++|+ ++.+.... .++...++++...+++++-||..
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy--~~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~ 64 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGI--EYKYVESK-SDADYEPNLEQLADAGYDLIVGV 64 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCC--eEEEEecC-CHHHHHHHHHHHHhCCCCEEEEc
Confidence 366666431 232 334555667777775 44444444 45666667766667777777765
No 174
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=61.05 E-value=37 Score=31.05 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=42.1
Q ss_pred CeEEEEeccCC---CHH------HHHHHHHHHHHhCCCeeEEEEcCC-CChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDS---DLP------VMNDAARTLSDFGVPYEIKILSPH-QNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~S---Dlp------imekA~~vLeefGIpyDVrVaSAH-RtP~~l~eyak~ae~~GvkVIIAv 177 (188)
++|+++.||.. ..+ ..+++.+.|++.++ ++.....= .++++..+.++.+++.+++.+|..
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 70 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIVW 70 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEEc
Confidence 47999999988 333 44555666666644 55544433 488999999988888788888864
No 175
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=60.96 E-value=73 Score=24.39 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=39.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
|+++.-+.++ ..+.+.+.+.++++|+ ++.+......|++..+.++.+.+++++.+|....-..
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~ 67 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGY--SVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLD 67 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcc
Confidence 4555544322 2334566666777775 4555666677777777787777778888887765543
No 176
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=60.81 E-value=13 Score=30.53 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=37.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCcC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSG 186 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLPG 186 (188)
+-++|.|... .+-++.+..|.+-| ..|...|...+.+.++.+ .+|++|+++|..+-+++
T Consensus 37 k~v~VvGrs~--~VG~Pla~lL~~~~----atVt~~h~~T~~l~~~~~-----~ADIVVsa~G~~~~i~~ 95 (160)
T PF02882_consen 37 KKVVVVGRSN--IVGKPLAMLLLNKG----ATVTICHSKTKNLQEITR-----RADIVVSAVGKPNLIKA 95 (160)
T ss_dssp -EEEEE-TTT--TTHHHHHHHHHHTT-----EEEEE-TTSSSHHHHHT-----TSSEEEE-SSSTT-B-G
T ss_pred CEEEEECCcC--CCChHHHHHHHhCC----CeEEeccCCCCcccceee-----eccEEeeeecccccccc
Confidence 3444444432 35667777777764 567778988888888885 37999999999887764
No 177
>PRK09739 hypothetical protein; Provisional
Probab=60.77 E-value=69 Score=25.83 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=37.6
Q ss_pred CeEEEEeccCCC----HHHHHHHHHHHHHhCCCeeEEEEcCCC---------------------ChhHHHHHHHHHhhCC
Q 029774 116 PIVGIIMESDSD----LPVMNDAARTLSDFGVPYEIKILSPHQ---------------------NRKGALSYALSAKERG 170 (188)
Q Consensus 116 pkVaIIMGS~SD----lpimekA~~vLeefGIpyDVrVaSAHR---------------------tP~~l~eyak~ae~~G 170 (188)
.+|.||.||... ...++...+.|++-|. ++.+...+. .++.+.++++...+
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~--~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 79 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGH--QVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLE-- 79 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHh--
Confidence 479999999865 4467777788887774 444443222 24566777776655
Q ss_pred CeEEEEec
Q 029774 171 IKIIIVGD 178 (188)
Q Consensus 171 vkVIIAvA 178 (188)
++.||-+.
T Consensus 80 AD~iV~~~ 87 (199)
T PRK09739 80 HDALVFVF 87 (199)
T ss_pred CCEEEEEC
Confidence 55655543
No 178
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=60.70 E-value=91 Score=25.98 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=42.8
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
..|+++....+| ..+.+.+.+.+++.| |++-+......++.-.++++.....+++-+|..
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~ 126 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDAHG--YQTMLAHYGYKPEMEQERLESMLSWNIDGLILT 126 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHHCC--CEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 468988865554 345667778888888 566666667777777777777777788887764
No 179
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.29 E-value=31 Score=30.99 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=43.0
Q ss_pred eEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+.|-. +++...+.++++||.+++.-.++.-+.+++.+.++...+
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 35 LAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5667778776544 567778999999999999999999999999999987744
No 180
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.12 E-value=79 Score=25.27 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHhCC
Q 029774 127 DLPVMNDAARTLSDFGV 143 (188)
Q Consensus 127 DlpimekA~~vLeefGI 143 (188)
|.....+..+.|...++
T Consensus 42 ~~~~~~~~i~~l~~~~v 58 (271)
T cd06312 42 DVADMARLIEAAIAAKP 58 (271)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 55444455555544444
No 181
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.03 E-value=14 Score=33.32 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=27.7
Q ss_pred EEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 147 IKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 147 VrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
..|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 185 aTVt~chs~T~~l~~~~~~-----ADIvVsAvGkp~~i~ 218 (294)
T PRK14187 185 CTVTTVHSATRDLADYCSK-----ADILVAAVGIPNFVK 218 (294)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 5788889888888888864 699999999987654
No 182
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=59.98 E-value=88 Score=25.00 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=24.9
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
.+++++|+|..+ .+...++..|-+-|. +|+...|+++++.+..
T Consensus 8 ~~k~~lItGas~--giG~~ia~~L~~~G~----~vvl~~r~~~~~~~~~ 50 (254)
T PRK08085 8 AGKNILITGSAQ--GIGFLLATGLAEYGA----EIIINDITAERAELAV 50 (254)
T ss_pred CCCEEEEECCCC--hHHHHHHHHHHHcCC----EEEEEcCCHHHHHHHH
Confidence 356788888877 455566666665563 2333455555544443
No 183
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.41 E-value=30 Score=29.58 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=21.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL 150 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVa 150 (188)
+.|.|.+|+.--.....++.+.|.++.-++.+.|+
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv 205 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLV 205 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEE
Confidence 46877777443334567888888776544444433
No 184
>PRK09701 D-allose transporter subunit; Provisional
Probab=59.21 E-value=90 Score=26.24 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 114 DTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 114 ~~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
+...|+++....+| ..+.+.+.+.+++.|+...+.....-..++...++++....++++.||..+.
T Consensus 23 ~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 23 AAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33468888766655 2334556666677775443321112234455566666666667776666543
No 185
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=58.95 E-value=34 Score=29.67 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-------CCCChhHHHHHHHHHhhCCCeEEEEecCccCc
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILS-------PHQNRKGALSYALSAKERGIKIIIVGDGVEAH 183 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaS-------AHRtP~~l~eyak~ae~~GvkVIIAvAGmAAH 183 (188)
++.+..+++.+.|+++|....+.=.- +.-.-++..++.+...+..++.|+++-|+-++
T Consensus 11 ~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 11 DEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred CcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 34489999999999998853322111 22234667777777778889999999998543
No 186
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=58.77 E-value=59 Score=23.83 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 131 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 131 mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
++++.+.++.-|++++..+.--- .| ...+++.+++.+++.||.++-+-..|
T Consensus 67 l~~~~~~~~~~~~~~~~~~~~g~-~~--~~~I~~~a~~~~~dlIV~Gs~g~~~l 117 (146)
T cd01989 67 LLPYRCFCSRKGVQCEDVVLEDD-DV--AKAIVEYVADHGITKLVMGASSDNHF 117 (146)
T ss_pred HHHHHHHHhhcCCeEEEEEEeCC-cH--HHHHHHHHHHcCCCEEEEeccCCCce
Confidence 34445555556777776665311 22 33455556666788887776554443
No 187
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=58.75 E-value=90 Score=24.69 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=30.4
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 118 VGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 118 VaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|++++.+.+|. ...+.+.+.+++.|. ++.+......++...++++...+.+++.+|..+.
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGY--QLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45555543331 122333344555553 4444444555666666666655666666665543
No 188
>PRK13057 putative lipid kinase; Reviewed
Probab=58.60 E-value=41 Score=28.64 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
...+++...|++.|++|++... +.++...++++.. .++++++|++-|
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~iiv~GG 59 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVIVGGG 59 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEEEECc
Confidence 4567888999999998666544 4567777777653 456787776544
No 189
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=58.43 E-value=42 Score=29.31 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=41.6
Q ss_pred EEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEcC----CC----C-hhHHHHHHHHHhhCCCeEEEEecCccCc
Q 029774 118 VGIIMES--DSDLPVMNDAARTLSDFGVPYEIKILSP----HQ----N-RKGALSYALSAKERGIKIIIVGDGVEAH 183 (188)
Q Consensus 118 VaIIMGS--~SDlpimekA~~vLeefGIpyDVrVaSA----HR----t-P~~l~eyak~ae~~GvkVIIAvAGmAAH 183 (188)
|+||.=| ..|.+..+++.+.|+++|... .+-.- |. + -+++.++.+..++..++.|+++-|+-+.
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v--~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~ 75 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKV--VVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGA 75 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEE--EE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-G
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEE--EECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccH
Confidence 5666655 568899999999999999754 33321 11 1 2456667776777789999999998553
No 190
>PRK08265 short chain dehydrogenase; Provisional
Probab=58.34 E-value=66 Score=26.14 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHH
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGAL 160 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~ 160 (188)
++.++++|+|+.+. +...+++.|-+-|. +|+-..|+++++.
T Consensus 4 ~~~k~vlItGas~g--IG~~ia~~l~~~G~----~V~~~~r~~~~~~ 44 (261)
T PRK08265 4 LAGKVAIVTGGATL--IGAAVARALVAAGA----RVAIVDIDADNGA 44 (261)
T ss_pred CCCCEEEEECCCCh--HHHHHHHHHHHCCC----EEEEEeCCHHHHH
Confidence 34568888888874 56666666666664 2333345554443
No 191
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.30 E-value=23 Score=23.16 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhH
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQNRKG 158 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHRtP~~ 158 (188)
.-+.++++...|++.|++|+.+.+.....++.
T Consensus 8 ~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~ 39 (73)
T cd03059 8 DDVYSHRVRIVLAEKGVSVEIIDVDPDNPPED 39 (73)
T ss_pred CChhHHHHHHHHHHcCCccEEEEcCCCCCCHH
Confidence 34678999999999999999987775433333
No 192
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=57.97 E-value=50 Score=30.49 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=45.5
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEE--E--Ec---CCCC-hhHHHHHHHHHhhCCCe---EEEEecCcc
Q 029774 116 PIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIK--I--LS---PHQN-RKGALSYALSAKERGIK---IIIVGDGVE 181 (188)
Q Consensus 116 pkVaIIMGS~SDl---pimekA~~vLeefGIpyDVr--V--aS---AHRt-P~~l~eyak~ae~~Gvk---VIIAvAGmA 181 (188)
.++.||+.+.-.- +..++....|++-|+++++. + +. .+++ ++.+.+..+.+.+.|++ ++||+-|++
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 4688998875543 45678888888888766522 2 22 3444 35677777777777776 999999985
No 193
>PRK13761 hypothetical protein; Provisional
Probab=57.95 E-value=36 Score=30.74 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=64.7
Q ss_pred eeccccccccccccceeecccc-cceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC
Q 029774 76 LASSNGSATSTRKDYSSVREPS-TVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ 154 (188)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHR 154 (188)
||=--||| -||.-+-.+. ++.+++-+---.......| |.=+=|..-=+ ..+++.+.-+..|.+.||.. .||
T Consensus 33 IAhGRGEa----FDYLlGEkT~~~A~~A~raAaA~LLlA~~P-VISVNGN~AAL-~p~eiveLa~~~~A~iEVNL--F~R 104 (248)
T PRK13761 33 IAHGRGEA----FDYLLGEKTTPSALEAERAAAALLLLAKHP-VISVNGNTAAL-VPEEIVELAEALNAKLEVNL--FYR 104 (248)
T ss_pred hhccCccH----HhHhcccCCcHHHHHHHHHHHHHHHhcCCC-eEEEcchHHhh-ChHHHHHHHHHhCCCEEEEe--ccC
Confidence 46667888 6887765443 3333332211112223334 33344544332 34677778888998766655 799
Q ss_pred ChhHHHHHHHHHhhCCCeEEEEecCccCcCcCC
Q 029774 155 NRKGALSYALSAKERGIKIIIVGDGVEAHLSGT 187 (188)
Q Consensus 155 tP~~l~eyak~ae~~GvkVIIAvAGmAAHLPGV 187 (188)
++++...+.+..++.|++.+....- .+.+||.
T Consensus 105 T~eR~~~I~~~l~~~Ga~~vlG~~~-~~~ip~L 136 (248)
T PRK13761 105 TEERVEKIAEVLREHGAKEVLGTDE-DARIPGL 136 (248)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCCC-cCcCCCC
Confidence 9999999999999999986554433 6777774
No 194
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=57.93 E-value=18 Score=28.89 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=37.3
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 113 NDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 113 ~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
...++|+++.= .+..+-+....+ -||++ +.....| +++++.+.++.+..+|++|||++..
T Consensus 75 ~~~~~Iavv~~-~~~~~~~~~~~~---ll~~~--i~~~~~~-~~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 75 KYGPKIAVVGY-PNIIPGLESIEE---LLGVD--IKIYPYD-SEEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp CCTSEEEEEEE-SS-SCCHHHHHH---HHT-E--EEEEEES-SHHHHHHHHHHHHHTT--EEEESHH
T ss_pred hcCCcEEEEec-ccccHHHHHHHH---HhCCc--eEEEEEC-CHHHHHHHHHHHHHcCCcEEECCHH
Confidence 44468888753 333333444444 45774 4444443 6999999999999999999998753
No 195
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=57.90 E-value=33 Score=28.15 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCCeEEEEeccCCCH---HHHHHHHHHHHHhCCC----eeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 114 DTPIVGIIMESDSDL---PVMNDAARTLSDFGVP----YEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 114 ~~pkVaIIMGS~SDl---pimekA~~vLeefGIp----yDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
...+|+||.+.-.+. ...+.|.+.|++.|++ ..+.|-+|-=.|-.+..+++ .+.++-+||..
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~---~~~~DavIalG 79 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAE---SGKYDAVIALG 79 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHH---cCCCCEEEEEe
Confidence 345899999999998 7789999999999975 23455667666666666654 34588888754
No 196
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.83 E-value=39 Score=27.60 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=46.2
Q ss_pred eEEEEeccCCC--------------HHHHHHHHHHHHHhCCCeeEEEEc-CCCChhHHHHHHHHHhhCCCeEEE
Q 029774 117 IVGIIMESDSD--------------LPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 117 kVaIIMGS~SD--------------lpimekA~~vLeefGIpyDVrVaS-AHRtP~~l~eyak~ae~~GvkVII 175 (188)
.+.-+.-+.|| ++.++++.+.++++|....+.... ..-+|+++.++++.+.+-|++.|.
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 46667778899 889999999999999988777755 444688899999888877887653
No 197
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=57.82 E-value=53 Score=22.17 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCC-CeEEEE
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIIIV 176 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~G-vkVIIA 176 (188)
.+.=|.+.+|...|++.||+|+..=+. ..|+...++.+...... +.|||.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHHHhCCCCcCEEEEC
Confidence 455688999999999999998877654 45666666664332233 355543
No 198
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=57.55 E-value=71 Score=23.13 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=41.3
Q ss_pred EEeccCCCHHHHHHHHHHHHHhC-CCe-------------------eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 120 IIMESDSDLPVMNDAARTLSDFG-VPY-------------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 120 IIMGS~SDlpimekA~~vLeefG-Ipy-------------------DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.+.|.-+-+..++.+...|.++| ++. -+-++|.....+++.+.++.++++|++++.--.
T Consensus 3 ~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 3 LIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred EEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 35566666777777777777765 432 355677777788888999888888887664433
No 199
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=57.28 E-value=25 Score=31.25 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=36.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCChh
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILSPHQNRK 157 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLee-fGIpyDVrVaSAHRtP~ 157 (188)
+|++++|+..|+-.+......|++ -++++.+-+.+-|+.++
T Consensus 2 ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~ 43 (365)
T TIGR03568 2 KICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPE 43 (365)
T ss_pred eEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChh
Confidence 699999999999999999999987 47888888899998765
No 200
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.93 E-value=39 Score=30.51 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=43.9
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+ ++.-+++...+.++++||.+++.-....-+.+++.+.++...+
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677777876 4455677788999999999999999999999999999987754
No 201
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=56.91 E-value=16 Score=34.17 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCe-------------------------eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 130 VMNDAARTLSDFGVPY-------------------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 130 imekA~~vLeefGIpy-------------------------DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
+.+.+.+.|+.+||+. ...|...|.....+.++.++ ++|+|+++|...-+
T Consensus 214 Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~-----ADIVIsAvGkp~~i 288 (364)
T PLN02616 214 TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRE-----ADIIISAVGQPNMV 288 (364)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcC
Confidence 4566788888888864 35678889888888888864 69999999998755
Q ss_pred c
Q 029774 185 S 185 (188)
Q Consensus 185 P 185 (188)
.
T Consensus 289 ~ 289 (364)
T PLN02616 289 R 289 (364)
T ss_pred C
Confidence 4
No 202
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=56.89 E-value=1e+02 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=17.5
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
..++.+|+|..+. +...++..|-+-|.
T Consensus 9 ~~k~vlVtGas~g--iG~~ia~~l~~~G~ 35 (278)
T PRK08277 9 KGKVAVITGGGGV--LGGAMAKELARAGA 35 (278)
T ss_pred CCCEEEEeCCCch--HHHHHHHHHHHCCC
Confidence 3467788888773 55666666666664
No 203
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.86 E-value=91 Score=25.90 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHHHh
Q 029774 126 SDLPVMNDAARTLSDF 141 (188)
Q Consensus 126 SDlpimekA~~vLeef 141 (188)
.|.+...+..+.|...
T Consensus 40 ~~~~~~~~~i~~~~~~ 55 (305)
T cd06324 40 RDRFLMLQQARTILQR 55 (305)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 3444444444444443
No 204
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=56.78 E-value=1e+02 Score=26.54 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 115 TPIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 115 ~pkVaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
..+|++++....+- .+.+.+.+.++++| |++.+.+....++...++++...+.+++-+|..+.
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g--~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecCCCchHHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45799888654332 33455667777887 56777888888988889998888888988887653
No 205
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.38 E-value=78 Score=27.49 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCCh-hHHHHHHHHHhhCCCeEE
Q 029774 128 LPVMNDAARTLSDFGVPYEIKILSPHQNR-KGALSYALSAKERGIKII 174 (188)
Q Consensus 128 lpimekA~~vLeefGIpyDVrVaSAHRtP-~~l~eyak~ae~~GvkVI 174 (188)
++.+.++.+..++.|+...+.+.-+.|+| +.+.++++.+.+-|++.|
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRV 158 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34455666777788999899988899997 888889988888788754
No 206
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=56.33 E-value=59 Score=31.07 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=42.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChhHHHHHHHHHhhC---CCeEEEEecCcc
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKER---GIKIIIVGDGVE 181 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH---RtP~~l~eyak~ae~~---GvkVIIAvAGmA 181 (188)
++.||+..... ...++..+.|+..|+.+...|...- ++.+.+.+..+.+.+. ..+++||+-|++
T Consensus 211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGs 280 (542)
T PRK14021 211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGA 280 (542)
T ss_pred eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChH
Confidence 56777755443 4678888999999987555555432 3455555555544444 489999999975
No 207
>PRK09492 treR trehalose repressor; Provisional
Probab=56.17 E-value=1.1e+02 Score=25.07 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=44.3
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
..|+++....+| ...++.+.+.+++.| |++-+......++...++++.....+++-+|..
T Consensus 63 ~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~g--y~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 63 KVVGIIVSRLDSLSENQAVRTMLPAFYEQG--YDPIIMESQFSPEKVNEHLGVLKRRNVDGVILF 125 (315)
T ss_pred CeEEEEecCCcCcccHHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 469998864333 456778888888888 566677777888888888877777778877754
No 208
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.72 E-value=97 Score=24.18 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=26.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 118 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 118 VaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+++..+.+| ..+.+.+.+.++++|.. +.+....... ...+.++.+..++++.+|..+
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~~~-~~~~~i~~~~~~~vdgiii~~ 62 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQ--PLLINTDDDE-DLDAALRQLLQYRVDGVIVTS 62 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCe--EEEEcCCCCH-HHHHHHHHHHHcCCCEEEEec
Confidence 4555544333 22334445555666643 3333333222 344455555555566555543
No 209
>PRK13059 putative lipid kinase; Reviewed
Probab=55.71 E-value=37 Score=29.27 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=33.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 123 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 123 GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
|+..+....+++.+.|++.|+++.+....-+... +.+.++..++++++|++-|
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi~~GG 65 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYILIAGG 65 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEEEECC
Confidence 5555566778889999999988766544433222 3333444567787765443
No 210
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=55.49 E-value=56 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCeEEEEeccCCCHHH---HHHHHHHHHHhCCC----eeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 115 TPIVGIIMESDSDLPV---MNDAARTLSDFGVP----YEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpi---mekA~~vLeefGIp----yDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
..+|+||.+.-.+.-+ .+.|.+.|++.|++ ..++|-+|.=.|--..++++ ...++.+||.
T Consensus 7 ~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~---s~~~DavIaL 73 (141)
T PLN02404 7 GLRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAK---SGKYDAILCI 73 (141)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 3589999998877543 67888999999997 34567778888877777764 3458888875
No 211
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=55.17 E-value=63 Score=27.92 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.+.-+..+.+++|++.-.++..-.|+...+.+++..+...|++=+.+..|-.
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~ 97 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDP 97 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4444455555889999999999999999999999999999998888877753
No 212
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.15 E-value=43 Score=30.37 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=43.5
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+. +.-+++...+.++++||.++....++.-+.+++.+.++...+
T Consensus 35 LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 35 LAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5677777664 555678889999999999999999999999999999987754
No 213
>PRK06139 short chain dehydrogenase; Provisional
Probab=54.99 E-value=77 Score=27.77 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHhh--CCCeEEEEecCcc
Q 029774 155 NRKGALSYALSAKE--RGIKIIIVGDGVE 181 (188)
Q Consensus 155 tP~~l~eyak~ae~--~GvkVIIAvAGmA 181 (188)
.++.+.++++..++ .+++++|-.||..
T Consensus 67 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 67 DADQVKALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 45555555544432 3468888888753
No 214
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.67 E-value=45 Score=30.08 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=44.3
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.|- -+++...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNN 86 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678888877554 4577888999999999999999999999999999987754
No 215
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.48 E-value=85 Score=24.75 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.1
Q ss_pred CCeEEEEecCcc
Q 029774 170 GIKIIIVGDGVE 181 (188)
Q Consensus 170 GvkVIIAvAGmA 181 (188)
+++++|..||..
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 578888888764
No 216
>PRK12757 cell division protein FtsN; Provisional
Probab=54.47 E-value=85 Score=28.23 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=53.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE-------E-EEcCCCChhHHHHHHHHHhhCCC-eEEEEecCc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEI-------K-ILSPHQNRKGALSYALSAKERGI-KIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDV-------r-VaSAHRtP~~l~eyak~ae~~Gv-kVIIAvAGm 180 (188)
....|=.||-+|.+-++....-|...|++..+ | .++...+.+.+.++.+..+..|+ .+||..+|+
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 34678899999999999999999988876322 2 25677789999999999988887 888888874
No 217
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=54.46 E-value=90 Score=25.16 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.4
Q ss_pred HHhhCCCeEE
Q 029774 165 SAKERGIKII 174 (188)
Q Consensus 165 ~ae~~GvkVI 174 (188)
.+.+.|+.|+
T Consensus 76 ~~~~~giPvV 85 (268)
T cd06306 76 QQVAASIPVI 85 (268)
T ss_pred HHHHCCCCEE
Confidence 3344444444
No 218
>smart00642 Aamy Alpha-amylase domain.
Probab=54.29 E-value=56 Score=26.34 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC------------------------CCChhHHHHHHHHHhhCCCeEEE
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSP------------------------HQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSA------------------------HRtP~~l~eyak~ae~~GvkVII 175 (188)
-|+.-+.+-.+.|+++|+.. +.+..+ .=+.+++.++++++.++|++|++
T Consensus 16 G~~~gi~~~l~yl~~lG~~~-I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTA-IWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCE-EEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 46666666667899999862 111111 12458899999999999999986
No 219
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.28 E-value=51 Score=29.69 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=43.3
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+.|- -+++...+.++++||.+++.-+++.-+.+++.+.++...+
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567777766554 4577788999999999999999999999999999987754
No 220
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.05 E-value=49 Score=29.86 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=44.2
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+.+- -+++...+.++++||.+++...++.-+.+++.+.++...+
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677788877654 5577888999999999999999999999999999987754
No 221
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.83 E-value=49 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=43.8
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.|- -+++.-.+.++++||.++..-.++.-+-+++.+.++...+
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3677788876554 4577788999999999999999999999999999987644
No 222
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=53.78 E-value=96 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=16.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVP-YEIKILSP 152 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIp-yDVrVaSA 152 (188)
|.++.|+|+ |.+...++++.+.+.|++ .|+.+.++
T Consensus 100 pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP 135 (289)
T cd02810 100 PLIASVGGS--SKEDYVELARKIERAGAKALELNLSCP 135 (289)
T ss_pred eEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 344445554 333444455555555554 35554444
No 223
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.71 E-value=20 Score=32.17 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|+..+.+.++.++ ++++|+++|.+.-++
T Consensus 170 VGkPla~lL~~~~----ATVt~chs~T~dl~~~~k~-----ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 170 VGKPVSQLLLNAK----ATVTTCHRFTTDLKSHTTK-----ADILIVAVGKPNFIT 216 (282)
T ss_pred chHHHHHHHHHCC----CEEEEEcCCCCCHHHHhhh-----cCEEEEccCCcCcCC
Confidence 4555566665443 5678889888888888764 699999999987654
No 224
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=53.60 E-value=53 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSPH 153 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSAH 153 (188)
....|..+++..+|+.++|+|+.+=+|-|
T Consensus 13 R~t~~~C~~ak~iL~~~~V~~~e~DVs~~ 41 (147)
T cd03031 13 RKTFEDCNNVRAILESFRVKFDERDVSMD 41 (147)
T ss_pred CCcChhHHHHHHHHHHCCCcEEEEECCCC
Confidence 34889999999999999999999888876
No 225
>PRK06455 riboflavin synthase; Provisional
Probab=53.59 E-value=88 Score=26.28 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=43.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC--CCe-eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFG--VPY-EIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefG--Ipy-DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.+|+|+-..-++....+-|.+.|+++| +.+ .++|=++-=.|-...++++ ..+++.+||.
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~---~~~yDaVIaL 63 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIE---EEGCDIVMAL 63 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 479999999999888999999999977 333 2345556666666666654 4568888875
No 226
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=53.53 E-value=80 Score=30.62 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=53.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVa---SAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
.|.-|.-+-||.+.++.+.+..++.|...+..|+ |+--+++.+.++++.+.+-|++ .|+++-+++.|
T Consensus 112 di~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad-~I~IkDtaGll 181 (499)
T PRK12330 112 DVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGAD-SICIKDMAALL 181 (499)
T ss_pred CEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCC-EEEeCCCccCC
Confidence 4677788899999999999999999986644431 3333899999999999988987 56787777654
No 227
>PRK05872 short chain dehydrogenase; Provisional
Probab=53.51 E-value=96 Score=26.03 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=16.3
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefG 142 (188)
...++.+|+|..+. +...+++.|.+-|
T Consensus 7 l~gk~vlItGas~g--IG~~ia~~l~~~G 33 (296)
T PRK05872 7 LAGKVVVVTGAARG--IGAELARRLHARG 33 (296)
T ss_pred CCCCEEEEECCCch--HHHHHHHHHHHCC
Confidence 34567788888774 3445555555555
No 228
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.48 E-value=22 Score=32.00 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
+.++.+..|.+-| ..|...|...+.+.++.++ ++++|+++|.+.-+
T Consensus 169 VGkPla~lL~~~~----AtVtichs~T~nl~~~~~~-----ADIvI~AvGk~~~i 214 (282)
T PRK14182 169 VGKPMAMMLLERH----ATVTIAHSRTADLAGEVGR-----ADILVAAIGKAELV 214 (282)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCcc
Confidence 3455555554433 4667779888888888864 69999999986544
No 229
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.48 E-value=58 Score=29.07 Aligned_cols=51 Identities=6% Similarity=0.153 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCC-------------CChh-HHHHHHHHHhhCCCeEEEEe
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPH-------------QNRK-GALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAH-------------RtP~-~l~eyak~ae~~GvkVIIAv 177 (188)
+.+.+++.++.+++.+||+|+-++-.+ |-|+ +..+++++.+++|++|++-+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 456688899999999999999888744 5555 24778888889999987754
No 230
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=53.46 E-value=68 Score=21.72 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=26.3
Q ss_pred hCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 141 FGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 141 fGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
.|+++...+... .+ ...+.+.+++.+++++|.++.....++
T Consensus 68 ~~~~~~~~~~~~--~~--~~~i~~~~~~~~~dlvvig~~~~~~~~ 108 (130)
T cd00293 68 AGVKVETVVLEG--DP--AEAILEAAEELGADLIVMGSRGRSGLR 108 (130)
T ss_pred CCCceEEEEecC--CC--HHHHHHHHHHcCCCEEEEcCCCCCccc
Confidence 577766665532 23 455556666778899988887666554
No 231
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=53.38 E-value=59 Score=23.73 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=43.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.+.++....-|=++ +..+++.||+. .+|-.|-+..-..+.++++..+ +|..+.|+..|
T Consensus 11 ~~~~lvS~s~DGe~---ia~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 11 KIAALVSRSRDGEL---IARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CEEEEEccCcCHHH---HHHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 46666666667655 56778899986 5666666667788888888776 68899998877
No 232
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=53.37 E-value=80 Score=25.46 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=36.3
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHH------------------------HHHHHHhh--
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGAL------------------------SYALSAKE-- 168 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~------------------------eyak~ae~-- 168 (188)
++++++|+|+.+.+ ...+++.|-+.|.. + +-..|+++++. +.+++..+
T Consensus 5 ~~k~vlVtGas~gI--G~~ia~~l~~~G~~--V--~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 5 HGQVALITGGGSGI--GRALVERFLAEGAR--V--AVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCEEEEeCCCchH--HHHHHHHHHHCCCE--E--EEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 45688999988854 56666666666642 2 32345544443 33332221
Q ss_pred CCCeEEEEecCcc
Q 029774 169 RGIKIIIVGDGVE 181 (188)
Q Consensus 169 ~GvkVIIAvAGmA 181 (188)
..++++|-.||..
T Consensus 79 g~id~li~~ag~~ 91 (263)
T PRK06200 79 GKLDCFVGNAGIW 91 (263)
T ss_pred CCCCEEEECCCCc
Confidence 2478999999864
No 233
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=53.35 E-value=1.2e+02 Score=26.93 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=50.4
Q ss_pred ccCCCCCCCCCCCeEEEEeccCC----------------CHHHHHHHHHHHHHhCCCe-eEEEEc---CCCChhHHHHHH
Q 029774 104 NANGDSTGKNDTPIVGIIMESDS----------------DLPVMNDAARTLSDFGVPY-EIKILS---PHQNRKGALSYA 163 (188)
Q Consensus 104 ~~~g~~~~~~~~pkVaIIMGS~S----------------DlpimekA~~vLeefGIpy-DVrVaS---AHRtP~~l~eya 163 (188)
|++-++.....+..|||||=+-- =...++++.+.+.++||++ .+.+.| ..|.++++..+.
T Consensus 4 ~~~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm 83 (249)
T PRK14834 4 PAKDESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLF 83 (249)
T ss_pred CcCCCCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHH
Confidence 44444444555667999995543 2456677888888999995 555555 568888876543
Q ss_pred H-----------HHhhCCCeEEEEecCccCcCcC
Q 029774 164 L-----------SAKERGIKIIIVGDGVEAHLSG 186 (188)
Q Consensus 164 k-----------~ae~~GvkVIIAvAGmAAHLPG 186 (188)
+ ...+.|++ |-+-|--..||.
T Consensus 84 ~L~~~~l~~~~~~~~~~~ir--i~viGd~~~Lp~ 115 (249)
T PRK14834 84 GLLRLFIRRDLAELHRNGVR--VRVIGERAGLEA 115 (249)
T ss_pred HHHHHHHHHHHHHHHHCCcE--EEEEcChhhCCH
Confidence 1 22344444 445556666764
No 234
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.27 E-value=50 Score=29.75 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=43.5
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367778886644 44577788899999999999999999999999999987754
No 235
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=53.00 E-value=46 Score=21.27 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=25.1
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCh
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR 156 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP 156 (188)
|+|+.-..++...+....+.|+..+ +++.+++.+-.+
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 37 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAG--AEVDVVSPDGGP 37 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 4566666777767777777887776 566666665554
No 236
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=52.69 E-value=46 Score=22.11 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=33.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCC--eeEEEEcCCCChhHHHHHHHH
Q 029774 124 SDSDLPVMNDAARTLSDFGVP--YEIKILSPHQNRKGALSYALS 165 (188)
Q Consensus 124 S~SDlpimekA~~vLeefGIp--yDVrVaSAHRtP~~l~eyak~ 165 (188)
+.+.=|.++++...|++++++ |++.-+.....+..+.+++..
T Consensus 5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~ 48 (84)
T TIGR02180 5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEE 48 (84)
T ss_pred ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHH
Confidence 356678999999999999999 877777777777777766543
No 237
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=52.59 E-value=84 Score=24.89 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=25.7
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEE
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVII 175 (188)
+..+..|.....+..+.|...++ |--|+.++. ++...+.++.+.+.|+.++.
T Consensus 35 ~~~~~~~~~~~~~~i~~l~~~~v--dgiii~~~~-~~~~~~~~~~l~~~~iPvv~ 86 (272)
T cd06301 35 FEDAKNDVATQLSQVENFIAQGV--DAIIVVPVD-TAATAPIVKAANAAGIPLVY 86 (272)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCC--CEEEEecCc-hhhhHHHHHHHHHCCCeEEE
Confidence 33445666666666666655554 444444433 22233444444455555543
No 238
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.42 E-value=88 Score=27.72 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=43.2
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhC
Q 029774 116 PIVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER 169 (188)
Q Consensus 116 pkVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~ 169 (188)
..+.|..|.+.+-. +++--...++++|+++++.-.+++-+++++.++++...+.
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35677777665544 4566677889999999999999999999999999887655
No 239
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=52.30 E-value=1.1e+02 Score=24.55 Aligned_cols=62 Identities=26% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC-CCChhHHHHHHHHHhhCCCeEE
Q 029774 113 NDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 113 ~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSA-HRtP~~l~eyak~ae~~GvkVI 174 (188)
...++|.|++|+-.-=--.--++..|.+.|++.++..... .+..+......+.+++-|.+++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 4456899999999888888889999999999877755653 2444445555556666565543
No 240
>PRK05854 short chain dehydrogenase; Provisional
Probab=51.95 E-value=1.1e+02 Score=26.16 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHH
Q 029774 113 NDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS 161 (188)
Q Consensus 113 ~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~e 161 (188)
+++++++||+|..+ -+...+++.|-+-|. .| +-+-|+++++.+
T Consensus 11 ~l~gk~~lITGas~--GIG~~~a~~La~~G~--~V--il~~R~~~~~~~ 53 (313)
T PRK05854 11 DLSGKRAVVTGASD--GLGLGLARRLAAAGA--EV--ILPVRNRAKGEA 53 (313)
T ss_pred ccCCCEEEEeCCCC--hHHHHHHHHHHHCCC--EE--EEEeCCHHHHHH
Confidence 34567888999887 556777777776663 33 223355544443
No 241
>PRK08643 acetoin reductase; Validated
Probab=51.82 E-value=76 Score=25.30 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhh--CCCeEEEEecCc
Q 029774 156 RKGALSYALSAKE--RGIKIIIVGDGV 180 (188)
Q Consensus 156 P~~l~eyak~ae~--~GvkVIIAvAGm 180 (188)
|+.+.+.+++..+ .+++++|-.||.
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 63 RDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4444444444322 347888888875
No 242
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=51.70 E-value=1.1e+02 Score=24.62 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=22.2
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHH
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGAL 160 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~ 160 (188)
+.+..+|+|+.+. +....++.|-+.|. +|+...|+++++.
T Consensus 11 ~~k~ilItGa~g~--IG~~la~~l~~~G~----~V~~~~r~~~~~~ 50 (259)
T PRK08213 11 SGKTALVTGGSRG--LGLQIAEALGEAGA----RVVLSARKAEELE 50 (259)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCC----EEEEEeCCHHHHH
Confidence 3457777777764 34555555555554 3444455555443
No 243
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=51.67 E-value=91 Score=22.62 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=42.4
Q ss_pred EEeccCCCHHHHHHHHHHHHHhCCC--------------------eeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 120 IIMESDSDLPVMNDAARTLSDFGVP--------------------YEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 120 IIMGS~SDlpimekA~~vLeefGIp--------------------yDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.+.|.-+-+..++.....|..+|.+ --+-++|..+..+++.+.++.++++|++|+--...
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445555555666666555555543 23556778888889999999999999887665554
Q ss_pred ccCcC
Q 029774 180 VEAHL 184 (188)
Q Consensus 180 mAAHL 184 (188)
..+-|
T Consensus 84 ~~s~l 88 (128)
T cd05014 84 PNSTL 88 (128)
T ss_pred CCCch
Confidence 44433
No 244
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.58 E-value=56 Score=28.54 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcC-------------CCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSP-------------HQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSA-------------HRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.-+.+.+.+.++.++++|||+|+-++-- .|-|+ ..+++++.++.|+++.+-+.
T Consensus 26 ~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 26 DINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEEC
Confidence 4456778889999999999998877742 35565 78888889999999887654
No 245
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=51.56 E-value=1.2e+02 Score=24.52 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=38.5
Q ss_pred CCeEEEEeccCCCHHH----HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHh-hCCCeEEEEecCcc
Q 029774 115 TPIVGIIMESDSDLPV----MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK-ERGIKIIIVGDGVE 181 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpi----mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae-~~GvkVIIAvAGmA 181 (188)
+++|+||+-|++-... ..-....|+++|++..... -..-.++.+.+.++++- .++++++|.-.|.+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRA-IVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEE-EcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3578888655532222 2234556888998632211 13456666667666553 35689998875543
No 246
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.52 E-value=61 Score=29.15 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=44.1
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+-. +++.-.+.++++||.++..-.++.=+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35677788776655 567778999999999999999999999999999987754
No 247
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.50 E-value=55 Score=29.60 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=43.5
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.+++..+
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777776654 44577888999999999999999999999999999987754
No 248
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=51.46 E-value=86 Score=25.87 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=37.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.+|+|+.-++.....++...+.+++.|+......... ..+.+..++..+++.+.++||...
T Consensus 128 ~~vaii~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~--~~~d~~~~l~~i~~~~~d~Vi~~~ 188 (324)
T cd06368 128 RKFVYIYDSDEGLLRLQELLDALSPKGIQVTVRRLDD--DTDMYRPLLKEIKREKERRIILDC 188 (324)
T ss_pred CEEEEEECCcHhHHHHHHHHHhhccCCceEEEEEecC--CchHHHHHHHHHhhccCceEEEEC
Confidence 5799887544333445666666666776655443322 223577777778788888877654
No 249
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=51.15 E-value=92 Score=27.40 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=50.8
Q ss_pred eEEEEecc-CCCHHHHHHHHHHH-HHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMES-DSDLPVMNDAARTL-SDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS-~SDlpimekA~~vL-eefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
.|.|--|. .|+..---.++..| +++|++.-.++..-.++...+.+++..+...|++=+.|..|-..
T Consensus 32 fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 32 FIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred EEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 35555554 45555544455555 58899999999999999999999999998999998888888653
No 250
>PRK07074 short chain dehydrogenase; Provisional
Probab=51.10 E-value=1.1e+02 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=13.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefG 142 (188)
++.+|+|..+. +....+..|.+-|
T Consensus 3 k~ilItGat~~--iG~~la~~L~~~g 26 (257)
T PRK07074 3 RTALVTGAAGG--IGQALARRFLAAG 26 (257)
T ss_pred CEEEEECCcch--HHHHHHHHHHHCC
Confidence 45666666663 4555555555555
No 251
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=51.05 E-value=55 Score=27.42 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCC---CChhHHHHHHHHHhhCCCeEEEE
Q 029774 117 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 117 kVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAH---RtP~~l~eyak~ae~~GvkVIIA 176 (188)
+|.+|+|=.. ..+..+.+.....+.....++.|-++. +.|+.++++.+..+. .++||+
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~--ADii~~ 63 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIAR--ADIIFG 63 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHh--CCEEEe
Confidence 4555555444 444444444444565667788887754 999888888876554 688876
No 252
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=50.90 E-value=34 Score=29.15 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=63.8
Q ss_pred ccccceeeecccccCCcc------eeEE-eeeceeeeeccccc-cc-cccccceeecccccc--eeecccCCCCCCCCCC
Q 029774 47 KFVEGKVRMLNNSRRSNS------VRTV-SQGTIPVLASSNGS-AT-STRKDYSSVREPSTV--FEEENANGDSTGKNDT 115 (188)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 115 (188)
++.+++|..+=-...|.. +..+ ..=.||+|.-+..+ .. +.+..|-.-+...|- ....+. -+....-.-
T Consensus 58 ~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai-~~ll~~~~w 136 (362)
T cd06367 58 LLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVM-LEILEEYDW 136 (362)
T ss_pred HhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHH-HHHHHHcCC
Confidence 356677777644433332 3332 46689999744333 22 233344433222221 111110 000001122
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEc-CCCChh-HHHHHHHHHhhCCCeEEEEec
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILS-PHQNRK-GALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaS-AHRtP~-~l~eyak~ae~~GvkVIIAvA 178 (188)
.+|+||.-++.. ...++...+.|++.|+.+++.... ....+. ....++...++.+.++||...
T Consensus 137 ~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 202 (362)
T cd06367 137 HQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKKLESRVILLYC 202 (362)
T ss_pred eEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHhcCCcEEEEeC
Confidence 468888765443 344666777888889873333222 222232 455566566666678777654
No 253
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=50.78 E-value=1.5e+02 Score=24.92 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
...|++++-..+| ..+.+.+.+.++++| |++-+...+..+++..++++.+.+.+++-+|...
T Consensus 59 ~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 59 SDTIGVVVMDVSDAFFGALVKAVDLVAQQHQ--KYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHS 123 (346)
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHCC--CEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 3468888865443 234566777788887 4666777777888888888887777888777654
No 254
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.68 E-value=52 Score=29.57 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=43.7
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+- -+++...+.++++||.+++.-.++.-+.+++.+.++...+
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567778876554 4577788899999999999999999999999999987754
No 255
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.65 E-value=63 Score=29.23 Aligned_cols=53 Identities=8% Similarity=0.102 Sum_probs=43.3
Q ss_pred CeEEEEeccCCCHHH-HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLPV-MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlpi-mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+-.. ++...+.++++||.+++.-.+..-+.+++.+.+++..+
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356777787655544 66678999999999999999999999999999987644
No 256
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.55 E-value=59 Score=29.28 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=43.0
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+.+ .-+++...+.++++||.+++...+..-+.+++.+.++...+
T Consensus 35 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 35 LGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55677776654 45577888999999999999999999999999999987754
No 257
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=50.51 E-value=49 Score=28.83 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=39.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.+|+||.-++.++..+++..+.+++.|+...+ -............++..++.+.++||..
T Consensus 140 k~vaily~~~~g~~~l~~~~~~~~~~g~~v~~--~~~~~~~~d~~~~L~~ik~~~~~~iil~ 199 (384)
T cd06393 140 RSATVVYDDSTGLIRLQELIMAPSRYNIRLKI--RQLPTDSDDARPLLKEMKRGREFRIIFD 199 (384)
T ss_pred cEEEEEEeCchhHHHHHHHHHhhhccCceEEE--EECCCCchHHHHHHHHHhhcCceEEEEE
Confidence 47999987655555556777777778876543 3333334567777777777677766553
No 258
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=50.38 E-value=1.1e+02 Score=24.37 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=34.6
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|=|+.| -|.++.++....|+.+|.+..+=--.+.-..--++++.+.+++-++-|++.-
T Consensus 2 VFIvhg--~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~T 59 (125)
T PF10137_consen 2 VFIVHG--RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFT 59 (125)
T ss_pred EEEEeC--CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEc
Confidence 445555 8889999999999999986543333333333333344444444556666543
No 259
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=50.32 E-value=67 Score=28.50 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
+.+-+..++++.|++.-.++..-.|+...+.+.+..+.+.|++=+.|..|=-
T Consensus 70 ~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~ 121 (296)
T PRK09432 70 THSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDL 121 (296)
T ss_pred HHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3434556668999999999999999999999999999999999999998863
No 260
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=50.24 E-value=43 Score=24.89 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 133 DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 133 kA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
+..+.+++.+|+ ++-|+-+.-..+.+.++++.+++.|++|.++
T Consensus 132 ~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 132 DLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 345677888887 7777777777889999999999999988764
No 261
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=49.91 E-value=1.1e+02 Score=24.85 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=14.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefG 142 (188)
.++.+|+|..+ .+...+++.|-+.|
T Consensus 10 ~k~~lItGa~~--~iG~~ia~~l~~~G 34 (265)
T PRK07097 10 GKIALITGASY--GIGFAIAKAYAKAG 34 (265)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCC
Confidence 35667777666 33445555555555
No 262
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=49.89 E-value=90 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=28.3
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN 155 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt 155 (188)
|.|. |.+.=|.+.+|...|+++||+|++.-+..+-.
T Consensus 10 Vvvy--sk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~ 45 (99)
T TIGR02189 10 VVIF--SRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPA 45 (99)
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCCCEEEEcCCCcc
Confidence 5444 44778999999999999999998777775433
No 263
>PRK01060 endonuclease IV; Provisional
Probab=49.87 E-value=98 Score=25.68 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=43.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCC------CChhHHHHHHHHHhhCCCeE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVP-YEIKILSPH------QNRKGALSYALSAKERGIKI 173 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIp-yDVrVaSAH------RtP~~l~eyak~ae~~GvkV 173 (188)
+|+..+.=.+| ++++.+.++++|.. .|+.+.++| -+++.+.++.+..++.|+++
T Consensus 3 ~~g~~~~~~~~---~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 3 LIGAHVSAAGG---LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred eEEEeeecCCC---HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 78998888888 77899999999998 588776665 35667888888888888874
No 264
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=49.50 E-value=75 Score=21.95 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=26.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS 151 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaS 151 (188)
.+|-|.+. +.=+.++++.+.|+++||+|+..-+.
T Consensus 8 ~~V~ly~~--~~Cp~C~~ak~~L~~~gi~y~~idi~ 41 (79)
T TIGR02190 8 ESVVVFTK--PGCPFCAKAKATLKEKGYDFEEIPLG 41 (79)
T ss_pred CCEEEEEC--CCCHhHHHHHHHHHHcCCCcEEEECC
Confidence 35665554 66799999999999999999876654
No 265
>PRK08589 short chain dehydrogenase; Validated
Probab=49.37 E-value=1.2e+02 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhh--CCCeEEEEecCcc
Q 029774 156 RKGALSYALSAKE--RGIKIIIVGDGVE 181 (188)
Q Consensus 156 P~~l~eyak~ae~--~GvkVIIAvAGmA 181 (188)
++.+.++++...+ ..++++|..||..
T Consensus 66 ~~~~~~~~~~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 66 EQQVKDFASEIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHHHHHHHHHHcCCcCEEEECCCCC
Confidence 4444555544432 2478999988864
No 266
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=49.21 E-value=32 Score=22.60 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHH
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 164 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak 164 (188)
+.+.++...|++.|++|+...+..........+|.+
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~ 45 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLK 45 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHh
Confidence 457789999999999999988875443333344443
No 267
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.21 E-value=66 Score=28.96 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=43.2
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.|-. +++...+.++++||.++..-++..-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35677778766544 466678999999999999999999999999999987754
No 268
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=49.17 E-value=1.6e+02 Score=24.83 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhhC--CCeEEEEecCcc
Q 029774 156 RKGALSYALSAKER--GIKIIIVGDGVE 181 (188)
Q Consensus 156 P~~l~eyak~ae~~--GvkVIIAvAGmA 181 (188)
++.+.++++...+. .++++|-.||..
T Consensus 67 ~~~v~~~~~~~~~~~~~iD~li~nAg~~ 94 (322)
T PRK07453 67 LDSVRRFVDDFRALGKPLDALVCNAAVY 94 (322)
T ss_pred HHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 44455555443332 378999988853
No 269
>PRK08177 short chain dehydrogenase; Provisional
Probab=49.02 E-value=1.3e+02 Score=23.69 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 156 RKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 156 P~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
++.+.++.+...+.+++++|-.||..
T Consensus 57 ~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 57 PASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 44455566555445689999999874
No 270
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.91 E-value=88 Score=28.04 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcC----------------------------------CCChhHHHHHHHHHhhCC
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSP----------------------------------HQNRKGALSYALSAKERG 170 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSA----------------------------------HRtP~~l~eyak~ae~~G 170 (188)
.-+...+++.++-+++.|||+|+-++-. .|-| ...++++..+++|
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP-dp~~mi~~Lh~~G 98 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP-NPKGMIDELHEQG 98 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC-CHHHHHHHHHHCC
Confidence 3466778999999999999999977730 1112 3678888888999
Q ss_pred CeEEE
Q 029774 171 IKIII 175 (188)
Q Consensus 171 vkVII 175 (188)
++|++
T Consensus 99 ~kv~l 103 (340)
T cd06597 99 VKVLL 103 (340)
T ss_pred CEEEE
Confidence 99865
No 271
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=48.91 E-value=42 Score=27.57 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=41.2
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|+||...++ -....+...+.|++.|+++ +.....--....+..++....+.++++++..++.
T Consensus 136 ~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~v-v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~ 200 (343)
T PF13458_consen 136 KKVAIVYPDDPYGRSLAEAFRKALEAAGGKV-VGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDP 200 (343)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTH
T ss_pred cEEEEEecCchhhhHHHHHHHHHHhhcCcee-ccceecccccccchHHHHHHhhcCCCEEEEeccc
Confidence 47888875532 2345667788889999983 2222222344667777777777788887766543
No 272
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=48.89 E-value=84 Score=26.71 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
....-+..++++.|++.-.++..-.|+...+.+++..+...|++=+.++.|=.
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 45666777778889999999999999999999999999999999788887743
No 273
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=48.88 E-value=1.2e+02 Score=25.66 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=40.9
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEE
Q 029774 118 VGIIMESDSDL--------------PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 174 (188)
Q Consensus 118 VaIIMGS~SDl--------------pimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVI 174 (188)
..-+..|.||. +-+.++.+.+++.|....+...-+.|. |+.+.++++.+.+-|++.|
T Consensus 85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i 156 (259)
T cd07939 85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRL 156 (259)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEE
Confidence 34444488887 445677778888998777666667665 7888889888877787653
No 274
>PRK07478 short chain dehydrogenase; Provisional
Probab=48.69 E-value=1.4e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHhh--CCCeEEEEecCcc
Q 029774 155 NRKGALSYALSAKE--RGIKIIIVGDGVE 181 (188)
Q Consensus 155 tP~~l~eyak~ae~--~GvkVIIAvAGmA 181 (188)
.++.+.+++++..+ ..++++|-.||..
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 66 DEAYAKALVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34444444443322 2478888888864
No 275
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=48.55 E-value=62 Score=29.55 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=70.1
Q ss_pred eceeeeeccccccccccccceeeccccc--ceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHH-HHhCCCeeE
Q 029774 71 GTIPVLASSNGSATSTRKDYSSVREPST--VFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTL-SDFGVPYEI 147 (188)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vL-eefGIpyDV 147 (188)
--+||++|..+...+.=.||....+.-. -..+.|.+ +-+.++ ...=..|-+..++..+.+ +...+|.-+
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiS----cPnt~g----~~~l~~~~e~l~~l~~~vk~~~~~Pv~v 166 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNIS----CPNTPG----GRALGQDPELLEKLLEAVKAATKVPVFV 166 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEcc----CCCCCC----hhhhccCHHHHHHHHHHHHhcccCceEE
Confidence 4577888877767666778877666544 45556665 455443 222235777777777555 467899999
Q ss_pred EEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 148 KILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 148 rVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
++.. +-+++.++++.+++.|++=+|++.
T Consensus 167 Kl~P---~~~di~~iA~~~~~~g~Dgl~~~N 194 (310)
T COG0167 167 KLAP---NITDIDEIAKAAEEAGADGLIAIN 194 (310)
T ss_pred EeCC---CHHHHHHHHHHHHHcCCcEEEEEe
Confidence 9887 889999999999999999998876
No 276
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=48.50 E-value=44 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChh
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQNRK 157 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHRtP~ 157 (188)
.-+...++..+|++.|++|+..-+.....++
T Consensus 8 ~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~ 38 (71)
T cd03060 8 RCPYAMRARMALLLAGITVELREVELKNKPA 38 (71)
T ss_pred CCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH
Confidence 3467889999999999999987776543333
No 277
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=48.49 E-value=46 Score=27.42 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhH-------HHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQNRKG-------ALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHRtP~~-------l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
|.+.+++..+.|++ ..|+-|++.|=..+. ..++++.+.+.|+++|| |.-.|.+
T Consensus 160 ~~~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~Ii---G~H~Hv~ 219 (239)
T cd07381 160 DLERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVI---GHHPHVL 219 (239)
T ss_pred CHHHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEE---cCCCCcC
Confidence 44556666666655 389999999974432 45677666667899998 4444443
No 278
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.24 E-value=71 Score=28.79 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=43.6
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+. +.-+++...+.++++||.++..-.+..-+.+++.+.+++..+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35667777654 455678889999999999999999999999999999987754
No 279
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=48.11 E-value=81 Score=27.92 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc---------------------CCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILS---------------------PHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaS---------------------AHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
....+.++++-+++.+||+|+-++- .+|-|+ ..++++..+++|++|++-+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 5666789999999999999988762 224454 6788888889999888654
No 280
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=48.08 E-value=1.6e+02 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=41.7
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcC-CCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSA-HRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.+|+++.-.+. ....++...+.+++.|+.....+.-. -........+++..+..+.+++|....
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~ 226 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGD 226 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 47888875433 34567777888899998754332211 112456777777777778888887653
No 281
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.06 E-value=67 Score=28.94 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=43.1
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+.+ .-+++...+.++++||.+++...++.-+.+++.+.++...+
T Consensus 33 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 33 LAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777776654 45577888999999999999999999999999999987643
No 282
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=48.04 E-value=74 Score=28.95 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=43.6
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+-. +++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 41 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 94 (299)
T PLN02516 41 GLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNA 94 (299)
T ss_pred eEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35677788766544 467778899999999999999999999999999987754
No 283
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=47.96 E-value=1.1e+02 Score=22.73 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCC-eEEEEecC
Q 029774 131 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIIIVGDG 179 (188)
Q Consensus 131 mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~Gv-kVIIAvAG 179 (188)
.+++...|+..+..+++..... ++...++....+.... +++|++-|
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GG 63 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGG 63 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEES
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcC
Confidence 3788999999999888877765 4444444442333333 55555544
No 284
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=47.93 E-value=29 Score=30.34 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.8
Q ss_pred CCeEEEEeccCCCH-----HHHHHHHHHHHHhCCCeeEEEEcCCC
Q 029774 115 TPIVGIIMESDSDL-----PVMNDAARTLSDFGVPYEIKILSPHQ 154 (188)
Q Consensus 115 ~pkVaIIMGS~SDl-----pimekA~~vLeefGIpyDVrVaSAHR 154 (188)
+.+|+|++|+.|+. ..++.+.+.|++.|. ++..+-.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~--~~~~~~~~~ 45 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKY--EVVPIGITK 45 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCC--EEEEEEECC
Confidence 45899999999994 556677788877765 444444444
No 285
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.92 E-value=1.3e+02 Score=24.66 Aligned_cols=64 Identities=8% Similarity=0.083 Sum_probs=39.6
Q ss_pred CeEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDSDLP--VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~SDlp--imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|+||..+.+|+. .++...+.|++.|+..... ...-.........++.....+.+++|..+..
T Consensus 136 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~ 201 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAE-ETFNAGDTDFSAQLTKIKAKNPDVIFLPGYY 201 (334)
T ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEE-EEecCCCCcHHHHHHHHHhcCCCEEEEcCch
Confidence 47999997765543 4556677788888754222 1211233456666667777788887776544
No 286
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=47.82 E-value=74 Score=21.46 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=27.4
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
.+..+- |.+.++...|++.||+|+.+=+. +.|+...++.
T Consensus 4 y~~~~C-p~C~~ak~~L~~~~i~~~~~di~--~~~~~~~~~~ 42 (72)
T TIGR02194 4 YSKNNC-VQCKMTKKALEEHGIAFEEINID--EQPEAIDYVK 42 (72)
T ss_pred EeCCCC-HHHHHHHHHHHHCCCceEEEECC--CCHHHHHHHH
Confidence 334443 89999999999999999775443 4555555554
No 287
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.79 E-value=52 Score=31.16 Aligned_cols=53 Identities=9% Similarity=-0.087 Sum_probs=48.4
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhC-CCeeEEEEcCCCChhHHHHHHHHHh
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFG-VPYEIKILSPHQNRKGALSYALSAK 167 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefG-IpyDVrVaSAHRtP~~l~eyak~ae 167 (188)
+.+|.+|.|-.-|+-.|......|++-+ ++.-+-+.+-||.++-+..|.+..+
T Consensus 3 ~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~ 56 (383)
T COG0381 3 MLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG 56 (383)
T ss_pred ceEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC
Confidence 3489999999999999999999999998 9999999999999999999997654
No 288
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=47.69 E-value=1.3e+02 Score=24.63 Aligned_cols=84 Identities=18% Similarity=0.049 Sum_probs=52.4
Q ss_pred ecccccceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHH----HHHHHh---CCCeeEEEEcCCCChhHHHHHHHH
Q 029774 93 VREPSTVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAA----RTLSDF---GVPYEIKILSPHQNRKGALSYALS 165 (188)
Q Consensus 93 ~~~~~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~----~vLeef---GIpyDVrVaSAHRtP~~l~eyak~ 165 (188)
+|+..-++.+...+|- +..+.+.|+..|.-| +-.++|. +.++.+ |+++++..+..+..++-+.+..+.
T Consensus 7 Gf~~~~~~r~~~~~~~----~~~~~~vilv~~~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d~~~~~~~v~~~ 81 (203)
T TIGR01884 7 GFDEKFIIRALMEIGI----KEEGDLVILVKSPIE-DGARRAVESLRAIISDLGGNLVEGTIKEIELKDVPSILRQMSDI 81 (203)
T ss_pred ccchHHHHHHHHhcCC----CccCcEEEEEcCCCc-hHHHHHHHHHHHHHHHhccCCCcceEEEEecCCHHHHHHHHHHH
Confidence 4555556666666652 111357777777744 3344444 444444 789999999999887777777655
Q ss_pred Hh-hCCCeEEEEecCcc
Q 029774 166 AK-ERGIKIIIVGDGVE 181 (188)
Q Consensus 166 ae-~~GvkVIIAvAGmA 181 (188)
.. ..+.+|+|..+|+-
T Consensus 82 i~~~~~~~v~vnlsgG~ 98 (203)
T TIGR01884 82 IKEEREPRVIINLSGGM 98 (203)
T ss_pred HHhcccCcEEEEcCCCc
Confidence 43 23345888888864
No 289
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.47 E-value=1.2e+02 Score=25.86 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhCCCeEEEE
Q 029774 158 GALSYALSAKERGIKIIIV 176 (188)
Q Consensus 158 ~l~eyak~ae~~GvkVIIA 176 (188)
+..++++.+++.|++.+++
T Consensus 167 ~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 167 DIVEIARAAEEAGADGLTL 185 (296)
T ss_pred hHHHHHHHHHHcCCCEEEE
Confidence 3445555555556665544
No 290
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.35 E-value=66 Score=30.02 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=44.3
Q ss_pred CeEEEEeccCCCHHH-HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLPV-MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlpi-mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+.|-.. ++...+.++++||.+++.-.+..-+-+++.+.++...+
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888888776655 77778899999999999999999899999999987744
No 291
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.23 E-value=68 Score=28.94 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=42.9
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~-SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+ ++.-+++...+.++++||.++..-.++.-+.+++.+.++...+
T Consensus 34 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (285)
T PRK14191 34 LAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNT 86 (285)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456666755 4455688889999999999999999999999999999987754
No 292
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=47.14 E-value=44 Score=22.60 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCh
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNR 156 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP 156 (188)
|.+.++.-+|+++|++|++.++-..+.+
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~~~~~ 30 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPLIPKG 30 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEETTTTB
T ss_pred hHhHHHHHHHHHhCCCCEEEEEeeecCc
Confidence 5788999999999999999998543333
No 293
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.01 E-value=93 Score=25.22 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=27.1
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
-.++..+..|.....+..+.+-..++ |--|+.+.. ++...+.++.+.+.|+.|+..
T Consensus 31 ~~~~~~~~~d~~~~~~~i~~~~~~~v--dgiii~~~~-~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 31 DVTWYGGALDAVKQVAAIENMASQGW--DFIAVDPLG-IGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCC--CEEEEcCCC-hHHhHHHHHHHHHCCCcEEEe
Confidence 44445555566655555555555554 334444432 233334444444445555444
No 294
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.97 E-value=1.5e+02 Score=24.17 Aligned_cols=13 Identities=15% Similarity=0.486 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhCC
Q 029774 131 MNDAARTLSDFGV 143 (188)
Q Consensus 131 mekA~~vLeefGI 143 (188)
.+.+.+.++++|+
T Consensus 18 ~~gi~~~a~~~g~ 30 (294)
T cd06316 18 VRGAKDEFAKLGI 30 (294)
T ss_pred HHHHHHHHHHcCC
Confidence 3344444555553
No 295
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=46.93 E-value=68 Score=27.98 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=41.1
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeE
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKI 173 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkV 173 (188)
.|....++.+.++.+.|++.|+++.+.+.--.-+.+++.++++.+.+.|++-
T Consensus 125 rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 125 AGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred cCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 4555557777788889999999988877666678889999998888888753
No 296
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=46.82 E-value=78 Score=24.85 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=34.4
Q ss_pred EeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCCh--hHHHHHHHHHhhCC
Q 029774 121 IMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNR--KGALSYALSAKERG 170 (188)
Q Consensus 121 IMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP--~~l~eyak~ae~~G 170 (188)
++|...+.+ ...++.+.|.+.|++..+++.--.-+. +++.++++..++.|
T Consensus 131 ~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 131 LYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred HHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 445444554 667788889999999888866543333 46888888777766
No 297
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=46.76 E-value=76 Score=25.87 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=37.3
Q ss_pred CCeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEEEEcCCCC--hhHHHHHHH
Q 029774 115 TPIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIKILSPHQN--RKGALSYAL 164 (188)
Q Consensus 115 ~pkVaIIMGS~SD--lpimekA~~vLeefGIpyDVrVaSAHRt--P~~l~eyak 164 (188)
.|.|+||+=.+-+ -.-.+.|.+.|+.-|+. ++..+|++.. -++|.+|++
T Consensus 90 ~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 90 KPVIGVITKIDLPSDDANIERAKKWLKNAGVK-EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCEEEEEECccCccchhhHHHHHHHHHHcCCC-CeEEEECCCCcCHHHHHHHHh
Confidence 4689999877666 77889999999999998 5677777654 456666653
No 298
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=46.73 E-value=1.3e+02 Score=25.81 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=39.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC--CCeeEEEE-cCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFG--VPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefG--IpyDVrVa-SAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.+|+||.-++.+...++...+.+++.| +.....-. +.. .-+.+...++..++.+.++||..
T Consensus 127 k~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~~-~~~d~~~~L~~ik~~~~~~iil~ 190 (382)
T cd06380 127 RKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDNVT-DEEEFLRLLEDLDRRKEKRIVLD 190 (382)
T ss_pred eEEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecCCC-cHHHHHHHHHHhhcccceEEEEE
Confidence 579999877777777888888888888 44332211 111 11356666777777778888764
No 299
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=46.63 E-value=1e+02 Score=27.36 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=43.3
Q ss_pred eEEEEeccC-C-CHHHHHHHHHHHHHhCCCeeEEEEcCCC----------ChhHHHHHHHHH--hhCCCeEEEEecCccC
Q 029774 117 IVGIIMESD-S-DLPVMNDAARTLSDFGVPYEIKILSPHQ----------NRKGALSYALSA--KERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~-S-DlpimekA~~vLeefGIpyDVrVaSAHR----------tP~~l~eyak~a--e~~GvkVIIAvAGmAA 182 (188)
+|+||.=|. - +.+..+.+.+.|+++|... +.+.|. .-+++.++.+.. .+. ++.|+++-|+-+
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v---~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg 78 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQV---ENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYG 78 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEE---eeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCC
Confidence 689998885 2 6788999999999999853 223331 234555665544 455 999999999854
No 300
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=46.54 E-value=1.4e+02 Score=23.48 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHhh--CCCeEEEEecCccC
Q 029774 155 NRKGALSYALSAKE--RGIKIIIVGDGVEA 182 (188)
Q Consensus 155 tP~~l~eyak~ae~--~GvkVIIAvAGmAA 182 (188)
.++.+.+.+++..+ .+++++|-.||...
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~ 93 (246)
T PRK12938 64 DWDSTKAAFDKVKAEVGEIDVLVNNAGITR 93 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 34444444443321 35789999888754
No 301
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=46.50 E-value=98 Score=27.21 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=45.7
Q ss_pred eEEEEeccCC----CHHHHHHHHHHHHHhCCCeeEEEEc-------CCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 117 IVGIIMESDS----DLPVMNDAARTLSDFGVPYEIKILS-------PHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~S----DlpimekA~~vLeefGIpyDVrVaS-------AHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
+|+||.=|.. +.+..+.+.+.|+.+|....+.=.. |.-.-+++.++.+...+..++.|+++-|+-+
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 78 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDD 78 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccC
Confidence 4777765543 2678999999999998754322111 1113456777777777888999999999854
No 302
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.32 E-value=86 Score=28.36 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=43.9
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+ ++.-+++...+.++++||.++....+..-+.+++.+.++...+
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567777765 4556688889999999999999999999999999999987754
No 303
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=46.28 E-value=1.5e+02 Score=26.09 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=41.1
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCC-CeEEEEec
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIIIVGD 178 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~G-vkVIIAvA 178 (188)
.+|+||.-++.. ...++...+.|++.|++..... ..-.....+.+.++..++.+ .+|||.+.
T Consensus 133 ~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~-~~~~~~~d~~~~L~~lk~~~~~~viv~~~ 196 (382)
T cd06371 133 AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVT-SMGPDEKGAREALKKVRSADRVRVVIMCM 196 (382)
T ss_pred eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEE-EecCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 479999665432 3478888889999998755432 11234567777777777766 58887643
No 304
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=46.06 E-value=1.2e+02 Score=25.48 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=53.0
Q ss_pred CeEEEEeccCCC--HHHHH-HHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 116 PIVGIIMESDSD--LPVMN-DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 116 pkVaIIMGS~SD--lpime-kA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
.+|++++...+| +..+. .+.+..+++|+.+.+....++-.+.+-.+-++.+-.++++.||..+.-+..+.
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~ 106 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALT 106 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhH
Confidence 469999998888 33344 46777888998778888888888887777777777788999988777665543
No 305
>PRK10329 glutaredoxin-like protein; Provisional
Probab=46.03 E-value=1.1e+02 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=28.3
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
+.+.+.. +.++.+...|++.||+|+..=+. ..|+...++.
T Consensus 5 lYt~~~C-p~C~~ak~~L~~~gI~~~~idi~--~~~~~~~~~~ 44 (81)
T PRK10329 5 IYTRNDC-VQCHATKRAMESRGFDFEMINVD--RVPEAAETLR 44 (81)
T ss_pred EEeCCCC-HhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHH
Confidence 3344444 99999999999999998766554 4565555544
No 306
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=45.96 E-value=62 Score=25.97 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=36.9
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHH
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA 166 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~a 166 (188)
|.||+- .+.+.+.++++++.=.|++.-++||++.+++.+.+++.
T Consensus 3 ILGsTG--SIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 3 ILGSTG--SIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREF 46 (129)
T ss_dssp EESTTS--HHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHH
T ss_pred EEcCCc--HHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHh
Confidence 445543 58899999999998789999999999999999888655
No 307
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=45.95 E-value=1.3e+02 Score=23.99 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=12.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefG 142 (188)
+++.+|+|..+.+ ....++.|-+-|
T Consensus 11 ~k~ilItGas~~I--G~~la~~l~~~G 35 (256)
T PRK06124 11 GQVALVTGSARGL--GFEIARALAGAG 35 (256)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcC
Confidence 4566777766544 334444443334
No 308
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=45.87 E-value=1.7e+02 Score=24.16 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=42.0
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
..|++++...+|. .+.+.+.+.+++.| |.+.+...+..++...++++...+.+++-+|..
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~ 122 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATMYK--YNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFM 122 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 4699999765552 23445566677776 577777778888888788777777778777764
No 309
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.84 E-value=33 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 170 VGkPla~lL~~~~----atVtv~hs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 216 (297)
T PRK14186 170 VGKPLALMLLAAN----ATVTIAHSRTQDLASITRE-----ADILVAAAGRPNLIG 216 (297)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 4556666665544 4666778888888888864 699999999886554
No 310
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.73 E-value=80 Score=28.41 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=43.3
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 28 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 81 (279)
T PRK14178 28 RLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNE 81 (279)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777776655 44577778999999999999999999999999999987643
No 311
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.73 E-value=74 Score=28.91 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=43.2
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+- -+++.-.+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567777766544 4577788899999999999999999999999999987754
No 312
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=45.67 E-value=1e+02 Score=28.08 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=50.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh---CCCeeEEEEcCCCChh-----------HHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDF---GVPYEIKILSPHQNRK-----------GALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeef---GIpyDVrVaSAHRtP~-----------~l~eyak~ae~~GvkVIIAv 177 (188)
...+|-|=..|.+.+++..+.++.+ |....+.++-.|..++ ++.+|.+..++.|+.|.|--
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~ 326 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRT 326 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 3577888888889999999999988 4578999999998754 36788888888899988753
No 313
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.50 E-value=77 Score=28.77 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=42.2
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 117 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 117 kVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.+.|..|.+. +.-+++...+.++++||.+++...+.+-+.+++.+.++...+
T Consensus 34 LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (297)
T PRK14167 34 LATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNA 86 (297)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566666554 455677888999999999999999999999999999987744
No 314
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=45.49 E-value=25 Score=29.60 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=36.4
Q ss_pred eEEEEeccCCCHH-----HHHHHHHHHHHhCCCeeEEEEcCCCC----hhHHHHHHHH--HhhCCCeEEEEec
Q 029774 117 IVGIIMESDSDLP-----VMNDAARTLSDFGVPYEIKILSPHQN----RKGALSYALS--AKERGIKIIIVGD 178 (188)
Q Consensus 117 kVaIIMGS~SDlp-----imekA~~vLeefGIpyDVrVaSAHRt----P~~l~eyak~--ae~~GvkVIIAvA 178 (188)
+|+|++|+.|+.- .+..+.+.|++.|.. +.++..... +.++.+.+.. .....+++++-.+
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~--v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 71 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYD--VYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVL 71 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCE--EEEEeecCCccccccchHHHHhhccccCCCCCEEEEec
Confidence 5999999999754 567888999998874 444444431 1122222211 1124578877754
No 315
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=45.48 E-value=64 Score=26.98 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCC-------hhHHHHHHHHHhhCCCeEEEE
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQN-------RKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRt-------P~~l~eyak~ae~~GvkVIIA 176 (188)
+.+.+..+++.=..|+-|++.|=. .++..+++..+-+.|+++||+
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 555666666665689999999976 567777888887889999985
No 316
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=45.41 E-value=53 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCC-ChhHHHHHHHH
Q 029774 128 LPVMNDAARTLSDFGVPYEIKILSPHQ-NRKGALSYALS 165 (188)
Q Consensus 128 lpimekA~~vLeefGIpyDVrVaSAHR-tP~~l~eyak~ 165 (188)
=+.+++|.+.|++.|++|+.+=+.... +.+++.++.+.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 368899999999999999888776554 45666666653
No 317
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=45.40 E-value=1.1e+02 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
+.+.+.++++|+ ++.+...- .++...++++.+..++++-+|.
T Consensus 21 ~gi~~~~~~~gy--~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii 62 (260)
T cd06304 21 EGLEKAEKELGV--EVKYVESV-EDADYEPNLRQLAAQGYDLIFG 62 (260)
T ss_pred HHHHHHHHhcCc--eEEEEecC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 344444555554 33333322 5555555555555555654444
No 318
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.36 E-value=76 Score=28.81 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=43.5
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+.+-. +++...+.++++||.+++.-++..-+.+++.+.++...+
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46777788665544 466778999999999999999999999999999987754
No 319
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=45.30 E-value=1.1e+02 Score=24.83 Aligned_cols=69 Identities=10% Similarity=-0.132 Sum_probs=40.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHH----HHhCCCeeEEEE--------cCC--CChhHHHHHHHHHhhCCCeEEEEecCc-
Q 029774 116 PIVGIIMESDSDLPVMNDAARTL----SDFGVPYEIKIL--------SPH--QNRKGALSYALSAKERGIKIIIVGDGV- 180 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vL----eefGIpyDVrVa--------SAH--RtP~~l~eyak~ae~~GvkVIIAvAGm- 180 (188)
++|.+|+||.+.-.+-...++.+ +..+......+. -.+ ..|+.+.++.+.... .+.+|-+.--
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~--aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAA--ADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHh--CCEEEEECCcc
Confidence 37999999999988766655555 444422111111 123 578888888877655 4555554432
Q ss_pred cCcCcC
Q 029774 181 EAHLSG 186 (188)
Q Consensus 181 AAHLPG 186 (188)
-+..||
T Consensus 79 n~s~pg 84 (184)
T COG0431 79 NGSYPG 84 (184)
T ss_pred CCCCCH
Confidence 334444
No 320
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.24 E-value=1.4e+02 Score=28.50 Aligned_cols=59 Identities=17% Similarity=0.070 Sum_probs=44.5
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEEEE
Q 029774 118 VGIIMESDSDL--------------PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 118 VaIIMGS~SDl--------------pimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVIIA 176 (188)
+.-+..+.||+ +.+.++.+.+++.|..+++..-.+.|+ |+.+.++++.+.+-|++.|.-
T Consensus 89 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 45556688998 455666677788998888888888887 677778888888878876543
No 321
>PRK08339 short chain dehydrogenase; Provisional
Probab=45.22 E-value=1.6e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=17.4
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
+.++++|+|+.+. +...+++.|-+.|.
T Consensus 7 ~~k~~lItGas~g--IG~aia~~l~~~G~ 33 (263)
T PRK08339 7 SGKLAFTTASSKG--IGFGVARVLARAGA 33 (263)
T ss_pred CCCEEEEeCCCCc--HHHHHHHHHHHCCC
Confidence 3568888888874 45556666666663
No 322
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.10 E-value=1.1e+02 Score=28.15 Aligned_cols=56 Identities=32% Similarity=0.470 Sum_probs=42.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
.|-||.-+.||.++..+|.+-+ .+|-.|.+.|.|..-|.. .++++.+.+ |+++++-
T Consensus 8 DVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~--~eIA~raae-GADlvlI 63 (290)
T COG4026 8 DVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTN--VEIAKRAAE-GADLVLI 63 (290)
T ss_pred eEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCch--HHHHHHhhc-cCCEEEE
Confidence 5999999999999998887766 488899999999865544 456655543 6655443
No 323
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.87 E-value=39 Score=30.41 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|...-++
T Consensus 170 VG~Pla~lL~~~~----atVt~chs~t~~l~~~~~~-----ADIvI~AvG~p~~i~ 216 (284)
T PRK14190 170 VGKPVGQLLLNEN----ATVTYCHSKTKNLAELTKQ-----ADILIVAVGKPKLIT 216 (284)
T ss_pred cHHHHHHHHHHCC----CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcCC
Confidence 4555555555443 4555678888888887764 699999999876543
No 324
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.86 E-value=81 Score=28.46 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=43.4
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|+.|.+.| .-+++...+.++++||.+++...+.+=+.+++.+.++...+
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777887655 45577778899999999999999999999999999987754
No 325
>PRK08303 short chain dehydrogenase; Provisional
Probab=44.80 E-value=1.5e+02 Score=25.41 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=15.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
.++++|+|..+ -+...+++.|-+-|.
T Consensus 8 ~k~~lITGgs~--GIG~aia~~la~~G~ 33 (305)
T PRK08303 8 GKVALVAGATR--GAGRGIAVELGAAGA 33 (305)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCCC
Confidence 45667777665 345555555555553
No 326
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=44.73 E-value=1.8e+02 Score=24.11 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
...|+++....++ ..+++.+.+.+++.| |++-+...+..++...++++......++-+|..
T Consensus 59 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~g--y~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 59 DKVVAVIVSRLDSPSENLAVSGMLPVFYTAG--YDPIIMESQFSPQLTNEHLSVLQKRNVDGVILF 122 (311)
T ss_pred CCEEEEEeCCcccccHHHHHHHHHHHHHHCC--CeEEEecCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 3469999864333 345778888888887 567777788889888888877777777766664
No 327
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=44.72 E-value=1.8e+02 Score=24.00 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=35.7
Q ss_pred eEEEEeccCCC----HHHHHHHHHHHHHhCCCeeEEEEcCCC-----------ChhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDSD----LPVMNDAARTLSDFGVPYEIKILSPHQ-----------NRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~SD----lpimekA~~vLeefGIpyDVrVaSAHR-----------tP~~l~eyak~ae~~GvkVIIAv 177 (188)
+|.+|.||.+- ...++.+.+.|++-|++++ ++..+. .++.+.++.+..++ ++.||-+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~--~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~ 73 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVY--HWNLQNFAPEDLLYARFDSPALKTFTEQLAQ--ADGLIVA 73 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEE--EEEccCCChHHHHhccCCCHHHHHHHHHHHH--CCEEEEE
Confidence 69999999976 5567778888887786543 333222 13356666666555 4555544
No 328
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=44.57 E-value=1.3e+02 Score=27.05 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEE
Q 029774 128 LPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 174 (188)
Q Consensus 128 lpimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVI 174 (188)
++.+.++.+..++.|....+..--+.|+ |+.+.++++.+.+-|++.|
T Consensus 112 l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 112 LERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 4556678888888998777766667776 7888889988888888754
No 329
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.47 E-value=1.1e+02 Score=25.43 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=20.5
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
++.++++|+|..+|--+...++..|-+-|.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga 34 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA 34 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 345788888888765566677777766664
No 330
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=44.28 E-value=94 Score=20.65 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHH
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 164 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak 164 (188)
..+=|.++++...|++++++|+..-+..+.....+.+.++
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 46 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQ 46 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHH
Confidence 5677899999999999999998777777777655555543
No 331
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=44.22 E-value=47 Score=30.07 Aligned_cols=62 Identities=6% Similarity=0.016 Sum_probs=36.8
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEE-EcCCCChhHHHHHHHHHhhC--CCeEEEEe
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKER--GIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrV-aSAHRtP~~l~eyak~ae~~--GvkVIIAv 177 (188)
.+|+||.-.+. ....++...+.+++.|+...... +........+.+.++..++. ++.|+|..
T Consensus 187 ~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~ 252 (472)
T cd06374 187 TYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCF 252 (472)
T ss_pred cEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEEE
Confidence 47999865433 23467888888999998754332 22233445566666666543 34555543
No 332
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.16 E-value=80 Score=28.54 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=43.2
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357777776654 44577788999999999999999999999999999987643
No 333
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.15 E-value=78 Score=28.56 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=43.6
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+ .-+++...+.++++||.++.....+.-+.+++.+.++...+
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356677776654 45577888999999999999999999999999999987754
No 334
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=44.01 E-value=25 Score=30.39 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=44.6
Q ss_pred cccccccccccceeecccccceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHH-HHhCCCeeE----------
Q 029774 79 SNGSATSTRKDYSSVREPSTVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTL-SDFGVPYEI---------- 147 (188)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vL-eefGIpyDV---------- 147 (188)
+.+..-|-|.||....+...+.+ ....- ... ..|.+.=+=|. ++.+..+.+.+.. +-..|+++.
T Consensus 45 ~~aDivE~RlD~l~~~~~~~~~~--~~~~l-~~~-~~p~I~T~R~~-~~~~~l~~a~~~~~d~vDIEl~~~~~~~~~~~~ 119 (229)
T PRK01261 45 SDKNLYEIRFDLFHDHSIESEPE--IISAL-NEM-DIDYIFTYRGV-DARKYYETAIDKMPPAVDLDINLIGKLEFRPRN 119 (229)
T ss_pred CCCCEEEEEeeccCCCChHHHHH--HHHHH-hhc-CCCEEEEEcCC-CHHHHHHHHHhhCCCEEEEEcccchhhhhhcCC
Confidence 34556678999987633322211 11100 011 22344433343 4555554444311 111233222
Q ss_pred --EEEcCCCCh--hHHHHHHHHHhhCCCeE
Q 029774 148 --KILSPHQNR--KGALSYALSAKERGIKI 173 (188)
Q Consensus 148 --rVaSAHRtP--~~l~eyak~ae~~GvkV 173 (188)
-|+|.| +| +++.++++.+.+-|+++
T Consensus 120 ~kvIvS~H-tp~~eeL~~~l~~m~~~gaDI 148 (229)
T PRK01261 120 TMLMVSYH-TNNSDNMPAILDIMNEKNPDY 148 (229)
T ss_pred CeEEEEeC-CCCHHHHHHHHHHHHHhCCCE
Confidence 488999 88 56777888887767654
No 335
>PLN02204 diacylglycerol kinase
Probab=43.92 E-value=77 Score=31.69 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=40.1
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHH---hhCCCeEEEEecC
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA---KERGIKIIIVGDG 179 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~a---e~~GvkVIIAvAG 179 (188)
.|..+.....+++...|+..|+.+++.+.-.- ....++++.+ +.++++.+||+-|
T Consensus 170 sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a---ghA~d~~~~~~~~~l~~~D~VVaVGG 227 (601)
T PLN02204 170 SGKGSGSRTWETVSPIFIRAKVKTKVIVTERA---GHAFDVMASISNKELKSYDGVIAVGG 227 (601)
T ss_pred CCCcchHHHHHHHHHHHHHcCCeEEEEEecCc---chHHHHHHHHhhhhccCCCEEEEEcC
Confidence 47777778888999999999998888776533 4445555433 3567898888766
No 336
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=43.91 E-value=1.1e+02 Score=28.17 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=48.2
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---------CC-----hhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---------QN-----RKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH---------Rt-----P~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
..+|+|=.+..+=..++......|+++|++ +.|...| +. |+.+.++.+.+.+.++++-|+.-|=
T Consensus 170 ~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~--v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD 247 (456)
T PRK15414 170 PLKLVINSGNGAAGPVVDAIEARFKALGAP--VELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGD 247 (456)
T ss_pred CCEEEEECCCCcchhhHHHHHHHHHhcCCC--eEEEEeecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 357999988888888998888889999984 4455444 22 2455666677778889999998775
Q ss_pred c
Q 029774 181 E 181 (188)
Q Consensus 181 A 181 (188)
+
T Consensus 248 a 248 (456)
T PRK15414 248 F 248 (456)
T ss_pred c
Confidence 4
No 337
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.87 E-value=1.6e+02 Score=23.27 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=5.4
Q ss_pred CCCHHHHHHHHHHH
Q 029774 125 DSDLPVMNDAARTL 138 (188)
Q Consensus 125 ~SDlpimekA~~vL 138 (188)
..|-.....+...+
T Consensus 38 ~~~~~~~~~~i~~~ 51 (277)
T cd06319 38 ENSAKKELENLRTA 51 (277)
T ss_pred CCCHHHHHHHHHHH
Confidence 33444333333333
No 338
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=43.83 E-value=88 Score=27.21 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCC------------CChhHHHHHHHHHhh
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFGVP-YEIKILSPH------------QNRKGALSYALSAKE 168 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefGIp-yDVrVaSAH------------RtP~~l~eyak~ae~ 168 (188)
..|.++.+.|+. |.+...++++.+++.|+. +|+.+.++| ..|+.+.++++...+
T Consensus 99 ~~p~i~si~G~~-~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 99 DKILIASIMCEY-NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred CCeEEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH
Confidence 356788888873 445666777777888876 689888887 357888888876653
No 339
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=43.79 E-value=1.3e+02 Score=23.29 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCCeeEEEEcCCCChhHHHHHHHHHhhC-CCeEEEEec
Q 029774 142 GVPYEIKILSPHQNRKGALSYALSAKER-GIKIIIVGD 178 (188)
Q Consensus 142 GIpyDVrVaSAHRtP~~l~eyak~ae~~-GvkVIIAvA 178 (188)
|.++++.+...+-.|+...+.++.+-++ +++++|...
T Consensus 38 g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 75 (299)
T cd04509 38 GRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPV 75 (299)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCC
Confidence 4456666666666676666666655544 666666543
No 340
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=43.64 E-value=36 Score=30.88 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
+.++.+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-+
T Consensus 179 VGkPla~lL~~~~----ATVtvchs~T~nl~~~~~~-----ADIvv~AvGk~~~i 224 (299)
T PLN02516 179 VGLPVSLLLLKAD----ATVTVVHSRTPDPESIVRE-----ADIVIAAAGQAMMI 224 (299)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Confidence 3455555554433 5677778888888888864 69999999996543
No 341
>PLN02837 threonine-tRNA ligase
Probab=43.64 E-value=1e+02 Score=30.08 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 107 GDSTGKNDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 107 g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
|+.+..-.+..|.||.-+..+.+.+.+..+.|.+-|+..++ . .. +.+. +=++.++..|+..+|.+.
T Consensus 508 g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~-~~-~slg---kkir~A~~~gip~~IiIG 573 (614)
T PLN02837 508 GDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-C-HG-ERLP---KLIRNAETQKIPLMAVVG 573 (614)
T ss_pred CCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-e-CC-CCHH---HHHHHHHHcCCCEEEEEc
Confidence 43333333446888887888889999999999999998887 3 32 3444 434455577876655554
No 342
>PRK07062 short chain dehydrogenase; Provisional
Probab=43.49 E-value=1.7e+02 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=15.6
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
+.++.+|+|+.+.+ ....++.|-+-|.
T Consensus 7 ~~k~~lItGas~gi--G~~ia~~l~~~G~ 33 (265)
T PRK07062 7 EGRVAVVTGGSSGI--GLATVELLLEAGA 33 (265)
T ss_pred CCCEEEEeCCCchH--HHHHHHHHHHCCC
Confidence 34678888877743 3445555544443
No 343
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=43.28 E-value=1.8e+02 Score=23.65 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=41.9
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
...|+++.-+.++ ....+.+.+.++++|+ ++.+......++.-.++++.....+++-+|..
T Consensus 35 ~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~ 98 (309)
T PRK11041 35 SRTILVIVPDICDPFFSEIIRGIEVTAAEHGY--LVLIGDCAHQNQQEKTFVNLIITKQIDGMLLL 98 (309)
T ss_pred CcEEEEEeCCCcCccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 3478888765433 3456778888999985 55555555667666778877777788866664
No 344
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=43.14 E-value=81 Score=21.46 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcC
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSP 152 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSA 152 (188)
+.+.++...|++.||+|++.-+..
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~~ 34 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCPK 34 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECCC
Confidence 688999999999999999876653
No 345
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=43.09 E-value=1e+02 Score=27.07 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-----CC----------ChhHHHHHHHHHhhCCCeEEEEe
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSP-----HQ----------NRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSA-----HR----------tP~~l~eyak~ae~~GvkVIIAv 177 (188)
-+.+.+++.++-+++.+||+|+-++-. ++ -| ...++++..+++|++|++.+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FP-dp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFP-DPKAMVRELHEMNAELMISI 86 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCC-CHHHHHHHHHHCCCEEEEEe
Confidence 356667889999999999998888874 33 12 35678888889999987644
No 346
>PRK06196 oxidoreductase; Provisional
Probab=42.87 E-value=1.6e+02 Score=24.92 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHH-----------------------HHHHHhh--C
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS-----------------------YALSAKE--R 169 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~e-----------------------yak~ae~--~ 169 (188)
++++++|+|+.+- +...++..|-+-|. . |+-.-|+++++.+ +++...+ .
T Consensus 25 ~~k~vlITGasgg--IG~~~a~~L~~~G~--~--Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGYSG--LGLETTRALAQAGA--H--VIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeCCCch--HHHHHHHHHHHCCC--E--EEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 3468899998874 56666666766664 2 3333455554433 3332222 4
Q ss_pred CCeEEEEecCcc
Q 029774 170 GIKIIIVGDGVE 181 (188)
Q Consensus 170 GvkVIIAvAGmA 181 (188)
+++++|-.||..
T Consensus 99 ~iD~li~nAg~~ 110 (315)
T PRK06196 99 RIDILINNAGVM 110 (315)
T ss_pred CCCEEEECCCCC
Confidence 579999999853
No 347
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=42.80 E-value=66 Score=21.47 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.4
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPH 153 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAH 153 (188)
+=|.+.=|.+.+|.+.|++.||+|+..-+..+
T Consensus 5 lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~ 36 (72)
T cd03029 5 LFTKPGCPFCARAKAALQENGISYEEIPLGKD 36 (72)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 33456778999999999999999977666543
No 348
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=42.77 E-value=63 Score=30.97 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=50.1
Q ss_pred ceeeeeccccccccccccceeecccccceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHH-HhCCCeeEEEE
Q 029774 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTLS-DFGVPYEIKIL 150 (188)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLe-efGIpyDVrVa 150 (188)
.+||+.+-|...|+-+.-+. ....| -+++|-...+-......+.++++ +-++-.+...+
T Consensus 54 ~~Pivsa~M~~vt~~~lA~A-----------ma~aG---------GiGfI~~~as~E~q~~~Irkvk~~~~gmi~dpvtV 113 (505)
T PLN02274 54 SIPCVSSPMDTVTESDMAIA-----------MAALG---------GIGIVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVK 113 (505)
T ss_pred CCCEeccCCcccchHHHHHH-----------HHhCC---------CeEEEcCCCCHHHHHHHHHHhhcccccccCCCeee
Confidence 48999999988865544322 22222 26666655554445555555553 23444567778
Q ss_pred cCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 151 SPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 151 SAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
++.-+..++.+++. +.++..++.+.
T Consensus 114 ~pd~tV~dA~~lm~---~~~~~~lpVvD 138 (505)
T PLN02274 114 SPSSTISSLDELKA---SRGFSSVCVTE 138 (505)
T ss_pred CCCCcHHHHHHHHH---hcCCceEEEEe
Confidence 88888888777653 44555555554
No 349
>PLN02540 methylenetetrahydrofolate reductase
Probab=42.72 E-value=92 Score=30.83 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.++-|..+.+++|++.-.++..-.|+...+.+.+..+.+.|++=|.|..|=.
T Consensus 46 Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDp 97 (565)
T PLN02540 46 TLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDP 97 (565)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4455555555679999999999999999999999999999999898988854
No 350
>PRK09072 short chain dehydrogenase; Provisional
Probab=42.51 E-value=1.8e+02 Score=23.43 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=9.6
Q ss_pred CCCeEEEEecCcc
Q 029774 169 RGIKIIIVGDGVE 181 (188)
Q Consensus 169 ~GvkVIIAvAGmA 181 (188)
..++++|..||..
T Consensus 79 ~~id~lv~~ag~~ 91 (263)
T PRK09072 79 GGINVLINNAGVN 91 (263)
T ss_pred CCCCEEEECCCCC
Confidence 3478888888864
No 351
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.38 E-value=89 Score=28.17 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=43.1
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.|- -+++...+.++++||.+++.-..++-+.+++.+.++...+
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567777766554 4577788899999999999999999999999999987743
No 352
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.30 E-value=43 Score=30.21 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-+.
T Consensus 169 VGkPla~lL~~~~----atVtichs~T~~l~~~~~~-----ADIvI~AvG~~~~i~ 215 (284)
T PRK14170 169 VGKPVAQLLLNEN----ATVTIAHSRTKDLPQVAKE-----ADILVVATGLAKFVK 215 (284)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccC
Confidence 4566666666544 4566668777788888864 699999999987654
No 353
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=42.27 E-value=1.5e+02 Score=26.42 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=42.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCee-EEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYE-IKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyD-VrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
.+|+||--++.|+..++...+.+++.|+... ..+-... .+.....+++.++.+.++||.
T Consensus 125 k~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~--~~d~~~~L~~ik~~~~~~iil 184 (371)
T cd06388 125 NRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFN--DASYRRLLEDLDRRQEKKFVI 184 (371)
T ss_pred eEEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCC--cHHHHHHHHHhcccccEEEEE
Confidence 4799999888889999999999999997643 2333332 346666667777767776664
No 354
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=42.02 E-value=1.6e+02 Score=26.52 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=45.3
Q ss_pred EEEEeccCCCHHHHHHHHH-HHHHh-CCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEE
Q 029774 118 VGIIMESDSDLPVMNDAAR-TLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~-vLeef-GIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVI 174 (188)
.-|..=|+|=-.+++.... +|.+| +++++.+..+.-|+++++.+.++.++.+..-||
T Consensus 5 ~~i~~VSDstGeTAe~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~ 63 (269)
T PRK05339 5 RHVFLVSDSTGETAETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVF 63 (269)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 3455557777888888776 67899 689999999999999999999998876544444
No 355
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=42.00 E-value=93 Score=23.29 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=30.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCh
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR 156 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP 156 (188)
.+|+|+.....++.-+-...+.|+.-| +++.++|.+..|
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~--~~v~vvs~~~~~ 40 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAG--ANVKVVAPTLGG 40 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCC--CEEEEEecCcCc
Confidence 368888888777777778888887665 688888887654
No 356
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=42.00 E-value=83 Score=27.50 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=40.8
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEE
Q 029774 123 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 123 GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVI 174 (188)
+....++.+.++.+.|.+.|+++.+.+.--.-+.+++.++++.+++.|++.+
T Consensus 138 ~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~g~~~~ 189 (370)
T PRK13758 138 CGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEKDFKFL 189 (370)
T ss_pred CCCccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHcCCCeE
Confidence 4556788899999999999999888766555577788888888888887644
No 357
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=41.98 E-value=1.8e+02 Score=23.42 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=15.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
.++.+|+|+.+. +...+++.|-+.|.
T Consensus 7 ~k~~lItGa~~g--IG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTG--LGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCCh--HHHHHHHHHHHCCC
Confidence 456677777663 35556666666553
No 358
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.97 E-value=48 Score=29.91 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
+.++.+..|.+=|.--...|...|.....+.++.++ ++++|+++|...-+
T Consensus 169 VG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~-----ADIVI~AvG~p~li 218 (286)
T PRK14184 169 VGKPLALMLGAPGKFANATVTVCHSRTPDLAEECRE-----ADFLFVAIGRPRFV 218 (286)
T ss_pred chHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcC
Confidence 344455555431110136788889988888888864 69999999876543
No 359
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.94 E-value=35 Score=30.33 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=24.9
Q ss_pred CeEEEE--eccCCCHHHHHHHHHHHHHhCCCeeEE
Q 029774 116 PIVGII--MESDSDLPVMNDAARTLSDFGVPYEIK 148 (188)
Q Consensus 116 pkVaII--MGS~SDlpimekA~~vLeefGIpyDVr 148 (188)
.+|+|+ .+.....+.++++.+.|++.|+++.+.
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~ 39 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD 39 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 368888 555666677889999999999876553
No 360
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=41.92 E-value=1.2e+02 Score=25.45 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=45.5
Q ss_pred CCCeEEEEeccCCCHHH---HHHHHHHHHHhCCC----eeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 114 DTPIVGIIMESDSDLPV---MNDAARTLSDFGVP----YEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpi---mekA~~vLeefGIp----yDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
...+++||.+--.|.-+ .+.|.+.|++.|++ ..++|=+|.=.|--..++++ ...++-+||.
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~---~~~yDaiIaL 76 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAK---TGRYAAIVAA 76 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 33589999988877644 77899999999986 34567778888877777764 3348888875
No 361
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.79 E-value=1e+02 Score=27.89 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=42.6
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.+ .-+++...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777776654 44567778999999999999999999999999999977643
No 362
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=41.68 E-value=1.9e+02 Score=28.53 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=50.0
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVa---SAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
+.-|.=+-+|++-++.+.+..++.|...+.-|. |+--+++.+.++++.+++-|++ .|+++-+++.|
T Consensus 113 ~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad-~i~i~Dt~G~l 181 (593)
T PRK14040 113 VFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD-SLCIKDMAGLL 181 (593)
T ss_pred EEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCC-EEEECCCCCCc
Confidence 333445889999999999999999987655554 4433789999999999888987 56676666554
No 363
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.65 E-value=1.5e+02 Score=23.55 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=41.0
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCe-eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDSD---LPVMNDAARTLSDFGVPY-EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~SD---lpimekA~~vLeefGIpy-DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|+++.|.... ..-.+.-.+.|++.|+++ +..+...+-+.+...+.++..-..++++||+....
T Consensus 123 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~ 191 (273)
T cd06292 123 RRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTAIVAASDL 191 (273)
T ss_pred ceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCEEEEcCcH
Confidence 578888875432 233556677888888875 34455556666666665555433348888887653
No 364
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.59 E-value=17 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=28.9
Q ss_pred CeEEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEcCCC
Q 029774 116 PIVGIIMES--DSDLPVMNDAARTLSDFGVPYEIKILSPHQ 154 (188)
Q Consensus 116 pkVaIIMGS--~SDlpimekA~~vLeefGIpyDVrVaSAHR 154 (188)
.+|.+++|+ .|-+ .++++.+.+++.|+++++.-.+...
T Consensus 4 ~~ILl~C~~G~sSS~-l~~k~~~~~~~~gi~~~v~a~~~~~ 43 (95)
T TIGR00853 4 TNILLLCAAGMSTSL-LVNKMNKAAEEYGVPVKIAAGSYGA 43 (95)
T ss_pred cEEEEECCCchhHHH-HHHHHHHHHHHCCCcEEEEEecHHH
Confidence 467788764 3445 7799999999999998887777544
No 365
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=41.55 E-value=49 Score=24.45 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=31.3
Q ss_pred ecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCC
Q 029774 102 EENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTLSDFGVP 144 (188)
Q Consensus 102 ~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLeefGIp 144 (188)
+|-.||.....+..-.|.+++++...-+.+.++.+.+++.|.+
T Consensus 49 ~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~ 91 (153)
T cd05009 49 GEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARGAK 91 (153)
T ss_pred HHhccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHcCCE
Confidence 5567877554444445777777777677899999999999875
No 366
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.45 E-value=2e+02 Score=27.27 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=50.8
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVa---SAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
.+.-|.-+-||..-++++.+..++.|...++.+. +.--+++.+.++++.+.+-|++. |+++-+++.|
T Consensus 111 d~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~-I~i~Dt~G~l 180 (448)
T PRK12331 111 DIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS-ICIKDMAGIL 180 (448)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCCC
Confidence 4555666888999999999999999987655443 33446788999999998889874 7777776654
No 367
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.38 E-value=1.1e+02 Score=27.87 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=42.8
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.++.|..|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNN 87 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777776654 44567778999999999999999999999999999987754
No 368
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=41.30 E-value=1.3e+02 Score=26.65 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc-------------CCCChhHHHHHHHHHhhCCCeEEE
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILS-------------PHQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaS-------------AHRtP~~l~eyak~ae~~GvkVII 175 (188)
+.+.+++.++-+++.|||+|+-++. ..|-|+ ..++++..+++|++++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~ 82 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPD-PKELIKELHEQGFKVVT 82 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCC-HHHHHHHHHHCCCEEEE
Confidence 5677888999999999999998887 346664 46788888889998864
No 369
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.29 E-value=1.8e+02 Score=23.05 Aligned_cols=47 Identities=9% Similarity=0.129 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
...+.+.+.++++|....+.. .....+...++.+...+.+++.||..
T Consensus 19 ~~~~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiii~ 65 (268)
T cd06277 19 EIYRAIEEEAKKYGYNLILKF--VSDEDEEEFELPSFLEDGKVDGIILL 65 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEEe--CCCChHHHHHHHHHHHHCCCCEEEEe
Confidence 334455555666654333332 22233333344444444455555543
No 370
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=41.28 E-value=1.4e+02 Score=27.21 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=42.6
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEE
Q 029774 118 VGIIMESDSDL--------------PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 174 (188)
Q Consensus 118 VaIIMGS~SDl--------------pimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVI 174 (188)
..-+..+.||. +.+.++.+.+++.|....+..--+.|+ |+.+.++++.+.+-|++.|
T Consensus 91 ~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I 162 (378)
T PRK11858 91 AVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRV 162 (378)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 44455588996 777788888889998766665456665 7888889988888888654
No 371
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=41.24 E-value=98 Score=23.61 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.-....|+++|..... +.-+.-.++.+.+.++.+-++ ++++|..-|.+
T Consensus 22 ~~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g 69 (133)
T cd00758 22 PALEALLEDLGCEVIY-AGVVPDDADSIRAALIEASRE-ADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHHCCCEEEE-eeecCCCHHHHHHHHHHHHhc-CCEEEECCCCC
Confidence 3455568889965422 223466788888888766554 88888876654
No 372
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.81 E-value=1.7e+02 Score=26.78 Aligned_cols=60 Identities=7% Similarity=0.080 Sum_probs=47.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hhHHHHHHHHHhhCCCeEEEE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt---------P~~l~eyak~ae~~GvkVIIA 176 (188)
...+|=|=..+.+.+++.++.|+.++..+.+.++-.|.. ++++.++.+..++.|+.|.|=
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 356677878888899999999998865578888888863 456777777778889988875
No 373
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=40.71 E-value=1.7e+02 Score=22.77 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 131 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 131 mekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
.+.+.+.+++.|+ ++.+...-..++...++++.....+++.+|.
T Consensus 18 ~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii 61 (267)
T cd06284 18 LKGIEDEAREAGY--GVLLGDTRSDPEREQEYLDLLRRKQADGIIL 61 (267)
T ss_pred HHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 3444445555553 3333333344444444454444444554444
No 374
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=40.70 E-value=1.5e+02 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=13.5
Q ss_pred eEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 146 EIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 146 DVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
++.+.++.-.++.-.++++.+.+.+++.||.
T Consensus 30 ~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi 60 (302)
T TIGR02634 30 KVFVQSANGNEAKQISQIENLIARGVDVLVI 60 (302)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3334444444444444444444444444443
No 375
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.68 E-value=43 Score=30.33 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-|++.+..|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 169 VGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~-----ADIvIsAvGkp~~i~ 219 (293)
T PRK14185 169 VGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLE-----ADIIIAALGQPEFVK 219 (293)
T ss_pred chHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 567777777766654567788889888888888864 699999999987654
No 376
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=40.65 E-value=52 Score=25.31 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
+++.+.|+++||+|++.-...-++.+++.+..
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~ 33 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIR 33 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHh
Confidence 56788899999999997655555666555554
No 377
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=40.55 E-value=64 Score=24.22 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
..+=+.++++.-+|.+-||+|++.-+.....|+.+.++-
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~n 57 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLA 57 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhC
Confidence 345589999999999999999999888888887766544
No 378
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.43 E-value=1.8e+02 Score=22.94 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEE
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 175 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVII 175 (188)
+.+.+.++++|.. +.+......++...++++.+.+.+++-+|
T Consensus 19 ~gi~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgii 60 (265)
T cd06285 19 EGIEEAAAERGYS--TFVANTGDNPDAQRRAIEMLLDRRVDGLI 60 (265)
T ss_pred HHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444444444432 33334444455444555444444454443
No 379
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=40.39 E-value=1e+02 Score=27.20 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=40.0
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEE
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVI 174 (188)
.|....++.+.++.+.|++.|+++.+.+.---.+.+++.++++.+.+.|++.+
T Consensus 134 rg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 134 AGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred cCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEE
Confidence 45444577777888899999998877765444577888888888888888654
No 380
>PRK07677 short chain dehydrogenase; Provisional
Probab=40.25 E-value=1.6e+02 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHhh--CCCeEEEEecCcc
Q 029774 155 NRKGALSYALSAKE--RGIKIIIVGDGVE 181 (188)
Q Consensus 155 tP~~l~eyak~ae~--~GvkVIIAvAGmA 181 (188)
.++.+.+++++..+ ..++++|-.||..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 61 NPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred CHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 45556565544422 3478888888753
No 381
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.16 E-value=1.3e+02 Score=26.08 Aligned_cols=50 Identities=8% Similarity=0.125 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcC----------------------CCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSP----------------------HQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSA----------------------HRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
+...+++.++-+++.|||+|+-++-. +|-|+ ..+++++.+++|+++++-+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEe
Confidence 56678999999999999999988832 23343 5788888889999988754
No 382
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.15 E-value=48 Score=29.82 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|+..+.+.++.++ ++++|+++|...-+.
T Consensus 169 VGkPla~lL~~~~----atVt~chs~T~nl~~~~~~-----ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 169 VGRPMATMLLNAG----ATVSVCHIKTKDLSLYTRQ-----ADLIIVAAGCVNLLR 215 (282)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccC
Confidence 4566666665433 5677889888888888864 699999999876553
No 383
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=40.02 E-value=1.7e+02 Score=23.04 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=9.2
Q ss_pred CCeEEEEecCcc
Q 029774 170 GIKIIIVGDGVE 181 (188)
Q Consensus 170 GvkVIIAvAGmA 181 (188)
.++++|..||-.
T Consensus 80 ~id~li~~ag~~ 91 (248)
T PRK06947 80 RLDALVNNAGIV 91 (248)
T ss_pred CCCEEEECCccC
Confidence 478999888853
No 384
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=39.86 E-value=40 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEE
Q 029774 125 DSDLPVMNDAARTLSDFGVPYEIK 148 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGIpyDVr 148 (188)
..|.+.++.....|.+|||...+.
T Consensus 28 ~~s~~ll~~v~~lL~~lGi~~~i~ 51 (77)
T PF14528_consen 28 SKSKELLEDVQKLLLRLGIKASIY 51 (77)
T ss_dssp ES-HHHHHHHHHHHHHTT--EEEE
T ss_pred ECCHHHHHHHHHHHHHCCCeeEEE
Confidence 578899999999999999987555
No 385
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=39.79 E-value=1e+02 Score=24.97 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc------------CCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILS------------PHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaS------------AHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+.+++...+.|++.|+.+.+---. -++..+.+.+=++.+.+.++++||.+=--
T Consensus 28 ~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~N 93 (189)
T TIGR02883 28 TLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLN 93 (189)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecC
Confidence 4678899999999999875432221 12233456666666777789999987433
No 386
>PRK08703 short chain dehydrogenase; Provisional
Probab=39.77 E-value=1.4e+02 Score=23.56 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=9.3
Q ss_pred CCeEEEEecCcc
Q 029774 170 GIKIIIVGDGVE 181 (188)
Q Consensus 170 GvkVIIAvAGmA 181 (188)
.++++|-.||..
T Consensus 87 ~id~vi~~ag~~ 98 (239)
T PRK08703 87 KLDGIVHCAGYF 98 (239)
T ss_pred CCCEEEEecccc
Confidence 478898888864
No 387
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.73 E-value=1.3e+02 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=16.0
Q ss_pred CChhHHHHHHHHHhh--CCCeEEEEecCcc
Q 029774 154 QNRKGALSYALSAKE--RGIKIIIVGDGVE 181 (188)
Q Consensus 154 RtP~~l~eyak~ae~--~GvkVIIAvAGmA 181 (188)
..++.+.++++...+ ..++++|..||..
T Consensus 68 ~~~~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (260)
T PRK06603 68 TNPKSISNLFDDIKEKWGSFDFLLHGMAFA 97 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEEccccC
Confidence 344555555544332 3378888888753
No 388
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=39.48 E-value=2e+02 Score=27.61 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVa---SAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
.+.-|.-+-||+.-++.+.+..++.|...+..+. ++=-+++.+.++++.+.+-|++ .|+++-+++.|
T Consensus 110 d~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad-~I~i~Dt~G~l 179 (467)
T PRK14041 110 DIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVD-SICIKDMAGLL 179 (467)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EEEECCccCCc
Confidence 4666677899999999999999999987664443 2222568899999988888987 47777776654
No 389
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=39.13 E-value=1.6e+02 Score=25.40 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC---------------CCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSP---------------HQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSA---------------HRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.+.+.+++.++-+++.|||+|+-++-. .|-|+ ..+++++.++.|+++++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEec
Confidence 456667888899999999988766552 23344 57888888899999888653
No 390
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=39.05 E-value=1.9e+02 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhCC
Q 029774 130 VMNDAARTLSDFGV 143 (188)
Q Consensus 130 imekA~~vLeefGI 143 (188)
..+.+.+.+...++
T Consensus 44 ~~~~~~~~l~~~~v 57 (270)
T cd01545 44 LAERVRALLQRSRV 57 (270)
T ss_pred HHHHHHHHHHHCCC
Confidence 33444444444444
No 391
>PLN02530 histidine-tRNA ligase
Probab=38.99 E-value=1.4e+02 Score=28.03 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=39.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
..|.|+.-+...+..+.+++..|.+-|+..++-..+ +..++. ++.|++.|++.+|.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~--~~l~k~---ik~A~k~g~~~ivii 458 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP--KKLKWV---FKHAERIGAKRLVLV 458 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--CCHHHH---HHHHHHCCCCEEEEE
Confidence 458888767777888999999999999988776443 334444 445556677544443
No 392
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.97 E-value=38 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=24.4
Q ss_pred eEEEE--eccCCCHHHHHHHHHHHHHhCCCeeEE
Q 029774 117 IVGII--MESDSDLPVMNDAARTLSDFGVPYEIK 148 (188)
Q Consensus 117 kVaII--MGS~SDlpimekA~~vLeefGIpyDVr 148 (188)
+|+|+ .|...-.+..+++.+.|++.|+.+.+.
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 58888 455666777888999999999876653
No 393
>PRK03972 ribosomal biogenesis protein; Validated
Probab=38.97 E-value=1.7e+02 Score=25.66 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=40.9
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 112 KNDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 112 ~~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
.+.+| ..|.++-.++....++|....+++|++| |---|++-+ ++.. +.+.+.++++.|---|+
T Consensus 102 s~~~p-~iItts~kt~~g~~~~Ak~lA~eLgi~y---V~R~k~Sl~---~L~~---~~~~d~vLVV~~~~~~~ 164 (208)
T PRK03972 102 REDMP-LVITTAKRVGLDHMAFAQVFAELTGGKF---VPRGGKSLQ---DIAD---KYNTDVLGVIERHPRGM 164 (208)
T ss_pred ccccc-EEEEcCCCCCHHHHHHHHHHHHHhCCce---eCcCCcCHH---HHHh---hhcCceEEEEecCCCce
Confidence 33344 4688899999999999999999999999 223344444 4432 22345555555544433
No 394
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.78 E-value=58 Score=28.93 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=36.1
Q ss_pred CeEEEEe--ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIM--ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIM--GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
.+|++|. |+....+.++++.+.|++.|+.+.+.....+..+ ...+. ....++++++|++-|
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~--~~~~~-~~~~~~~d~vi~~GG 66 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNP--YPVFL-ASASELIDLAIVLGG 66 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhcc--ccchh-hccccCcCEEEEECC
Confidence 3588874 4444457788999999999987666554443222 11222 222335777777654
No 395
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=38.73 E-value=2.5e+02 Score=23.97 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhh--CCCeEEEEecCc
Q 029774 156 RKGALSYALSAKE--RGIKIIIVGDGV 180 (188)
Q Consensus 156 P~~l~eyak~ae~--~GvkVIIAvAGm 180 (188)
++.+.++++...+ .+++++|..||.
T Consensus 65 ~~~v~~~~~~~~~~~~~iD~lI~nAG~ 91 (314)
T TIGR01289 65 LDSVRQFVQQFRESGRPLDALVCNAAV 91 (314)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 4455555554432 347899988885
No 396
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=38.72 E-value=43 Score=31.78 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=37.7
Q ss_pred eeEEEEcCCCChhHHHHHHHHHhhCCC-eEEEEecCccCcCcCC
Q 029774 145 YEIKILSPHQNRKGALSYALSAKERGI-KIIIVGDGVEAHLSGT 187 (188)
Q Consensus 145 yDVrVaSAHRtP~~l~eyak~ae~~Gv-kVIIAvAGmAAHLPGV 187 (188)
..+.++|||..++.-..+.+..+..|+ .++++++|..+.|.=|
T Consensus 264 ~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V 307 (373)
T KOG2835|consen 264 VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIV 307 (373)
T ss_pred eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccce
Confidence 689999999999999999988877786 8899999998887643
No 397
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=38.69 E-value=77 Score=21.40 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.6
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSP 152 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSA 152 (188)
+-+..+ +-..++...|++.|++|++..+..
T Consensus 4 Ly~~~~--~~~~~v~~~l~~~gl~~~~~~~~~ 33 (81)
T cd03048 4 LYTHGT--PNGFKVSIMLEELGLPYEIHPVDI 33 (81)
T ss_pred EEeCCC--CChHHHHHHHHHcCCCcEEEEecC
Confidence 445554 888999999999999999988774
No 398
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=38.68 E-value=87 Score=18.88 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhH
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKG 158 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~ 158 (188)
+.++++...|+..|++|+...+........
T Consensus 10 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 39 (71)
T cd00570 10 PRSLRVRLALEEKGLPYELVPVDLGEGEQE 39 (71)
T ss_pred ccHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Confidence 678899999999999999988876554443
No 399
>PRK06720 hypothetical protein; Provisional
Probab=38.61 E-value=2e+02 Score=22.95 Aligned_cols=50 Identities=6% Similarity=0.072 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh--CCCeEEEEecCccC
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE--RGIKIIIVGDGVEA 182 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~--~GvkVIIAvAGmAA 182 (188)
+++.+.+...+..... +..=+..++.+.++++...+ .+++++|.-||..-
T Consensus 54 ~~~~~~l~~~~~~~~~-~~~Dl~~~~~v~~~v~~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 54 QATVEEITNLGGEALF-VSYDMEKQGDWQRVISITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHHHHHhcCCcEEE-EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 3333444444433222 33455677777777755432 35789999998643
No 400
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=38.60 E-value=1.4e+02 Score=20.90 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=33.4
Q ss_pred EEEEeccCC--CH-HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 118 VGIIMESDS--DL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 118 VaIIMGS~S--Dl-pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
+.+--||.. .+ ..+++....|++..-.+++.++-.++....+.+.++....+|++-+|+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVI 64 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEE
Confidence 334445543 33 255666666654322345666666664555667777777778755554
No 401
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=38.45 E-value=1e+02 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
+...+.+++.+.+++- .+++.+.-.....+.+.+.++.+.++|++|.+.+-|
T Consensus 7 g~~~I~~~i~elI~~A--e~eI~is~~~~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 7 GRETILERIRELIENA--ESEIYISIPPEFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp SHHHHHHHHHHHHHC---SSEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CHHHHHHHHHHHHHHh--heEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 3445677777887765 457777777777788888888899999999999988
No 402
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=38.29 E-value=1.5e+02 Score=25.98 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhCC-CeeEEEEc-CCCChhHHHHHHHHHhhCCCeEE
Q 029774 125 DSDLPVMNDAARTLSDFGV-PYEIKILS-PHQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 125 ~SDlpimekA~~vLeefGI-pyDVrVaS-AHRtP~~l~eyak~ae~~GvkVI 174 (188)
..+++.+.+..+.+.+.|+ +..+...- ..-+.+++.++++.+.+.|+++.
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 3568888888899999999 77776443 34688999999999988888764
No 403
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=38.25 E-value=1.4e+02 Score=26.86 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-------------CCChhHHHHHHHHHhhCCCeEEEE
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSP-------------HQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSA-------------HRtP~~l~eyak~ae~~GvkVIIA 176 (188)
.+.+.+++.++.+++.+||+|+-++.. .|-|+ ..+++++..+.|+++++-
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~ 83 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTN 83 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCC-HHHHHHHHHHCCCeEEEE
Confidence 355668899999999999998887754 55565 467888888999987653
No 404
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.14 E-value=1.9e+02 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=13.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefG 142 (188)
+..+|+|..+ .+....+..|-+.|
T Consensus 6 ~~ilI~Gasg--~iG~~la~~l~~~g 29 (247)
T PRK05565 6 KVAIVTGASG--GIGRAIAELLAKEG 29 (247)
T ss_pred CEEEEeCCCc--HHHHHHHHHHHHCC
Confidence 4667777665 34455555554444
No 405
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=38.10 E-value=1.9e+02 Score=26.59 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCCeEEEEecc----------------CCCHHHHHHHHHHHHHhCCCe----eEEEEcCCCChhHHHHH
Q 029774 114 DTPIVGIIMES----------------DSDLPVMNDAARTLSDFGVPY----EIKILSPHQNRKGALSY 162 (188)
Q Consensus 114 ~~pkVaIIMGS----------------~SDlpimekA~~vLeefGIpy----DVrVaSAHRtP~~l~ey 162 (188)
++..|++||-+ ..-...+.++.+.+.++||++ -.-+--.-|.|+++..+
T Consensus 36 ~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~L 104 (271)
T KOG1602|consen 36 MPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGL 104 (271)
T ss_pred CcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHH
Confidence 44458888844 344566778888888999984 22222255666665543
No 406
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=38.05 E-value=1.2e+02 Score=26.05 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=36.7
Q ss_pred CCeEEEEeccCCC-----HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCC-eEEEEecCccC
Q 029774 115 TPIVGIIMESDSD-----LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIIIVGDGVEA 182 (188)
Q Consensus 115 ~pkVaIIMGS~SD-----lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~Gv-kVIIAvAGmAA 182 (188)
+.+|+|++|+.|- +.-++.+.+.|++.|... ..+-.+. .+.+. ......+ .||++.-|..+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~--~~~~~~~-~~~~~----~l~~~~~d~vf~~lhG~~g 69 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDA--VGVDASG-KELVA----KLLELKPDKCFVALHGEDG 69 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEE--EEEcCCc-hhHHH----HhhccCCCEEEEeCCCCCC
Confidence 3479999999998 456778888898888754 3333332 12222 2222344 46666655433
No 407
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.04 E-value=53 Score=29.57 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|.....+.++.++ ++++|+++|...-+.
T Consensus 168 VGkPla~lL~~~~----atVtichs~T~~l~~~~~~-----ADIvI~AvG~p~~i~ 214 (282)
T PRK14169 168 VGRPLAGLMVNHD----ATVTIAHSKTRNLKQLTKE-----ADILVVAVGVPHFIG 214 (282)
T ss_pred chHHHHHHHHHCC----CEEEEECCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 4566666666544 4566678766778887764 699999999876543
No 408
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=37.95 E-value=1e+02 Score=22.35 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-CCChhHHHHHHHH
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALS 165 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSA-HRtP~~l~eyak~ 165 (188)
+.=+.+++|.+.|++.||+|+..=+.. .-+.+++.++...
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 345789999999999999997776653 4556677777654
No 409
>PLN02780 ketoreductase/ oxidoreductase
Probab=37.92 E-value=1.5e+02 Score=25.70 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=7.7
Q ss_pred CCeEEEEecCcc
Q 029774 170 GIKIIIVGDGVE 181 (188)
Q Consensus 170 GvkVIIAvAGmA 181 (188)
+++++|-.||..
T Consensus 132 didilVnnAG~~ 143 (320)
T PLN02780 132 DVGVLINNVGVS 143 (320)
T ss_pred CccEEEEecCcC
Confidence 345777777764
No 410
>PHA03050 glutaredoxin; Provisional
Probab=37.87 E-value=1.5e+02 Score=22.39 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=34.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCC---CeeEEEEcC-CCChhHHHHHHHHHhhCC-CeEEEE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGV---PYEIKILSP-HQNRKGALSYALSAKERG-IKIIIV 176 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGI---pyDVrVaSA-HRtP~~l~eyak~ae~~G-vkVIIA 176 (188)
+|.|. |.+.=|.+.+|...|+++|| +|++.=+.. |..++...++.+...... +.|||.
T Consensus 14 ~V~vy--s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 14 KVTIF--VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred CEEEE--ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 45555 55668999999999999999 565544443 223333333333222223 355553
No 411
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.83 E-value=2.2e+02 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCC-hhHHHHHHHHHhhCCCeEE
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 174 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRt-P~~l~eyak~ae~~GvkVI 174 (188)
+.+.++.+..++.|....+...-+.|. |+.+.++++.+.+-|++.|
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRI 158 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEE
Confidence 446677777788898888777777776 6788888888887787653
No 412
>PRK00170 azoreductase; Reviewed
Probab=37.81 E-value=2e+02 Score=22.64 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=23.5
Q ss_pred CeEEEEeccCCC-----HHHHHHHHHHHHHh--CCCeeEE
Q 029774 116 PIVGIIMESDSD-----LPVMNDAARTLSDF--GVPYEIK 148 (188)
Q Consensus 116 pkVaIIMGS~SD-----lpimekA~~vLeef--GIpyDVr 148 (188)
.+|.||.||..- ...++.+.+.|++- |..+++.
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~ 41 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVR 41 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 479999999744 35677788888887 6654443
No 413
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.73 E-value=1.6e+02 Score=21.59 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=46.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHh--hCCCeEEEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK--ERGIKIIIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae--~~GvkVIIAvAGmAA 182 (188)
.+.|+.+...|.+..++...-|+..+..+.+-- .=-..++.+.+++++.. ...++++|..||...
T Consensus 26 ~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 26 RVVILTSRSEDSEGAQELIQELKAPGAKITFIE-CDLSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE-SETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred eEEEEeeeccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 566666666678888888888888884333322 22467888888887765 345799999999865
No 414
>PRK01355 azoreductase; Reviewed
Probab=37.68 E-value=2.2e+02 Score=23.10 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=24.8
Q ss_pred CeEEEEeccCC--C----HHHHHHHHHHHHHhCCCeeEEEEc
Q 029774 116 PIVGIIMESDS--D----LPVMNDAARTLSDFGVPYEIKILS 151 (188)
Q Consensus 116 pkVaIIMGS~S--D----lpimekA~~vLeefGIpyDVrVaS 151 (188)
++|.||.||.. . ...++...+.+++-+-.+++.++.
T Consensus 2 ~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~d 43 (199)
T PRK01355 2 SKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILD 43 (199)
T ss_pred CeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 48999999997 2 356777888887755444444443
No 415
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=37.62 E-value=79 Score=24.84 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHH
Q 029774 129 PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALS 165 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ 165 (188)
..+++|.+.|++.||+|+++ +..--=+.+++.++++.
T Consensus 12 st~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 12 ANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred HHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 57899999999999999877 44444566777777764
No 416
>PRK10638 glutaredoxin 3; Provisional
Probab=37.57 E-value=64 Score=22.36 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=29.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHH
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 164 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak 164 (188)
+|-|.+ .+.=+.+.++.+.|++.|++|+..=+.. .++...++.+
T Consensus 3 ~v~ly~--~~~Cp~C~~a~~~L~~~gi~y~~~dv~~--~~~~~~~l~~ 46 (83)
T PRK10638 3 NVEIYT--KATCPFCHRAKALLNSKGVSFQEIPIDG--DAAKREEMIK 46 (83)
T ss_pred cEEEEE--CCCChhHHHHHHHHHHcCCCcEEEECCC--CHHHHHHHHH
Confidence 344443 4445899999999999999998765543 3444444544
No 417
>PRK11175 universal stress protein UspE; Provisional
Probab=37.30 E-value=1.3e+02 Score=24.97 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 132 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 132 ekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
+++.+.++..|++.+..+.--++..+.+ .+.+++.+++.||.++-+
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~g~~~~~i---~~~a~~~~~DLiV~G~~~ 117 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVWHNRPFEAI---IQEVIAGGHDLVVKMTHQ 117 (305)
T ss_pred HHHHHHHhhcCCceEEEEecCCCcHHHH---HHHHHhcCCCEEEEeCCC
Confidence 4444444556777777666333333334 444446678888888644
No 418
>PRK06949 short chain dehydrogenase; Provisional
Probab=37.30 E-value=2.1e+02 Score=22.68 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=21.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHH
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 162 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~ey 162 (188)
.+..+|+|..+ -+...+++.|.+.|. +|+-.-|+++++.+.
T Consensus 9 ~k~ilItGasg--~IG~~~a~~l~~~G~----~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 9 GKVALVTGASS--GLGARFAQVLAQAGA----KVVLASRRVERLKEL 49 (258)
T ss_pred CCEEEEECCCc--HHHHHHHHHHHHCCC----EEEEEeCCHHHHHHH
Confidence 45666777666 344555555555553 234444555554443
No 419
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.06 E-value=2.1e+02 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=42.7
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC--------hhHHHHHHHHHhhCCCeEEEE
Q 029774 119 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN--------RKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 119 aIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt--------P~~l~eyak~ae~~GvkVIIA 176 (188)
.+|-|-..+.+.+++..+.++.+++ .+.++..|.. .+++.+|.+..++.|+.|.|-
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~--~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKV--FVNLIPVNPTVPGLEKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCc--EEEEEecCCCCccCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 3555555558899999999998865 6888888863 366778888888889998885
No 420
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=37.05 E-value=68 Score=28.27 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=36.7
Q ss_pred CeEEEEecc---CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 116 PIVGIIMES---DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 116 pkVaIIMGS---~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
..+|||+|+ ..-+.+++...+.|++-|..+.+-++ =.=+|++|..|- ++++||-+|
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~-~~i~~~kL~nf~------eid~fV~~a 268 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSV-GEINPAKLANFP------EIDAFVQIA 268 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEE-SS--GGGGTTS---------SEEEE-S
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEE-CCCCHHHHhcCc------ccCEEEEec
Confidence 479999995 77888999999999999997655444 466888888876 267777665
No 421
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=37.00 E-value=1.1e+02 Score=24.76 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=42.5
Q ss_pred eEEEEeccCCCHHH---HHHHHHHHHHhCCCe----eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDSDLPV---MNDAARTLSDFGVPY----EIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~SDlpi---mekA~~vLeefGIpy----DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
+|+||.+.-.+.-+ .+.|.+.|++.|++. .+.|-+|-=.|-...++++ ...++-+|+.
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~---~~~~DavI~L 66 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAE---TGKYDAVIAL 66 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 58888887776433 567889999999984 4667777777777777664 3458888875
No 422
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=36.85 E-value=83 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-CCChhHHHHHHHH
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALS 165 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSA-HRtP~~l~eyak~ 165 (188)
..=+.+++|.+.|++.||+|+.+=+.- +-+.+++.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHH
Confidence 345789999999999999998776643 3446666666654
No 423
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=36.80 E-value=2.2e+02 Score=22.75 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=20.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHH
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS 161 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~e 161 (188)
.+..+|+|+.+. +...+++-|-+-|. . |+...|+++++.+
T Consensus 10 ~k~vlItGa~g~--iG~~ia~~l~~~G~--~--V~~~~r~~~~~~~ 49 (255)
T PRK07523 10 GRRALVTGSSQG--IGYALAEGLAQAGA--E--VILNGRDPAKLAA 49 (255)
T ss_pred CCEEEEECCcch--HHHHHHHHHHHcCC--E--EEEEeCCHHHHHH
Confidence 456777776653 34555555554453 2 3333455544443
No 424
>PRK06114 short chain dehydrogenase; Provisional
Probab=36.59 E-value=2.2e+02 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=15.6
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFG 142 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefG 142 (188)
+..++++|+|+.+. +...+++.|.+.|
T Consensus 6 ~~~k~~lVtG~s~g--IG~~ia~~l~~~G 32 (254)
T PRK06114 6 LDGQVAFVTGAGSG--IGQRIAIGLAQAG 32 (254)
T ss_pred CCCCEEEEECCCch--HHHHHHHHHHHCC
Confidence 33457777777664 4455555555555
No 425
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=36.45 E-value=1.6e+02 Score=24.67 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCCeEEEEeccCCCHH---HHHHHHHHHHHhCCCee----EEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 114 DTPIVGIIMESDSDLP---VMNDAARTLSDFGVPYE----IKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlp---imekA~~vLeefGIpyD----VrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
++.+++|+.+.=.+.- -.+.|.+.|+++|..+| ++|-+|--.|--..++++ ...++.+|+.
T Consensus 11 ~~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~---~~~yDAvv~l 78 (152)
T COG0054 11 KGLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLAR---TGKYDAVVAL 78 (152)
T ss_pred CCceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHh---cCCcceEEEE
Confidence 3458999988766653 36789999999999886 777788888866666664 3348888875
No 426
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=36.43 E-value=1.9e+02 Score=21.95 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=37.9
Q ss_pred eEEEEeccCCC--HHHHHHHHHHHHHhCCCee-------------------EEEEcC--C---CChhHHHHHHHHHhhCC
Q 029774 117 IVGIIMESDSD--LPVMNDAARTLSDFGVPYE-------------------IKILSP--H---QNRKGALSYALSAKERG 170 (188)
Q Consensus 117 kVaIIMGS~SD--lpimekA~~vLeefGIpyD-------------------VrVaSA--H---RtP~~l~eyak~ae~~G 170 (188)
++.|+-+|.+- ..+++.+++.|+.-|++++ .-|++. + ..|+.+.+|++.....|
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~ 81 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKP 81 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccC
Confidence 57777777653 4556666666665554332 222222 3 45677888877665566
Q ss_pred CeEEEEecCcc
Q 029774 171 IKIIIVGDGVE 181 (188)
Q Consensus 171 vkVIIAvAGmA 181 (188)
-++.+-+.|.+
T Consensus 82 k~~avfgtgd~ 92 (140)
T TIGR01754 82 SNVAIFGTGET 92 (140)
T ss_pred CEEEEEEcCCC
Confidence 66666666643
No 427
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=36.27 E-value=1.1e+02 Score=23.06 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCeeEEEE-cCCCChhHHHHHHH
Q 029774 129 PVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYAL 164 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVa-SAHRtP~~l~eyak 164 (188)
+.+++|.+.|++.|++|+++=+ .--=+.+++.++++
T Consensus 10 ~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 10 DTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred HHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 5789999999999999977644 44446777777775
No 428
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=36.04 E-value=2e+02 Score=22.13 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=37.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEE
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVI 174 (188)
.+.++..+..++..++++.+.+++.+++.-+-+--+...+....+..+..++.|..++
T Consensus 118 vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 118 ALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 4666677788899999999999999998644333343333333344444445566554
No 429
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.01 E-value=96 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcC-CCChhHHHHHHHHH
Q 029774 130 VMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALSA 166 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSA-HRtP~~l~eyak~a 166 (188)
.+++|...|++.||+|++.-... -=+.+++.++++..
T Consensus 13 t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 13 TCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 89999999999999998775553 44567777777644
No 430
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=35.95 E-value=2.6e+02 Score=23.45 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=41.1
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCC-ChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQ-NRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHR-tP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|+||.-.+. -...++...+.|++.|+.....+.-..- +...+...+...+..+.++||.....
T Consensus 136 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~ 202 (350)
T cd06366 136 RRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSP 202 (350)
T ss_pred cEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECCh
Confidence 47998875443 2355778888899999875433321111 13566667777776678888876543
No 431
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.87 E-value=2.4e+02 Score=27.78 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=50.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChhHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIVGDGVEAHL 184 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH---RtP~~l~eyak~ae~~GvkVIIAvAGmAAHL 184 (188)
.+.-|.-+-||.+-++.+.+..++.|...+..+.-.. -+++.+.++++++.+-|++. |+++-+++.|
T Consensus 106 d~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~-I~i~Dt~G~~ 175 (582)
T TIGR01108 106 DVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDS-ICIKDMAGIL 175 (582)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE-EEECCCCCCc
Confidence 3555667888999999999999999987776654332 25699999999988888874 6777666554
No 432
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=35.82 E-value=96 Score=23.85 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=28.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH 153 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH 153 (188)
+|+|+..-.-++.-+-...++|+.-|..++++++|.+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~ 37 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLN 37 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4777777777777777778888887877777778776
No 433
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=35.74 E-value=2.3e+02 Score=25.00 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=40.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC-CChhHHHHHHHHHhhCCCeEE
Q 029774 123 ESDSDLPVMNDAARTLSDFGVPYEIKILSPH-QNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 123 GS~SDlpimekA~~vLeefGIpyDVrVaSAH-RtP~~l~eyak~ae~~GvkVI 174 (188)
|....++.+.++.+.|.+.|+++.+...-.+ -+++++.++++.+.+.|++-+
T Consensus 143 ~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i 195 (318)
T TIGR03470 143 CREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGM 195 (318)
T ss_pred cCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 5566788889999999999998777554323 589999999999988888543
No 434
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=35.66 E-value=2.1e+02 Score=24.77 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCe--------------------------eEEEEcCCCChhHHHHHHHHHhh
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPY--------------------------EIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpy--------------------------DVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+|+||+|+.+=.- +.++..|-++|-.. -.-+..-++..+...+++++..+
T Consensus 7 ~gkvalVTG~s~GIG--~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIG--KAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCcEEEEECCCChHH--HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 467999999988654 56666666666531 22233345567777777755543
Q ss_pred --CC-CeEEEEecCccC
Q 029774 169 --RG-IKIIIVGDGVEA 182 (188)
Q Consensus 169 --~G-vkVIIAvAGmAA 182 (188)
.| ++++|--||...
T Consensus 85 ~~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALG 101 (270)
T ss_pred HhCCCCCEEEEcCCcCC
Confidence 24 788888887654
No 435
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.51 E-value=62 Score=29.28 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-+.
T Consensus 171 VGkPla~lL~~~~----ATVtichs~T~~L~~~~~~-----ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 171 VGKPLSALLLKEN----CSVTICHSKTHNLSSITSK-----ADIVVAAIGSPLKLT 217 (288)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCCCccC
Confidence 4556666665443 5677788666678887764 699999999876543
No 436
>PRK06914 short chain dehydrogenase; Provisional
Probab=35.51 E-value=2.1e+02 Score=23.26 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=9.2
Q ss_pred CCeEEEEecCccC
Q 029774 170 GIKIIIVGDGVEA 182 (188)
Q Consensus 170 GvkVIIAvAGmAA 182 (188)
+++++|-.||...
T Consensus 81 ~id~vv~~ag~~~ 93 (280)
T PRK06914 81 RIDLLVNNAGYAN 93 (280)
T ss_pred CeeEEEECCcccc
Confidence 4688888887643
No 437
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.50 E-value=1.4e+02 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=17.1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
..++++|+|+.|.--+...+++.|-+-|.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~ 34 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA 34 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC
Confidence 34677888876433445555555555554
No 438
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.47 E-value=86 Score=23.76 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=32.5
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCC------------------------CeeEEEEcCCCChhHHHHHHHHHhhCCCeE
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGV------------------------PYEIKILSPHQNRKGALSYALSAKERGIKI 173 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGI------------------------pyDVrVaSAHRtP~~l~eyak~ae~~GvkV 173 (188)
|+||=.|..-.....++...|.+.|. |..+.++-.-..|+.+.++++++.+.|++.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 55554455445666777777777662 122333334455666777777766667777
Q ss_pred EEEecC
Q 029774 174 IIVGDG 179 (188)
Q Consensus 174 IIAvAG 179 (188)
++..+|
T Consensus 83 v~~~~g 88 (116)
T PF13380_consen 83 VWLQPG 88 (116)
T ss_dssp EEE-TT
T ss_pred EEEEcc
Confidence 776666
No 439
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=35.46 E-value=67 Score=24.38 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+-|.+.+....++=..+.++|++.||+. +.|+. ..+.++. -+.+++||+..+..-..|
T Consensus 29 ~~v~SAG~~~~~~~p~a~~~l~e~Gid~-----~~~~s-~~l~~~~----~~~~D~iitm~~~~~~~p 86 (126)
T TIGR02689 29 IAVTSAGLEVSRVHPTAIEVMSEIGIDI-----SGQTS-KPLENFH----PEDYDVVISLCGCGVNLP 86 (126)
T ss_pred EEEEcCcCCCCCCCHHHHHHHHHhCCCc-----ccCcc-ccCChhH----hcCCCEEEEeCCCcccCC
Confidence 3344444444455578999999999974 45764 3333332 234899999977544455
No 440
>PRK10824 glutaredoxin-4; Provisional
Probab=35.41 E-value=2.2e+02 Score=22.30 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=35.8
Q ss_pred eEEEEeccCC---CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhC-C-CeEEEE
Q 029774 117 IVGIIMESDS---DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER-G-IKIIIV 176 (188)
Q Consensus 117 kVaIIMGS~S---DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~-G-vkVIIA 176 (188)
.|.|+|=|+- -=|.+.+|..+|+.+|++|...-+- ..++ +.+.+++.-+. - +.|||-
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~--~d~~-~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL--QNPD-IRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec--CCHH-HHHHHHHHhCCCCCCeEEEC
Confidence 4777766543 4568999999999999998654443 3454 44444433221 1 377774
No 441
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=35.30 E-value=57 Score=30.42 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=26.6
Q ss_pred eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 146 EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 146 DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
...|...|.....+.++.++ ++|+|+++|...-+.
T Consensus 238 ~ATVTicHs~T~nl~~~~~~-----ADIvIsAvGkp~~v~ 272 (345)
T PLN02897 238 DATVSTVHAFTKDPEQITRK-----ADIVIAAAGIPNLVR 272 (345)
T ss_pred CCEEEEEcCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 35667778777778888764 699999999987554
No 442
>PRK10426 alpha-glucosidase; Provisional
Probab=35.23 E-value=1.4e+02 Score=29.48 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=43.4
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---------------------CCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 119 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---------------------PHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 119 aIIMGS~SDlpimekA~~vLeefGIpyDVrVaS---------------------AHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
+...|-.+..+.+.+..+.+++.|||+|+-++- ..|-| ...+++++.++.|+++++-+
T Consensus 211 G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FP-dp~~mi~~L~~~G~k~v~~i 289 (635)
T PRK10426 211 GVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYP-QLDSRIKQLNEEGIQFLGYI 289 (635)
T ss_pred CccccccCCHHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCC-CHHHHHHHHHHCCCEEEEEE
Confidence 566777766778899999999999999987663 11223 25678888889999987654
No 443
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.02 E-value=70 Score=28.85 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-| ..|...|...+.+.++.++ ++++|+++|.+.-++
T Consensus 169 VG~Pla~lL~~~~----AtVti~hs~T~~l~~~~~~-----ADIvV~AvGkp~~i~ 215 (281)
T PRK14183 169 VGKPMAALLLNAN----ATVDICHIFTKDLKAHTKK-----ADIVIVGVGKPNLIT 215 (281)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCcCHHHHHhh-----CCEEEEecCcccccC
Confidence 4556666665544 3445568777778877764 699999999887654
No 444
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=35.01 E-value=1.3e+02 Score=26.38 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=63.7
Q ss_pred eeEEeeeceeeeecccccc--ccccccceeeccc-ccceeecccCCCCCCCCCCCeEEEEeccCCCHH--HHHHHHHHHH
Q 029774 65 VRTVSQGTIPVLASSNGSA--TSTRKDYSSVREP-STVFEEENANGDSTGKNDTPIVGIIMESDSDLP--VMNDAARTLS 139 (188)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlp--imekA~~vLe 139 (188)
........||.|.-+..+. +.+..++-.-|+. .+-.+..+.- +-..+....+..++.+++.++. .++...+.|+
T Consensus 95 ~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~-~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~ 173 (366)
T COG0683 95 SPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAA-DYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALK 173 (366)
T ss_pred hhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHH-HHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHH
Confidence 3345567788876654332 3344443222221 1112222111 1111122223566666766665 4888999999
Q ss_pred HhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 140 DFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 140 efGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
..|.. .+.....|.....+..++..+...+.++|+.
T Consensus 174 ~~G~~-~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~ 209 (366)
T COG0683 174 ALGGE-VVVEEVYAPGDTDFSALVAKIKAAGPDAVLV 209 (366)
T ss_pred hCCCe-EEEEEeeCCCCCChHHHHHHHHhcCCCEEEE
Confidence 99998 6666778888777888898888888885444
No 445
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=34.99 E-value=1.6e+02 Score=23.27 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=32.8
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC--CChhHHHHHHHHHhhCCCe
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH--QNRKGALSYALSAKERGIK 172 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH--RtP~~l~eyak~ae~~Gvk 172 (188)
.|++-.=---+-....++.++|+++|++..+.|++-+ +.|+.+.++. ++|..
T Consensus 7 ~V~LTFDDgp~~~~t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~----~~Ghe 60 (191)
T TIGR02764 7 KIALTFDISWGNDYTEPILDTLKEYDVKATFFLSGSWAERHPELVKEIV----KDGHE 60 (191)
T ss_pred EEEEEEECCCCcccHHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHH----hCCCE
Confidence 4554442222223467889999999999999888843 4555554444 55654
No 446
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=34.91 E-value=84 Score=24.89 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCe----------------eEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 132 NDAARTLSDFGVPY----------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 132 ekA~~vLeefGIpy----------------DVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
++..+.|++.+++. +++--.+|-..+-+.++++.+.++|++|++=..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 56678888888862 222223444467788899999999999987543
No 447
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=34.85 E-value=1.1e+02 Score=22.85 Aligned_cols=43 Identities=12% Similarity=-0.054 Sum_probs=30.7
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHH
Q 029774 122 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA 166 (188)
Q Consensus 122 MGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~a 166 (188)
.|+..=....+.+..+|+..||+|+..=++. .|+...++.+..
T Consensus 10 ~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~--d~~~r~em~~~~ 52 (92)
T cd03030 10 SGSTEIKKRQQEVLGFLEAKKIEFEEVDISM--NEENRQWMRENV 52 (92)
T ss_pred cccHHHHHHHHHHHHHHHHCCCceEEEecCC--CHHHHHHHHHhc
Confidence 3444445556678889999999998887775 577766666554
No 448
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=34.76 E-value=2.1e+02 Score=25.10 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeeEEEE---cCCC-ChhHHHHHHHHHhhCCCeEE
Q 029774 134 AARTLSDFGVPYEIKIL---SPHQ-NRKGALSYALSAKERGIKII 174 (188)
Q Consensus 134 A~~vLeefGIpyDVrVa---SAHR-tP~~l~eyak~ae~~GvkVI 174 (188)
+.+..++.|....+.+. .++| .|+.+.++++.+.+-|++.|
T Consensus 120 ~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i 164 (280)
T cd07945 120 VIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRI 164 (280)
T ss_pred HHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEE
Confidence 35555677876666555 3557 48888888888877787653
No 449
>PRK07201 short chain dehydrogenase; Provisional
Probab=34.73 E-value=2.7e+02 Score=25.88 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHH
Q 029774 113 NDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 162 (188)
Q Consensus 113 ~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~ey 162 (188)
.+..++.+|+|+.+ -+....++.|-+-|. ++.+ .-|.++.+.+.
T Consensus 368 ~~~~k~vlItGas~--giG~~la~~l~~~G~--~V~~--~~r~~~~~~~~ 411 (657)
T PRK07201 368 PLVGKVVLITGASS--GIGRATAIKVAEAGA--TVFL--VARNGEALDEL 411 (657)
T ss_pred CCCCCEEEEeCCCC--HHHHHHHHHHHHCCC--EEEE--EECCHHHHHHH
Confidence 34567999999998 456666666766664 3333 33555554443
No 450
>PRK07024 short chain dehydrogenase; Provisional
Probab=34.47 E-value=2.5e+02 Score=22.64 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHh-h-CCCeEEEEecCcc
Q 029774 156 RKGALSYALSAK-E-RGIKIIIVGDGVE 181 (188)
Q Consensus 156 P~~l~eyak~ae-~-~GvkVIIAvAGmA 181 (188)
++.+.+.++... . ..++++|..||..
T Consensus 62 ~~~i~~~~~~~~~~~g~id~lv~~ag~~ 89 (257)
T PRK07024 62 ADALAAAAADFIAAHGLPDVVIANAGIS 89 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 444444444332 1 2369999988864
No 451
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=34.21 E-value=88 Score=27.37 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=33.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH-HHHhhCCCeEEEE
Q 029774 123 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA-LSAKERGIKIIIV 176 (188)
Q Consensus 123 GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya-k~ae~~GvkVIIA 176 (188)
....|++.+++|.++. -.|.|.|+.+ ..+|+ +.+++.|.+|.-+
T Consensus 122 ~rhaDr~Fl~~Ale~s--------~vVYsiH~a~--~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 122 RRHADRPFLLKALEIS--------DVVYSIHKAG--SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccCCHHHHHHHHHhh--------heEEEeeccc--cHHHHHHHHHhcCCeEEEE
Confidence 5569999999999987 4688999998 56666 4556777666544
No 452
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=34.17 E-value=1.6e+02 Score=23.30 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred eeceeeeecccccccccc--------ccceeecccccceeecccCCCCCCCC--CCCeEEEEeccCC--CHHHHHHHHHH
Q 029774 70 QGTIPVLASSNGSATSTR--------KDYSSVREPSTVFEEENANGDSTGKN--DTPIVGIIMESDS--DLPVMNDAART 137 (188)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~--~~pkVaIIMGS~S--DlpimekA~~v 137 (188)
+..+||+.....+..+.+ ..|..+..+....+.-..+ ..+. ...+|+++.+... .....+...+.
T Consensus 79 ~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~~~ 155 (281)
T cd06325 79 TKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLEL---LKKLLPDAKTVGVLYNPSEANSVVQVKELKKA 155 (281)
T ss_pred CCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHH---HHHHCCCCcEEEEEeCCCCccHHHHHHHHHHH
Q ss_pred HHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCc
Q 029774 138 LSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAH 183 (188)
Q Consensus 138 LeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAH 183 (188)
+++.|++....... ..+...+.++...+. .++|++.....++
T Consensus 156 ~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~-~dai~~~~d~~a~ 197 (281)
T cd06325 156 AAKLGIEVVEATVS---SSNDVQQAAQSLAGK-VDAIYVPTDNTVA 197 (281)
T ss_pred HHhCCCEEEEEecC---CHHHHHHHHHHhccc-CCEEEEcCchhHH
No 453
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.97 E-value=1.3e+02 Score=27.35 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=42.0
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
..+.|..|.+.|-. +++...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 33 HLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35677777665544 466778899999999999999999899999999977644
No 454
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.91 E-value=53 Score=29.56 Aligned_cols=61 Identities=20% Similarity=0.424 Sum_probs=45.7
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCC-------Ce-------------eEEEEcCCCChhHHHHHHHHHhhCCCe
Q 029774 113 NDTPIVGIIMESDSDLPVMNDAARTLSDFGV-------PY-------------EIKILSPHQNRKGALSYALSAKERGIK 172 (188)
Q Consensus 113 ~~~pkVaIIMGS~SDlpimekA~~vLeefGI-------py-------------DVrVaSAHRtP~~l~eyak~ae~~Gvk 172 (188)
+.+..|.-+|+++-|++.-.++...|.+-|+ || ..|.+-..=++++..+++++.++.+.+
T Consensus 15 ~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 15 NRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 3446899999999999999999999987554 43 122334456788899999888866665
Q ss_pred E
Q 029774 173 I 173 (188)
Q Consensus 173 V 173 (188)
+
T Consensus 95 ~ 95 (265)
T COG0159 95 V 95 (265)
T ss_pred C
Confidence 3
No 455
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=33.85 E-value=95 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=33.9
Q ss_pred eEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEc--CCCChhHHHHHH
Q 029774 117 IVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILS--PHQNRKGALSYA 163 (188)
Q Consensus 117 kVaIIMGS~SDlp-imekA~~vLeefGIpyDVrVaS--AHRtP~~l~eya 163 (188)
++..++=-+-..+ ...++..+|+++|++..+.|++ +-+.|+...+..
T Consensus 65 k~v~lTFDDg~~~~~~~~il~iL~k~~i~ATfFv~g~~i~~~p~~~~~~~ 114 (267)
T COG0726 65 KAVALTFDDGPLDGNTPRILPLLKKYGIKATFFVVGSWIERNPDLVKRIA 114 (267)
T ss_pred CeEEEEeecCCCCCCcHHHHHHHHHcCCceEEEEehHhhHHCHHHHHHHH
Confidence 4555554444455 8999999999999999999999 444455555544
No 456
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=33.85 E-value=91 Score=20.08 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcC
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSP 152 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSA 152 (188)
+.+.++...|++.|++|+...+..
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecC
Confidence 467889999999999999988764
No 457
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=33.70 E-value=81 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=24.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeE
Q 029774 119 GIIMESDSDLPVMNDAARTLSDFGVPYEI 147 (188)
Q Consensus 119 aIIMGS~SDlpimekA~~vLeefGIpyDV 147 (188)
.++++.+.|-.++.+....+++.||||..
T Consensus 32 ~v~iA~Da~~~vv~~l~~lceek~Ip~v~ 60 (84)
T PRK13600 32 SLIIAEDVEVYLMTRVLSQINQKNIPVSF 60 (84)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 56667777777999999999999999864
No 458
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=33.67 E-value=58 Score=21.74 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEE
Q 029774 129 PVMNDAARTLSDFGVPYEIKIL 150 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVa 150 (188)
|.+.++...|++.||+|+..-.
T Consensus 11 p~c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 11 PFCCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred HHHHHHHHHHHHCCCceEEEEC
Confidence 8899999999999999998654
No 459
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.57 E-value=2.1e+02 Score=25.12 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEc-----------------CCCChhHHHHHHHHHhhCCCeEEEE
Q 029774 128 LPVMNDAARTLSDFGVPYEIKILS-----------------PHQNRKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 128 lpimekA~~vLeefGIpyDVrVaS-----------------AHRtP~~l~eyak~ae~~GvkVIIA 176 (188)
...+++.++-+++.+||+|+-++- .+|-|+ ..+++++.+++|+++++-
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~ 92 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPN 92 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEE
Confidence 566788888889999998887752 123343 668888888889988763
No 460
>PRK09526 lacI lac repressor; Reviewed
Probab=33.52 E-value=2.8e+02 Score=23.05 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=40.3
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCC-CChhHHHHHHHHHhhCCCeEEEEe
Q 029774 115 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPH-QNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 115 ~pkVaIIMGS~SD---lpimekA~~vLeefGIpyDVrVaSAH-RtP~~l~eyak~ae~~GvkVIIAv 177 (188)
...|++++.+.++ ..+.+.+.+.+++.|. ++.+.... -.++...++++...+.+++-+|..
T Consensus 63 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~--~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 63 SLTIGLATTSLALHAPSQIAAAIKSRADQLGY--SVVISMVERSGVEACQAAVNELLAQRVSGVIIN 127 (342)
T ss_pred CceEEEEeCCCCcccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 3469999886544 2456777788888885 44444433 345666677777777788777764
No 461
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=33.51 E-value=2e+02 Score=22.59 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=37.7
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDSDLPV---MNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~SDlpi---mekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|++++|+..+... .+--.+.+++.|++.+.. +..-.-.++...+.++..-+.+++.|++....
T Consensus 117 ~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~av~~~~d~ 185 (265)
T cd06299 117 KKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQGATAIIAGDSM 185 (265)
T ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCCCCEEEEcCcH
Confidence 479999998765322 344566778888765432 22222234455555544433347888887654
No 462
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=33.48 E-value=1.4e+02 Score=28.11 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=42.3
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh
Q 029774 116 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 168 (188)
Q Consensus 116 pkVaIIMGS~SD-lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~ 168 (188)
.++.|+.|.+.| .-+++...+.++++||.++..-....-+.+++.++++...+
T Consensus 105 ~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 105 GLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467778887754 45577778999999999988888888888899999987744
No 463
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=33.40 E-value=1.3e+02 Score=26.81 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=42.0
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 115 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 115 ~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
+..|.|+.=+..++..+.+++..|.+.|+..++-.. .+..++..+ .++..|+.-+|.+.-
T Consensus 322 ~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~--~~~l~k~~~---~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 322 SPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLG--GRKLKKQLK---YADKLGARFAVILGE 381 (397)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCC--CCCHHHHHH---HHHHcCCCEEEEECh
Confidence 346888776678888899999999999999876443 244444444 445667766666653
No 464
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.32 E-value=2.6e+02 Score=25.59 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=46.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hhHHHHHHHHHhhCCCeEEEEe
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt---------P~~l~eyak~ae~~GvkVIIAv 177 (188)
.+.+|-|=..+.+.+++.++.|+.++ ..+.++..|.. ++++.+|.+..++.|+.|.|--
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~ 326 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQ--SHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRA 326 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCC--CeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 46677787788899999999999885 47888888863 4567778777888899888743
No 465
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.04 E-value=2.1e+02 Score=22.92 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=42.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAH---RtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|.++-|+. ++++++...|++-.= .++|+..| -.+++..++++..++.++++++++=|.
T Consensus 49 ~~ifllG~~~---~~~~~~~~~l~~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGSE---EVLEKAAANLRRRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCCH---HHHHHHHHHHHHHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 3577777664 667777878876432 44555433 367888899998888899999998774
No 466
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=33.01 E-value=2.5e+02 Score=24.43 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=39.3
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCC-eeEEEEc-CCCChhHHHHHHHHHhhCCCeE
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVP-YEIKILS-PHQNRKGALSYALSAKERGIKI 173 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIp-yDVrVaS-AHRtP~~l~eyak~ae~~GvkV 173 (188)
+.|...+++.+.++.+.|.+.|++ ..+.+.- ..-+.+++.++++.+++.|+++
T Consensus 131 i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 131 ITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 455556788888888889888986 6666433 3457788888888888888764
No 467
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=33.00 E-value=2.5e+02 Score=22.38 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 029774 126 SDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 126 SDlpimekA~~vLeefGI 143 (188)
.|...-.+..+.|...++
T Consensus 39 ~~~~~~~~~i~~l~~~~v 56 (271)
T cd06314 39 GTVNAQLRMLEDLIAEGV 56 (271)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444444
No 468
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=32.96 E-value=1.4e+02 Score=24.14 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=44.6
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhCCC----eeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 116 PIVGIIMESDSDLPV---MNDAARTLSDFGVP----YEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 116 pkVaIIMGS~SDlpi---mekA~~vLeefGIp----yDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.+|+|+.+.-...-+ .+.|.+.|++.|++ ..++|-++.=.|-.+.++++ ..+++.+|+..
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~---~~~~Davi~lG 70 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAE---SGRYDAVIALG 70 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHH---CSTESEEEEEE
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhc---ccCccEEEEec
Confidence 479999877765432 34589999999993 35677889988988888885 34588888754
No 469
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=32.96 E-value=3e+02 Score=25.74 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=40.5
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecC
Q 029774 116 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDG 179 (188)
Q Consensus 116 pkVaIIMGS~-SDlpimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAG 179 (188)
..|++|.-.+ --...++...+.+++.||..... ++........+.++++..+..+++|||..+.
T Consensus 188 k~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~ 253 (510)
T cd06364 188 NWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSS 253 (510)
T ss_pred eEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 4688774322 22345777788889999876433 2333335566667776666667888887553
No 470
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=32.93 E-value=1.8e+02 Score=25.72 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCC-------------CChhHHHHHHHHHhhCCCeEEEEe
Q 029774 126 SDLPVMNDAARTLSDFGVPYEIKILSPH-------------QNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 126 SDlpimekA~~vLeefGIpyDVrVaSAH-------------RtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.+.+.+.+.++-+++.+||+|+-++-.. |-| ...+++++.+++|++|++-+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FP-dp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFP-DPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCC-CHHHHHHHHHHCCCEEEEEe
Confidence 4567788899999999999988877642 444 34667888888899887754
No 471
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.83 E-value=2.5e+02 Score=25.29 Aligned_cols=52 Identities=6% Similarity=-0.049 Sum_probs=38.4
Q ss_pred CCCCCeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 112 KNDTPIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 112 ~~~~pkVaIIMGS~SDl---pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
...+++|.||.+|...- --+..+...+++.+|+.|+-.+++++...-+.+..
T Consensus 143 ~~~~~RIlii~~s~~~~~qYi~~mn~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~ 197 (279)
T TIGR00627 143 EKLKSRILVISITPDMALQYIPLMNCIFSAQKQNIPIDVVSIGGDFTSGFLQQAA 197 (279)
T ss_pred cCCcceEEEEECCCCchHHHHHHHHHHHHHHHcCceEEEEEeCCccccHHHHHHH
Confidence 45678999999986432 22348888999999999999999875555555544
No 472
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.63 E-value=2.5e+02 Score=22.11 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.0
Q ss_pred CCeEEEEecCcc
Q 029774 170 GIKIIIVGDGVE 181 (188)
Q Consensus 170 GvkVIIAvAGmA 181 (188)
+++++|-.||..
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 578888888753
No 473
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=32.53 E-value=46 Score=28.75 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=36.5
Q ss_pred EEEeccCCCHHHHHHHHHHHH----HhCCCeeEEEEcCCC-ChhHHHHHHHHHhhCCCeEEEEec
Q 029774 119 GIIMESDSDLPVMNDAARTLS----DFGVPYEIKILSPHQ-NRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 119 aIIMGS~SDlpimekA~~vLe----efGIpyDVrVaSAHR-tP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.+..|...|...-+-+.+-++ ++ ...++...-... +++...+.++.+.++|+++||+..
T Consensus 6 ~~~~g~~~D~g~n~~~~~G~~~~~~~~-~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g 69 (306)
T PF02608_consen 6 LLDPGGINDKGFNQSAYEGLKRAEKEL-DGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHG 69 (306)
T ss_dssp EESSS-CCCSSHHHHHHHHHHHHHHHC-TTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEES
T ss_pred EEECCCCCCccHHHHHHHHHHHHHHHc-CCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 345677888766665555554 45 222444444444 567888888888889999999865
No 474
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=32.34 E-value=1.5e+02 Score=24.85 Aligned_cols=49 Identities=10% Similarity=0.164 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 127 DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 127 DlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
|-+.+.+..+.|.++|.++++.+- .+. ...+.++++.. +.+|+|+=.|+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~-~~~-l~~l~~l~~~~---~l~ivldH~G~ 156 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFD-AVD-LPALLPFLQKL---PVAVVIDHFGR 156 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeC-Hhh-HHHHHHHHHHC---CCCEEEECCCC
Confidence 778889999999999999999874 333 34555666554 58899988875
No 475
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=32.33 E-value=2.4e+02 Score=21.81 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=8.7
Q ss_pred CCeEEEEecCccC
Q 029774 170 GIKIIIVGDGVEA 182 (188)
Q Consensus 170 GvkVIIAvAGmAA 182 (188)
.++++|-.||...
T Consensus 82 ~id~vi~~ag~~~ 94 (246)
T PRK05653 82 ALDILVNNAGITR 94 (246)
T ss_pred CCCEEEECCCcCC
Confidence 4577787777643
No 476
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=32.26 E-value=1.6e+02 Score=26.79 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=26.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChh
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRK 157 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~ 157 (188)
.+|+|..+ -..+-.....|.++|... +.|.+.+..|.
T Consensus 300 k~v~i~~~----~~~~~~l~~~L~e~G~~v-~~v~~~~~~~~ 336 (428)
T cd01965 300 KRVAIAGD----PDLLLGLSRFLLEMGAEP-VAAVTGTDNPP 336 (428)
T ss_pred CEEEEEcC----hHHHHHHHHHHHHcCCcc-eEEEEcCCCch
Confidence 47887743 336678888999999975 55666666665
No 477
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=32.20 E-value=2.3e+02 Score=25.86 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=43.6
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCh---------hHHHHHHHHHhhCCCeEEEE
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR---------KGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP---------~~l~eyak~ae~~GvkVIIA 176 (188)
..+|-|=..+.+.+++.++.|+.++ +.+.++-.|..+ +++.+|.+..++.|+.|.|-
T Consensus 263 yvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR 328 (355)
T TIGR00048 263 YVLLDGVNDQVEHAEELAELLKGTK--CKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIR 328 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC--CceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 4566666666799999999999876 467777777633 67777888888889999884
No 478
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=32.10 E-value=59 Score=29.10 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=38.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCC--------eeEEEEcCCCChhHHHHHH-----HHHhhCCCeE-EEEecCccC
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSDFGVP--------YEIKILSPHQNRKGALSYA-----LSAKERGIKI-IIVGDGVEA 182 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLeefGIp--------yDVrVaSAHRtP~~l~eya-----k~ae~~GvkV-IIAvAGmAA 182 (188)
+++|++--.-=.++ ..+.++.+|+. .++.|+..|..|+.++... +..++.|+++ ++.+|||++
T Consensus 111 rfsViTtt~rs~~i---l~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~ 187 (230)
T COG4126 111 RFSVITTTERSRPI---LEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSD 187 (230)
T ss_pred eEEEEecCcccHHH---HHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHH
Confidence 56666533322222 33456667775 3666778888777766543 4456778865 457888875
No 479
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=32.02 E-value=2.6e+02 Score=22.24 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=26.1
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEec
Q 029774 119 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 178 (188)
Q Consensus 119 aIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvA 178 (188)
.++..+.+|.....++.+.|..-++ |--|+++. .++...+.++.+.+.|+.|+....
T Consensus 32 ~~~~~~~~~~~~~~~~i~~l~~~~v--dgiIi~~~-~~~~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 32 LKFADAQQKQENQISAIRSFIAQGV--DVIILAPV-VETGWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCC--CEEEEcCC-ccccchHHHHHHHHCCCCEEEEec
Confidence 3344555565555555555555443 33344332 223223334444455555555443
No 480
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=31.91 E-value=1.1e+02 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=24.9
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCh
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR 156 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP 156 (188)
|+|+.....+..-+-...++|+..| |+++++|++..|
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~--~~v~~vs~~~~~ 37 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAG--IEVTTASLEKKL 37 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 3555555555555666677777766 788888887755
No 481
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.89 E-value=81 Score=32.51 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=41.6
Q ss_pred CCCeEEEEeccCCCHHH-------HHHHHHHHHHhCCCeeEEEEc--C------C----------CChhHHHHHHHHHhh
Q 029774 114 DTPIVGIIMESDSDLPV-------MNDAARTLSDFGVPYEIKILS--P------H----------QNRKGALSYALSAKE 168 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpi-------mekA~~vLeefGIpyDVrVaS--A------H----------RtP~~l~eyak~ae~ 168 (188)
+..+|.|+-++..+... ...+.+.|++.|+.. -++. + + ++++.+.+++ ++
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~v--i~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii---~~ 80 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRV--VLVNSNPATIMTDPEMADATYIEPITPEFVEKII---EK 80 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEE--EEEcCCcccccCCcccCCEEEECCCCHHHHHHHH---HH
Confidence 34589999998876653 346899999999942 2221 1 0 1224444444 45
Q ss_pred CCCeEEEEecCccCcC
Q 029774 169 RGIKIIIVGDGVEAHL 184 (188)
Q Consensus 169 ~GvkVIIAvAGmAAHL 184 (188)
.+++.+|..-|...+|
T Consensus 81 e~~D~Iip~~gg~~~l 96 (1066)
T PRK05294 81 ERPDAILPTMGGQTAL 96 (1066)
T ss_pred HCcCEEEECCCCchhh
Confidence 6789999887765444
No 482
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=31.81 E-value=2e+02 Score=25.64 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=40.4
Q ss_pred cCCCHHHHHHHHH-HHHHh-CCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEE
Q 029774 124 SDSDLPVMNDAAR-TLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKII 174 (188)
Q Consensus 124 S~SDlpimekA~~-vLeef-GIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVI 174 (188)
|+|==.+++.... +|.+| +++++++..+.-|+.+++.+.++.++++..-||
T Consensus 5 SDstGeTAe~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~ 57 (255)
T PF03618_consen 5 SDSTGETAETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENAIVF 57 (255)
T ss_pred ecCchHHHHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCCEEE
Confidence 4555567776665 66899 899999999999999999999998877544333
No 483
>PRK12828 short chain dehydrogenase; Provisional
Probab=31.80 E-value=2.4e+02 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=15.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029774 116 PIVGIIMESDSDLPVMNDAARTLSDFGV 143 (188)
Q Consensus 116 pkVaIIMGS~SDlpimekA~~vLeefGI 143 (188)
.+..+|+|+.+- +...+++.|-+-|.
T Consensus 7 ~k~vlItGatg~--iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGG--LGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCc--HhHHHHHHHHHCCC
Confidence 356777887764 34555555544453
No 484
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.71 E-value=73 Score=28.64 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccC
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 182 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAA 182 (188)
...+..+..|...| -.|...|+..+.+.+++++ ++++|+++|.+.
T Consensus 163 ~vGrpla~lL~~~~----atVtv~hs~t~~L~~~~~~-----ADIvI~Avgk~~ 207 (279)
T PRK14178 163 DVGRPMAALLLNAD----ATVTICHSKTENLKAELRQ-----ADILVSAAGKAG 207 (279)
T ss_pred cccHHHHHHHHhCC----CeeEEEecChhHHHHHHhh-----CCEEEECCCccc
Confidence 45666677777666 4677789988888888864 799999999773
No 485
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=31.66 E-value=2.1e+02 Score=24.34 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=43.7
Q ss_pred eeeeeccccccccccccceeecccccceeecccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 029774 73 IPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTGKNDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP 152 (188)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSA 152 (188)
|=|++|.+|++-+.=.|++. +|. .+..|..+-++..|... .+.++++|||+- +..-
T Consensus 2 i~vl~Sg~Gsn~~al~~~~~-------------~~~-----l~~~i~~visn~~~~~~----~~~A~~~gIp~~--~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDACL-------------DGR-----VNGDVVVVVTNKPGCGG----AEYARENGIPVL--VYPK 57 (207)
T ss_pred EEEEEeCCChhHHHHHHHHH-------------cCC-----CCeEEEEEEEeCCCChH----HHHHHHhCCCEE--Eecc
Confidence 56899999988554333321 111 12357777777666654 456677899973 2222
Q ss_pred CCC-hhH--HHHHHHHHhhCCCeEEEEe
Q 029774 153 HQN-RKG--ALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 153 HRt-P~~--l~eyak~ae~~GvkVIIAv 177 (188)
.+. |+. -.++++..++-++++++.+
T Consensus 58 ~~~~~~~~~~~~~~~~l~~~~~Dliv~a 85 (207)
T PLN02331 58 TKGEPDGLSPDELVDALRGAGVDFVLLA 85 (207)
T ss_pred ccCCCcccchHHHHHHHHhcCCCEEEEe
Confidence 221 111 1233444455567766654
No 486
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.66 E-value=2.6e+02 Score=24.33 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 117 IVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 117 kVaIIMGS~SDlpimekA~~vLee-fGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
+|.++ |++ -.+++++.+.|++ +|+.. ++.-+-.-.|++-.++++.....++++++++=|.
T Consensus 107 ~v~ll-G~~--~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 107 PVFLV-GGK--PEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred eEEEE-CCC--HHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 56655 654 4589999998864 54432 1222222346777778888888899999988774
No 487
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.64 E-value=74 Score=28.76 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 185 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmAAHLP 185 (188)
+.++.+..|.+-|......|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 165 VGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (287)
T PRK14181 165 VGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKT-----ADIIIAAIGVPLFIK 215 (287)
T ss_pred chHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 567777777665433345777889777778888864 699999999886543
No 488
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.33 E-value=2.5e+02 Score=25.52 Aligned_cols=56 Identities=9% Similarity=0.196 Sum_probs=45.9
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hhHHHHHHHHHhhCCCeEEEE
Q 029774 119 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIV 176 (188)
Q Consensus 119 aIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRt---------P~~l~eyak~ae~~GvkVIIA 176 (188)
.+|-|=..+.+.+++.++.++.+ ++.+.++..|.. ++++.+|.+..++.|+.|.|-
T Consensus 257 ~LI~gvNDs~eda~~La~llk~l--~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR 321 (342)
T PRK14454 257 ALVKGVNDSKEDAKELGKLLKGM--LCHVNLIPVNEVKENGFKKSSKEKIKKFKNILKKNGIETTIR 321 (342)
T ss_pred EeECCCCCCHHHHHHHHHHHhcC--CceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 47777777889999999999976 568888988873 667888888888889999885
No 489
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.33 E-value=1.1e+02 Score=22.72 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=25.3
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCe
Q 029774 118 VGIIMESDSDLPVMNDAARTLSDFGVPY 145 (188)
Q Consensus 118 VaIIMGS~SDlpimekA~~vLeefGIpy 145 (188)
-.||+.++.+-.+.++..+.++..+||+
T Consensus 26 kLViiA~Da~~~~~k~i~~~c~~~~Vpv 53 (82)
T PRK13601 26 LQVYIAKDAEEHVTKKIKELCEEKSIKI 53 (82)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhCCCCE
Confidence 4778888888899999999999999999
No 490
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=31.25 E-value=2.4e+02 Score=23.34 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=39.9
Q ss_pred CeEEEEeccCCCH----HHHHHHHHHHHHhCCCeeEE-EEcCCCChhHHHHHHHHHhhCCCeEEEEecCc
Q 029774 116 PIVGIIMESDSDL----PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGV 180 (188)
Q Consensus 116 pkVaIIMGS~SDl----pimekA~~vLeefGIpyDVr-VaSAHRtP~~l~eyak~ae~~GvkVIIAvAGm 180 (188)
.+|+++.|...+. .-.+.-.+.|++.|++++-. +....-.++...+.++..-+.+++.|++....
T Consensus 177 ~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~~~d~ 246 (329)
T TIGR01481 177 KSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFVASDE 246 (329)
T ss_pred CeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEEcCcH
Confidence 4799998866432 23445567889999986532 33444455555555554434457888887653
No 491
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.22 E-value=1.9e+02 Score=22.28 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=44.2
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhh-CC-CeEEEEe
Q 029774 121 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE-RG-IKIIIVG 177 (188)
Q Consensus 121 IMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~-~G-vkVIIAv 177 (188)
++=|.|=-+....+...|..+|+++.+.-+--|-.+.++.+++..... +. +.|||.+
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECC
Confidence 344567788888899999999999999999999999999998875432 12 4777753
No 492
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=31.19 E-value=68 Score=21.30 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCC
Q 029774 130 VMNDAARTLSDFGVPYEIKILSPH 153 (188)
Q Consensus 130 imekA~~vLeefGIpyDVrVaSAH 153 (188)
-..++.-+|++.|++|++......
T Consensus 11 ~~~~v~~~L~~~~l~~~~~~~~~~ 34 (73)
T cd03047 11 NVQKVLWLLDELGLPYERIDAGGQ 34 (73)
T ss_pred chHHHHHHHHHcCCCCEEEEeccc
Confidence 456788899999999999877643
No 493
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=31.15 E-value=1.2e+02 Score=25.96 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 129 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 129 pimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
+.+++..+.|++-| .|+-|+-+|=..+.-.++++.. .|+++||++
T Consensus 169 ~~~~~~v~~lr~~~--~D~II~l~H~G~~~d~~la~~~--~giD~Iigg 213 (281)
T cd07409 169 EAAQKEADKLKAQG--VNKIIALSHSGYEVDKEIARKV--PGVDVIVGG 213 (281)
T ss_pred HHHHHHHHHHHhcC--CCEEEEEeccCchhHHHHHHcC--CCCcEEEeC
Confidence 44556566666544 6888888999888777777765 578998854
No 494
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=31.05 E-value=1.2e+02 Score=22.07 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=35.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 123 ESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 123 GS~SDlpimekA~~vLeefGIpyDVrVaS---AHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
|...|.|-.++..+.++.+.+ +-|-. .-|++.++..+++...+.|+.++.+-
T Consensus 37 ~~~~~R~~~~~ll~~~~~~d~---lvv~~~dRl~R~~~e~~~~~~~l~~~gi~l~~~~ 91 (126)
T cd03768 37 GGKKERPELQKLLEDLREGDT---LVVTKLDRLGRSTKDLLEIVEELREKGVSLRSLT 91 (126)
T ss_pred cCCcCCHHHHHHHHhCcCCCE---EEEEEcchhcCcHHHHHHHHHHHHHCCCEEEEec
Confidence 334678888888877773322 33333 55667777777777888999988873
No 495
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.93 E-value=1.8e+02 Score=23.99 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCC-----CCh-------hHHHHHHHHHhhCCCeEEE
Q 029774 128 LPVMNDAARTLSDFGVPYEIKILSPH-----QNR-------KGALSYALSAKERGIKIII 175 (188)
Q Consensus 128 lpimekA~~vLeefGIpyDVrVaSAH-----RtP-------~~l~eyak~ae~~GvkVII 175 (188)
++.++++.+..+.+|+++ +++.+.+ ..+ +.+.++.+.+++.|+++.|
T Consensus 93 ~~~~~~~i~~a~~lG~~~-v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRT-IQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHhCCCE-EEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 455677888888888886 4443321 111 2355555666676665544
No 496
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.90 E-value=2e+02 Score=24.39 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=34.9
Q ss_pred CCeEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 115 TPIVGIIMESDSDLP--VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 115 ~pkVaIIMGS~SDlp--imekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
..+|+|+. .++++. ..+...+.|++.|+...... ..-........++...++.+.++++.+
T Consensus 138 ~~~v~il~-~d~~~g~~~~~~~~~~l~~~G~~vv~~~-~~~~~~~D~s~~i~~i~~~~~d~v~~~ 200 (347)
T cd06336 138 GKKVALLG-PNDAYGQPWVAAYKAAWEAAGGKVVSEE-PYDPGTTDFSPIVTKLLAEKPDVIFLG 200 (347)
T ss_pred CceEEEEc-cCCchhHHHHHHHHHHHHHcCCEEeeec-ccCCCCcchHHHHHHHHhcCCCEEEEc
Confidence 35788885 344443 45556677888886532111 112234556666666667778777644
No 497
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=30.75 E-value=2.5e+02 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=41.0
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEe
Q 029774 114 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 114 ~~pkVaIIMGS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAv 177 (188)
.+..|.|+.-+..+.+.+.+.+..|++-|+.+++-.- -+++.+-.+ .|+..|+..+|.+
T Consensus 469 ~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~--~~sl~~q~k---~A~~~g~~~~iii 527 (563)
T TIGR00418 469 APVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR--NERLGKKIR---EAQKQKIPYMLVV 527 (563)
T ss_pred CCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHH---HHHhcCCCEEEEE
Confidence 3446888877777888999999999999998877542 245555544 4456777655444
No 498
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.72 E-value=2.5e+02 Score=25.61 Aligned_cols=56 Identities=11% Similarity=0.258 Sum_probs=42.2
Q ss_pred EEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hhHHHHHHHHHhhCCCeEEEEe
Q 029774 120 IIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIVG 177 (188)
Q Consensus 120 IIMGS~S-DlpimekA~~vLeefGIpyDVrVaSAHRt---------P~~l~eyak~ae~~GvkVIIAv 177 (188)
++.++.. +.+.+++.++.++.++ ..+.++-.|.. ++++.+|.+.+++.|+.|.|--
T Consensus 268 ~lI~gvNDs~ed~~~La~ll~~l~--~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~ 333 (356)
T PRK14455 268 ILLGGVNDQVEHAEELADLLKGIK--CHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRR 333 (356)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCC--CcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 4555554 4788999999999887 56777776654 3668888888888999998754
No 499
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=30.64 E-value=2.6e+02 Score=24.21 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHHHHHhhCCCeEEEEecCcc
Q 029774 128 LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 181 (188)
Q Consensus 128 lpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eyak~ae~~GvkVIIAvAGmA 181 (188)
.....-+..++++.|++.-.++..--|+...+.+.+..+..-|++=|.+..|=.
T Consensus 56 ~~s~~~a~~l~~~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~ 109 (287)
T PF02219_consen 56 MMSLLAAAKLLKETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDP 109 (287)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-T
T ss_pred CCcHHHHHHHHHHhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCC
Confidence 334445566667899999999999999999999999999999999999998853
No 500
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=30.64 E-value=87 Score=25.45 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=23.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChhHHHHHH
Q 029774 123 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 163 (188)
Q Consensus 123 GS~SDlpimekA~~vLeefGIpyDVrVaSAHRtP~~l~eya 163 (188)
|..-|+-..--++.+|+.|||. +++++|. +|.++..+-
T Consensus 120 ~~~~d~R~ygigaqIL~dLGV~-~~rLLtn--np~k~~~L~ 157 (169)
T PF00925_consen 120 GFPEDLRDYGIGAQILRDLGVK-KMRLLTN--NPRKYVALE 157 (169)
T ss_dssp T--S----THHHHHHHHHTT---SEEEE-S---HHHHHHHH
T ss_pred cCccccccHHHHHHHHHHcCCC-EEEECCC--ChhHHHHHh
Confidence 4457888888899999999998 8999998 677665554
Done!