Query 029779
Match_columns 188
No_of_seqs 106 out of 478
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029779.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029779hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 8.5 1.1E+02 0.0078 15.1 1.9 14 73-86 12-25 (29)
2 d2bbga_ g.6.1.1 (A:) Amb V all 4.1 85 0.0062 16.5 -0.1 9 147-155 19-27 (40)
3 d1oede_ f.36.1.1 (E:) Acetylch 3.3 4.6E+02 0.033 18.1 3.7 15 141-155 220-234 (260)
4 d1oedb_ f.36.1.1 (B:) Acetylch 2.8 5.4E+02 0.039 17.6 3.6 14 142-155 211-224 (250)
5 d1f16a_ f.1.4.1 (A:) Proapopto 2.8 4.4E+02 0.032 18.2 2.9 33 110-152 135-167 (192)
6 d1ppje2 f.23.12.1 (E:1-69) Iro 2.7 4.2E+02 0.03 15.6 2.2 16 113-128 32-47 (69)
7 d1oxwa_ c.19.1.3 (A:) Patatin 2.5 1.9E+02 0.014 21.4 0.4 24 144-167 40-63 (360)
8 d1mmca_ g.3.1.2 (A:) Antimicro 2.4 1.9E+02 0.014 14.1 0.2 10 147-156 21-30 (30)
9 d1bdsa_ g.9.1.1 (A:) BDs-I def 2.4 1.7E+02 0.012 15.5 -0.1 7 141-147 33-39 (43)
10 d2drpa1 g.37.1.1 (A:103-139) T 2.2 3.6E+02 0.027 13.8 1.2 17 144-160 11-31 (37)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=8.46 E-value=1.1e+02 Score=15.09 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH
Q 029779 73 YFVAALSVACLYSI 86 (188)
Q Consensus 73 ylv~an~i~~~Ysl 86 (188)
-++++|-++++|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888888754
No 2
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=4.07 E-value=85 Score=16.51 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=6.2
Q ss_pred ccchhhhhh
Q 029779 147 CNVYDKYCR 155 (188)
Q Consensus 147 C~~~~~FC~ 155 (188)
|++.+++|-
T Consensus 19 cspigkycv 27 (40)
T d2bbga_ 19 CSPIGKYCV 27 (40)
T ss_dssp ECSSSSSCE
T ss_pred cccccCEEE
Confidence 577777764
No 3
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.35 E-value=4.6e+02 Score=18.14 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=7.3
Q ss_pred cchhhhccchhhhhh
Q 029779 141 SRWTKICNVYDKYCR 155 (188)
Q Consensus 141 ~~W~~vC~~~~~FC~ 155 (188)
..|..+-...||+|-
T Consensus 220 ~eW~~vA~viDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKVIDKACF 234 (260)
T ss_dssp ------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 458888888999774
No 4
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.83 E-value=5.4e+02 Score=17.55 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=7.0
Q ss_pred chhhhccchhhhhh
Q 029779 142 RWTKICNVYDKYCR 155 (188)
Q Consensus 142 ~W~~vC~~~~~FC~ 155 (188)
.|..+....||+|-
T Consensus 211 EW~~vA~VlDRlfl 224 (250)
T d1oedb_ 211 DWQYVAMVADRLFL 224 (250)
T ss_dssp -----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888888664
No 5
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.82 E-value=4.4e+02 Score=18.24 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccchhhhccchhh
Q 029779 110 AFWDVVMLGIVASATGASGGVGYIGLKGNSHSRWTKICNVYDK 152 (188)
Q Consensus 110 f~~Dqv~ayLL~saasAAa~i~~l~~~G~~~~~W~~vC~~~~~ 152 (188)
-+.|.+.-|+-= --..++.++| .|..+|..|+.
T Consensus 135 ~i~~~~~~fl~~------~l~~WI~~~G----GW~g~~~~f~~ 167 (192)
T d1f16a_ 135 TIMGWTLDFLRE------RLLGWIQDQG----GWDGLLSYFGT 167 (192)
T ss_dssp HHHHHHHHHHHH------TTTHHHHHTC----STHHHHHHCCC
T ss_pred HHHHHHHHHHHh------hHHHHHHHCC----CHHHHHHHcCC
Confidence 355666666521 1134677787 79999887753
No 6
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.71 E-value=4.2e+02 Score=15.58 Aligned_cols=16 Identities=13% Similarity=-0.053 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhhh
Q 029779 113 DVVMLGIVASATGASG 128 (188)
Q Consensus 113 Dqv~ayLL~saasAAa 128 (188)
.+.+.||+..+++.+.
T Consensus 32 Rk~fsYl~~g~~~v~~ 47 (69)
T d1ppje2 32 RKGFSYLVTATTTVGV 47 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHH
Confidence 3678898866644433
No 7
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}
Probab=2.50 E-value=1.9e+02 Score=21.36 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=20.0
Q ss_pred hhhccchhhhhhhHHHHHHHHHHH
Q 029779 144 TKICNVYDKYCRHIGSATGVSLLA 167 (188)
Q Consensus 144 ~~vC~~~~~FC~~~~~Si~lsflA 167 (188)
.++|+.||-+|.-..+|++.++++
T Consensus 40 ~~~~d~fD~i~GTS~Gaiia~~la 63 (360)
T d1oxwa_ 40 ARLADYFDVIGGTSTGGLLTAMIS 63 (360)
T ss_dssp CCHHHHCSEEEECTHHHHHHHHHH
T ss_pred CChhhhCCEEEEecHHHHHHHHHH
Confidence 467888999999999998887765
No 8
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=2.40 E-value=1.9e+02 Score=14.12 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=5.1
Q ss_pred ccchhhhhhh
Q 029779 147 CNVYDKYCRH 156 (188)
Q Consensus 147 C~~~~~FC~~ 156 (188)
|+.-+++|.|
T Consensus 21 cg~gpkycgr 30 (30)
T d1mmca_ 21 CGKGPKYCGR 30 (30)
T ss_dssp EESSHHHHCC
T ss_pred ccCCccccCC
Confidence 4444566653
No 9
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=2.39 E-value=1.7e+02 Score=15.47 Aligned_cols=7 Identities=43% Similarity=1.493 Sum_probs=5.0
Q ss_pred cchhhhc
Q 029779 141 SRWTKIC 147 (188)
Q Consensus 141 ~~W~~vC 147 (188)
..|+.+|
T Consensus 33 ykwpnic 39 (43)
T d1bdsa_ 33 YKWPNIC 39 (43)
T ss_dssp EETTEEE
T ss_pred ccCCccc
Confidence 3688887
No 10
>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=2.23 E-value=3.6e+02 Score=13.79 Aligned_cols=17 Identities=29% Similarity=0.837 Sum_probs=10.4
Q ss_pred hhhccc----hhhhhhhHHHH
Q 029779 144 TKICNV----YDKYCRHIGSA 160 (188)
Q Consensus 144 ~~vC~~----~~~FC~~~~~S 160 (188)
-++|+. ...||.+.-.|
T Consensus 11 C~~C~r~YTHISNFCRHyvtS 31 (37)
T d2drpa1 11 CKVCSRVYTHISNFCRHYVTS 31 (37)
T ss_dssp CTTTCCEESSHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHhh
Confidence 356753 45799886543
Done!