Query 029777
Match_columns 188
No_of_seqs 119 out of 1980
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 36.3 65 0.0022 18.8 5.4 26 46-71 33-58 (61)
2 1dc1_A Bsobi restriction endon 14.6 92 0.0031 24.1 2.2 13 106-118 110-122 (323)
3 3arc_T Photosystem II reaction 14.5 1.5E+02 0.005 15.0 3.5 22 1-22 1-22 (32)
4 1rh5_B Preprotein translocase 13.2 2.3E+02 0.0079 17.2 3.4 21 47-67 38-58 (74)
5 2wwb_B SEC61gamma, protein tra 12.8 1.7E+02 0.0059 17.4 2.7 17 47-63 37-53 (68)
6 3h90_A Ferrous-iron efflux pum 12.3 4.6E+02 0.016 19.6 8.9 43 10-57 42-84 (283)
7 2ww9_B Protein transport prote 11.4 2.2E+02 0.0076 17.6 3.0 29 35-63 36-67 (80)
8 1wn4_A Vontr protein; helix, p 10.2 93 0.0032 15.0 0.7 9 104-112 8-16 (28)
9 3j1z_P YIIP, cation efflux fam 10.2 5.8E+02 0.02 19.4 9.1 87 8-113 49-135 (306)
10 2jwa_A Receptor tyrosine-prote 9.6 2.6E+02 0.009 15.1 3.4 24 7-30 21-44 (44)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=36.30 E-value=65 Score=18.84 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029777 46 WLLASALGFAVLTSLVFLASLVADRL 71 (188)
Q Consensus 46 ~~~~~~~g~~~~~~~~~~~~~l~~~~ 71 (188)
..+..++|+++.-.+.++..++...+
T Consensus 33 iak~~~iG~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 33 AAKITGLGIILIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666666655555555554443
No 2
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=14.57 E-value=92 Score=24.12 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 029777 106 LLEEAVYRGFLLT 118 (188)
Q Consensus 106 ~~EEl~fRg~l~~ 118 (188)
+.||++||-.+.+
T Consensus 110 FVdELv~RfLLtr 122 (323)
T 1dc1_A 110 FIDELIFRYLLFQ 122 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6899999988774
No 3
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=14.46 E-value=1.5e+02 Score=14.96 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 029777 1 MQALSLLLFQVLELSAALFLLS 22 (188)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~ 22 (188)
||++.........+.+.+..+.
T Consensus 1 MEa~vYt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 1 METITYVFIFACIIALFFFAIF 22 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhhh
Confidence 5565555544444444444443
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.20 E-value=2.3e+02 Score=17.16 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029777 47 LLASALGFAVLTSLVFLASLV 67 (188)
Q Consensus 47 ~~~~~~g~~~~~~~~~~~~~l 67 (188)
....++|+++.-.+.++.-++
T Consensus 38 ak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444444433
No 5
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=12.83 E-value=1.7e+02 Score=17.41 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029777 47 LLASALGFAVLTSLVFL 63 (188)
Q Consensus 47 ~~~~~~g~~~~~~~~~~ 63 (188)
.+..++|+++.-.+.+.
T Consensus 37 ak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 37 AMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555444444443
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=12.27 E-value=4.6e+02 Score=19.59 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccccchhHHHHHHHHHHHH
Q 029777 10 QVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVL 57 (188)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 57 (188)
-.+..+.+++..+...|+..+... |+..| -+.+.+...+..+.
T Consensus 42 D~~~~~~~l~~~~~s~~~~d~~~p-yG~~r----~E~l~~l~~~~~l~ 84 (283)
T 3h90_A 42 DIGASLTNLLVVRYSLQPADDNHS-FGHGK----AESLAALAQSMFIS 84 (283)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSCS-SCSTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-CcchH----HHHHHHHHHHHHHH
Confidence 345556666666766665443221 33322 24455555555443
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=11.42 E-value=2.2e+02 Score=17.55 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=12.7
Q ss_pred ccccccccchh---HHHHHHHHHHHHHHHHHH
Q 029777 35 FKTIKSPAERN---WLLASALGFAVLTSLVFL 63 (188)
Q Consensus 35 ~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~ 63 (188)
.+..++|++++ .....++|+++.-.+.++
T Consensus 36 lk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 36 LAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 334445555444444433
No 8
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=10.22 E-value=93 Score=14.99 Aligned_cols=9 Identities=56% Similarity=0.626 Sum_probs=6.4
Q ss_pred HHHHHHHHH
Q 029777 104 APLLEEAVY 112 (188)
Q Consensus 104 ~p~~EEl~f 112 (188)
+|+.||-+.
T Consensus 8 NplLEEALv 16 (28)
T 1wn4_A 8 NHLLEEALV 16 (28)
T ss_dssp THHHHHHHH
T ss_pred cHHHHHHHH
Confidence 578888654
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=10.21 E-value=5.8e+02 Score=19.43 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHhh
Q 029777 8 LFQVLELSAALFLLSRTIKPEYDLVNFFKTIKSPAERNWLLASALGFAVLTSLVFLASLVADRLFGAKAANNPLVREILL 87 (188)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (188)
+.-.+..+++++..+...|+..+... |+..|. +.+.+...|..+......+..--...+..+.+..++.
T Consensus 49 l~D~~s~~i~l~~~~~s~k~~d~~~p-yG~~R~----E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~------ 117 (306)
T 3j1z_P 49 FADTLASIINFIAIRYAIVPADHDHR-YGHGKA----EPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENAT------ 117 (306)
T ss_dssp THHHHHHHHHHHHHHHHTSCCCCTTS-SCCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTT------
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccCC-CchhhH----HHHHHHHHHHHHHHHHHHHHHHhhhheecCCCccccc------
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHH
Q 029777 88 SSDISATAIVLVNCIIAPLLEEAVYR 113 (188)
Q Consensus 88 ~~~~~~~~~~~~~~~~~p~~EEl~fR 113 (188)
..+.+...+-...+..++
T Consensus 118 --------~~~~v~~~~~~~~~~~~~ 135 (306)
T 3j1z_P 118 --------LGVVVSVVAIVLTLALVL 135 (306)
T ss_dssp --------CCHHHHHHHHHHHHHHHH
T ss_pred --------cchhhhhhHhhhhHHHHH
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.61 E-value=2.6e+02 Score=15.08 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q 029777 7 LLFQVLELSAALFLLSRTIKPEYD 30 (188)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~~~ 30 (188)
++......+....+.||+..++.|
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhheehhhhhccC
Done!