Query 029778
Match_columns 188
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 05:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 45.5 7.1 0.00051 21.2 2.3 19 144-162 4-22 (26)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 30.6 20 0.0015 19.3 2.6 19 150-168 3-21 (27)
3 d1pv7a_ f.38.1.2 (A:) Lactose 23.4 1.2E+02 0.0085 21.4 7.4 20 149-168 311-330 (417)
4 d1uaza_ f.13.1.1 (A:) Archaerh 18.0 1.9E+02 0.014 21.7 7.9 26 80-105 9-34 (236)
5 d1r7ma2 d.95.2.1 (A:121-225) D 17.8 24 0.0017 23.9 1.5 15 152-166 11-25 (105)
6 d1v89a_ b.55.1.1 (A:) Rho-GTPa 11.1 25 0.0018 22.3 0.0 15 2-16 3-17 (118)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 10.5 72 0.0052 18.4 2.0 15 53-67 9-23 (37)
8 d1fftc_ f.25.1.1 (C:) Cytochro 10.1 77 0.0056 22.7 2.6 16 131-146 53-68 (185)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 9.8 82 0.0059 25.9 2.9 45 134-178 8-64 (509)
10 d2r6gf2 f.58.1.1 (F:261-504) M 9.1 3.1E+02 0.023 19.5 6.0 84 72-158 1-91 (244)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=45.45 E-value=7.1 Score=21.19 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=15.3
Q ss_pred HhhhhhhhHHhhHHHHHHH
Q 029778 144 SFALWPIWSFLTLPLLFTL 162 (188)
Q Consensus 144 ~iALWPVW~flTP~lLFt~ 162 (188)
+.|+|--|.|+..++-..|
T Consensus 4 slaiw~fw~ffalli~ylq 22 (26)
T d1rzhh2 4 SLAIYSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5689999999988876655
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.55 E-value=20 Score=19.29 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.7
Q ss_pred hhHHhhHHHHHHHHhHHHH
Q 029778 150 IWSFLTLPLLFTLFMASMV 168 (188)
Q Consensus 150 VW~flTP~lLFt~FMGvv~ 168 (188)
+-||...+..||+.++.|+
T Consensus 3 ~lgwv~llvvftwsiamvv 21 (27)
T d2e74h1 3 VLGWVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHhhheeeeEE
Confidence 3478899999999988765
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=23.44 E-value=1.2e+02 Score=21.44 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=9.7
Q ss_pred hhhHHhhHHHHHHHHhHHHH
Q 029778 149 PIWSFLTLPLLFTLFMASMV 168 (188)
Q Consensus 149 PVW~flTP~lLFt~FMGvv~ 168 (188)
+.|..+...+++..++|...
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 34444444455555555543
No 4
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=18.03 E-value=1.9e+02 Score=21.68 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=15.9
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHH
Q 029778 80 WHDERIRRLPLYLGMVLVGLNVAFFF 105 (188)
Q Consensus 80 l~d~~i~r~~f~lgll~l~i~~~i~~ 105 (188)
+.|.+-...|+-++.++.+++..+++
T Consensus 9 ~~~~~~~~~wl~~~~~~m~~~tv~f~ 34 (236)
T d1uaza_ 9 LGDGRPETLWLGIGTLLMLIGTFYFI 34 (236)
T ss_dssp TSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCeeehHHHHHHHHHHHHHHHH
Confidence 56666667777666666655544443
No 5
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.77 E-value=24 Score=23.89 Aligned_cols=15 Identities=33% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHhhHHHHHHHHhHH
Q 029778 152 SFLTLPLLFTLFMAS 166 (188)
Q Consensus 152 ~flTP~lLFt~FMGv 166 (188)
-+|||.-|..|||+=
T Consensus 11 ~~Ltp~~LA~W~MDD 25 (105)
T d1r7ma2 11 NYLTPMSLAYWFMDD 25 (105)
T ss_dssp HHCCHHHHHHHHHHH
T ss_pred hhCCHHHHHheEecC
Confidence 479999999999963
No 6
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.10 E-value=25 Score=22.31 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=10.8
Q ss_pred CCCCcccCCccccee
Q 029778 2 SGGSTPVAGGYMRQR 16 (188)
Q Consensus 2 ~~~~~~~~g~~~rq~ 16 (188)
||+++|++-|+|.++
T Consensus 3 ~g~s~~~k~G~L~K~ 17 (118)
T d1v89a_ 3 SGSSGPIKMGWLKKQ 17 (118)
T ss_dssp CSSSCEEEEEEEEEE
T ss_pred CCCCCCeEEEEEEEE
Confidence 577788888877443
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=10.51 E-value=72 Score=18.36 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHh
Q 029778 53 LENVLWIASALFIIY 67 (188)
Q Consensus 53 lhsvfWI~aai~v~Y 67 (188)
.--+||+..+..|.|
T Consensus 9 ~ly~Fw~FFagLi~Y 23 (37)
T d1eysh2 9 TIWAFWLFFFGLIIY 23 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345799999888877
No 8
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=10.14 E-value=77 Score=22.72 Aligned_cols=16 Identities=25% Similarity=0.137 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 029778 131 YVTLLGVVSFFLLSFA 146 (188)
Q Consensus 131 iaT~~gi~s~i~f~iA 146 (188)
+.|+..++|+++...|
T Consensus 53 ~nT~vLl~SS~~~~~a 68 (185)
T d1fftc_ 53 VETFLLLFSSITYGMA 68 (185)
T ss_dssp HHHHHHGGGTTTTTSG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555554443
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=9.82 E-value=82 Score=25.93 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhhhhhhH------------HhhHHHHHHHHhHHHHhhccccceec
Q 029778 134 LLGVVSFFLLSFALWPIWS------------FLTLPLLFTLFMASMVIFPHSMIGTL 178 (188)
Q Consensus 134 ~~gi~s~i~f~iALWPVW~------------flTP~lLFt~FMGvv~~~~~~~~~~~ 178 (188)
..++.|.+++++++=++|. |+-|-+++..+.|+=+++=-+.+|..
T Consensus 8 ~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~ 64 (509)
T d2a65a1 8 LGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRY 64 (509)
T ss_dssp HHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5689999999999999993 67788888888888666655566665
No 10
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.11 E-value=3.1e+02 Score=19.47 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred cchhhhhhhhcCCCcchhHH-------HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhccCchhHHHHHHHHHHHHHH
Q 029778 72 HSNFIYLLWHDERIRRLPLY-------LGMVLVGLNVAFFFYTSMLVWNVRRFDEKWESFCISALPYVTLLGVVSFFLLS 144 (188)
Q Consensus 72 ~~nl~~vll~d~~i~r~~f~-------lgll~l~i~~~i~~Y~~v~l~~ik~~~~~wE~~~P~~iPiaT~~gi~s~i~f~ 144 (188)
++|+ ..+++|++..+.+.+ .+.+.+.+++.+.+-+++.+...+..-.++ ..---.+|.++- .+++++.+.
T Consensus 1 f~NY-~~~f~d~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~-~~~~~~~p~~ip-~~v~~~~~~ 77 (244)
T d2r6gf2 1 WKNF-TRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAV-YRVLLILPYAVP-SFISILIFK 77 (244)
T ss_dssp TTTT-SGGGTCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHH-HHHHTTHHHHSC-HHHHHHHHH
T ss_pred CccH-HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHH-HHHHHHHHHHhh-HHHHHHHHH
Q ss_pred hhhhhhhHHhhHHH
Q 029778 145 FALWPIWSFLTLPL 158 (188)
Q Consensus 145 iALWPVW~flTP~l 158 (188)
..+-|..|.+...+
T Consensus 78 ~~~~~~~g~~~~~l 91 (244)
T d2r6gf2 78 GLFNQSFGEINMML 91 (244)
T ss_dssp HHTCSSSSHHHHHH
T ss_pred HHHhccccchhhhh
Done!