Query 029778
Match_columns 188
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aff_B MKI67 FHA domain intera 30.9 4.6 0.00016 26.2 -1.7 32 2-33 5-37 (44)
2 4aw6_A CAAX prenyl protease 1 22.8 3.4E+02 0.012 24.8 8.6 31 150-182 200-230 (482)
3 4aps_A DI-OR tripeptide H+ sym 22.4 3.3E+02 0.011 22.5 8.5 17 130-146 355-371 (491)
4 2ww9_C Protein transport prote 17.1 70 0.0024 23.3 2.1 12 6-17 5-16 (87)
5 3kp9_A Vkorc1/thioredoxin doma 16.9 3.2E+02 0.011 23.1 6.6 27 129-155 70-103 (291)
6 1jb0_X Photosystem I subunit P 14.3 1.3E+02 0.0043 18.5 2.4 15 93-107 16-30 (35)
7 4djk_A Probable glutamate/gamm 13.0 6.2E+02 0.021 21.5 7.7 20 131-150 415-434 (511)
8 3j1z_P YIIP, cation efflux fam 12.7 5.6E+02 0.019 21.2 7.0 58 44-107 78-137 (306)
9 2nr1_A NR1 M2, M2; receptor, s 12.0 1E+02 0.0034 18.0 1.4 14 141-154 7-20 (27)
10 3h90_A Ferrous-iron efflux pum 11.6 5.6E+02 0.019 20.6 6.5 58 44-107 69-128 (283)
No 1
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=30.90 E-value=4.6 Score=26.23 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCCCcccCCc-ccceecccCCCCCCCCcccccc
Q 029778 2 SGGSTPVAGG-YMRQRHSQGYASSGDDLEDDAC 33 (188)
Q Consensus 2 ~~~~~~~~g~-~~rq~~~q~~~~~~dd~~~d~~ 33 (188)
|-|+|||--- .+.+|+||..+=-+||+++|..
T Consensus 5 sq~~TPVCtptflerrkS~~~~mndDd~D~EIv 37 (44)
T 2aff_B 5 SQGPTPVCTPTFLERRKSQVAELNDDDKDDEIV 37 (44)
T ss_dssp TTSCCCCCCHHHHHHHHHHHHHCCGGGGSCSEE
T ss_pred cCCCCCccchhhhhcchhhhhhccCCCccceEE
Confidence 5678999866 8899999998743455555554
No 2
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=22.81 E-value=3.4e+02 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred hhHHhhHHHHHHHHhHHHHhhccccceeccCCC
Q 029778 150 IWSFLTLPLLFTLFMASMVIFPHSMIGTLRPQN 182 (188)
Q Consensus 150 VW~flTP~lLFt~FMGvv~~~~~~~~~~~~~~~ 182 (188)
.|.+.+.+.++..+.-=.++.|+ +.++.|-.
T Consensus 200 ~w~~~~~~~l~~~~iyP~~I~PL--fnk~~Pl~ 230 (482)
T 4aw6_A 200 AWLFTLVVSLVLVTIYADYIAPL--FDKFTPLP 230 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH--HSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--cCCCccCC
Confidence 45555666666655555666663 46787763
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=22.41 E-value=3.3e+02 Score=22.50 Aligned_cols=17 Identities=0% Similarity=-0.185 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHhh
Q 029778 130 PYVTLLGVVSFFLLSFA 146 (188)
Q Consensus 130 PiaT~~gi~s~i~f~iA 146 (188)
....+..++..+++...
T Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (491)
T 4aps_A 355 TKFAVGLMFAGLSFLLM 371 (491)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 4
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=17.07 E-value=70 Score=23.29 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=0.0
Q ss_pred cccCCcccceec
Q 029778 6 TPVAGGYMRQRH 17 (188)
Q Consensus 6 ~~~~g~~~rq~~ 17 (188)
+|+||+..-+|.
T Consensus 5 ~~~gg~r~~~rr 16 (87)
T 2ww9_C 5 VPPGGQRILQKR 16 (87)
T ss_dssp ------------
T ss_pred CCCCCccchhhc
Confidence 888888643333
No 5
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=16.92 E-value=3.2e+02 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhh-------hhHHhh
Q 029778 129 LPYVTLLGVVSFFLLSFALWP-------IWSFLT 155 (188)
Q Consensus 129 iPiaT~~gi~s~i~f~iALWP-------VW~flT 155 (188)
+|.+....+.-......++.| -|.|+.
T Consensus 70 iP~~~~G~~~y~~v~~l~~~~~~~~~~~~~~~~~ 103 (291)
T 3kp9_A 70 IPTAAVGLLGFLGVLALAVLPDGLPLVKRWRWPA 103 (291)
T ss_dssp EEHHHHHHHHHHHHHHHHHCC--CTTCSTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 687777666555555555544 366654
No 6
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=14.26 E-value=1.3e+02 Score=18.47 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 029778 93 GMVLVGLNVAFFFYT 107 (188)
Q Consensus 93 gll~l~i~~~i~~Y~ 107 (188)
++++++||..+..|-
T Consensus 16 alllLaINflVAayY 30 (35)
T 1jb0_X 16 AVLLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999998887763
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=13.01 E-value=6.2e+02 Score=21.47 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 029778 131 YVTLLGVVSFFLLSFALWPI 150 (188)
Q Consensus 131 iaT~~gi~s~i~f~iALWPV 150 (188)
+..++.+.+.+.+.+.+||.
T Consensus 415 ~~~~~~~~~~~~~~~~~~p~ 434 (511)
T 4djk_A 415 VAIVGLLTSIMAFIVSFLPP 434 (511)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHeeeeCC
Confidence 45556666666677777774
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=12.70 E-value=5.6e+02 Score=21.16 Aligned_cols=58 Identities=17% Similarity=0.365 Sum_probs=36.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchhH--HHHHHHHHHHHHHHHHH
Q 029778 44 PRAKTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLPL--YLGMVLVGLNVAFFFYT 107 (188)
Q Consensus 44 ~r~~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~f--~lgll~l~i~~~i~~Y~ 107 (188)
.|.|..--.+.+++-+.+++.++|.. ++.+++.+.+..... .++++++.++...+.|+
T Consensus 78 ~R~E~l~al~~~~~l~~~~~~i~~ea------i~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (306)
T 3j1z_P 78 GKAEPLAALAQSAFIMGSAFLLLFYG------GERLLNPSPVENATLGVVVSVVAIVLTLALVLLQ 137 (306)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH------HHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh------hhheecCCCccccccchhhhhhHhhhhHHHHHHH
Confidence 35666667788888888888888864 345566666655443 34555555555554444
No 9
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=11.95 E-value=1e+02 Score=17.97 Aligned_cols=14 Identities=43% Similarity=0.871 Sum_probs=10.4
Q ss_pred HHHHhhhhhhhHHh
Q 029778 141 FLLSFALWPIWSFL 154 (188)
Q Consensus 141 i~f~iALWPVW~fl 154 (188)
+.++-|+|=+||-+
T Consensus 7 ~~l~aa~wF~WGvl 20 (27)
T 2nr1_A 7 LTLSSAMWFSWGVL 20 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhh
Confidence 45677889888864
No 10
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=11.57 E-value=5.6e+02 Score=20.62 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=36.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcCCCcchh--HHHHHHHHHHHHHHHHHH
Q 029778 44 PRAKTWVEILENVLWIASALFIIYYGDRHSNFIYLLWHDERIRRLP--LYLGMVLVGLNVAFFFYT 107 (188)
Q Consensus 44 ~r~~~w~~~lhsvfWI~aai~v~YY~DF~~nl~~vll~d~~i~r~~--f~lgll~l~i~~~i~~Y~ 107 (188)
.|.|...-.+.+++=+.+++.++|.. ++.+.+.+.+...+ +.++++++.+|...+.|+
T Consensus 69 ~r~E~l~~l~~~~~l~~~~~~i~~ea------i~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~ 128 (283)
T 3h90_A 69 GKAESLAALAQSMFISGSALFLFLTG------IQHLISPTPMTDPGVGVIVTIVALICTIILVSFQ 128 (283)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH------HHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777887777788887753 33445555555432 556777777777666655
Done!