Query 029779
Match_columns 188
No_of_seqs 106 out of 478
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 11.2 3E+02 0.01 17.2 3.7 30 63-92 24-53 (59)
2 1jb0_X Photosystem I subunit P 7.7 2.4E+02 0.0083 15.9 1.9 14 72-85 17-30 (35)
3 2y69_J Cytochrome C oxidase po 7.2 5E+02 0.017 17.3 3.7 31 62-92 44-74 (80)
4 2k9p_A Pheromone alpha factor 6.9 5.8E+02 0.02 16.9 6.5 53 62-120 5-61 (80)
5 2yfv_C SCM3, KLLA0F05115P; cel 6.1 96 0.0033 20.0 -0.4 18 140-157 35-52 (63)
6 2lg4_A Aurelin; antimicrobial 8.2 1.2E+02 0.0042 17.8 0.0 14 144-157 9-22 (40)
7 3qoe_A Heterocyst differentiat 5.7 1.5E+02 0.0051 24.3 0.4 13 111-123 18-30 (302)
8 2e2s_A Agelenin; cystine knot, 5.6 1.3E+02 0.0046 17.0 0.1 10 147-156 3-12 (36)
9 3ns4_A Vacuolar protein sortin 4.7 5.2E+02 0.018 21.3 3.1 23 149-171 23-45 (271)
10 1emz_A Envelope glycoprotein E 3.7 2E+02 0.0068 15.3 -0.1 15 129-147 9-23 (26)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=11.20 E-value=3e+02 Score=17.23 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=24.1
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHHHHHH
Q 029779 63 AKFTDSPAFIYFVAALSVACLYSIITMLAS 92 (188)
Q Consensus 63 a~f~~~~af~ylv~an~i~~~Ysllql~~~ 92 (188)
-.=+|.--|++.++..+++.+|++-++...
T Consensus 24 gg~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 24 GGATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778999999999999999888754
No 2
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=7.69 E-value=2.4e+02 Score=15.90 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 029779 72 IYFVAALSVACLYS 85 (188)
Q Consensus 72 ~ylv~an~i~~~Ys 85 (188)
..++++|-++++|=
T Consensus 17 lllLaINflVAayY 30 (35)
T 1jb0_X 17 VLLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36889999998874
No 3
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.20 E-value=5e+02 Score=17.30 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=24.9
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHHHHHHH
Q 029779 62 KAKFTDSPAFIYFVAALSVACLYSIITMLAS 92 (188)
Q Consensus 62 ~a~f~~~~af~ylv~an~i~~~Ysllql~~~ 92 (188)
+-.=+|.--|.+.++..+++.+|++-++...
T Consensus 44 Kggrsd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 44 KGGATDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788999999999999999888754
No 4
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=6.91 E-value=5.8e+02 Score=16.88 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=26.0
Q ss_pred eeeecchhHHHHHH----HHHHHHHHHHHHHHHHHhHhccCCCchhhHHHHHHHHHHHHHHHH
Q 029779 62 KAKFTDSPAFIYFV----AALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLGIV 120 (188)
Q Consensus 62 ~a~f~~~~af~ylv----~an~i~~~Ysllql~~~~~~~~~~~~~~~~~~~~f~~Dqv~ayLL 120 (188)
+.+|.+.++|+--- ...+...+=+++-++.. +++.|+++++ +|++.|+...+.
T Consensus 5 ~v~f~~ld~~~~~~~~~~I~~G~~iGAs~llliil-~lltkkrrsp-----iF~lN~~~L~l~ 61 (80)
T 2k9p_A 5 TITFDELQGLVNSTVTQAILFGVRSGAAALTLIVV-WITSRSRKTP-----IFIINQVSLFLI 61 (80)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCCSCCC-----HHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccCh-----hhHHHHHHHHHH
Confidence 46677777773222 22233344444444322 3444433333 467777765554
No 5
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=6.14 E-value=96 Score=20.02 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.0
Q ss_pred ccchhhhccchhhhhhhH
Q 029779 140 HSRWTKICNVYDKYCRHI 157 (188)
Q Consensus 140 ~~~W~~vC~~~~~FC~~~ 157 (188)
+..|..+|..|++|-+++
T Consensus 35 K~~w~~Ii~KY~~~edqg 52 (63)
T 2yfv_C 35 KRVWSQIIQKYESIDNQG 52 (63)
T ss_dssp HHHHHHHHHHHHSGGGSS
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 346999999999887654
No 6
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=8.17 E-value=1.2e+02 Score=17.77 Aligned_cols=14 Identities=21% Similarity=0.916 Sum_probs=11.0
Q ss_pred hhhccchhhhhhhH
Q 029779 144 TKICNVYDKYCRHI 157 (188)
Q Consensus 144 ~~vC~~~~~FC~~~ 157 (188)
+.+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 34688999999876
No 7
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=5.65 E-value=1.5e+02 Score=24.28 Aligned_cols=13 Identities=38% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHh
Q 029779 111 FWDVVMLGIVASA 123 (188)
Q Consensus 111 ~~Dqv~ayLL~sa 123 (188)
.+||+|.||-|||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999998876
No 8
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=5.62 E-value=1.3e+02 Score=17.03 Aligned_cols=10 Identities=20% Similarity=0.849 Sum_probs=6.6
Q ss_pred ccchhhhhhh
Q 029779 147 CNVYDKYCRH 156 (188)
Q Consensus 147 C~~~~~FC~~ 156 (188)
|-+.++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 5667777763
No 9
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=4.75 E-value=5.2e+02 Score=21.33 Aligned_cols=23 Identities=0% Similarity=-0.012 Sum_probs=19.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHH
Q 029779 149 VYDKYCRHIGSATGVSLLAAVLL 171 (188)
Q Consensus 149 ~~~~FC~~~~~Si~lsflA~~~~ 171 (188)
.+..||++...+++-.|+.-+..
T Consensus 23 Y~rnFcDK~ve~~~~~Fi~~Ii~ 45 (271)
T 3ns4_A 23 YKWNFLDKVIDIMTTNFVSNTIR 45 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998843
No 10
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=3.73 E-value=2e+02 Score=15.28 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=7.1
Q ss_pred hhhhhhhcCCCccchhhhc
Q 029779 129 GVGYIGLKGNSHSRWTKIC 147 (188)
Q Consensus 129 ~i~~l~~~G~~~~~W~~vC 147 (188)
+++|....| +|-|++
T Consensus 9 glayfsm~g----nWaKVl 23 (26)
T 1emz_A 9 GIAYFSMVG----NWAKXX 23 (26)
T ss_dssp HHHHHHHHH----HHHC--
T ss_pred HHHHHHHhh----HHhhhc
Confidence 345555555 576665
Done!