BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029778
MSGGSTPVAGGYMRQRHSQGYASSGDDLEDDACSRPQPFSPSIPRAKTWVEILENVLWIA
SALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEK
WESFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLFTLFMASMVIFPHSMIGTLRP
QNDAFRID

High Scoring Gene Products

Symbol, full name Information P value
AT5G20120 protein from Arabidopsis thaliana 2.5e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029778
        (188 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2149219 - symbol:AT5G20120 "AT5G20120" species...   599  2.5e-58   1


>TAIR|locus:2149219 [details] [associations]
            symbol:AT5G20120 "AT5G20120" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
            process" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            eggNOG:NOG72972 EMBL:BT004800 EMBL:AK227801 IPI:IPI00523562
            RefSeq:NP_197512.1 UniGene:At.31225 EnsemblPlants:AT5G20120.1
            GeneID:832134 KEGG:ath:AT5G20120 TAIR:At5g20120
            HOGENOM:HOG000005938 InParanoid:Q84VV3 OMA:WELWSIS PhylomeDB:Q84VV3
            ProtClustDB:CLSN2687190 Genevestigator:Q84VV3 Uniprot:Q84VV3
        Length = 188

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 113/189 (59%), Positives = 132/189 (69%)

Query:     1 MSGGSTPVAGG-YMRQRHSQGYASSGDDLEDDACSRPQPFSPSIPRAKTWVEILENVLWI 59
             MSGG TPV GG Y+RQRHSQGYAS GDDLEDDACSRPQPFS   PR+KTWVEILENVLWI
Sbjct:     1 MSGG-TPVGGGGYIRQRHSQGYASGGDDLEDDACSRPQPFSLENPRSKTWVEILENVLWI 59

Query:    60 ASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDE 119
             ASA+FI+Y+GDRHSN I++L  D RI+R+PLY GM+ + +N+    Y SML W++RRFDE
Sbjct:    60 ASAVFIVYFGDRHSNMIHILLRDARIKRMPLYFGMLGIAVNIIIIIYESMLSWSMRRFDE 119

Query:   120 KWESFCISALPYXXXXXXXXXXXXXXXXWPIWSXXXXXXXXXXXMASMVIFPHSMIGTLR 179
             KWE + ISALP+                WPIW            MA +V+FPH MI   R
Sbjct:   120 KWELWSISALPFITLLGIISFGLLSFALWPIWGFLTLPLLFTLFMACLVVFPHLMIIKFR 179

Query:   180 PQNDAFRID 188
             PQND  RID
Sbjct:   180 PQNDELRID 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.140   0.471    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       161   0.00074  107 3  11 22  0.44    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  179 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  15.09u 0.09s 15.18t   Elapsed:  00:00:01
  Total cpu time:  15.09u 0.09s 15.18t   Elapsed:  00:00:02
  Start:  Thu May  9 17:29:19 2013   End:  Thu May  9 17:29:21 2013

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