Query 029777
Match_columns 188
No_of_seqs 119 out of 1980
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 05:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dc1a_ c.52.1.11 (A:) Restric 17.5 33 0.0024 24.7 2.2 14 105-118 105-118 (319)
2 d1ppjd2 f.23.11.1 (D:196-241) 14.9 70 0.0051 16.2 2.6 22 150-171 14-35 (46)
3 d2incb1 a.25.1.2 (B:8-329) Tol 7.4 3.8E+02 0.028 19.0 6.2 43 82-126 199-241 (322)
4 d1mtyb_ a.25.1.2 (B:) Methane 7.2 4.3E+02 0.031 19.4 6.2 37 89-126 234-270 (384)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 6.2 2.6E+02 0.019 15.9 7.9 6 44-49 71-76 (100)
6 d1mhyb_ a.25.1.2 (B:) Methane 4.8 5E+02 0.037 19.0 5.0 40 82-122 224-264 (383)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.5 3.6E+02 0.026 15.6 7.1 8 44-51 77-84 (107)
8 d2gboa1 a.23.6.1 (A:1-82) Hypo 4.5 1.5E+02 0.011 16.8 1.2 12 101-112 34-45 (82)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 3.9 6E+02 0.043 17.3 5.9 8 114-121 80-87 (447)
10 d2e74g1 f.23.26.1 (G:9-35) Pet 3.5 2.4E+02 0.018 12.0 4.0 20 7-26 2-21 (27)
No 1
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.51 E-value=33 Score=24.73 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 029777 105 PLLEEAVYRGFLLT 118 (188)
Q Consensus 105 p~~EEl~fRg~l~~ 118 (188)
-+.||++||-.+.+
T Consensus 105 ~fieElv~RfLLtr 118 (319)
T d1dc1a_ 105 EFIDELIFRYLLFQ 118 (319)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 36999999988774
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.86 E-value=70 Score=16.23 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhCCchHHH
Q 029777 150 LFIIGCVLGSSYCWSGNLISSI 171 (188)
Q Consensus 150 ~~~~g~~~~~~y~~t~~i~~~i 171 (188)
.+..+++.+..|...+..|+++
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 4455556666666666677654
No 3
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]}
Probab=7.38 E-value=3.8e+02 Score=19.04 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 029777 82 VREILLSSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSW 126 (188)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~ 126 (188)
+++.....++...++ ....++-|+..|++++++ .+........
T Consensus 199 vE~~l~~~Dw~E~~v-A~nlv~e~l~~~l~~~~l-~~~A~~nGD~ 241 (322)
T d2incb1 199 IEKALIAWDWGEAFT-AINLVTKPAVEEALLQQL-GSLAQSEGDT 241 (322)
T ss_dssp HHHHTTCCSHHHHHH-HHHTTHHHHHHHHHTHHH-HHHHHHTTCH
T ss_pred HHHHhhcccHHHHHH-HHHHHHHHhhhHHHHHHH-HHHHHHcCCc
Confidence 344555555655544 566678899999999996 4444443333
No 4
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=7.19 E-value=4.3e+02 Score=19.42 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 029777 89 SDISATAIVLVNCIIAPLLEEAVYRGFLLTSLASTMSW 126 (188)
Q Consensus 89 ~~~~~~~~~~~~~~~~p~~EEl~fRg~l~~~l~~~~~~ 126 (188)
.++...+ +....++-|+.+|+++|++..+.-......
T Consensus 234 ~Dw~E~~-vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~ 270 (384)
T d1mtyb_ 234 FDWNESA-FSVHAVYDALFGQFVRREFFQRLAPRFGDN 270 (384)
T ss_dssp CCHHHHH-HHHHHTHHHHHHHHHHHTTHHHHGGGGTCC
T ss_pred ccHHHHH-HHHHhhHHhhhHHHHHHHHHHHHHHHcCCc
Confidence 4444433 366778889999999999987655443333
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.19 E-value=2.6e+02 Score=15.93 Aligned_cols=6 Identities=0% Similarity=-0.241 Sum_probs=2.9
Q ss_pred hhHHHH
Q 029777 44 RNWLLA 49 (188)
Q Consensus 44 ~~~~~~ 49 (188)
-++.|.
T Consensus 71 LEiiWT 76 (100)
T d3dtub2 71 LEIAWT 76 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 454544
No 6
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=4.79 E-value=5e+02 Score=18.99 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=26.6
Q ss_pred HHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029777 82 VREILL-SSDISATAIVLVNCIIAPLLEEAVYRGFLLTSLAS 122 (188)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~p~~EEl~fRg~l~~~l~~ 122 (188)
+++.+. ..++...+. ....++-|+..|+++|++..+.-..
T Consensus 224 vE~~lva~~Dw~E~~v-A~NlV~e~ll~~L~~~~f~~~~Aa~ 264 (383)
T d1mhyb_ 224 VQEIWQGVQDWNEILW-AGHAVYDATFGQFARREFFQRLATV 264 (383)
T ss_dssp HHHHHHSCCCHHHHHH-HHHHTHHHHHHHHHHTTTHHHHHTT
T ss_pred HHHHHhcCccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344433 355555443 6677889999999999987764433
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.54 E-value=3.6e+02 Score=15.56 Aligned_cols=8 Identities=0% Similarity=-0.139 Sum_probs=3.7
Q ss_pred hhHHHHHH
Q 029777 44 RNWLLASA 51 (188)
Q Consensus 44 ~~~~~~~~ 51 (188)
-++.|..+
T Consensus 77 lEi~WTvi 84 (107)
T d3ehbb2 77 IEVIWTLV 84 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45455433
No 8
>d2gboa1 a.23.6.1 (A:1-82) Hypothetical protein EF2458 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.49 E-value=1.5e+02 Score=16.79 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q 029777 101 CIIAPLLEEAVY 112 (188)
Q Consensus 101 ~~~~p~~EEl~f 112 (188)
..--|..||++=
T Consensus 34 mpqCPlyEEVlD 45 (82)
T d2gboa1 34 ISQCKAFEEVVD 45 (82)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccCCchHHHHHH
Confidence 445688999863
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.94 E-value=6e+02 Score=17.29 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 029777 114 GFLLTSLA 121 (188)
Q Consensus 114 g~l~~~l~ 121 (188)
|.+-++..
T Consensus 80 G~l~Dr~g 87 (447)
T d1pw4a_ 80 GSVSDRSN 87 (447)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHcC
Confidence 44444443
No 10
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.50 E-value=2.4e+02 Score=11.99 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 029777 7 LLFQVLELSAALFLLSRTIK 26 (188)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~~ 26 (188)
+++.++..+..+++..+.+.
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 45566666666665555443
Done!