BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029780
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 276 bits (707), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 128/187 (68%), Positives = 159/187 (85%), Gaps = 1/187 (0%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIG
Sbjct: 52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
LP I+KAGV+HKINFIES+A+ LD LL+ E+EGS+D+ FVDADK NY YHERLMKL+
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171
Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
KVGGI YDNTLWGGTVA PE +VPD F +R+A+++LN+ LA DPR+++ H+ LGDGI
Sbjct: 172 KVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230
Query: 182 TICRRIF 188
T CRR++
Sbjct: 231 TFCRRLY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 239 bits (611), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 147/187 (78%)
Query: 1 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
+M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60 IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119
Query: 61 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
GLP+IKKAGVDHKI+F E AL VLD+++K +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179
Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
+KVGG+ YDNTLW G+V P + + R +L+LN++LA DPR+++ + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239
Query: 181 ITICRRI 187
ITICRRI
Sbjct: 240 ITICRRI 246
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M AP+ Q M ML+RL AKK +E+G FTGYS L +L +P+DGQ+ D+N +
Sbjct: 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHERLM 118
P ++A +HKI AL L LL NEG FD+ F+DADK NY NY+E +
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYELAL 157
Query: 119 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 178
KL+ G+ DN W G V P + G +R+ I LN+ + +D RV +S +A+
Sbjct: 158 KLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIA 211
Query: 179 DGITICRRI 187
DG+ + + I
Sbjct: 212 DGMFLVQPI 220
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 11/185 (5%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M +P+ Q + +L+ L AK+ +EIGVF GYS L AL +P DGQI A D + I
Sbjct: 54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
+KAGV KI+ AL+ L+QL + + FD F+DADK NY Y+E + LL
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLL 172
Query: 122 KVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 179
+ GG+ V DN LW G V P+E + Q + NR LA D RV++S + LGD
Sbjct: 173 RRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPLGD 224
Query: 180 GITIC 184
G+T+
Sbjct: 225 GMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 7/181 (3%)
Query: 7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 66
+ QL+A L RL+ AKK +++G FTGYS L AL +P DG++ +V+ + E+G P+ +
Sbjct: 56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR 115
Query: 67 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 126
+A +HKI+ AL LD+LL E G+FD A VDADK+N Y+ER ++LL+ GGI
Sbjct: 116 QAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGI 174
Query: 127 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 186
LW G V P + + + + +LN + D RV +S + LGDG+T+ +
Sbjct: 175 LAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228
Query: 187 I 187
I
Sbjct: 229 I 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 63
TAP+ QL+A+L++L AKK I+IG FTGYS + L +P+DG + DV+ ++ +
Sbjct: 48 TAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKE 107
Query: 64 IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 123
+KAG+ KI S A L +L+ ++ +D ++DADK N Y+E +KLL+
Sbjct: 108 YWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLRE 166
Query: 124 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 183
GG+ DN L G VA E Q ++ Q I N+ + D RV + +GDG+T+
Sbjct: 167 GGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTL 220
Query: 184 CRR 186
R+
Sbjct: 221 ARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M +P+ GQ + +L ++ AK+ IEIG FTGYS L A +PEDG+I DV+ E +
Sbjct: 42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLL----------KYSENEGSFDYAFVDADKDNYC 111
K+ G+++KI AL L L+ ++ S D F+DADK+NY
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161
Query: 112 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 171
NY+ ++KLLK GG+ + DN LW G+VA Q P S I N + +D V
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVD 215
Query: 172 LSHVALGDGITICRR 186
+S V + DG+++ R+
Sbjct: 216 VSLVPIADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 64
A + GQ +A+L+RL AK+ +EIG GYS + A +P DGQ+ ++ + ++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 65 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 124
++ AGVD ++ E AL L+ L + +FD F+DADK N +Y ++ + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 125 GIAVYDNTLWGGTVAVPE 142
+ + DN + G V P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 64
+P G+ + +L+++ A+ +EIG GYS + A + G++ ++ + + +I
Sbjct: 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 65 IKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLMKLLK 122
I++A ++ ++ AL L Q+ ENE FD+ F+DADK N Y E +KL +
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDADKQNNPAYFEWALKLSR 158
Query: 123 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 170
G + + DN V E +V D+ R Q I +A +PRV
Sbjct: 159 PGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 74
LL+ + +EIG GYS + A +PE I +I+ + YE +K G++ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 75 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134
+ +AL + ++L Y FD F+DA K Y + + ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 135 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 184
G VA E +H R +D N+ L + P+ +GDGI I
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 70
L+ L+R N K +EIG GYS A +I +D +T I+ N + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 71 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130
++++ IE AL + + N+ +D F+DA K + E LLK G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 131 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 184
N L+ G V+ + R ++ + D N L P + + + DG+ I
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 47 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106
Query: 69 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 126
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 127 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
+ DN + GT PD + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 47 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 106
Query: 69 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 126
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 127 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
+ DN + GT PD + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 49 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 108
Query: 69 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 126
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 109 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 167
Query: 127 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
+ DN + GT PD + RGSS
Sbjct: 168 LLADNVIVPGT--------PDFLAYVRGSS 189
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M G+++ +++ +E+G + GYS + A + ++ I++N + I
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 119
++ AGV K+ + + ++ QL K + + + D F+D KD Y L +
Sbjct: 99 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 120 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
LL+ G + + DN + G PD H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M G+++ +++ +E+G + GYS + A + ++ I++N + I
Sbjct: 42 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 119
++ AGV K+ + + ++ QL K + + + D F+D KD Y L +
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 160
Query: 120 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
LL+ G + + DN + G PD H RGSS
Sbjct: 161 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 189
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
M G+++ +++ +E+G + GYS + A + ++ I++N + I
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 119
++ AG+ K+ + + ++ QL K + + + D F+D KD Y L +
Sbjct: 99 QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 120 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
LL+ G + + DN + G PD H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 70
+M LL L K +EIG GY +TA + EDG + +I+ E E ++K G
Sbjct: 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY 127
Query: 71 DHKINFI 77
D+ I +
Sbjct: 128 DNVIVIV 134
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 10 QLMAMLLRLVNAKK---TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 66
LMA+ + V K +EIG TGY+ + + + E G + +++ +R+ EI ++
Sbjct: 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Query: 67 KAGVDHKI 74
+ G+++ I
Sbjct: 122 RLGIENVI 129
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82
K +E G G ++ A P D +IT+ID++ E+ E +K G+ + + F+++
Sbjct: 40 KVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIF 97
Query: 83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE---RLMKLLKVGG 125
S+ + + SFD+ FV ++ + E L K+LK GG
Sbjct: 98 SLPFE-------DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGG 136
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
G+L+ +L R+ + + G G + A I ++ ID +R+ E +
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDN 104
Query: 69 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 128
G+ ++ + L + + + D F D D N + ER + L + +
Sbjct: 105 GLIDRVELQVGDPLGI-------AAGQRDIDILFXDCDVFNGADVLERXNRCLAKNALLI 157
Query: 129 YDNTLWGGTVAVPEE 143
N L G+VA E
Sbjct: 158 AVNALRRGSVAESHE 172
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 154 RQAILDLNRSLADDPRVQLSHV 175
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 45 DGQITAIDVNRETYEIGLPII-----KKAGVDHKI 74
DGQ I+V++ +Y +G+P++ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 45 DGQITAIDVNRETYEIGLPII-----KKAGVDHKI 74
DGQ I+V++ +Y +G+P++ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 45 DGQITAIDVNRETYEIGLPII-----KKAGVDHKI 74
DGQ I+V++ +Y +G+P++ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 45 DGQITAIDVNRETYEIGLPII-----KKAGVDHKI 74
DGQ I+V++ +Y +G+P++ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 45 DGQITAIDVNRETYEIGLPII-----KKAGVDHKI 74
DGQ I+V++ +Y +G+P++ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 45 DGQITAIDVNRETYEIGLPII-----KKAGVDHKI 74
DGQ I+V++ +Y +G+P++ K+ GVD +
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVV 155
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 115 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ--VPDHFRGSSRQAILDLNRSLADDPRV 170
E+ ++ K+ ++D L GG+ +P+ Q + D+F G DLN+S+ D V
Sbjct: 342 EKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGR------DLNKSINPDEAV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,655,742
Number of Sequences: 62578
Number of extensions: 237626
Number of successful extensions: 660
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 34
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)