Query 029778
Match_columns 188
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10856 DUF2678: Protein of u 85.0 1.9 4.1E-05 34.5 4.7 61 82-150 56-116 (118)
2 PF13937 DUF4212: Domain of un 83.4 4.4 9.5E-05 30.2 5.8 71 44-122 2-78 (81)
3 PF03348 Serinc: Serine incorp 83.3 14 0.0003 34.9 10.4 117 51-174 105-235 (429)
4 TIGR02230 ATPase_gene1 F0F1-AT 78.5 13 0.00027 28.8 7.1 60 86-154 36-96 (100)
5 COG0786 GltS Na+/glutamate sym 77.8 36 0.00079 32.4 11.1 102 43-160 211-312 (404)
6 PF07895 DUF1673: Protein of u 76.9 8.6 0.00019 32.7 6.3 28 41-68 43-70 (205)
7 KOG3488 Dolichol phosphate-man 73.4 11 0.00024 28.0 5.3 51 92-142 8-65 (81)
8 TIGR00210 gltS sodium--glutama 72.3 73 0.0016 29.9 11.7 108 50-174 215-322 (398)
9 PF04123 DUF373: Domain of unk 72.1 8.8 0.00019 35.5 5.5 15 76-90 149-163 (344)
10 PF15050 SCIMP: SCIMP protein 66.7 8 0.00017 31.4 3.6 33 92-126 14-46 (133)
11 PF05915 DUF872: Eukaryotic pr 66.1 56 0.0012 25.6 8.2 66 46-117 38-107 (115)
12 PF09323 DUF1980: Domain of un 59.6 37 0.0008 27.8 6.5 32 125-156 28-59 (182)
13 COG3162 Predicted membrane pro 57.1 17 0.00037 28.4 3.8 32 40-71 9-40 (102)
14 PRK09877 2,3-diketo-L-gulonate 57.1 52 0.0011 26.2 6.8 58 43-100 73-131 (157)
15 TIGR01301 GPH_sucrose GPH fami 57.1 1.2E+02 0.0026 28.9 10.1 118 53-181 266-411 (477)
16 PRK10599 calcium/sodium:proton 56.7 21 0.00047 33.2 5.0 36 55-90 223-259 (366)
17 PF03616 Glt_symporter: Sodium 54.9 1.7E+02 0.0038 26.9 11.6 94 51-160 218-311 (368)
18 TIGR03647 Na_symport_sm probab 53.0 65 0.0014 23.7 6.1 67 48-122 2-74 (77)
19 PF07330 DUF1467: Protein of u 52.7 37 0.0008 25.5 4.9 35 31-68 34-68 (85)
20 PF12196 hNIFK_binding: FHA Ki 50.1 1.2 2.6E-05 29.5 -3.0 35 2-36 4-39 (41)
21 PF09578 Spore_YabQ: Spore cor 49.4 55 0.0012 23.6 5.3 42 47-97 29-70 (80)
22 COG3714 Predicted membrane pro 48.7 1.4E+02 0.0031 26.1 8.5 100 56-175 53-156 (212)
23 PF13347 MFS_2: MFS/sugar tran 48.7 1.6E+02 0.0034 26.2 9.1 52 128-179 292-344 (428)
24 PF15176 LRR19-TM: Leucine-ric 47.0 27 0.00059 27.3 3.5 33 83-115 12-44 (102)
25 COG1615 Uncharacterized conser 44.8 1.9E+02 0.0041 30.1 9.7 57 51-113 192-259 (885)
26 PF04341 DUF485: Protein of un 43.5 28 0.0006 25.8 3.0 30 41-70 2-31 (91)
27 KOG0637 Sucrose transporter an 41.7 1.6E+02 0.0034 28.9 8.4 72 41-115 275-356 (498)
28 PLN02953 phosphatidate cytidyl 41.3 3.3E+02 0.0071 26.1 11.9 29 42-70 92-120 (403)
29 COG3256 NorB Nitric oxide redu 41.2 1.5E+02 0.0032 30.2 8.3 80 42-132 164-245 (717)
30 PF05478 Prominin: Prominin; 40.9 1.5E+02 0.0032 30.1 8.4 77 86-168 412-490 (806)
31 PF07444 Ycf66_N: Ycf66 protei 40.0 1.6E+02 0.0035 22.1 7.5 18 154-171 58-75 (84)
32 PF02674 Colicin_V: Colicin V 39.8 1.7E+02 0.0036 22.3 7.3 29 48-76 21-49 (146)
33 COG5454 Predicted secreted pro 38.6 65 0.0014 24.6 4.3 40 27-69 30-69 (89)
34 PF01770 Folate_carrier: Reduc 38.3 3.6E+02 0.0077 25.6 11.2 40 119-160 310-350 (412)
35 TIGR02893 spore_yabQ spore cor 38.1 57 0.0012 26.0 4.2 57 45-115 34-91 (130)
36 PF01770 Folate_carrier: Reduc 37.6 3.6E+02 0.0079 25.6 12.2 89 81-171 245-335 (412)
37 PF11368 DUF3169: Protein of u 37.2 42 0.00091 28.8 3.5 18 13-30 72-89 (248)
38 PF04276 DUF443: Protein of un 37.2 2.5E+02 0.0054 23.5 8.6 71 55-130 60-133 (199)
39 PF13630 SdpI: SdpI/YhfL prote 37.2 94 0.002 21.3 4.7 30 113-142 15-44 (76)
40 PRK12875 ubiA prenyltransferas 37.0 1.9E+02 0.004 25.7 7.7 34 114-150 246-279 (282)
41 PF10066 DUF2304: Uncharacteri 36.9 1.6E+02 0.0034 22.5 6.3 55 52-107 30-84 (115)
42 TIGR00827 EIIC-GAT PTS system, 36.5 1.3E+02 0.0028 28.7 6.9 71 87-157 30-125 (407)
43 PF10003 DUF2244: Integral mem 36.5 72 0.0016 25.3 4.5 31 131-161 19-49 (140)
44 PF02990 EMP70: Endomembrane p 36.1 4E+02 0.0086 25.5 10.5 90 82-178 291-389 (521)
45 KOG1889 Putative phosphoinosit 35.1 34 0.00073 33.9 2.8 21 155-175 539-559 (579)
46 PRK15033 tricarballylate utili 34.3 4.2E+02 0.009 25.2 11.6 21 158-178 340-361 (389)
47 TIGR00879 SP MFS transporter, 33.7 3E+02 0.0065 23.4 9.6 8 132-139 107-114 (481)
48 PF03596 Cad: Cadmium resistan 33.5 60 0.0013 27.6 3.8 75 55-132 96-170 (191)
49 KOG3457 Sec61 protein transloc 33.0 25 0.00053 26.9 1.3 19 1-20 2-24 (88)
50 PF02990 EMP70: Endomembrane p 33.0 1.3E+02 0.0028 28.9 6.3 74 56-142 304-377 (521)
51 PF07234 DUF1426: Protein of u 31.6 56 0.0012 25.9 3.1 29 87-116 13-44 (117)
52 PF04142 Nuc_sug_transp: Nucle 30.9 3.5E+02 0.0075 23.3 9.3 111 51-166 72-195 (244)
53 KOG1583 UDP-N-acetylglucosamin 30.9 85 0.0018 29.1 4.5 72 51-123 120-196 (330)
54 PF14143 YrhC: YrhC-like prote 30.3 1.2E+02 0.0026 22.2 4.5 43 100-146 19-61 (72)
55 PF11990 DUF3487: Protein of u 30.2 1.5E+02 0.0032 23.4 5.3 25 131-155 28-52 (121)
56 PF08372 PRT_C: Plant phosphor 30.1 3.2E+02 0.0069 22.6 8.0 22 68-91 81-102 (156)
57 PF13106 DUF3961: Domain of un 29.8 38 0.00082 22.4 1.6 27 81-108 10-36 (40)
58 TIGR03109 exosortase_1 exosort 29.5 4E+02 0.0087 23.6 9.8 17 148-164 111-127 (267)
59 TIGR02229 caa3_sub_IV caa(3)-t 28.7 83 0.0018 23.9 3.5 24 79-102 60-83 (92)
60 COG1346 LrgB Putative effector 28.0 4.3E+02 0.0093 23.4 9.0 96 53-168 5-103 (230)
61 COG0053 MMT1 Predicted Co/Zn/C 27.8 4.4E+02 0.0096 23.5 10.0 102 44-158 78-184 (304)
62 PRK10714 undecaprenyl phosphat 27.7 2E+02 0.0043 25.5 6.3 21 87-107 232-252 (325)
63 PF07857 DUF1632: CEO family ( 27.7 3.7E+02 0.0079 23.9 7.9 16 56-71 183-198 (254)
64 KOG3145 Cystine transporter Cy 27.4 3.6E+02 0.0078 25.4 8.0 78 94-177 207-284 (372)
65 PF06432 GPI2: Phosphatidylino 27.2 2.7E+02 0.0058 24.6 7.0 30 68-99 15-45 (282)
66 PF11674 DUF3270: Protein of u 27.2 1.6E+02 0.0035 22.4 4.8 8 16-23 4-11 (90)
67 MTH00028 COX3 cytochrome c oxi 26.9 4.9E+02 0.011 23.7 9.1 29 122-150 122-151 (297)
68 PLN02436 cellulose synthase A 26.7 4.7E+02 0.01 28.2 9.5 56 125-182 990-1051(1094)
69 TIGR01299 synapt_SV2 synaptic 26.6 6.9E+02 0.015 25.3 12.5 14 57-70 165-179 (742)
70 PF05684 DUF819: Protein of un 26.5 1.8E+02 0.0039 27.0 6.0 39 127-165 23-71 (378)
71 PF14348 DUF4400: Domain of un 26.2 2.6E+02 0.0057 23.0 6.4 65 93-161 114-180 (198)
72 PRK10263 DNA translocase FtsK; 26.2 6.7E+02 0.014 27.8 10.6 119 48-170 17-179 (1355)
73 PF07099 DUF1361: Protein of u 25.3 3.8E+02 0.0083 21.9 9.8 73 88-160 64-142 (168)
74 PF09842 DUF2069: Predicted me 25.0 3.2E+02 0.007 21.0 6.9 32 80-115 75-106 (109)
75 KOG2887 Membrane protein invol 25.0 4.4E+02 0.0095 22.5 11.5 53 125-177 107-160 (175)
76 COG5264 VTC1 Vacuolar transpor 24.8 1.8E+02 0.0039 23.6 4.9 52 90-145 63-118 (126)
77 PF06177 QueT: QueT transporte 24.7 3.7E+02 0.008 21.9 6.9 78 89-168 62-143 (152)
78 PLN02638 cellulose synthase A 24.7 3.3E+02 0.0071 29.3 8.0 18 52-69 852-869 (1079)
79 PF09788 Tmemb_55A: Transmembr 24.6 1.6E+02 0.0035 26.5 5.1 9 137-145 238-246 (256)
80 PF06379 RhaT: L-rhamnose-prot 24.1 1.9E+02 0.004 27.1 5.6 85 89-175 136-234 (344)
81 PF11712 Vma12: Endoplasmic re 23.6 3.3E+02 0.0072 21.4 6.3 64 42-108 68-133 (142)
82 PF10529 Hist_rich_Ca-bd: Hist 23.4 48 0.001 17.6 1.0 8 19-26 4-11 (15)
83 TIGR00908 2A0305 ethanolamine 23.4 5.5E+02 0.012 23.2 8.6 31 126-156 384-414 (442)
84 PF03631 Virul_fac_BrkB: Virul 23.2 4.5E+02 0.0097 22.0 8.8 24 43-66 104-127 (260)
85 PF11196 DUF2834: Protein of u 23.1 2.6E+02 0.0057 21.1 5.4 25 83-107 66-91 (97)
86 KOG2927 Membrane component of 22.9 93 0.002 29.4 3.4 38 77-116 179-216 (372)
87 PRK05415 hypothetical protein; 22.4 2.4E+02 0.0052 26.2 5.9 58 47-112 64-121 (341)
88 PF01654 Bac_Ubq_Cox: Bacteria 22.3 4.4E+02 0.0096 25.0 7.8 51 102-152 22-79 (436)
89 PF06522 B12D: NADH-ubiquinone 22.2 70 0.0015 22.9 2.0 20 124-143 2-21 (73)
90 PF05297 Herpes_LMP1: Herpesvi 22.1 30 0.00064 32.2 0.0 46 110-160 125-170 (381)
91 PF01062 Bestrophin: Bestrophi 21.7 2.2E+02 0.0048 24.3 5.3 30 139-168 230-259 (293)
92 PHA02898 virion envelope prote 21.5 2.9E+02 0.0064 21.3 5.3 52 56-114 18-69 (92)
93 COG1575 MenA 1,4-dihydroxy-2-n 21.4 5.7E+02 0.012 23.5 8.0 28 132-159 225-256 (303)
94 PF11359 gpUL132: Glycoprotein 21.3 66 0.0014 28.5 2.0 36 2-37 103-146 (235)
95 KOG2568 Predicted membrane pro 21.2 5E+02 0.011 25.7 8.0 69 75-145 325-400 (518)
96 PRK03776 phosphoglycerol trans 20.8 7.1E+02 0.015 25.8 9.3 32 80-112 19-52 (762)
97 PRK10714 undecaprenyl phosphat 20.6 1.7E+02 0.0036 26.0 4.4 13 137-149 240-252 (325)
98 PF14812 PBP1_TM: Transmembran 20.5 14 0.00031 27.7 -2.0 15 52-66 63-77 (81)
99 PLN02400 cellulose synthase 20.4 3.2E+02 0.0069 29.4 6.9 55 125-181 980-1040(1085)
100 PF08627 CRT-like: CRT-like; 20.2 3.7E+02 0.008 21.9 5.9 31 78-108 77-110 (130)
101 PF07297 DPM2: Dolichol phosph 20.2 3.2E+02 0.0069 20.3 5.1 19 92-110 6-24 (78)
102 PF05653 Mg_trans_NIPA: Magnes 20.1 3.1E+02 0.0067 24.5 6.0 52 120-173 236-287 (300)
No 1
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=84.97 E-value=1.9 Score=34.50 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=43.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhhhhhh
Q 029778 82 DERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFALWPI 150 (188)
Q Consensus 82 d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPV 150 (188)
+++..-.+|.+.+++++++..+ +.+|+|+-| -|-+.-..|...+++-++..+|-|.=.|.|
T Consensus 56 ~p~p~~iffavcI~l~~~s~~l------LI~WYR~gd--l~Pkfr~li~~~~~~ivllci~anlYf~~~ 116 (118)
T PF10856_consen 56 PPKPLHIFFAVCILLICISAIL------LIFWYRQGD--LDPKFRYLIYYNCFSIVLLCICANLYFHDV 116 (118)
T ss_pred CCCceEEehHHHHHHHHHHHHh------heeehhcCC--CChhHHHHHHHHHHHHHHHHHhheeEEeec
Confidence 3666678887777777666544 345677543 444556789999999999999998877654
No 2
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=83.42 E-value=4.4 Score=30.17 Aligned_cols=71 Identities=20% Similarity=0.466 Sum_probs=40.5
Q ss_pred chhhhHHHHHH-----HHHHHHHHHHH-HhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 029778 44 PRAKTWVEILE-----NVLWIASALFI-IYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRF 117 (188)
Q Consensus 44 ~r~~~w~~~lh-----svfWI~aai~v-~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~ 117 (188)
++.+.|++++. =+.|.++|.++ +++.|- ++..++-.+++.-=+..-|.-+++.+-+.+|.+...+.
T Consensus 2 ~~~~yWr~n~rl~~~lL~iW~vvsfg~~~lfa~~--------Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~Ya~~mnrl 73 (81)
T PF13937_consen 2 PARAYWRKNLRLIAILLAIWFVVSFGVGILFADE--------LNQITFGGFPLGFWFAAQGSIIVFVILIFVYAWRMNRL 73 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCeeCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45678988875 45677777777 776654 44455666665533333332223333333566666666
Q ss_pred ccchh
Q 029778 118 DEKWE 122 (188)
Q Consensus 118 ~~~wE 122 (188)
|+++.
T Consensus 74 D~~~g 78 (81)
T PF13937_consen 74 DRKYG 78 (81)
T ss_pred HHHHC
Confidence 66654
No 3
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=83.30 E-value=14 Score=34.94 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=69.0
Q ss_pred HHHHHHHHH--HHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHH---hhh---hhhccccchh
Q 029778 51 EILENVLWI--ASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSM---LVW---NVRRFDEKWE 122 (188)
Q Consensus 51 ~~lhsvfWI--~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v---~l~---~ik~~~~~wE 122 (188)
..+|+.+|. ....+..-.+=| | .-|+..-..|.++|.++.++++.|=+.+.+ +.| |+.+.+++=.
T Consensus 105 a~ihng~W~~K~l~l~~l~v~~F---f----iP~~~f~~~~~~v~~~ga~~FiliQlIlLvDFah~wne~w~~~~e~~~s 177 (429)
T PF03348_consen 105 AAIHNGFWFLKFLLLIGLIVGAF---F----IPNGSFINVYMYVARVGAFIFILIQLILLVDFAHSWNESWVEKAEEGNS 177 (429)
T ss_pred HHHHHhhHHHHHHHHHHHHheeE---E----eCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 589999998 233333332222 1 234455668888999998888887766543 222 5665543211
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhhhhhhH-----HhhHHHHHHHHhHH-HHhhcccc
Q 029778 123 SFCISALPYVTLLGVVSFFLLSFALWPIWS-----FLTLPLLFTLFMAS-MVIFPHSM 174 (188)
Q Consensus 123 ~~~P~~iPiaT~~gi~s~i~f~iALWPVW~-----flTP~lLFt~FMGv-v~~~~~~~ 174 (188)
+.+..++=..|+.+.++++..++.+.--+. .=+-++-+++-+.+ +.+++.+|
T Consensus 178 ~~w~~~Li~~T~~~y~~si~~~v~~y~~f~~~~C~lN~~fIt~nliL~vi~s~lSv~p 235 (429)
T PF03348_consen 178 KRWYIALIGVTLLFYAASIAGIVLMYVFFTPSGCSLNKFFITFNLILCVIISVLSVLP 235 (429)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Confidence 334677778888888888888887754443 11134455555554 34455555
No 4
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=78.51 E-value=13 Score=28.84 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=31.8
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhhhhhhhHHh
Q 029778 86 RRLPLYLGMVL-VGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFALWPIWSFL 154 (188)
Q Consensus 86 ~r~~f~lgll~-l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPVW~fl 154 (188)
++.|..+|+++ ++.++++...+-+++..-. |++| |..+ .-|+.+++.+ ..+++|++|-|.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~lG~WL--D~~~----~t~~-~~tl~~lllG--v~~G~~n~w~wi 96 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAVGIWL--DRHY----PSPF-SWTLTMLIVG--VVIGCLNAWHWV 96 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhc----CCCc-HHHHHHHHHH--HHHHHHHHHHHH
Confidence 34566656433 3444444444444444322 3445 5533 4555555544 457889999875
No 5
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=77.76 E-value=36 Score=32.38 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=57.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchh
Q 029778 43 IPRAKTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWE 122 (188)
Q Consensus 43 ~~r~~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE 122 (188)
..|.-.-..-+|.+.=|+.++.+.||.+ .++.. ..--.+.++..+++++-+--. ++..++...+.+
T Consensus 211 ~~~~i~~~~l~~~~~~i~i~~~vG~~i~-------~~l~~-~~~~lP~fv~~lfvgiIvrni------~~~~~~~~v~~~ 276 (404)
T COG0786 211 STRLITAEPLIETLAIIAICLAVGKIIN-------QLLKS-LGLALPLFVMCLFVGVILRNI------LDLLKKYRVFRR 276 (404)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH-------HHHhh-ccccccHHHHHHHHHHHHHhH------HHHhccccccHH
Confidence 3333333466789999999999999955 33444 333345454444444322111 112222212222
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHHHH
Q 029778 123 SFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLF 160 (188)
Q Consensus 123 ~~~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~lLF 160 (188)
.. ..+--...+.++|.-.-++.||-.-+.--|+++.
T Consensus 277 ~v--~~ig~vsL~lflamALmSlkLweL~~l~lpl~vi 312 (404)
T COG0786 277 AV--DVIGNVSLSLFLAMALMSLKLWELADLALPLLVI 312 (404)
T ss_pred HH--HHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 22 3455556667777777889999998888776543
No 6
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=76.86 E-value=8.6 Score=32.71 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=13.6
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 029778 41 PSIPRAKTWVEILENVLWIASALFIIYY 68 (188)
Q Consensus 41 ~~~~r~~~w~~~lhsvfWI~aai~v~YY 68 (188)
++.++...|.++.++-.=+....++..|
T Consensus 43 ~~~~~~~~~~~~~~~~~Ll~~~f~T~~~ 70 (205)
T PF07895_consen 43 NRDIKNPGWFRKRSNRILLINIFFTLVY 70 (205)
T ss_pred CCCCCCcceeeeccceeeHHHHHHHHHH
Confidence 3444445555566554444444444443
No 7
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=73.42 E-value=11 Score=28.04 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhhhhc--cccch--hhhccCchhHHHHHHHHHHHH
Q 029778 92 LGMVLVGLNVAFFFYTSML---VWNVRR--FDEKW--ESFCISALPYVTLLGVVSFFL 142 (188)
Q Consensus 92 lgll~l~i~~~i~~Y~~v~---l~~ik~--~~~~w--E~~~P~~iPiaT~~gi~s~i~ 142 (188)
+|+.++.++++++.|-.+| +|.+-. +.++| +.+|-.+||.+...+.++.++
T Consensus 8 vgl~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig 65 (81)
T KOG3488|consen 8 VGLMLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIG 65 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHH
Confidence 6889999999999998777 443331 11121 223355677776666555544
No 8
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=72.25 E-value=73 Score=29.87 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCch
Q 029778 50 VEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISAL 129 (188)
Q Consensus 50 ~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~i 129 (188)
.+-++++.+|..++++.|+.. ++ +.+.. -..+.++.....++-+-- .+++.+.. +.....-..|
T Consensus 215 ~~~i~~l~~i~iai~iG~~i~---~~----l~~~~-~~lP~fv~am~~giiirn------i~~~~~~~--~~~~~~i~~I 278 (398)
T TIGR00210 215 NSLIETIALIAVCLLVGYELN---DL----VAKTA-LMLPTFVWCLFVGVILRN------PLSFKKFP--WVAERAVSVI 278 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HH----HHHcC-CCCCchHHHHHHHHHHHH------HHHHhCcc--ccchHHHHHH
Confidence 356889999999999999742 23 33222 345555443333322111 11122211 1111123345
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHHHhHHHHhhcccc
Q 029778 130 PYVTLLGVVSFFLLSFALWPIWSFLTLPLLFTLFMASMVIFPHSM 174 (188)
Q Consensus 130 PiaT~~gi~s~i~f~iALWPVW~flTP~lLFt~FMGvv~~~~~~~ 174 (188)
--.....+++.-.-++-||-+.+..-|++. +...|++...-+..
T Consensus 279 ~~~sLdlfl~~AlmsL~L~~l~~~a~Plli-il~~q~i~~~l~~~ 322 (398)
T TIGR00210 279 GNVSLSLFLAIALMSLQLWELADLAGPIAL-ILLVQVMFMALYAI 322 (398)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555555555555668889999998887654 44455544443333
No 9
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=72.11 E-value=8.8 Score=35.47 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=13.7
Q ss_pred hhhhhhcCCCcchhH
Q 029778 76 IYLLWHDERIRRLPL 90 (188)
Q Consensus 76 ~~vll~d~~i~r~~f 90 (188)
+++++.||+.+|.+|
T Consensus 149 lKk~l~Dp~~~~~~l 163 (344)
T PF04123_consen 149 LKKALSDPEYRRTFL 163 (344)
T ss_pred HHHhhcChhhhceee
Confidence 589999999999888
No 10
>PF15050 SCIMP: SCIMP protein
Probab=66.67 E-value=8 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.644 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhcc
Q 029778 92 LGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCI 126 (188)
Q Consensus 92 lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P 126 (188)
++++++++.+.+.+|| ++.|-.|. -.+||..-|
T Consensus 14 VaII~vS~~lglIlyC-vcR~~lRq-Gkkweiakp 46 (133)
T PF15050_consen 14 VAIILVSVVLGLILYC-VCRWQLRQ-GKKWEIAKP 46 (133)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHc-cccceeccc
Confidence 3445556666777777 34444442 356765544
No 11
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=66.12 E-value=56 Score=25.64 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh--hccccchhhhhhhhcCCCcchhH-HHHHHHHHHHHHHHHHHHHhhh-hhhcc
Q 029778 46 AKTWVEILENVLWIASALFIIY--YGDRHSNFIYLLWHDERIRRLPL-YLGMVLVGLNVAFFFYTSMLVW-NVRRF 117 (188)
Q Consensus 46 ~~~w~~~lhsvfWI~aai~v~Y--Y~DF~~nl~~vll~d~~i~r~~f-~lgll~l~i~~~i~~Y~~v~l~-~ik~~ 117 (188)
++.||..+-+++=.+.+.+.+. ...+.. . ...++-+.+.| .+|++++ +-.+-.++++++.+ +.||+
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~----~-i~~~~~~~~~llilG~L~f-IPG~Y~~~i~y~a~rg~~Gy 107 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFG----H-IDGDRDRGWALLILGILCF-IPGFYHTRIAYYAWRGYKGY 107 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c-cCCCCcccchHHHHHHHHH-hccHHHHHHHHHHHcCCCCC
Confidence 4579999888776654444332 111100 0 01223333333 3555444 44455555555544 55555
No 12
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=59.60 E-value=37 Score=27.84 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=24.9
Q ss_pred ccCchhHHHHHHHHHHHHHHhhhhhhhHHhhH
Q 029778 125 CISALPYVTLLGVVSFFLLSFALWPIWSFLTL 156 (188)
Q Consensus 125 ~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP 156 (188)
+|+..|.+.+++++.++.-.+.+|..+.--.-
T Consensus 28 ~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 28 HPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 48999999999998888888888876654433
No 13
>COG3162 Predicted membrane protein [Function unknown]
Probab=57.10 E-value=17 Score=28.43 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=28.1
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHhhccc
Q 029778 40 SPSIPRAKTWVEILENVLWIASALFIIYYGDR 71 (188)
Q Consensus 40 ~~~~~r~~~w~~~lhsvfWI~aai~v~YY~DF 71 (188)
..++|+.+..++|-+++.|+++.+....|+-|
T Consensus 9 i~a~p~f~eLv~kr~~Fa~~ltl~flv~Y~~f 40 (102)
T COG3162 9 IAANPRFRELVRKRRRFAVPLTLIFLVVYFGF 40 (102)
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999988888653
No 14
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=57.07 E-value=52 Score=26.15 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=36.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhhc-cccchhhhhhhhcCCCcchhHHHHHHHHHHH
Q 029778 43 IPRAKTWVEILENVLWIASALFIIYYG-DRHSNFIYLLWHDERIRRLPLYLGMVLVGLN 100 (188)
Q Consensus 43 ~~r~~~w~~~lhsvfWI~aai~v~YY~-DF~~nl~~vll~d~~i~r~~f~lgll~l~i~ 100 (188)
.+|.+.+.+.+-+++.++.++.++|++ +....-..+.-...++..+|.+.+...++..
T Consensus 73 p~~~~~~l~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~s~~l~ip~~~~y~~~~~~~~l 131 (157)
T PRK09877 73 SPANQRRVSLLTHSLILLLCGALAWGATLKTIQDWSDYSPILGLPIGLMYAACLPTSLV 131 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCccHHHHHHHHHHHHHH
Confidence 467777888889999999999999875 3211101111122346667878766665543
No 15
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=57.05 E-value=1.2e+02 Score=28.92 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhhhh-cCCCcchhHHH---HHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCc
Q 029778 53 LENVLWIASALFIIYYGDRHSNFIYLLWH-DERIRRLPLYL---GMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISA 128 (188)
Q Consensus 53 lhsvfWI~aai~v~YY~DF~~nl~~vll~-d~~i~r~~f~l---gll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~ 128 (188)
++-+-|+.---+..|++|+.-. .+++ ++.....|-.- |...+.+|-....-..+.++.+.+. +..
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~---~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~---~g~----- 334 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGR---EVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG---WGA----- 334 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHH---HHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-----
Confidence 3577899999999999998552 2233 23333344333 5566655544433333455544421 110
Q ss_pred hhHH-HHHHHHHHHHHHhhh----h-----h--------------hhHHhhHHHHHHHHhHHHHhhccccceeccCC
Q 029778 129 LPYV-TLLGVVSFFLLSFAL----W-----P--------------IWSFLTLPLLFTLFMASMVIFPHSMIGTLRPQ 181 (188)
Q Consensus 129 iPia-T~~gi~s~i~f~iAL----W-----P--------------VW~flTP~lLFt~FMGvv~~~~~~~~~~~~~~ 181 (188)
-+.. .++-++.++|+...+ + + +|..+.+..++=.-.++.+-+|+.++++-.|.
T Consensus 335 ~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 335 GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN 411 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence 0111 344444444444443 2 2 58888888888888899999999999887763
No 16
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=56.65 E-value=21 Score=33.24 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=25.6
Q ss_pred HHHHHHHHH-HHHhhccccchhhhhhhhcCCCcchhH
Q 029778 55 NVLWIASAL-FIIYYGDRHSNFIYLLWHDERIRRLPL 90 (188)
Q Consensus 55 svfWI~aai-~v~YY~DF~~nl~~vll~d~~i~r~~f 90 (188)
+..|++++. .+..-.|....-++...++-.+...|-
T Consensus 223 s~~~L~v~lv~Vv~lAe~lv~sIe~~v~~~Glp~afi 259 (366)
T PRK10599 223 HAIWLIIHLIAVIAVTKMNASPLETLLTSMNAPVAFT 259 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHhcCCCHHHH
Confidence 457776665 777778887777777777777777663
No 17
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=54.92 E-value=1.7e+02 Score=26.86 Aligned_cols=94 Identities=20% Similarity=0.339 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchh
Q 029778 51 EILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALP 130 (188)
Q Consensus 51 ~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iP 130 (188)
..++.+.=+..++++-|+. ...+.+..+ ..+.+++....++- .- ......+.. +-|...-..|-
T Consensus 218 ~~i~~l~~i~i~~~~G~~i-------~~~l~~~~~-~lP~f~~ami~g~i---vr---n~~~~~~~~--~id~~~i~~I~ 281 (368)
T PF03616_consen 218 SLIEHLALILIAIGLGYII-------SALLKKIGL-TLPLFVGAMIVGII---VR---NILDKTGKY--KIDRKTIDRIS 281 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHcCc-CCchHHHHHHHHHH---HH---HHHHHhCcc--cCCHHHHHHHH
Confidence 4667777778888888862 233444222 23333222222111 11 112222211 11222223344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHhhHHHHH
Q 029778 131 YVTLLGVVSFFLLSFALWPIWSFLTLPLLF 160 (188)
Q Consensus 131 iaT~~gi~s~i~f~iALWPVW~flTP~lLF 160 (188)
-....++++.-.-++-+|-+-...-|+++.
T Consensus 282 ~~sL~~fl~~almsl~l~~l~~~a~Pllii 311 (368)
T PF03616_consen 282 GISLDLFLAMALMSLKLWVLADYALPLLII 311 (368)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444555555555688899999999998753
No 18
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=53.01 E-value=65 Score=23.71 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=35.8
Q ss_pred hHHHHHH-----HHHHHHHHHHHHh-hccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccch
Q 029778 48 TWVEILE-----NVLWIASALFIIY-YGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKW 121 (188)
Q Consensus 48 ~w~~~lh-----svfWI~aai~v~Y-Y~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~w 121 (188)
.|++++. =+.|.+.|.++.+ +.| .++.-++-..++.-=+..-|.-+++..-+.+|.+...|.|+++
T Consensus 2 ywr~n~~li~~lL~iWf~vsfg~~~lf~~--------~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~Ya~~m~rlD~~~ 73 (77)
T TIGR03647 2 YWRANLRLIAVLLAIWFVVSFGAGILFAD--------ELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRKY 73 (77)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHcCCeeCCCChHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666664 4566677776655 444 3566667776665333333322223333335666666666655
Q ss_pred h
Q 029778 122 E 122 (188)
Q Consensus 122 E 122 (188)
.
T Consensus 74 g 74 (77)
T TIGR03647 74 G 74 (77)
T ss_pred C
Confidence 3
No 19
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=52.74 E-value=37 Score=25.49 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=17.2
Q ss_pred cccCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 029778 31 DACSRPQPFSPSIPRAKTWVEILENVLWIASALFIIYY 68 (188)
Q Consensus 31 d~~~~~~~~~~~~~r~~~w~~~lhsvfWI~aai~v~YY 68 (188)
|...-+.|++|.+++.+ ||.----++++-+..+||
T Consensus 34 ~vv~Gt~~sAP~~~~l~---rk~~~TTiiaavi~~~~~ 68 (85)
T PF07330_consen 34 EVVPGTDPSAPANPRLK---RKALITTIIAAVIFAIIY 68 (85)
T ss_pred CcCCCCCCCCCCCchHH---HHHHHHHHHHHHHHHHHH
Confidence 33344556666666654 444444444444444443
No 20
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=50.11 E-value=1.2 Score=29.48 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=18.3
Q ss_pred CCCCcccCCc-ccceecccCCCCCCCCccccccCCC
Q 029778 2 SGGSTPVAGG-YMRQRHSQGYASSGDDLEDDACSRP 36 (188)
Q Consensus 2 ~~~~~~~~g~-~~rq~~~q~~~~~~dd~~~d~~~~~ 36 (188)
|-|.|||--- .+.+|+|+..+-.+||++++..-.|
T Consensus 4 sq~~TPVCTptfLErRKS~~~emndDd~D~EIv~K~ 39 (41)
T PF12196_consen 4 SQGPTPVCTPTFLERRKSEVAEMNDDDEDDEIVFKQ 39 (41)
T ss_dssp TTS------HHHHHHHHHHHHH--GGGGS-SEEESS
T ss_pred cCCCCccccHHHHHHhhhhhhcccCCCcCCeeEecc
Confidence 4577888877 8899999998765565666654333
No 21
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=49.37 E-value=55 Score=23.56 Aligned_cols=42 Identities=26% Similarity=0.652 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHH
Q 029778 47 KTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLV 97 (188)
Q Consensus 47 ~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l 97 (188)
+.++-.-+-++|+++++.+.+. ....|.-.-|+|..+|+++.
T Consensus 29 ~~~~~i~DllfWl~~~~~~F~~---------l~~~N~G~iR~Y~~lg~~~G 70 (80)
T PF09578_consen 29 RWLTGIEDLLFWLLAALIVFYF---------LYWTNYGEIRFYIFLGILLG 70 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------HHHccceeeeHHHHHHHHHH
Confidence 3444444668999999988874 23567778888877666543
No 22
>COG3714 Predicted membrane protein [Function unknown]
Probab=48.71 E-value=1.4e+02 Score=26.14 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHH
Q 029778 56 VLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLL 135 (188)
Q Consensus 56 vfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~ 135 (188)
..||+++....=-+|. ++.+++ |..|..|+++..+.=. +|.-.+++.-+..-..| | +| +.
T Consensus 53 ~~lI~agLalsa~GD~-------LL~~p~--~~~f~~Gl~aFLlaHl--~y~~~~~~~~~~~~~~~----~--~~---~~ 112 (212)
T COG3714 53 RWLIVAGLALSALGDA-------LLLLPG--RLAFVAGLIAFLLAHL--LYIGALLRSARTLSLWW----P--LP---AA 112 (212)
T ss_pred cHHHHHHHHHHHHHHH-------HHhCcc--hHHHHHHHHHHHHHHH--HHHHHHHHhcccccccc----h--HH---HH
Confidence 4677887888888885 577777 8888888877765543 44433444444333455 3 23 33
Q ss_pred HHHHHHHHHhhhhhhhHHhhHH----HHHHHHhHHHHhhccccc
Q 029778 136 GVVSFFLLSFALWPIWSFLTLP----LLFTLFMASMVIFPHSMI 175 (188)
Q Consensus 136 gi~s~i~f~iALWPVW~flTP~----lLFt~FMGvv~~~~~~~~ 175 (188)
..+.++....++||-=+=+++| ++++..|++.-...++|.
T Consensus 113 l~vv~~v~l~~lw~~lg~L~~PV~~yi~~l~~M~~~A~~~~l~~ 156 (212)
T COG3714 113 LLVVGAVLLALLWPRLGELRIPVAIYIAMLLVMVWAALELWLPT 156 (212)
T ss_pred HHHHHHHHHHHHhccccCccccHHHHHHHHHHHHHHHHHHhccC
Confidence 3444455567899988877766 467777777777777765
No 23
>PF13347 MFS_2: MFS/sugar transport protein
Probab=48.69 E-value=1.6e+02 Score=26.19 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHhhh-hhhhHHhhHHHHHHHHhHHHHhhccccceecc
Q 029778 128 ALPYVTLLGVVSFFLLSFAL-WPIWSFLTLPLLFTLFMASMVIFPHSMIGTLR 179 (188)
Q Consensus 128 ~iPiaT~~gi~s~i~f~iAL-WPVW~flTP~lLFt~FMGvv~~~~~~~~~~~~ 179 (188)
..-.+.+...++.+++-..= =+.|.++....+.....|..+.+|+.++...-
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~i 344 (428)
T PF13347_consen 292 VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVI 344 (428)
T ss_pred ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccch
Confidence 34444444444444432222 35777777777777778888888888875543
No 24
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=46.98 E-value=27 Score=27.33 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029778 83 ERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVR 115 (188)
Q Consensus 83 ~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik 115 (188)
..-++|.|.+|.++.++.+++.+.+++-++-.+
T Consensus 12 ~~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred CCCcccHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 346778888999999999999998888877333
No 25
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=1.9e+02 Score=30.12 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhhhcCC----------Cc-chhHHHHHHHHHHHHHHHHHHHHhhhh
Q 029778 51 EILENVLWIASALFIIYYGDRHSNFIYLLWHDER----------IR-RLPLYLGMVLVGLNVAFFFYTSMLVWN 113 (188)
Q Consensus 51 ~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~----------i~-r~~f~lgll~l~i~~~i~~Y~~v~l~~ 113 (188)
--.-...|++..+ +.|+.|.+ .+++.+| || ++...+.++.+++..++.+|.++.++.
T Consensus 192 ~a~~~G~~vlL~a-v~ywL~Ry-----ell~~~~g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~~r~ 259 (885)
T COG1615 192 LASLLGALVLLKA-VAYWLDRY-----ELLSREHGTFTGAGYTDINAQLPAKLILIAIALLCAIAFFSAIFLRD 259 (885)
T ss_pred HHHHHHHHHHHHH-HHHHHHHh-----HhhhcCCCcccccCceeeeeeccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677887776 89999963 3444433 33 367777888888888888888777555
No 26
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=43.48 E-value=28 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 029778 41 PSIPRAKTWVEILENVLWIASALFIIYYGD 70 (188)
Q Consensus 41 ~~~~r~~~w~~~lhsvfWI~aai~v~YY~D 70 (188)
.++|+.+..+++-.++.|.++++...+|.=
T Consensus 2 ~~~p~f~~L~r~r~r~~~~l~~i~l~~y~~ 31 (91)
T PF04341_consen 2 LRSPEFQELVRRRRRLAWPLSAIFLVLYFG 31 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999888887754
No 27
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=41.69 E-value=1.6e+02 Score=28.94 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=48.1
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhh-cCCCcc----hhHH-----HHHHHHHHHHHHHHHHHHh
Q 029778 41 PSIPRAKTWVEILENVLWIASALFIIYYGDRHSNFIYLLWH-DERIRR----LPLY-----LGMVLVGLNVAFFFYTSML 110 (188)
Q Consensus 41 ~~~~r~~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~-d~~i~r----~~f~-----lgll~l~i~~~i~~Y~~v~ 110 (188)
...||...-....|.+-|+..--+..||+||.-. .+++ |++... .-.| .|.+++.+|-.+.-.+...
T Consensus 275 ~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~---~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~ 351 (498)
T KOG0637|consen 275 KVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGR---EVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLL 351 (498)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcch---HhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 3444544334567999999999999999999543 3343 665544 2222 7888888887777766666
Q ss_pred hhhhh
Q 029778 111 VWNVR 115 (188)
Q Consensus 111 l~~ik 115 (188)
.+++.
T Consensus 352 ~~~l~ 356 (498)
T KOG0637|consen 352 VEKLS 356 (498)
T ss_pred HHHHH
Confidence 55443
No 28
>PLN02953 phosphatidate cytidylyltransferase
Probab=41.29 E-value=3.3e+02 Score=26.09 Aligned_cols=29 Identities=3% Similarity=-0.078 Sum_probs=19.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 029778 42 SIPRAKTWVEILENVLWIASALFIIYYGD 70 (188)
Q Consensus 42 ~~~r~~~w~~~lhsvfWI~aai~v~YY~D 70 (188)
.-.+.+.++|.+-.++=+..+++++|+++
T Consensus 92 ~~~~~~l~~RIiSglvl~~l~l~vV~~GG 120 (403)
T PLN02953 92 QKKASQLKKRVIFGIGIGLPVGCVVLAGG 120 (403)
T ss_pred ccccccHHHHHHHHHHHHHHHHheeeeCc
Confidence 33344456677777777777788877654
No 29
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=41.22 E-value=1.5e+02 Score=30.20 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=41.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcc--hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 029778 42 SIPRAKTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRR--LPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDE 119 (188)
Q Consensus 42 ~~~r~~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r--~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~ 119 (188)
|.|..| ||+-+.|-=.+=+..+=|+.-+++. -+..|+.++- .|-....+++.+.++...|.. .+..+
T Consensus 164 pd~~~r---~~l~~FF~Wt~w~a~~nYTnnwPh~--pli~n~~~~~~~~wsi~svilLl~~i~l~~wv~------~~~~d 232 (717)
T COG3256 164 PDQEDR---EKLFAFFFWTSWIAATNYTNNWPHE--PLIGNPPTTVNYMWSITSVILLLVGIALLLWVY------LKLTD 232 (717)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHhcccCCCCCC--cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH------Hhhhh
Confidence 445554 7887776433334444477654432 2233333333 444455555555555555551 13346
Q ss_pred chhhhccCchhHH
Q 029778 120 KWESFCISALPYV 132 (188)
Q Consensus 120 ~wE~~~P~~iPia 132 (188)
+||..-|..-|..
T Consensus 233 hee~~~~~~~P~~ 245 (717)
T COG3256 233 HEEVPRPSEDPPL 245 (717)
T ss_pred hhhccccCCCCCc
Confidence 7777777665543
No 30
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=40.85 E-value=1.5e+02 Score=30.11 Aligned_cols=77 Identities=17% Similarity=0.044 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhcc--ccchhhhccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHHH
Q 029778 86 RRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRF--DEKWESFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLFTLF 163 (188)
Q Consensus 86 ~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~--~~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~lLFt~F 163 (188)
-||...++++++.+-+++++++...+. +.|+ ++++...+- ..-+-+.+++++++|++. +-+++..+-+|+++
T Consensus 412 yR~~~~lil~~~llLIv~~~~lGLl~G-~~G~~~~~~p~~r~c--~~~tGg~~Lm~gv~~~Fl---f~~~l~l~~~~~Fl 485 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIVLCLLLGLLCG-CCGYRRRADPTDRGC--SSNTGGNFLMAGVGLSFL---FSWFLMLLVLFYFL 485 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCCcccCC--CCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345555777777666666666654443 3332 233322221 233344455555555443 23567778888888
Q ss_pred hHHHH
Q 029778 164 MASMV 168 (188)
Q Consensus 164 MGvv~ 168 (188)
+|..+
T Consensus 486 ~G~~~ 490 (806)
T PF05478_consen 486 VGGNT 490 (806)
T ss_pred HHhhh
Confidence 88877
No 31
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=40.02 E-value=1.6e+02 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.1
Q ss_pred hhHHHHHHHHhHHHHhhc
Q 029778 154 LTLPLLFTLFMASMVIFP 171 (188)
Q Consensus 154 lTP~lLFt~FMGvv~~~~ 171 (188)
++|.+||-|+..+.+++-
T Consensus 58 ldp~ll~~Q~l~~~~~i~ 75 (84)
T PF07444_consen 58 LDPILLFGQMLLVGLLIF 75 (84)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 599999999998877653
No 32
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=39.83 E-value=1.7e+02 Score=22.26 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccchhh
Q 029778 48 TWVEILENVLWIASALFIIYYGDRHSNFI 76 (188)
Q Consensus 48 ~w~~~lhsvfWI~aai~v~YY~DF~~nl~ 76 (188)
-+++-++-+.|+++..+..++.+..++++
T Consensus 21 ~~~~~~~l~~~i~a~~~a~~~~~~~~~~l 49 (146)
T PF02674_consen 21 FIRELFSLIGLIVALFVAFLFYPPLAPFL 49 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999988888766664
No 33
>COG5454 Predicted secreted protein [Function unknown]
Probab=38.60 E-value=65 Score=24.59 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=29.0
Q ss_pred CccccccCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHhhc
Q 029778 27 DLEDDACSRPQPFSPSIPRAKTWVEILENVLWIASALFIIYYG 69 (188)
Q Consensus 27 d~~~d~~~~~~~~~~~~~r~~~w~~~lhsvfWI~aai~v~YY~ 69 (188)
|||-|...-.-|++|.+|+.. |++-.--|+.|-++..||+
T Consensus 30 ~ee~dv~lGtv~sAP~~p~~~---R~vl~TT~~savi~gl~y~ 69 (89)
T COG5454 30 DEEGDVTLGTVPSAPANPHLL---RAVLRTTVASAVIFGLFYG 69 (89)
T ss_pred hhcCCCCCCcCCCCCCCcchh---hHHHHHHHHHHHHHHHHHH
Confidence 444455555667788888875 7777777888888888885
No 34
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=38.33 E-value=3.6e+02 Score=25.63 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=27.4
Q ss_pred cchhhhccCchhHHHHHHHHHHHHHHhhhh-hhhHHhhHHHHH
Q 029778 119 EKWESFCISALPYVTLLGVVSFFLLSFALW-PIWSFLTLPLLF 160 (188)
Q Consensus 119 ~~wE~~~P~~iPiaT~~gi~s~i~f~iALW-PVW~flTP~lLF 160 (188)
.+|+... ..-.+.++.+.+++.+..+.+ .+|--....++|
T Consensus 310 ~~w~~~~--~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif 350 (412)
T PF01770_consen 310 VNWDRWG--ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIF 350 (412)
T ss_pred cchHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4666653 466777788888888888888 677655555544
No 35
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=38.06 E-value=57 Score=26.04 Aligned_cols=57 Identities=23% Similarity=0.497 Sum_probs=35.7
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029778 45 RAKTWVEIL-ENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVR 115 (188)
Q Consensus 45 r~~~w~~~l-hsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik 115 (188)
+.+.|...+ +-+||+++|+.+.|- .+..|.---|+|..+|+++. +.+|-....+.+.
T Consensus 34 ~~~~~~~~ieDilFWi~~~~~vF~~---------L~~~N~G~lR~Y~~lg~~~G-----~~lY~~lls~~~~ 91 (130)
T TIGR02893 34 RLNKILVFIEDILFWIVQALIVFYF---------LLYVNEGEIRFYVFLALLCG-----LAIYQALLSKYYV 91 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---------HHHhccchhhHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 334454455 567899999998873 23567778888877766543 3445544555444
No 36
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=37.60 E-value=3.6e+02 Score=25.55 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=43.2
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHh--hhhhhhHHhhHHH
Q 029778 81 HDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSF--ALWPIWSFLTLPL 158 (188)
Q Consensus 81 ~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~i--ALWPVW~flTP~l 158 (188)
.|+++..|=+- -.+..+...-+.-|.-.+-..+ .-+++=+.+.=..=-++|+.|-++.++-.. .-|..||-++..+
T Consensus 245 ~~~~ll~WSlW-Wa~atcgy~qv~nYvQ~LW~~v-~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~ 322 (412)
T PF01770_consen 245 SNPRLLLWSLW-WAFATCGYYQVINYVQSLWDTV-PPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGV 322 (412)
T ss_pred cCchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhc-CCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHH
Confidence 45555542221 2233334445556664444444 112233333333334445555444444333 4899999888766
Q ss_pred HHHHHhHHHHhhc
Q 029778 159 LFTLFMASMVIFP 171 (188)
Q Consensus 159 LFt~FMGvv~~~~ 171 (188)
+-.+--|++.++.
T Consensus 323 ~S~l~a~~L~lm~ 335 (412)
T PF01770_consen 323 FSLLQAGLLFLMS 335 (412)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444454443
No 37
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=37.18 E-value=42 Score=28.77 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=9.8
Q ss_pred cceecccCCCCCCCCccc
Q 029778 13 MRQRHSQGYASSGDDLED 30 (188)
Q Consensus 13 ~rq~~~q~~~~~~dd~~~ 30 (188)
.||+|++-.+++|||++|
T Consensus 72 ~~k~~~~~~~~~deD~~~ 89 (248)
T PF11368_consen 72 SRKYKKLYEEEEDEDENE 89 (248)
T ss_pred HHHHHHHhcccccchHHH
Confidence 466666666554444433
No 38
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=37.18 E-value=2.5e+02 Score=23.55 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhhhcCCCcchh-HHHHHHHHHHHHHHHHHHHHhhhhhhcccc--chhhhccCchh
Q 029778 55 NVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLP-LYLGMVLVGLNVAFFFYTSMLVWNVRRFDE--KWESFCISALP 130 (188)
Q Consensus 55 svfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~-f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~--~wE~~~P~~iP 130 (188)
+.-|++++++++- .++.+.+.+-.++.... .++.++++++..++.++..+.-+.-++... +-++..-...|
T Consensus 60 ~~~~~~~G~~vli-----~~llr~~~~~~~i~~~~~i~~~i~~i~~l~v~~l~~~l~kk~k~~i~~~~~~~~~ki~l~P 133 (199)
T PF04276_consen 60 SIGWLGAGISVLI-----SVLLRPYIDYFNIQSSRIINIIICIIVILGVLILRIYLNKKLKKKIYNRNKNSKQKIILIP 133 (199)
T ss_pred chhhHHHHHHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceEEEEEE
Confidence 3348888777764 34455555555555533 556777777777776766444333222211 33333345666
No 39
>PF13630 SdpI: SdpI/YhfL protein family
Probab=37.16 E-value=94 Score=21.26 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=19.5
Q ss_pred hhhccccchhhhccCchhHHHHHHHHHHHH
Q 029778 113 NVRRFDEKWESFCISALPYVTLLGVVSFFL 142 (188)
Q Consensus 113 ~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~ 142 (188)
+-.+-++.|++.+-.+=+...+.|++..++
T Consensus 15 ~t~~s~~~W~~a~r~~g~~~~~~Gi~~~~~ 44 (76)
T PF13630_consen 15 WTMKSDENWKKAHRFAGKIFIIGGIVLLII 44 (76)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556889888877666666666664444
No 40
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=37.01 E-value=1.9e+02 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=24.7
Q ss_pred hhccccchhhhccCchhHHHHHHHHHHHHHHhhhhhh
Q 029778 114 VRRFDEKWESFCISALPYVTLLGVVSFFLLSFALWPI 150 (188)
Q Consensus 114 ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPV 150 (188)
++..+++=|..|+.-+-+.|+.|-+ .+..++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 279 (282)
T PRK12875 246 ILRAGIAVDRAYWWFPAINTVVGML---LTLGGLWRL 279 (282)
T ss_pred HhccccchhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4555677788889999999887654 446678865
No 41
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=36.93 E-value=1.6e+02 Score=22.52 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 029778 52 ILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYT 107 (188)
Q Consensus 52 ~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~ 107 (188)
.-++++|++.+++++.-.= +++..+.+-+--.+.|..-.+-++++.+.+.+.++.
T Consensus 30 ~~~~l~Wl~~~i~~l~~~i-fP~~~~~vA~~lGi~~~~n~lf~~~i~~ll~~~~~l 84 (115)
T PF10066_consen 30 LKYSLLWLVFSIILLILSI-FPNILDWVAKLLGIGRPPNLLFYLGILFLLVIIFSL 84 (115)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4478999999988887543 466666666666677755444444444444444444
No 42
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=36.48 E-value=1.3e+02 Score=28.70 Aligned_cols=71 Identities=18% Similarity=0.380 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhh----hhcc-------ccchhhhcc--CchhHHHHHHHHHHH------------
Q 029778 87 RLPLYLGMVLVGLNVAFFFYTSMLVWN----VRRF-------DEKWESFCI--SALPYVTLLGVVSFF------------ 141 (188)
Q Consensus 87 r~~f~lgll~l~i~~~i~~Y~~v~l~~----ik~~-------~~~wE~~~P--~~iPiaT~~gi~s~i------------ 141 (188)
|.=+.+|..+.|+|+++.+......|- +++. |.-|...+. ++-|++.....++.+
T Consensus 30 ~sgltvGIGF~Ginlvi~ll~~~l~Pa~q~mv~~~Gl~L~iiDvGW~~~aaiaw~t~~~~~~ipl~i~vNiiml~~k~Tk 109 (407)
T TIGR00827 30 KAGLTIGIGFVGIGLVIDLLVDSLGPAAKGMVERFGLDLHVIDVGWPATSSIAWASVIAAFIIPLGLLVNVAMLVTRTTK 109 (407)
T ss_pred HHhhhHHHHHHhHHHHHHHHHhcchHHHHHHHHHhCCCCceeecCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344668999999999999998877773 3332 345744322 223343333333222
Q ss_pred HHHhhhhhhhHHhhHH
Q 029778 142 LLSFALWPIWSFLTLP 157 (188)
Q Consensus 142 ~f~iALWPVW~flTP~ 157 (188)
++|+=+|+.|++...-
T Consensus 110 tlnVDiWN~wh~~~~G 125 (407)
T TIGR00827 110 TMNVDIWNFWHYTFTG 125 (407)
T ss_pred ceechhHHHHHHHHHH
Confidence 3477789999998877
No 43
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=36.47 E-value=72 Score=25.26 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHhhHHHHHH
Q 029778 131 YVTLLGVVSFFLLSFALWPIWSFLTLPLLFT 161 (188)
Q Consensus 131 iaT~~gi~s~i~f~iALWPVW~flTP~lLFt 161 (188)
+++++++++...+..+.|||-.|.-.=++.+
T Consensus 19 ~~~~~~~~a~~f~~~GaW~Vl~F~glev~~l 49 (140)
T PF10003_consen 19 LAAVSLIIAIAFLLMGAWPVLPFAGLEVLAL 49 (140)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 4566677777777778899988865544433
No 44
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=36.09 E-value=4e+02 Score=25.55 Aligned_cols=90 Identities=23% Similarity=0.428 Sum_probs=50.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHhhh-hhhccccchhh---hccCchhHHHHHHHHHHHHHHhhhhh-----hhH
Q 029778 82 DERIRRLPLYLGMVLVGLNVAFFFYTSMLVW-NVRRFDEKWES---FCISALPYVTLLGVVSFFLLSFALWP-----IWS 152 (188)
Q Consensus 82 d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~-~ik~~~~~wE~---~~P~~iPiaT~~gi~s~i~f~iALWP-----VW~ 152 (188)
++..+...+..++++-.+...++-|....+. ..++ ++|-+ .+..++|.... +..+..|...|- .-.
T Consensus 291 ~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g--~~W~~~~~lt~~~~P~~~~---~~~~~~n~i~~~~~ss~aip 365 (521)
T PF02990_consen 291 SPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGG--KKWKKNSILTSLLFPGILF---SIFFILNFIAWSYGSSSAIP 365 (521)
T ss_pred cccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CceeehhhHHHHHHHHHHH---HHHHHHHHHHHhhccccccc
Confidence 3444556666777777777777777766544 3333 46743 23344454322 223355777772 334
Q ss_pred HhhHHHHHHHHhHHHHhhccccceec
Q 029778 153 FLTLPLLFTLFMASMVIFPHSMIGTL 178 (188)
Q Consensus 153 flTP~lLFt~FMGvv~~~~~~~~~~~ 178 (188)
|-|-+.|+.++ +.+-+|+..+|..
T Consensus 366 f~t~~~l~~lw--~~v~~PL~~lG~~ 389 (521)
T PF02990_consen 366 FGTILFLIALW--FFVSIPLTFLGGY 389 (521)
T ss_pred hHHHHHHHHHH--HHHhhhhhhcchh
Confidence 66655554444 5667788877654
No 45
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=35.08 E-value=34 Score=33.92 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.0
Q ss_pred hHHHHHHHHhHHHHhhccccc
Q 029778 155 TLPLLFTLFMASMVIFPHSMI 175 (188)
Q Consensus 155 TP~lLFt~FMGvv~~~~~~~~ 175 (188)
||.+++++|++++|++...-+
T Consensus 539 ~~~l~~~l~w~~~~~~s~~~i 559 (579)
T KOG1889|consen 539 TPNLLYRLFWFAIMVVSIAVI 559 (579)
T ss_pred CchHHHHHHHHHHHHHHHHhh
Confidence 999999999999999884433
No 46
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=34.26 E-value=4.2e+02 Score=25.23 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=14.4
Q ss_pred HHHHHHhHH-HHhhccccceec
Q 029778 158 LLFTLFMAS-MVIFPHSMIGTL 178 (188)
Q Consensus 158 lLFt~FMGv-v~~~~~~~~~~~ 178 (188)
+++.+.+|+ .+++-++|.+|+
T Consensus 340 ~~l~lHL~~V~~LF~~lPysKf 361 (389)
T PRK15033 340 LLLALHLGVVMALFLTLPYGKF 361 (389)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 666667766 556667887776
No 47
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=33.66 E-value=3e+02 Score=23.43 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 029778 132 VTLLGVVS 139 (188)
Q Consensus 132 aT~~gi~s 139 (188)
+.+...++
T Consensus 107 ~~~~~~~~ 114 (481)
T TIGR00879 107 IALLFVIG 114 (481)
T ss_pred HHHHHHHH
Confidence 33333333
No 48
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=33.54 E-value=60 Score=27.58 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHH
Q 029778 55 NVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYV 132 (188)
Q Consensus 55 svfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPia 132 (188)
+.+|-++++.++=-+|=..-+ -=++-+....... +.++-..+.+.+-||++..+-..+.+.+--|++.-..+|+.
T Consensus 96 ~~i~~Va~iTiAnGgDNigIY-iP~Fa~~s~~~l~--v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~l~p~v 170 (191)
T PF03596_consen 96 SLILTVAAITIANGGDNIGIY-IPLFASLSLAELI--VILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRWLVPIV 170 (191)
T ss_pred chhHHhhhhhhhcCCCeEEEe-ehhhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhcccHHHHH
Confidence 446888888887766733321 1122222222222 33444445667778887776655554444455555566654
No 49
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.05 E-value=25 Score=26.89 Aligned_cols=19 Identities=47% Similarity=0.636 Sum_probs=13.7
Q ss_pred CCCCCcccCCc----ccceecccC
Q 029778 1 MSGGSTPVAGG----YMRQRHSQG 20 (188)
Q Consensus 1 ~~~~~~~~~g~----~~rq~~~q~ 20 (188)
|||+..| ||. .+|||.++.
T Consensus 2 ~s~~~~P-g~a~~~~~~Rqrk~~~ 24 (88)
T KOG3457|consen 2 MSGSRAP-GGAAATAGRRQRKSGK 24 (88)
T ss_pred CCCCCCC-CchhhHHHHHhccccc
Confidence 7888777 665 457887776
No 50
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=33.03 E-value=1.3e+02 Score=28.88 Aligned_cols=74 Identities=16% Similarity=0.392 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHH
Q 029778 56 VLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLL 135 (188)
Q Consensus 56 vfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~ 135 (188)
++++++|++--|..= -.++.+...+-++.-+..+.++=++.+++++.+ . ...|.+.+++++|+.|..
T Consensus 304 ~~y~~~~~iaGy~S~----~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~--------n-~i~~~~~ss~aipf~t~~ 370 (521)
T PF02990_consen 304 ILYALTSFIAGYVSA----RLYKSFGGKKWKKNSILTSLLFPGILFSIFFIL--------N-FIAWSYGSSSAIPFGTIL 370 (521)
T ss_pred HHHHHHhhHHHHHHH----HHHHHcCCCceeehhhHHHHHHHHHHHHHHHHH--------H-HHHHhhccccccchHHHH
Confidence 345555555555422 234444444433333333444443333333322 1 135667779999999998
Q ss_pred HHHHHHH
Q 029778 136 GVVSFFL 142 (188)
Q Consensus 136 gi~s~i~ 142 (188)
.+++...
T Consensus 371 ~l~~lw~ 377 (521)
T PF02990_consen 371 FLIALWF 377 (521)
T ss_pred HHHHHHH
Confidence 8877543
No 51
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=31.65 E-value=56 Score=25.85 Aligned_cols=29 Identities=10% Similarity=0.499 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhh---hhhc
Q 029778 87 RLPLYLGMVLVGLNVAFFFYTSMLVW---NVRR 116 (188)
Q Consensus 87 r~~f~lgll~l~i~~~i~~Y~~v~l~---~ik~ 116 (188)
.||+.+|.+++++.+ +++-++++++ +||+
T Consensus 13 EwFLF~~AIFiAItI-lYILLalL~EvPkYIK~ 44 (117)
T PF07234_consen 13 EWFLFFGAIFIAITI-LYILLALLFEVPKYIKE 44 (117)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHH
Confidence 377778888888874 3444444443 6664
No 52
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=30.95 E-value=3.5e+02 Score=23.31 Aligned_cols=111 Identities=8% Similarity=0.096 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCC----cchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhcc
Q 029778 51 EILENVLWIASALFIIYYGDRHSNFIYLLWHDERI----RRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCI 126 (188)
Q Consensus 51 ~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i----~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P 126 (188)
+++-+++-+.+++.+..+.+....= --+++.. ...-..+|++++.+...+.....+|.|++-|..+ ..-.=
T Consensus 72 ~qW~aL~lL~~Gv~lv~~~~~~~~~---~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~ 146 (244)
T PF04142_consen 72 RQWLALFLLVAGVVLVQLSSSQSSD---NSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWI 146 (244)
T ss_pred hhHHHHHHHHHHHheeecCCccccc---cccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHH
Confidence 3555777778888777766542200 0011111 1223356888887777778888888775554321 11112
Q ss_pred CchhHHHHHHHHHHHHH---------HhhhhhhhHHhhHHHHHHHHhHH
Q 029778 127 SALPYVTLLGVVSFFLL---------SFALWPIWSFLTLPLLFTLFMAS 166 (188)
Q Consensus 127 ~~iPiaT~~gi~s~i~f---------~iALWPVW~flTP~lLFt~FMGv 166 (188)
.-+..+..+.+.+.++. .-+++.-|++++-.+.+++-.|-
T Consensus 147 ~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gG 195 (244)
T PF04142_consen 147 QNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGG 195 (244)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhh
Confidence 23444555455554443 23466778888877777776444
No 53
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=30.94 E-value=85 Score=29.10 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhh---ccccchhhhhhhhc-CCCcchhHHHHHHHHHHHHHHHHHHHHhhh-hhhccccchhh
Q 029778 51 EILENVLWIASALFIIYY---GDRHSNFIYLLWHD-ERIRRLPLYLGMVLVGLNVAFFFYTSMLVW-NVRRFDEKWES 123 (188)
Q Consensus 51 ~~lhsvfWI~aai~v~YY---~DF~~nl~~vll~d-~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~-~ik~~~~~wE~ 123 (188)
++.-|++=|.++++++=+ .|+.+. .+-+.++ ....-.|+.+|+..+.+.+....|+..|.+ -+|++-++|+.
T Consensus 120 ~Qy~Sv~~iTiGiiIcTl~s~~d~~~~-~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~E 196 (330)
T KOG1583|consen 120 RQYSSVLMITIGIIICTLFSSKDGRSK-LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKE 196 (330)
T ss_pred hhhhhHHhhhhhheeEEeecCcchhhh-hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Confidence 577788888888877643 454331 1122333 223447788999999999999999999987 67777777754
No 54
>PF14143 YrhC: YrhC-like protein
Probab=30.35 E-value=1.2e+02 Score=22.20 Aligned_cols=43 Identities=9% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhh
Q 029778 100 NVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFA 146 (188)
Q Consensus 100 ~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iA 146 (188)
.++.++|+-...|.-... +...|.+.+...++...|+.|+..+
T Consensus 19 Avs~FlYiG~viP~~~~~----~~~~~~m~~~~~~~l~~a~~f~~rs 61 (72)
T PF14143_consen 19 AVSTFLYIGTVIPIGAKE----TAQKYIMMGAICIFLAGAFLFFRRS 61 (72)
T ss_pred HHHHHHHHHhhCCccchh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566665555521111 2333566666666666777776654
No 55
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=30.16 E-value=1.5e+02 Score=23.44 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHhh
Q 029778 131 YVTLLGVVSFFLLSFALWPIWSFLT 155 (188)
Q Consensus 131 iaT~~gi~s~i~f~iALWPVW~flT 155 (188)
++++++.++++...+.+..+.+|+.
T Consensus 28 ~~a~~~~~~g~~~gl~la~~~g~~a 52 (121)
T PF11990_consen 28 LAAGVGFVAGLVVGLPLALLTGWWA 52 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777777777774
No 56
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=30.09 E-value=3.2e+02 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=13.9
Q ss_pred hccccchhhhhhhhcCCCcchhHH
Q 029778 68 YGDRHSNFIYLLWHDERIRRLPLY 91 (188)
Q Consensus 68 Y~DF~~nl~~vll~d~~i~r~~f~ 91 (188)
.++..+|++ -+.|++....+..
T Consensus 81 ~gERl~all--sWrdP~aT~lf~~ 102 (156)
T PF08372_consen 81 QGERLQALL--SWRDPRATALFVV 102 (156)
T ss_pred HHHHHHHhh--ccCCccHHHHHHH
Confidence 456667764 3567877766654
No 57
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=29.76 E-value=38 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=20.5
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 029778 81 HDERIRRLPLYLGMVLVGLNVAFFFYTS 108 (188)
Q Consensus 81 ~d~~i~r~~f~lgll~l~i~~~i~~Y~~ 108 (188)
++..-.+.||| |..++++++..+.|++
T Consensus 10 e~~~sdqIWFY-G~~~ls~~m~~~tyli 36 (40)
T PF13106_consen 10 EECKSDQIWFY-GFFGLSIFMILFTYLI 36 (40)
T ss_pred cccccccEEEe-eHHHHHHHHHHHHHHH
Confidence 44555678888 8888888888888874
No 58
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=29.50 E-value=4e+02 Score=23.57 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=12.0
Q ss_pred hhhhHHhhHHHHHHHHh
Q 029778 148 WPIWSFLTLPLLFTLFM 164 (188)
Q Consensus 148 WPVW~flTP~lLFt~FM 164 (188)
|+..--+.+|++|..||
T Consensus 111 ~~~~r~~~fPl~~Llf~ 127 (267)
T TIGR03109 111 PRVARALAFPLAFLLFA 127 (267)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566677777777776
No 59
>TIGR02229 caa3_sub_IV caa(3)-type oxidase, subunit IV. This model represents a small set of proteins with weak similarity to the sequences in Pfam family pfam03626, which describes the cytochrome C oxidase subunit IV.
Probab=28.68 E-value=83 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=12.2
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHH
Q 029778 79 LWHDERIRRLPLYLGMVLVGLNVA 102 (188)
Q Consensus 79 ll~d~~i~r~~f~lgll~l~i~~~ 102 (188)
|.++++.+|..+..|++.+++.+.
T Consensus 60 Lk~e~~l~r~~~~~~~~~l~i~~~ 83 (92)
T TIGR02229 60 LKRAHALLRLASAVAFAILAILFV 83 (92)
T ss_pred hccccchHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544433
No 60
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=27.97 E-value=4.3e+02 Score=23.44 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHH
Q 029778 53 LENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYV 132 (188)
Q Consensus 53 lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPia 132 (188)
.+..||+...+++.+-.- .-..|.++.|++--++...+-+.+..++ +.+||.|+-..=++.
T Consensus 5 ~~~~f~l~lTl~~y~~a~---------~l~~r~~~~~l~PlLv~~~~li~~L~~~----------~i~Y~~Y~~g~~~i~ 65 (230)
T COG1346 5 TSPLFGLLLTLLAYFAAK---------RLYKRTKSPFLNPLLVATVLLIAFLLLF----------GISYEDYMKGGQWIN 65 (230)
T ss_pred HhHHHHHHHHHHHHHHHH---------HHHHhcCCcccchHHHHHHHHHHHHHHc----------CCCHHHHhcccHHHH
Confidence 456788888877665322 1236788888884444444433333333 346666666666666
Q ss_pred HHHHHHHHHHHHhhhhhhhHHh---hHHHHHHHHhHHHH
Q 029778 133 TLLGVVSFFLLSFALWPIWSFL---TLPLLFTLFMASMV 168 (188)
Q Consensus 133 T~~gi~s~i~f~iALWPVW~fl---TP~lLFt~FMGvv~ 168 (188)
-..+- ++++|.+-|+.-|.-+ -.+++-..+.|.++
T Consensus 66 ~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ 103 (230)
T COG1346 66 FLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSVV 103 (230)
T ss_pred HHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 6777888777766543 24455555555543
No 61
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=27.76 E-value=4.4e+02 Score=23.51 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=56.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHH--HHHHHHHHHHHHHHHHHHhhhhhhcc---c
Q 029778 44 PRAKTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLY--LGMVLVGLNVAFFFYTSMLVWNVRRF---D 118 (188)
Q Consensus 44 ~r~~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~--lgll~l~i~~~i~~Y~~v~l~~ik~~---~ 118 (188)
-|+|+..-.+.+++=+.+++.+.|+. +..+++....+-.+.. ++++++.++..++.|..-..+..+.- .
T Consensus 78 ~k~E~l~sl~~~~~i~~~g~~i~~~a------~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~A 151 (304)
T COG0053 78 GKAETLASLIVSILIFAAGFEILLEA------IKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIA 151 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35666677778888888888888874 3344443444443333 55555555655555553222222211 1
Q ss_pred cchhhhccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHH
Q 029778 119 EKWESFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPL 158 (188)
Q Consensus 119 ~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~l 158 (188)
+.|..+.....-++++.+++ +..++ |-|+=|+.
T Consensus 152 da~h~~sD~~ts~~~lvgl~-~~~~g------~~~lD~i~ 184 (304)
T COG0053 152 DALHHRSDVLTSLAVLVGLL-GSLLG------WPWLDPLA 184 (304)
T ss_pred HhHHHHHHHHHHHHHHHHHH-HHHhC------cHHHHHHH
Confidence 46777766555566655555 44434 55555543
No 62
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=27.72 E-value=2e+02 Score=25.51 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 029778 87 RLPLYLGMVLVGLNVAFFFYT 107 (188)
Q Consensus 87 r~~f~lgll~l~i~~~i~~Y~ 107 (188)
|++..+|+++.++++.+.+|+
T Consensus 232 r~~~~~g~~~~~~~~~~~~~~ 252 (325)
T PRK10714 232 RLLSLLGSIIAIGGFSLAVLL 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544
No 63
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=27.65 E-value=3.7e+02 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhccc
Q 029778 56 VLWIASALFIIYYGDR 71 (188)
Q Consensus 56 vfWI~aai~v~YY~DF 71 (188)
+-+++|-+..+.|+=.
T Consensus 183 vG~~LAv~aGvlyGs~ 198 (254)
T PF07857_consen 183 VGIILAVFAGVLYGSN 198 (254)
T ss_pred HhHHHHHHHHHHHhcc
Confidence 4667666666666543
No 64
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=27.41 E-value=3.6e+02 Score=25.35 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHHHhHHHHhhccc
Q 029778 94 MVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLFTLFMASMVIFPHS 173 (188)
Q Consensus 94 ll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~lLFt~FMGvv~~~~~~ 173 (188)
+=+..++....+=|..|++.-++. .| |.++-+-.+....+..|+.+|.|-+|.||..+--|-.-==.+.++-|+
T Consensus 207 lHa~lmt~Iti~Qc~~yeR~~q~v--s~----~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYi 280 (372)
T KOG3145|consen 207 LHAVLMTVITILQCFFYERGWQRV--SK----GIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYI 280 (372)
T ss_pred HHHHHHHHHHHHHHHhhhhccccc--ch----hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555566666676655543 22 457777778888889999999999998876654443322223344444
Q ss_pred ccee
Q 029778 174 MIGT 177 (188)
Q Consensus 174 ~~~~ 177 (188)
|-.+
T Consensus 281 PQa~ 284 (372)
T KOG3145|consen 281 PQAY 284 (372)
T ss_pred hHHh
Confidence 4433
No 65
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=27.22 E-value=2.7e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=19.1
Q ss_pred hccccchhhhhhhhcCCCcc-hhHHHHHHHHHH
Q 029778 68 YGDRHSNFIYLLWHDERIRR-LPLYLGMVLVGL 99 (188)
Q Consensus 68 Y~DF~~nl~~vll~d~~i~r-~~f~lgll~l~i 99 (188)
|+| +.|.+.+..|.+++. .+..+-.-...+
T Consensus 15 Ytd--~sFL~~l~~N~~~~~~~y~~~v~~~~~v 45 (282)
T PF06432_consen 15 YTD--PSFLEELRRNVNVRKYSYWELVLDSLVV 45 (282)
T ss_pred CCC--HHHHHHHHHccCcccCCHHHHHHHHHHH
Confidence 677 678888888888554 554444444443
No 66
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=27.22 E-value=1.6e+02 Score=22.41 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=3.7
Q ss_pred ecccCCCC
Q 029778 16 RHSQGYAS 23 (188)
Q Consensus 16 ~~~q~~~~ 23 (188)
|+.|.|++
T Consensus 4 r~~~~~~e 11 (90)
T PF11674_consen 4 RKLQDYEE 11 (90)
T ss_pred chhhhhhh
Confidence 34444544
No 67
>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional
Probab=26.86 E-value=4.9e+02 Score=23.72 Aligned_cols=29 Identities=24% Similarity=0.144 Sum_probs=23.1
Q ss_pred hhhccCchh-HHHHHHHHHHHHHHhhhhhh
Q 029778 122 ESFCISALP-YVTLLGVVSFFLLSFALWPI 150 (188)
Q Consensus 122 E~~~P~~iP-iaT~~gi~s~i~f~iALWPV 150 (188)
+...|..+| +.|+..+.|+++.+.|.--+
T Consensus 122 ~~~~~~~~pllnT~iLl~Ss~tvt~a~~a~ 151 (297)
T MTH00028 122 EALDPFAVPLLNTTILLSSGATVTWAHHAI 151 (297)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788 99999999999999887643
No 68
>PLN02436 cellulose synthase A
Probab=26.70 E-value=4.7e+02 Score=28.24 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=29.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhhhh----hhHHhhHHHHHHHHhHHHHhhccccc--eeccCCC
Q 029778 125 CISALPYVTLLGVVSFFLLSFALWP----IWSFLTLPLLFTLFMASMVIFPHSMI--GTLRPQN 182 (188)
Q Consensus 125 ~P~~iPiaT~~gi~s~i~f~iALWP----VW~flTP~lLFt~FMGvv~~~~~~~~--~~~~~~~ 182 (188)
.|-.+|.+|+. ++..+++..+++- .|+-+-++++=++|.+.|++. +.|+ |-|++++
T Consensus 990 S~L~iP~tti~-ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~-lyPf~kgL~gr~~ 1051 (1094)
T PLN02436 990 TSLLIPPTTLL-IINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVH-LYPFLKGLLGKQD 1051 (1094)
T ss_pred eeHhHHHHHHH-HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH-HHHHHHHHhccCC
Confidence 46677877765 4455555665553 333455555555555554443 3344 4555544
No 69
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=26.58 E-value=6.9e+02 Score=25.32 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=5.8
Q ss_pred HHH-HHHHHHHhhcc
Q 029778 57 LWI-ASALFIIYYGD 70 (188)
Q Consensus 57 fWI-~aai~v~YY~D 70 (188)
.|. +..+++.+..|
T Consensus 165 ~~~l~~i~~l~~~~~ 179 (742)
T TIGR01299 165 QWALFFVLGLALMAD 179 (742)
T ss_pred HHHHHHHHHHHHHHH
Confidence 443 33344444444
No 70
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=26.49 E-value=1.8e+02 Score=27.01 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHHHHHHHhhhh--h--------hhHHhhHHHHHHHHhH
Q 029778 127 SALPYVTLLGVVSFFLLSFALW--P--------IWSFLTLPLLFTLFMA 165 (188)
Q Consensus 127 ~~iPiaT~~gi~s~i~f~iALW--P--------VW~flTP~lLFt~FMG 165 (188)
+.+|....+-+.+.++-|..+| | ||.++.|+.++.+.+.
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~ 71 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLS 71 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4588888999999999999999 6 7889999888877654
No 71
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=26.23 E-value=2.6e+02 Score=23.02 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHH--HHHHHHHHHhhhhhhhHHhhHHHHHH
Q 029778 93 GMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLL--GVVSFFLLSFALWPIWSFLTLPLLFT 161 (188)
Q Consensus 93 gll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~--gi~s~i~f~iALWPVW~flTP~lLFt 161 (188)
.+-++.+.+..+++--...+.+|++.-.+|+ |-.-..+--. .++...|.....||+ -++|.++++
T Consensus 114 ~lp~~~~~~~~~~vDGl~~R~iRr~~~g~eS--p~~~h~a~~~~~~~~~~~~~lyL~lP~--~i~P~~~~l 180 (198)
T PF14348_consen 114 WLPLFLLFALAALVDGLVRRDIRRFGFGRES--PFVYHHAKRSVIPLLILPWVLYLSLPF--SIPPNLVPL 180 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHccc--ccChHHHHH
Confidence 3334444445555566667788876544432 3222222211 112222344555665 466665554
No 72
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.17 E-value=6.7e+02 Score=27.82 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcch---------------------hHHHHHHHHHHHHHHHHH
Q 029778 48 TWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRL---------------------PLYLGMVLVGLNVAFFFY 106 (188)
Q Consensus 48 ~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~---------------------~f~lgll~l~i~~~i~~Y 106 (188)
.+.+.+.-+.+|+..++.+|. .-.|+.=--.|+.-+.. ++.+|+....+-+ ++++
T Consensus 17 ~~~rrL~E~~gIlLlllAlfL---~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~-LL~~ 92 (1355)
T PRK10263 17 SSGRRLLEALLILIVLFAVWL---MAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV-IIVG 92 (1355)
T ss_pred chhHHHHHHHHHHHHHHHHHH---HHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH-HHHH
Q ss_pred HHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HhhhhhhhHH----------------------hhHHHHHHHH
Q 029778 107 TSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLL-SFALWPIWSF----------------------LTLPLLFTLF 163 (188)
Q Consensus 107 ~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f-~iALWPVW~f----------------------lTP~lLFt~F 163 (188)
+.+++.+-+.....+.......--++.+.++++.+++ .+...+.|.+ .+.+++++++
T Consensus 93 ~a~~l~R~r~~~~~l~~~~l~lRliGlLLLLLas~gLaa~~~~d~~~~~gGGIIG~lLs~lL~~LfG~vGa~LILLlllL 172 (1355)
T PRK10263 93 GCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWA 172 (1355)
T ss_pred HHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred hHHHHhh
Q 029778 164 MASMVIF 170 (188)
Q Consensus 164 MGvv~~~ 170 (188)
.|++++.
T Consensus 173 IGLiLlT 179 (1355)
T PRK10263 173 AGLTLFT 179 (1355)
T ss_pred HHHHHHH
No 73
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=25.26 E-value=3.8e+02 Score=21.92 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhh-----hhhhhHHhh-HHHHH
Q 029778 88 LPLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFA-----LWPIWSFLT-LPLLF 160 (188)
Q Consensus 88 ~~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iA-----LWPVW~flT-P~lLF 160 (188)
.|+...++..++..++.+-+.-+.--.+....++++++..........++...+++.|= =|+-|-.+| |--++
T Consensus 64 ~W~~~~~l~~~~~~gll~G~~Sl~~i~~~l~~~~~~~~~~~~~~~~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l~ 142 (168)
T PF07099_consen 64 IWFDFLLLLSFALFGLLLGFLSLYLILKILRRRLHRQRNGWWIWLFIILISFLSSFGIYLGRFLRLNSWDILTNPQSLI 142 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccchhHHhCCHHHHH
Confidence 56665555444444443333222221222223343333333344444444444444442 388888874 44333
No 74
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=25.03 E-value=3.2e+02 Score=20.99 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.4
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029778 80 WHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVR 115 (188)
Q Consensus 80 l~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik 115 (188)
..+++ .|++ |.+.+.+++.+++-+..|.++-+
T Consensus 75 ~~~~~-~~~~---a~~e~~ls~~lF~~~~~y~R~r~ 106 (109)
T PF09842_consen 75 WSDPG-ERWL---AWLELLLSVLLFVGAMLYARWRG 106 (109)
T ss_pred hcCcc-hhHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555 4444 88888888899999999988544
No 75
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.95 E-value=4.4e+02 Score=22.51 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=42.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHHHhHHHH-hhcccccee
Q 029778 125 CISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLFTLFMASMV-IFPHSMIGT 177 (188)
Q Consensus 125 ~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~lLFt~FMGvv~-~~~~~~~~~ 177 (188)
.|.-.|.+..-+..-...+..|+|=-=--||.+.-+.|+.++|. .++++|.|+
T Consensus 107 ~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslSyiP~g~ 160 (175)
T KOG2887|consen 107 SPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLSYIPFGR 160 (175)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 36777877766666677788899887788999999999999964 678999864
No 76
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=1.8e+02 Score=23.62 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hhhcc-ccchhhhccCchhHHHHHHHHHHHHHHh
Q 029778 90 LYLGMVLVGLNVAFFFYTSMLVW---NVRRF-DEKWESFCISALPYVTLLGVVSFFLLSF 145 (188)
Q Consensus 90 f~lgll~l~i~~~i~~Y~~v~l~---~ik~~-~~~wE~~~P~~iPiaT~~gi~s~i~f~i 145 (188)
.......+++...++.|. .|+| .||+. ..+||-.. =|+..++.++.++.+|+
T Consensus 63 ~a~vftivaif~~~ya~~-lY~kRa~~Ir~R~~~pyDD~~---GP~lv~vvL~valivNf 118 (126)
T COG5264 63 SAYVFTIVAIFCGFYALM-LYLKRAVNIRQRSAGPYDDRL---GPTLVCVVLLVALIVNF 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCcccc---CCchhHHHHHHHHHHHH
Confidence 334444455555555555 3455 45543 24555432 35555555555555554
No 77
>PF06177 QueT: QueT transporter; InterPro: IPR010387 This entry is represented by Bacteriophage Dp-1, QueT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes [, ], suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.
Probab=24.70 E-value=3.7e+02 Score=21.95 Aligned_cols=78 Identities=12% Similarity=0.257 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHH-HHHHH---HHHHhhhhhhhHHhhHHHHHHHHh
Q 029778 89 PLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLL-GVVSF---FLLSFALWPIWSFLTLPLLFTLFM 164 (188)
Q Consensus 89 ~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~-gi~s~---i~f~iALWPVW~flTP~lLFt~FM 164 (188)
+-.+-+++.++...+++|+.++.+...+. +|-+..=..++.+... ++++. +.++..+|+.|.....-=+.....
T Consensus 62 ~G~iD~i~G~l~tlia~~l~~~~~~~~~~--~~~~~~l~~l~~~l~~a~~V~~~L~~~~~~pf~~~~~~v~~ge~i~~~l 139 (152)
T PF06177_consen 62 FGIIDVIFGTLATLIAAYLTYKLKKKIKN--RWARYILASLVPVLVNAFIVGAELSYLFGLPFWATYLSVALGEFISMVL 139 (152)
T ss_pred chhHHHhhhHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 33445666667777888888777754432 2322223334444444 33332 344556677776666555555555
Q ss_pred HHHH
Q 029778 165 ASMV 168 (188)
Q Consensus 165 Gvv~ 168 (188)
|...
T Consensus 140 G~~l 143 (152)
T PF06177_consen 140 GYPL 143 (152)
T ss_pred HHHH
Confidence 5443
No 78
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.69 E-value=3.3e+02 Score=29.32 Aligned_cols=18 Identities=6% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 029778 52 ILENVLWIASALFIIYYG 69 (188)
Q Consensus 52 ~lhsvfWI~aai~v~YY~ 69 (188)
.+...+|=+.|+..++|.
T Consensus 852 Yl~~~~yp~~sip~liY~ 869 (1079)
T PLN02638 852 YVNTTIYPITSIPLLLYC 869 (1079)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446777778888777774
No 79
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=24.63 E-value=1.6e+02 Score=26.52 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 029778 137 VVSFFLLSF 145 (188)
Q Consensus 137 i~s~i~f~i 145 (188)
+++.+++..
T Consensus 238 l~a~~~~~r 246 (256)
T PF09788_consen 238 LIALICLIR 246 (256)
T ss_pred HHHHHHHHH
Confidence 333333333
No 80
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=24.13 E-value=1.9e+02 Score=27.12 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhhhh--------------hhhHHh
Q 029778 89 PLYLGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFALW--------------PIWSFL 154 (188)
Q Consensus 89 ~f~lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iALW--------------PVW~fl 154 (188)
...+|.+...+.+++.-+--..-+.-.+.+ .=|...++-+.+|.++|+.|. |||+++= |-+.--
T Consensus 136 ~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~-~~efn~~kGl~iAv~sGv~Sa-~fn~g~~ag~pi~~~a~a~G~~~l~~~ 213 (344)
T PF06379_consen 136 IVLLGVAVCLIGIAICGKAGSMKEKELGEE-AKEFNFKKGLIIAVLSGVMSA-CFNFGLDAGKPIHEAAVAAGVNPLYAN 213 (344)
T ss_pred hhhhHHHHHHHHHHHHhHHHHhhhhhhccc-hhhhhhhhhHHHHHHHHHHHH-HHHHHHHcCCcHHHHHHHcCCCcHHHh
Confidence 344555555555566555543333222221 225566899999999999987 4676541 112222
Q ss_pred hHHHHHHHHhHHHHhhccccc
Q 029778 155 TLPLLFTLFMASMVIFPHSMI 175 (188)
Q Consensus 155 TP~lLFt~FMGvv~~~~~~~~ 175 (188)
-|.....+.=|+++=..|-++
T Consensus 214 l~~~vvv~~GGf~tN~~yc~~ 234 (344)
T PF06379_consen 214 LPVYVVVLWGGFITNLIYCLI 234 (344)
T ss_pred CchhhhhhhhHHHHHHHHHHH
Confidence 344455555566555555444
No 81
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.62 E-value=3.3e+02 Score=21.40 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhhccc-cchhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 029778 42 SIPRAKTWVEILENVLWIASALFIIYYGDR-HSNFIYLLW-HDERIRRLPLYLGMVLVGLNVAFFFYTS 108 (188)
Q Consensus 42 ~~~r~~~w~~~lhsvfWI~aai~v~YY~DF-~~nl~~vll-~d~~i~r~~f~lgll~l~i~~~i~~Y~~ 108 (188)
+.+..+..++.+-.++=++.|++.+.+.=+ .. .-.. ..+...|..+-+....+++..-+++|..
T Consensus 68 ~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~---~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~ 133 (142)
T PF11712_consen 68 PAQELKSVKRQLSTVFNILVSVFAVFFAGWYWA---GYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIR 133 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555555444444433211 11 1112 2344555555555555555556666663
No 82
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=23.41 E-value=48 Score=17.62 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.9
Q ss_pred cCCCCCCC
Q 029778 19 QGYASSGD 26 (188)
Q Consensus 19 q~~~~~~d 26 (188)
|+-..+.|
T Consensus 4 rgH~~eeD 11 (15)
T PF10529_consen 4 RGHREEED 11 (15)
T ss_pred Cccccccc
Confidence 55544444
No 83
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=23.39 E-value=5.5e+02 Score=23.15 Aligned_cols=31 Identities=6% Similarity=-0.119 Sum_probs=17.2
Q ss_pred cCchhHHHHHHHHHHHHHHhhhhhhhHHhhH
Q 029778 126 ISALPYVTLLGVVSFFLLSFALWPIWSFLTL 156 (188)
Q Consensus 126 P~~iPiaT~~gi~s~i~f~iALWPVW~flTP 156 (188)
|.-+....++++.+.+++...++.-|..+.-
T Consensus 384 p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 414 (442)
T TIGR00908 384 PGGILTPGVALVLACVALVTGFYVDPRVVVG 414 (442)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 3334456666666666666666655544433
No 84
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=23.16 E-value=4.5e+02 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=16.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHH
Q 029778 43 IPRAKTWVEILENVLWIASALFII 66 (188)
Q Consensus 43 ~~r~~~w~~~lhsvfWI~aai~v~ 66 (188)
.++...|++++.++++++.+.++.
T Consensus 104 ~~~r~~~~~~~~~~~~~i~~~~~~ 127 (260)
T PF03631_consen 104 RERRSFWKRRLIALLFLIILGVLL 127 (260)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH
Confidence 334447889999999986554443
No 85
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=23.07 E-value=2.6e+02 Score=21.09 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.7
Q ss_pred CCCcchhHH-HHHHHHHHHHHHHHHH
Q 029778 83 ERIRRLPLY-LGMVLVGLNVAFFFYT 107 (188)
Q Consensus 83 ~~i~r~~f~-lgll~l~i~~~i~~Y~ 107 (188)
-.++++|.+ ++.+++|++..+-+|+
T Consensus 66 ~~ir~~w~~i~~t~~vgvs~glPLyL 91 (97)
T PF11196_consen 66 LGIRHWWLYIVLTFFVGVSFGLPLYL 91 (97)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHH
Confidence 356777776 6777788888888887
No 86
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=93 Score=29.39 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=24.7
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 029778 77 YLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNVRR 116 (188)
Q Consensus 77 ~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~ik~ 116 (188)
+|-.+|++...++. +|.+++.+-++|+||= +|=.++|.
T Consensus 179 YVW~yep~~~~~~v-l~~~fvl~tlaivLFP-LWP~~mR~ 216 (372)
T KOG2927|consen 179 YVWIYEPRPLMWQV-LGVLFVLVTLAIVLFP-LWPRRMRQ 216 (372)
T ss_pred EEEeccCCchhHHH-HHHHHHHHHHHHHhcc-cCcHHHhc
Confidence 35567777776665 4566666777888876 45446764
No 87
>PRK05415 hypothetical protein; Provisional
Probab=22.40 E-value=2.4e+02 Score=26.24 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 029778 47 KTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVW 112 (188)
Q Consensus 47 ~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~ 112 (188)
+.|++-+-+.+=.+.+..+.--.|+.. .++ .+.-|+..+...+...+++..-.++..+
T Consensus 64 ~~w~~~~~~~l~~l~~~~~~~~~~~i~----~~~----~~~~wlg~~~~~~~~~~~~~~~~~~~rE 121 (341)
T PRK05415 64 SLWRKLLWGGLGLLGSLVVGQAVQWLR----DAF----QRSDWLGLGAAVVGALIVLAGLGIVVRE 121 (341)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556544333333333333433356522 223 3345555443333333344444444444
No 88
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=22.34 E-value=4.4e+02 Score=25.00 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHHHHHHhhh-hhhccccchhhhccCchh---HHHHHHHHHHHHHH---hhhhhhhH
Q 029778 102 AFFFYTSMLVW-NVRRFDEKWESFCISALP---YVTLLGVVSFFLLS---FALWPIWS 152 (188)
Q Consensus 102 ~i~~Y~~v~l~-~ik~~~~~wE~~~P~~iP---iaT~~gi~s~i~f~---iALWPVW~ 152 (188)
.+.+++.+.+. ++|+.|++|++.+-.-.- +.-+.|+++++... ..+||.++
T Consensus 22 Gl~~~~~i~e~~~~rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~f~~g~~wp~f~ 79 (436)
T PF01654_consen 22 GLALLLAILETLYYRTGDPRYDRLARFWGKLFAINFAVGVVTGTVMEFQFGTNWPRFS 79 (436)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33344433333 667677777766554333 34444555555443 45788877
No 89
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=22.23 E-value=70 Score=22.91 Aligned_cols=20 Identities=15% Similarity=0.007 Sum_probs=15.6
Q ss_pred hccCchhHHHHHHHHHHHHH
Q 029778 124 FCISALPYVTLLGVVSFFLL 143 (188)
Q Consensus 124 ~~P~~iPiaT~~gi~s~i~f 143 (188)
..|.++|+..++|++.+.|.
T Consensus 2 ~~pel~PL~~~vg~a~~~a~ 21 (73)
T PF06522_consen 2 KHPELYPLFVIVGVAVGGAT 21 (73)
T ss_pred CCccccchHHHHHHHHHHHH
Confidence 45888999888888877664
No 90
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.08 E-value=30 Score=32.18 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhhhhhccccchhhhccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHHHH
Q 029778 110 LVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLF 160 (188)
Q Consensus 110 ~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~lLF 160 (188)
|+|..|++-..| +.+=.-+++|..+.+.++||+-=-=-|+|-+.=.
T Consensus 125 Ym~lLr~~GAs~-----WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL 170 (381)
T PF05297_consen 125 YMWLLRELGASF-----WTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDL 170 (381)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555543333 4555567788888889999987766677765433
No 91
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=21.73 E-value=2.2e+02 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred HHHHHHhhhhhhhHHhhHHHHHHHHhHHHH
Q 029778 139 SFFLLSFALWPIWSFLTLPLLFTLFMASMV 168 (188)
Q Consensus 139 s~i~f~iALWPVW~flTP~lLFt~FMGvv~ 168 (188)
-.+.+-+++++..+|+||++-++++..++-
T Consensus 230 y~~~lPf~l~~~~~~~~~~~~~l~~~~~~g 259 (293)
T PF01062_consen 230 YLLLLPFGLVDSLGWLTPPITFLVSFFFLG 259 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556899999999999988877665543
No 92
>PHA02898 virion envelope protein; Provisional
Probab=21.51 E-value=2.9e+02 Score=21.27 Aligned_cols=52 Identities=6% Similarity=-0.038 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 029778 56 VLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLVWNV 114 (188)
Q Consensus 56 vfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l~~i 114 (188)
.+=++++..+.=|+||.+| +++ ....|=.+..++..+.+++.+=+.+|.-|-
T Consensus 18 GIiLL~~ACIfAfidfSK~------~~~-~~~~wRalSii~FIlgivl~lG~~ifs~y~ 69 (92)
T PHA02898 18 GIILLIVACICAYIELSKS------EKP-ADSALRSISIISFILAIILILGIIFFKGYN 69 (92)
T ss_pred HHHHHHHHHHHheehhhcC------CCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777888998554 112 255676666666666655555554454433
No 93
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=21.36 E-value=5.7e+02 Score=23.50 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=15.9
Q ss_pred HHHHHHHHHHH----HHhhhhhhhHHhhHHHH
Q 029778 132 VTLLGVVSFFL----LSFALWPIWSFLTLPLL 159 (188)
Q Consensus 132 aT~~gi~s~i~----f~iALWPVW~flTP~lL 159 (188)
-++..+++..| ..+..+|+|++++++.+
T Consensus 225 ~~~l~~~a~l~~~~~~i~~~~~~~~ll~ll~~ 256 (303)
T COG1575 225 YAALLVVAYLAIVIFVILGLFPVWGLLFLLAL 256 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 34444444443 35568999986655544
No 94
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=21.29 E-value=66 Score=28.47 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCCCcccCCcccce--------ecccCCCCCCCCccccccCCCC
Q 029778 2 SGGSTPVAGGYMRQ--------RHSQGYASSGDDLEDDACSRPQ 37 (188)
Q Consensus 2 ~~~~~~~~g~~~rq--------~~~q~~~~~~dd~~~d~~~~~~ 37 (188)
+|||+|.|+|.=|- -.+||.+..+=|+|+|..+.++
T Consensus 103 ~~~ssl~g~~SRR~~ipa~~sSs~YQRL~~~D~deeee~~S~~~ 146 (235)
T PF11359_consen 103 EGGSSLFGSGSRRGRIPAGCSSSKYQRLENRDYDEEEEEASAAR 146 (235)
T ss_pred ccccccCCCCcccccCCCCccccccccccccccccccccchhhh
Confidence 47888887765443 3578886633355555554444
No 95
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=21.17 E-value=5e+02 Score=25.71 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=46.3
Q ss_pred hhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhh-----h--hhhccccchhhhccCchhHHHHHHHHHHHHHHh
Q 029778 75 FIYLLWHDERIRRLPLYLGMVLVGLNVAFFFYTSMLV-----W--NVRRFDEKWESFCISALPYVTLLGVVSFFLLSF 145 (188)
Q Consensus 75 l~~vll~d~~i~r~~f~lgll~l~i~~~i~~Y~~v~l-----~--~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~i 145 (188)
+.++...+.+..+.+..+..+-+++...+++|.|+-. + ..||...+=+.| +-.-.+.+++|++.+.+++
T Consensus 325 l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lY--r~F~n~l~~~Vvas~~~i~ 400 (518)
T KOG2568|consen 325 LARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLY--RKFTNTLAFSVVASFAFIL 400 (518)
T ss_pred HHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777778888888888888887652 1 344555666665 5566777777777766553
No 96
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=20.82 E-value=7.1e+02 Score=25.79 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=18.0
Q ss_pred hhcCCCcchhHHHHHHHHH--HHHHHHHHHHHhhh
Q 029778 80 WHDERIRRLPLYLGMVLVG--LNVAFFFYTSMLVW 112 (188)
Q Consensus 80 l~d~~i~r~~f~lgll~l~--i~~~i~~Y~~v~l~ 112 (188)
+++ -.+++|+.+.+++++ +-+.+++|..-|.-
T Consensus 19 ~k~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t 52 (762)
T PRK03776 19 WKA-GRNTWWFAATLTVLGLFVVLNITLFASDYFT 52 (762)
T ss_pred Hhc-ccccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455 446666665665555 44455555555544
No 97
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.64 E-value=1.7e+02 Score=26.01 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhh
Q 029778 137 VVSFFLLSFALWP 149 (188)
Q Consensus 137 i~s~i~f~iALWP 149 (188)
+++.+++..++|-
T Consensus 240 ~~~~~~~~~~~~~ 252 (325)
T PRK10714 240 IIAIGGFSLAVLL 252 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555553
No 98
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.52 E-value=14 Score=27.68 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHH
Q 029778 52 ILENVLWIASALFII 66 (188)
Q Consensus 52 ~lhsvfWI~aai~v~ 66 (188)
+-...||++..++++
T Consensus 63 kKrrwlwLlikl~lV 77 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLV 77 (81)
T ss_dssp --------TTTTHCC
T ss_pred ccchhHHHHHHHHHH
Confidence 334679998887765
No 99
>PLN02400 cellulose synthase
Probab=20.40 E-value=3.2e+02 Score=29.42 Aligned_cols=55 Identities=15% Similarity=-0.001 Sum_probs=28.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhhhh----hhHHhhHHHHHHHHhHHHHhhccccc--eeccCC
Q 029778 125 CISALPYVTLLGVVSFFLLSFALWP----IWSFLTLPLLFTLFMASMVIFPHSMI--GTLRPQ 181 (188)
Q Consensus 125 ~P~~iPiaT~~gi~s~i~f~iALWP----VW~flTP~lLFt~FMGvv~~~~~~~~--~~~~~~ 181 (188)
.|-.+|.+|+.. +-.+++..|++- .|+-+-++++=++|.+.|++. +.|+ |-|.++
T Consensus 980 s~L~iP~ttl~l-lNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~-l~Pf~kgL~gR~ 1040 (1085)
T PLN02400 980 TSLLIPPTTVLL-VNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAH-LYPFLKGLLGRQ 1040 (1085)
T ss_pred cchhHHHHHHHH-HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH-HHHHHHHHhccC
Confidence 377788877654 344555555552 233455555555555554443 3444 445443
No 100
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=20.25 E-value=3.7e+02 Score=21.94 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=15.0
Q ss_pred hhhhcCCCcchhHH---HHHHHHHHHHHHHHHHH
Q 029778 78 LLWHDERIRRLPLY---LGMVLVGLNVAFFFYTS 108 (188)
Q Consensus 78 vll~d~~i~r~~f~---lgll~l~i~~~i~~Y~~ 108 (188)
++.-++-.|-.||. .....+-++.++.+|..
T Consensus 77 K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~ 110 (130)
T PF08627_consen 77 KKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKM 110 (130)
T ss_pred HHHHhhcccchHHHHHhcccceehHHHHHHHHHH
Confidence 34445555555554 33333444555555553
No 101
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=20.20 E-value=3.2e+02 Score=20.31 Aligned_cols=19 Identities=16% Similarity=0.642 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029778 92 LGMVLVGLNVAFFFYTSML 110 (188)
Q Consensus 92 lgll~l~i~~~i~~Y~~v~ 110 (188)
+|.+.+.++.+++.|=++|
T Consensus 6 vG~~~l~~a~~vF~YYt~W 24 (78)
T PF07297_consen 6 VGLLMLAVALSVFTYYTIW 24 (78)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6888888888888887776
No 102
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=20.08 E-value=3.1e+02 Score=24.46 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=41.4
Q ss_pred chhhhccCchhHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHHHhHHHHhhccc
Q 029778 120 KWESFCISALPYVTLLGVVSFFLLSFALWPIWSFLTLPLLFTLFMASMVIFPHS 173 (188)
Q Consensus 120 ~wE~~~P~~iPiaT~~gi~s~i~f~iALWPVW~flTP~lLFt~FMGvv~~~~~~ 173 (188)
.+|.. ..+|+--+.+.++++.=.+-+..-|.=+++.=++..++|++.++-=.
T Consensus 236 ~fd~~--~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV 287 (300)
T PF05653_consen 236 RFDTS--LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGV 287 (300)
T ss_pred hccce--EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 45554 47889999999999998999999999999988888888887665433
Done!