BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029781
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGSMR 138
LDSISGS R
Sbjct: 62 LDSISGSGR 70
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
VGD MT V+ T +++A + L+E + PV+D D KLVG+++
Sbjct: 101 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIIT 147
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 8/106 (7%)
Query: 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 130 LDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVE 175
LDS G + + FN+ ++ K VG + L VE
Sbjct: 62 LDS--------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE 99
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
VGD MT V+ T +++A + L+E + PV+D D KLVG+++
Sbjct: 87 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIIT 133
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 56/63 (88%)
Query: 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132
YTVGDF T +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDS
Sbjct: 4 YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 133 ISG 135
ISG
Sbjct: 64 ISG 66
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
VGD T V+ +T +++A L+E + PV+D D KL+G+++
Sbjct: 100 VGDLXTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILT 146
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 59 GVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKL 118
G+ + R G V + MTK ++ V + V+EAL+ ++E RI PV+D+ KL
Sbjct: 137 GIITKKDIAAREGKL-VKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 119 VGVVSDYDLLALDSISGSMR 138
VG+++ DL+A ++R
Sbjct: 194 VGLITMSDLVARKKYKNAVR 213
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
ED+ + TVD AL + + I G PV++D+ K+VG+++ D+ A
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAA 146
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
+N + + D MT +E L ++++A E L + RI P++ D KLVG+++ D++
Sbjct: 151 KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM 210
Query: 129 ALDSISGSMRKLGFNLYFGFNSGNA 153
++ + R L G G +
Sbjct: 211 SVIEHPNAARDEKGRLLVGAAVGTS 235
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKL 140
TV EA++ + E +I G PV+D++ +LVG++++ D+ ++S ++ L
Sbjct: 113 TVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKKIKDL 160
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
+GD + ++++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L
Sbjct: 10 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 74 TVGD-FMTKKEDLHAVKTTTTVDE---ALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
+VG+ M + +D V T T D+ ++ + + R+ F V+DD +LVGV++ D+L
Sbjct: 78 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
+GD + ++++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 245
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 56 AHNGVGITNSVPPRNGTYTVGD-FMTKKEDLHAVKTTTTVDE---ALERLVEKRITGFPV 111
A++ +G+ + + +VG+ M + +D V T T D+ ++ + + R+ F V
Sbjct: 239 AYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFV 298
Query: 112 IDDDWKLVGVVSDYDLL 128
+DD +LVGV++ D+L
Sbjct: 299 VDDVGRLVGVLTLSDIL 315
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
+GD + ++++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L
Sbjct: 182 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 238
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 56 AHNGVGITNSVPPRNGTYTVGD-FMTKKEDLHAVKTTTTVDE---ALERLVEKRITGFPV 111
A++ +G+ + + +VG+ M + +D V T T D+ ++ + + R+ F V
Sbjct: 232 AYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFV 291
Query: 112 IDDDWKLVGVVSDYDLL 128
+DD +LVGV++ D+L
Sbjct: 292 VDDVGRLVGVLTLSDIL 308
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
D++ K++L AV T V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 186 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 245
Query: 128 LALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEG 176
+ L + + L ++ + YF G + C T+E
Sbjct: 246 INL-AAEKTYNNLDVSVTKALQHRSHYFE-------GVLKCYLHETLEA 286
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129
D++ K++L AV T V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 185 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 237
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 75 VGDF-MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
+GD + +++ + + TT V + ++ L + R++ P+ID++ L+ V YD+L L
Sbjct: 10 IGDLNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+ MTK+EDL T+ EA E L + P++++D +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDL 227
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA--LDSIS 134
+E++ +K +DEA+E + K + G P+++D+ +L+ ++++ D++ LD I
Sbjct: 91 EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID 145
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
K D+ K + + E +V I PV+D++ ++ G++++ D+L
Sbjct: 230 KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 128 LAL 130
+ L
Sbjct: 74 INL 76
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
T++ + RLVE + G V+D++ + G+VS D+L
Sbjct: 111 TLETIINRLVEAEVHGLVVVDENDVVKGIVSLSDIL 146
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 128 LAL 130
+ L
Sbjct: 74 INL 76
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 77 DFMTKK-EDLH--------AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+FM+K E+L V+TTT V AL V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 128 LAL 130
+ L
Sbjct: 74 INL 76
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
V D MT+ H + T T+++A + I P++D + KL+G+VS DLLA S
Sbjct: 7 VEDMMTRHP--HTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS 64
Query: 135 GSMRKLGFNLYF 146
G +L F
Sbjct: 65 LQRSAQGDSLAF 76
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 30 PITVATPSHLSKRLRFFTVSREVKAFAHNG---------VGITNS----VPPRNGTYTVG 76
P+TV TPS +K + ++RE + +G VGI V P G TV
Sbjct: 118 PVTV-TPS--TKIIELLQMARE---YGFSGFPVVEQGELVGIVTGRDLRVKPNAGD-TVA 170
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
MT K+ L + T ++E +L E RI V+D+++ L G+V+ D+
Sbjct: 171 AIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 221
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 20/111 (18%)
Query: 30 PITVATPSHLSKRLRFFTVSREVKAFAHNG---------VGITNS----VPPRNGTYTVG 76
P+TV TPS +K + ++RE + +G VGI V P G TV
Sbjct: 98 PVTV-TPS--TKIIELLQMARE---YGFSGFPVVEQGELVGIVTGRDLRVKPNAGD-TVA 150
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
MT K+ L + T ++E +L E RI V+D+++ L G+V+ D+
Sbjct: 151 AIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 201
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 96 EALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
EA E+ ++ +I+ PVIDD+ K++G+V+ D+
Sbjct: 29 EAFEKXLKYKISSLPVIDDENKVIGIVTTTDI 60
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERL-----VEKRITGFPVIDDDWKLVGVVSDYDLL 128
T+GD TK D+ + ++ EA+++ E+ I PV+D + KLVG++SD D++
Sbjct: 74 TIGDVXTK--DVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYD 126
V D MT L T + EA + + EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV--SDYD 126
V D MT L T + EA + + EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 77 DFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+ MTK+EDL T+ EA E L + P+++++ +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDL 227
>pdb|1YAV|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
pdb|1YAV|B Chain B, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
Length = 159
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
TVG FM + + + V+ ++ AL L + T PV+D ++L G++ + ++SI
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN--MIMNSI 72
Query: 134 SGSMR 138
G R
Sbjct: 73 FGLER 77
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 96 EALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
EA + L++ I P++D+ KLVG+++ +D+
Sbjct: 24 EAAKILIKHNINHLPIVDEHGKLVGIITSWDI 55
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
T+ + MT+ ++ VD ++ + I+G PV+DD ++VG+V+ D+ L
Sbjct: 65 TIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRL 119
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 96 EALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
EA + L++ I P++D+ KLVG+++ +D+
Sbjct: 22 EAAKILIKHNINHLPIVDEHGKLVGIITSWDI 53
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
T+ + MT+ ++ VD ++ + I+G PV+DD ++VG+V+ D+ L
Sbjct: 63 TIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRL 117
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 94 VDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG 147
+D+A++ + + PVIDDD K+VG+V+ + A+ ++ ++ KL + ++G
Sbjct: 175 LDQAVKLXLRRGFRRLPVIDDDNKVVGIVTVVN--AIKQLAKAVDKLDPDYFYG 226
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLG-FNL 144
V+T T +E + + T PV+D++ +LVG+V+ D+L + + + KLG ++
Sbjct: 232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHKLGAVDV 291
Query: 145 YFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSF 186
S A WL + + +L + G +T++I+ F
Sbjct: 292 PDLVYSEAGPVALWLAR----VRWLVILILTGMVTSSILQGF 329
>pdb|3LQN|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Of
Unknown Function From Bacillus Anthracis Str. Ames
Ancestor
Length = 150
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134
V D M E + V+ ++ AL LV+ + PV+D +KL G++S + LD I
Sbjct: 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTA--MILDGIL 74
Query: 135 GSMR 138
G R
Sbjct: 75 GLER 78
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130
V + MT+ D+ TV E ++ + I PVI + L+G++ D+DLL +
Sbjct: 223 VAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 97 ALERLVEKRITGFPVIDDDWKLVGVVS 123
ALE + ++ FPV++ + KLVG++S
Sbjct: 23 ALELFKKYKVRSFPVVNKEGKLVGIIS 49
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
+ D MTK E L TT+ EA + L + +I P++D++ L G+++ D+
Sbjct: 177 ISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLL 128
+K+ TV EA+ + + R+ PV+D DD ++GVV L+
Sbjct: 398 LKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI 439
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V + MT K + V+ + + DE + + E R+ PV+ D KL+G++S DL+
Sbjct: 80 VEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVL-DGGKLIGLISIGDLV 130
>pdb|3KXR|A Chain A, Structure Of The Cystathionine Beta-Synthase Pair Domain
Of The Putative Mg2+ Transporter So5017 From Shewanella
Oneidensis Mr-1
Length = 205
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123
ED A+ TT+ +A E + R PVIDD +L+G V+
Sbjct: 124 EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVT 164
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+ T+D + +E +I PV+D + LVG++++ D L
Sbjct: 31 VREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFL 71
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKL 118
L AVK TV EA L R P++D DW++
Sbjct: 679 LGAVKLPNTVREAYLNLSWSRKEATPLVDTDWEV 712
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+ T+D + +E +I PV+D + LVG++++ D L
Sbjct: 31 VREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFL 71
>pdb|2EMQ|A Chain A, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
pdb|2EMQ|B Chain B, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
Length = 157
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133
TV F+ + + V+ +D AL L + + PV+D +KL G++S + +D+I
Sbjct: 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLIS--MTMMMDAI 69
Query: 134 SGSMR 138
G R
Sbjct: 70 LGLER 74
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V T ++EAL+ +++ I PV+D+ ++VG ++ ++L
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 87 AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNL 144
A +T D +E + R+T ++ DD K GV+++ DL D + +++ L
Sbjct: 76 ACQTYPESDLIIEIPFDSRLTQHQIVTDDEKASGVMNELDLAEEDELDPLFKEVSLEL 133
>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae.
pdb|3K2V|B Chain B, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae
Length = 149
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127
V D +++ V T+ +AL + K + + DDD ++G+ +D DL
Sbjct: 30 VNDIXHTGDEIPHVGLQATLRDALLEITRKNLGXTAICDDDXNIIGIFTDGDL 82
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 12 LARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNG 71
++R+N+ G + P Q P V T ++ + +TV R + A +T +P RNG
Sbjct: 228 VSRINSFGYLYGTPGFQAPEIVRTGPTVATDI--YTVGRTLAA-------LTLDLPTRNG 278
Query: 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVE 103
Y G ED +KT + L R ++
Sbjct: 279 RYVDG----LPEDDPVLKTYDSYGRLLRRAID 306
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 70 NGTYTVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDY 125
N +VG+ + K+ + +H + T +D + + R+ V+D++ KL G++S
Sbjct: 248 NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA 307
Query: 126 DLL 128
D+L
Sbjct: 308 DIL 310
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 70 NGTYTVGDFMTKK----EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDY 125
N +VG+ + K+ + +H + T +D + + R+ V+D++ KL G++S
Sbjct: 247 NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLA 306
Query: 126 DLL 128
D+L
Sbjct: 307 DIL 309
>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein
Corc, Northeast Structural Genomics Consortium (nesg)
Target Er40
Length = 292
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLV-GVVSDYDLL 128
+K T+DE L+ ++E + FPVI +D + G++ DLL
Sbjct: 82 LKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 123
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 88 VKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
V+T T +E + + T PV+D++ +LVG+V+ D+L
Sbjct: 212 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252
>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|B Chain B, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|C Chain C, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|D Chain D, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
Length = 127
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLV-GVVSDYDLL 128
V D + +K T+DE L+ ++E + FPVI +D + G++ DLL
Sbjct: 5 VRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 59
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 51 EVKA-FAHNGVGITNSVPPRN---GTYTVGD--FMTKKEDLHAVKTTT--------TVDE 96
E+KA F GV IT + P + G T D F + + +V TT T+++
Sbjct: 162 EIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVTGSSPITLEK 221
Query: 97 ALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
A L E + P++D + LV +V+ DLL
Sbjct: 222 ANSLLRETKKGKLPIVDSNGHLVSLVARSDLL 253
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 51 EVKA-FAHNGVGITNSVPPRN---GTYTVGD--FMTKKEDLHAVKTTT--------TVDE 96
E+KA F GV IT + P + G T D F + + +V TT T+++
Sbjct: 162 EIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVTGSSPITLEK 221
Query: 97 ALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128
A L E + P++D + LV +V+ DLL
Sbjct: 222 ANSLLRETKKGKLPIVDSNGHLVSLVARSDLL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,501,067
Number of Sequences: 62578
Number of extensions: 224527
Number of successful extensions: 470
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 92
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)