Query 029779
Match_columns 188
No_of_seqs 106 out of 478
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 2.1E-45 4.6E-50 290.9 16.5 154 24-182 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 3.5E-40 7.5E-45 259.2 14.7 148 17-170 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.6 2.2E-06 4.7E-11 65.3 12.4 141 20-176 3-143 (144)
4 KOG4016 Synaptic vesicle prote 67.5 75 0.0016 26.8 13.7 143 17-179 19-167 (233)
5 PF07077 DUF1345: Protein of u 41.9 1.8E+02 0.004 23.4 8.1 75 4-94 32-106 (180)
6 PF05702 Herpes_UL49_5: Herpes 29.7 1.4E+02 0.0029 22.1 4.6 50 134-183 36-85 (98)
7 PF06376 DUF1070: Protein of u 23.5 71 0.0015 19.0 1.8 13 111-123 13-25 (34)
8 KOG3088 Secretory carrier memb 23.2 3.5E+02 0.0075 24.0 6.7 64 106-183 201-264 (313)
9 PRK10263 DNA translocase FtsK; 22.1 1E+03 0.022 25.7 14.7 35 150-184 154-188 (1355)
10 PF08078 PsaX: PsaX family; I 15.4 1.6E+02 0.0035 17.7 2.1 14 72-85 20-33 (37)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=2.1e-45 Score=290.95 Aligned_cols=154 Identities=44% Similarity=0.722 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccceeecCCCcccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhHhccCCCchh
Q 029779 24 VGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAK 103 (188)
Q Consensus 24 l~LR~~a~~~~l~a~~vM~t~~q~~~~~~~~~~~~~~~~a~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~~~~~ 103 (188)
++||+++++++++|+++|+||+|+.++..+ .+++++||+|+++|+|+|++|+|+|+|+++|++++++.++++...
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~----~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~- 75 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQ----LITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF- 75 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecc----cceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-
Confidence 479999999999999999999999988621 378899999999999999999999999999999998755544333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029779 104 RLLLYFAFWDVVMLGIVASATGASGGVGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGVSLLAAVLLVLLSMLSSYSL 182 (188)
Q Consensus 104 ~~~~~~f~~Dqv~ayLL~saasAAa~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~~~s~lSa~~L 182 (188)
...|++|++||+++|+++||++||+++++++++||+|.+|+|+|+++++||||+.+|++++|+|++++++++++|++++
T Consensus 76 ~~~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 76 FKLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=3.5e-40 Score=259.24 Aligned_cols=148 Identities=36% Similarity=0.598 Sum_probs=137.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccceeecCCCcccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 029779 17 ENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVV 96 (188)
Q Consensus 17 ~~~~~~~l~LR~~a~~~~l~a~~vM~t~~q~~~~~~~~~~~~~~~~a~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~ 96 (188)
|+.+..+++||+++++++++|+++|++|+||.++. .++.+++|+|+++|+|+|++|+|+|+|+++|++.+++.+
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~------~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~ 74 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVF------SIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSL 74 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceee------ccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999886 688899999999999999999999999999999998745
Q ss_pred c-CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccchhhhccchhhhhhhHHHHHHHHHHHHHH
Q 029779 97 S-KPASAKRLLLYFAFWDVVMLGIVASATGASGGVGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGVSLLAAVL 170 (188)
Q Consensus 97 ~-~~~~~~~~~~~~f~~Dqv~ayLL~saasAAa~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~ 170 (188)
. ++.+++...|++|++||+++||++|+++||+++++++++||+|.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 75 ~~~~~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 75 SRGKLRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred HccCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 3 3344567799999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.55 E-value=2.2e-06 Score=65.27 Aligned_cols=141 Identities=16% Similarity=0.034 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccceeecCCCcccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhHhccCC
Q 029779 20 FGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKP 99 (188)
Q Consensus 20 ~~~~l~LR~~a~~~~l~a~~vM~t~~q~~~~~~~~~~~~~~~~a~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~~~ 99 (188)
+....+||+++++++++.+.+++....+... ......++..|.+.+.++...+++.-++..... .+.
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~ 69 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGSQ------------IYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS-LKY 69 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhcccc------------ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 4467899999999999999999987643222 134455778899999999999988877765432 111
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 029779 100 ASAKRLLLYFAFWDVVMLGIVASATGASGGVGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGVSLLAAVLLVLLSM 176 (188)
Q Consensus 100 ~~~~~~~~~~f~~Dqv~ayLL~saasAAa~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~~~s~ 176 (188)
..+....+..+..|.+++.+-+.+..+-+.-..-.+.+++ +.+-+...++-|+...++.+++|+.++.+..+.+
T Consensus 70 ~~~~~~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 70 RPRIPWPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1222334568899999999888765443332211111111 2223344567899999999999999999988765
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=75 Score=26.78 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=82.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcccceeecCCCcccccceeeeec-chhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 029779 17 ENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFT-DSPAFIYFVAALSVACLYSIITMLASLSV 95 (188)
Q Consensus 17 ~~~~~~~l~LR~~a~~~~l~a~~vM~t~~q~~~~~~~~~~~~~~~~a~f~-~~~af~ylv~an~i~~~Ysllql~~~~~~ 95 (188)
.-++....++|++..+|+++-.--+.+.--...-. ..+..--|+ +..+.+|=+++-+.+++=+++-+.+..+.
T Consensus 19 tF~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~------~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f 92 (233)
T KOG4016|consen 19 TFLRKPQTILRVVSWLFSLIVFGSIVNEGYLNSAS------SGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYF 92 (233)
T ss_pred HHhcCchhHHHHHHHHHHHhheeeeccccccCccc------CCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567889999999999887665555432222111 122223354 78899999999999999888888887752
Q ss_pred cc-CCCc-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccchhh---hccchhhhhhhHHHHHHHHHHHHHH
Q 029779 96 VS-KPAS-AKRLLLYFAFWDVVMLGIVASATGASGGVGYIGLKGNSHSRWTK---ICNVYDKYCRHIGSATGVSLLAAVL 170 (188)
Q Consensus 96 ~~-~~~~-~~~~~~~~f~~Dqv~ayLL~saasAAa~i~~l~~~G~~~~~W~~---vC~~~~~FC~~~~~Si~lsflA~~~ 170 (188)
-+ .+.+ +++.. +.|.++..|-.- -==.+..++.. +|.. --+..+ -+.+.++|..+|++.+.
T Consensus 93 ~qISsv~~RkraV----l~Dl~~Salwtf--lwfvGFc~l~n------qwqvs~p~~~~~~--a~saraaIafsffSils 158 (233)
T KOG4016|consen 93 PQISSVKDRKRAV----LADLGVSALWAF--LWFVGFCFLAN------QWQVSKPKENPLG--AGSARAAIAFSFFSILS 158 (233)
T ss_pred hhhcccchhHHHH----HHHHHHHHHHHH--HHHHHHHHHHH------HhhccCCCCCCcC--cchHHHHHHHHHHHHHH
Confidence 22 1222 23322 445544333200 00012223221 3421 011222 34788999999999888
Q ss_pred HHHHHHHHH
Q 029779 171 LVLLSMLSS 179 (188)
Q Consensus 171 ~~~~s~lSa 179 (188)
-...+++.-
T Consensus 159 W~~~A~lA~ 167 (233)
T KOG4016|consen 159 WGGQAVLAF 167 (233)
T ss_pred HHHHHHHHH
Confidence 888777653
No 5
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=41.91 E-value=1.8e+02 Score=23.39 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHhcccceeecCCCcccccceeeeecchhHHHHHHHHHHHHHH
Q 029779 4 EAPAKYEDQRAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACL 83 (188)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~LR~~a~~~~l~a~~vM~t~~q~~~~~~~~~~~~~~~~a~f~~~~af~ylv~an~i~~~ 83 (188)
..++++++..+.++.-+...+.+=+.+...++++++....+.+.... ..+...-.++...+...
T Consensus 32 ~~~~~~r~~a~~ed~~~~~~~~~~~~a~~asl~ai~~~l~~~~~~~~----------------~~~~~~~~la~~tv~~s 95 (180)
T PF07077_consen 32 ADPERTRRRARREDEGRWVILLLVLVAAFASLVAIVLLLASAKDLSG----------------AAKALHIALALATVVLS 95 (180)
T ss_pred CCHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhCCCCCc----------------chhHHHHHHHHHHHHHH
Confidence 46677777555555555666666666667777777766665543211 12446667788888899
Q ss_pred HHHHHHHHHhH
Q 029779 84 YSIITMLASLS 94 (188)
Q Consensus 84 Ysllql~~~~~ 94 (188)
|.+++..+.++
T Consensus 96 W~~ih~~FAl~ 106 (180)
T PF07077_consen 96 WLLIHTVFALH 106 (180)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 6
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=29.67 E-value=1.4e+02 Score=22.10 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=36.9
Q ss_pred hhcCCCccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029779 134 GLKGNSHSRWTKICNVYDKYCRHIGSATGVSLLAAVLLVLLSMLSSYSLY 183 (188)
Q Consensus 134 ~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~~~s~lSa~~L~ 183 (188)
.+.++.+.-|.+-|+.-|-.-+...++.++=|++.+...+..+.-+||..
T Consensus 36 ~~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aC 85 (98)
T PF05702_consen 36 AREESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRAC 85 (98)
T ss_pred hHhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456799999988877888888888888887777776666777654
No 7
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=23.49 E-value=71 Score=19.05 Aligned_cols=13 Identities=8% Similarity=-0.133 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHh
Q 029779 111 FWDVVMLGIVASA 123 (188)
Q Consensus 111 ~~Dqv~ayLL~sa 123 (188)
..||.++|+|+-+
T Consensus 13 aiDqgiay~Lm~~ 25 (34)
T PF06376_consen 13 AIDQGIAYMLMLV 25 (34)
T ss_pred hhhHHHHHHHHHH
Confidence 5799999999764
No 8
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.25 E-value=3.5e+02 Score=23.97 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029779 106 LLYFAFWDVVMLGIVASATGASGGVGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGVSLLAAVLLVLLSMLSSYSLY 183 (188)
Q Consensus 106 ~~~~f~~Dqv~ayLL~saasAAa~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsflA~~~~~~~s~lSa~~L~ 183 (188)
+.|.++++|....++ +|.+ -+|....+|.+-=+. |- ...+.-++-++.++++-+.+++|.+-+-
T Consensus 201 ~FFF~y~~q~~~~v~-----qAvg-----f~g~~~~G~i~ai~~---~~-~~i~v~i~m~i~a~~Ft~~av~~i~~i~ 264 (313)
T KOG3088|consen 201 AFFFTYFFQIVFCVF-----QAVG-----FPGWGLCGWIPAIDV---LS-GNIAVGILMLIGAGLFTLEAVLSIWVLQ 264 (313)
T ss_pred HHHHHHHHHHHHHHH-----HHHc-----cCCcchhhhhhHhhc---cC-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446899887777 2222 344434456543333 32 4444445667888888888888876543
No 9
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.11 E-value=1e+03 Score=25.66 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=20.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029779 150 YDKYCRHIGSATGVSLLAAVLLVLLSMLSSYSLYL 184 (188)
Q Consensus 150 ~~~FC~~~~~Si~lsflA~~~~~~~s~lSa~~L~~ 184 (188)
...+-+..++-+++.++-++++.+..-+|-..+.+
T Consensus 154 L~~LfG~vGa~LILLlllLIGLiLlTglSwlsIle 188 (1355)
T PRK10263 154 LQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAE 188 (1355)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444556666666666666666666666555443
No 10
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=15.41 E-value=1.6e+02 Score=17.69 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 029779 72 IYFVAALSVACLYS 85 (188)
Q Consensus 72 ~ylv~an~i~~~Ys 85 (188)
..++++|-++++|=
T Consensus 20 ~llLaINflVAayY 33 (37)
T PF08078_consen 20 LLLLAINFLVAAYY 33 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36788999988874
Done!