Query 029781
Match_columns 188
No_of_seqs 262 out of 2556
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.7 4.4E-17 9.6E-22 121.7 9.7 113 70-185 169-283 (294)
2 COG2524 Predicted transcriptio 99.7 2E-16 4.3E-21 118.3 7.3 102 6-132 188-291 (294)
3 PRK15094 magnesium/cobalt effl 99.6 1.7E-14 3.6E-19 113.3 11.5 117 69-185 63-181 (292)
4 TIGR03520 GldE gliding motilit 99.6 2.3E-14 5E-19 117.5 11.3 115 69-185 187-303 (408)
5 cd04603 CBS_pair_KefB_assoc Th 99.6 1.3E-14 2.9E-19 97.9 8.1 99 6-129 9-110 (111)
6 cd04603 CBS_pair_KefB_assoc Th 99.6 8.7E-14 1.9E-18 93.9 11.4 102 84-185 2-105 (111)
7 PRK10892 D-arabinose 5-phospha 99.6 3.9E-14 8.4E-19 113.2 11.3 115 71-185 200-317 (326)
8 cd04619 CBS_pair_6 The CBS dom 99.5 2.4E-14 5.1E-19 97.1 7.7 103 5-129 8-113 (114)
9 COG3620 Predicted transcriptio 99.5 3.8E-14 8.3E-19 98.8 7.9 111 71-186 63-177 (187)
10 COG3448 CBS-domain-containing 99.5 5.3E-15 1.1E-19 112.8 3.6 115 69-185 241-364 (382)
11 cd04596 CBS_pair_DRTGG_assoc T 99.5 1.3E-13 2.9E-18 92.4 8.5 96 5-129 9-107 (108)
12 cd04619 CBS_pair_6 The CBS dom 99.5 4.1E-13 8.8E-18 91.0 10.8 102 84-185 2-108 (114)
13 COG4109 Predicted transcriptio 99.5 2.2E-13 4.8E-18 106.2 10.4 99 7-134 207-308 (432)
14 cd04618 CBS_pair_5 The CBS dom 99.5 3.8E-13 8.2E-18 89.0 10.2 88 84-185 2-92 (98)
15 COG3448 CBS-domain-containing 99.5 1.3E-13 2.8E-18 105.2 8.6 109 7-133 262-373 (382)
16 PRK11543 gutQ D-arabinose 5-ph 99.5 2.3E-13 4.9E-18 108.6 10.4 112 72-185 196-312 (321)
17 cd04641 CBS_pair_28 The CBS do 99.5 6E-13 1.3E-17 90.9 11.0 102 84-185 2-114 (120)
18 cd04600 CBS_pair_HPP_assoc Thi 99.5 2.5E-13 5.4E-18 93.1 8.4 112 5-129 9-123 (124)
19 cd04801 CBS_pair_M50_like This 99.5 7E-13 1.5E-17 89.6 10.5 102 84-185 2-108 (114)
20 PRK07807 inosine 5-monophospha 99.5 4.5E-13 9.8E-18 111.4 11.2 137 6-172 105-244 (479)
21 cd04617 CBS_pair_4 The CBS dom 99.5 1.6E-13 3.4E-18 93.6 7.0 103 6-129 9-117 (118)
22 COG3620 Predicted transcriptio 99.5 8.1E-14 1.7E-18 97.2 5.5 104 4-132 79-184 (187)
23 cd04607 CBS_pair_NTP_transfera 99.5 3.5E-13 7.5E-18 91.0 8.1 101 5-129 9-112 (113)
24 cd04639 CBS_pair_26 The CBS do 99.5 3.1E-13 6.7E-18 90.9 7.8 100 5-129 8-110 (111)
25 cd04639 CBS_pair_26 The CBS do 99.5 9.6E-13 2.1E-17 88.4 10.2 102 84-185 2-105 (111)
26 cd04618 CBS_pair_5 The CBS dom 99.5 3.1E-13 6.8E-18 89.5 7.6 85 5-129 8-97 (98)
27 cd04630 CBS_pair_17 The CBS do 99.5 1.5E-12 3.3E-17 88.1 11.1 102 84-185 2-108 (114)
28 cd04590 CBS_pair_CorC_HlyC_ass 99.5 1.6E-12 3.5E-17 87.3 11.1 102 84-185 2-105 (111)
29 cd04623 CBS_pair_10 The CBS do 99.5 1.9E-12 4.2E-17 87.0 11.6 102 84-185 2-107 (113)
30 cd04630 CBS_pair_17 The CBS do 99.5 3.7E-13 8E-18 91.1 7.9 102 5-129 8-113 (114)
31 cd04606 CBS_pair_Mg_transporte 99.5 4.6E-13 1E-17 89.9 8.3 96 6-130 5-108 (109)
32 cd04641 CBS_pair_28 The CBS do 99.4 4E-13 8.6E-18 91.8 7.9 108 5-129 8-119 (120)
33 cd04801 CBS_pair_M50_like This 99.4 2.4E-13 5.2E-18 91.9 6.6 102 5-129 8-113 (114)
34 PRK11573 hypothetical protein; 99.4 1.1E-12 2.4E-17 107.7 11.5 116 69-184 183-302 (413)
35 cd04593 CBS_pair_EriC_assoc_ba 99.4 4.7E-13 1E-17 90.7 7.8 103 5-130 8-115 (115)
36 cd04610 CBS_pair_ParBc_assoc T 99.4 8.6E-13 1.9E-17 88.0 9.0 96 5-129 9-106 (107)
37 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.5E-13 9.7E-18 89.6 7.6 97 5-129 9-108 (109)
38 cd04621 CBS_pair_8 The CBS dom 99.4 2E-12 4.4E-17 90.4 11.1 102 84-185 2-129 (135)
39 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1.4E-12 3E-17 108.4 11.7 99 6-133 104-204 (475)
40 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 7.7E-13 1.7E-17 88.2 8.3 94 6-129 9-105 (106)
41 cd04626 CBS_pair_13 The CBS do 99.4 2.7E-12 5.8E-17 86.3 10.9 102 84-185 2-105 (111)
42 cd04617 CBS_pair_4 The CBS dom 99.4 3.4E-12 7.4E-17 86.9 11.5 102 84-185 2-112 (118)
43 cd04620 CBS_pair_7 The CBS dom 99.4 5.8E-13 1.3E-17 90.1 7.5 101 6-129 9-114 (115)
44 cd04615 CBS_pair_2 The CBS dom 99.4 5.9E-13 1.3E-17 89.8 7.5 103 4-129 7-112 (113)
45 cd04593 CBS_pair_EriC_assoc_ba 99.4 3.5E-12 7.5E-17 86.4 11.2 102 84-185 2-109 (115)
46 cd04595 CBS_pair_DHH_polyA_Pol 99.4 3.3E-12 7.1E-17 85.7 11.0 101 84-185 3-104 (110)
47 cd04635 CBS_pair_22 The CBS do 99.4 1E-12 2.2E-17 89.8 8.6 111 5-129 8-121 (122)
48 cd04601 CBS_pair_IMPDH This cd 99.4 1.4E-12 2.9E-17 87.4 9.0 96 6-129 10-109 (110)
49 cd04624 CBS_pair_11 The CBS do 99.4 8.1E-13 1.8E-17 88.9 7.9 100 6-129 9-111 (112)
50 cd04614 CBS_pair_1 The CBS dom 99.4 3.3E-12 7.1E-17 84.1 10.6 88 84-185 2-90 (96)
51 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.1E-12 2.5E-17 87.1 8.5 94 5-128 8-103 (105)
52 cd04623 CBS_pair_10 The CBS do 99.4 7.8E-13 1.7E-17 88.9 7.8 102 5-129 8-112 (113)
53 PRK07107 inosine 5-monophospha 99.4 2.2E-12 4.8E-17 107.8 12.0 102 5-131 112-219 (502)
54 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 8.2E-13 1.8E-17 89.0 7.6 102 5-129 8-113 (114)
55 cd04600 CBS_pair_HPP_assoc Thi 99.4 3.8E-12 8.3E-17 87.1 11.0 102 84-185 3-118 (124)
56 cd04803 CBS_pair_15 The CBS do 99.4 2E-12 4.3E-17 88.3 9.4 112 5-130 8-122 (122)
57 cd04642 CBS_pair_29 The CBS do 99.4 1.7E-12 3.6E-17 89.5 8.9 114 6-129 9-125 (126)
58 cd04621 CBS_pair_8 The CBS dom 99.4 1.4E-12 3E-17 91.3 8.6 120 6-129 9-134 (135)
59 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4.7E-12 1E-16 84.9 10.7 101 84-185 2-104 (110)
60 cd04629 CBS_pair_16 The CBS do 99.4 2.6E-12 5.6E-17 86.6 9.4 102 84-185 2-108 (114)
61 TIGR00393 kpsF KpsF/GutQ famil 99.4 1.7E-12 3.6E-17 101.0 9.6 111 72-184 154-268 (268)
62 cd04595 CBS_pair_DHH_polyA_Pol 99.4 1.2E-12 2.5E-17 87.9 7.6 99 5-129 9-109 (110)
63 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1.3E-12 2.9E-17 88.0 8.0 102 5-129 9-113 (114)
64 cd04631 CBS_pair_18 The CBS do 99.4 1.2E-12 2.7E-17 89.7 7.9 114 5-130 8-125 (125)
65 cd04643 CBS_pair_30 The CBS do 99.4 9.2E-13 2E-17 89.1 7.1 103 5-130 8-116 (116)
66 PRK11543 gutQ D-arabinose 5-ph 99.4 9.1E-13 2E-17 105.1 8.1 102 5-130 214-318 (321)
67 cd04589 CBS_pair_CAP-ED_DUF294 99.4 6.9E-12 1.5E-16 84.3 11.3 101 84-185 2-105 (111)
68 cd04614 CBS_pair_1 The CBS dom 99.4 1.8E-12 3.9E-17 85.4 8.2 84 6-129 9-95 (96)
69 cd04585 CBS_pair_ACT_assoc2 Th 99.4 1.6E-12 3.4E-17 88.6 8.1 112 5-129 8-121 (122)
70 cd04624 CBS_pair_11 The CBS do 99.4 6.9E-12 1.5E-16 84.3 11.2 102 84-185 2-106 (112)
71 cd04629 CBS_pair_16 The CBS do 99.4 1.3E-12 2.7E-17 88.2 7.5 103 5-129 8-113 (114)
72 cd04626 CBS_pair_13 The CBS do 99.4 1.3E-12 2.8E-17 87.9 7.5 100 5-129 8-110 (111)
73 cd04586 CBS_pair_BON_assoc Thi 99.4 3.3E-12 7E-17 89.1 9.7 102 84-185 3-129 (135)
74 cd04803 CBS_pair_15 The CBS do 99.4 4.8E-12 1E-16 86.4 10.4 102 84-185 2-116 (122)
75 cd04588 CBS_pair_CAP-ED_DUF294 99.4 1.3E-12 2.9E-17 87.6 7.5 100 5-129 8-109 (110)
76 cd04586 CBS_pair_BON_assoc Thi 99.4 1.1E-12 2.3E-17 91.5 7.3 122 5-129 9-134 (135)
77 cd04605 CBS_pair_MET2_assoc Th 99.4 1.5E-12 3.1E-17 87.4 7.6 98 5-129 9-109 (110)
78 cd04642 CBS_pair_29 The CBS do 99.4 5.3E-12 1.1E-16 87.0 10.6 102 84-185 2-120 (126)
79 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 2E-12 4.2E-17 86.8 8.2 101 5-129 8-110 (111)
80 cd04602 CBS_pair_IMPDH_2 This 99.4 2E-12 4.3E-17 87.5 8.3 97 5-129 9-113 (114)
81 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 2E-12 4.3E-17 86.7 8.2 101 5-129 8-110 (111)
82 cd04608 CBS_pair_PALP_assoc Th 99.4 2E-13 4.4E-18 94.1 3.3 103 5-130 9-123 (124)
83 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 6.7E-12 1.5E-16 84.4 10.7 102 84-185 2-108 (114)
84 PLN02274 inosine-5'-monophosph 99.4 4.6E-12 9.9E-17 106.1 11.9 102 6-133 116-223 (505)
85 PRK01862 putative voltage-gate 99.4 2.3E-12 5E-17 110.2 10.4 115 69-185 443-563 (574)
86 cd04622 CBS_pair_9 The CBS dom 99.4 2.1E-12 4.5E-17 87.0 8.2 103 5-129 8-112 (113)
87 cd04587 CBS_pair_CAP-ED_DUF294 99.4 1.7E-12 3.6E-17 87.4 7.7 102 6-129 9-112 (113)
88 cd04800 CBS_pair_CAP-ED_DUF294 99.4 1.9E-12 4.1E-17 87.0 7.9 101 5-129 8-110 (111)
89 cd04636 CBS_pair_23 The CBS do 99.4 2.1E-12 4.6E-17 89.7 8.4 121 5-129 8-131 (132)
90 PRK05567 inosine 5'-monophosph 99.4 3.5E-12 7.6E-17 106.9 11.1 143 6-183 103-257 (486)
91 COG1253 TlyC Hemolysins and re 99.4 5.5E-12 1.2E-16 104.3 12.1 116 69-184 202-319 (429)
92 cd04607 CBS_pair_NTP_transfera 99.4 7.7E-12 1.7E-16 84.4 10.8 102 84-185 3-107 (113)
93 cd04636 CBS_pair_23 The CBS do 99.4 7E-12 1.5E-16 87.1 10.8 102 84-185 2-126 (132)
94 cd04631 CBS_pair_18 The CBS do 99.4 5.5E-12 1.2E-16 86.5 10.1 102 84-185 2-119 (125)
95 PRK10892 D-arabinose 5-phospha 99.4 1.4E-12 3.1E-17 104.2 8.2 102 5-130 219-323 (326)
96 cd04627 CBS_pair_14 The CBS do 99.4 5.7E-12 1.2E-16 86.4 10.1 102 84-185 2-117 (123)
97 cd04594 CBS_pair_EriC_assoc_ar 99.4 2.2E-12 4.7E-17 86.0 7.6 94 5-129 8-103 (104)
98 cd04640 CBS_pair_27 The CBS do 99.4 1E-12 2.2E-17 90.6 6.2 107 6-129 9-125 (126)
99 cd04627 CBS_pair_14 The CBS do 99.4 2.1E-12 4.6E-17 88.6 7.6 109 6-128 9-121 (123)
100 PRK07807 inosine 5-monophospha 99.4 5.3E-12 1.2E-16 105.0 11.1 109 71-185 87-197 (479)
101 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.3E-11 2.8E-16 82.2 10.9 97 84-185 2-100 (106)
102 cd04605 CBS_pair_MET2_assoc Th 99.4 1.4E-11 3E-16 82.6 11.0 100 84-185 3-104 (110)
103 cd04608 CBS_pair_PALP_assoc Th 99.4 5.3E-12 1.2E-16 87.0 9.1 102 84-185 3-117 (124)
104 cd04643 CBS_pair_30 The CBS do 99.4 1.4E-11 3.1E-16 83.2 11.0 100 84-185 2-110 (116)
105 cd04640 CBS_pair_27 The CBS do 99.4 1.5E-11 3.2E-16 84.8 10.8 102 84-185 2-120 (126)
106 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 1.9E-11 4.2E-16 81.9 10.9 101 84-185 2-105 (111)
107 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.4E-11 3E-16 82.5 10.1 98 84-185 3-102 (108)
108 cd04589 CBS_pair_CAP-ED_DUF294 99.3 4.2E-12 9.2E-17 85.3 7.5 101 5-129 8-110 (111)
109 cd04632 CBS_pair_19 The CBS do 99.3 1.6E-11 3.5E-16 84.6 10.6 102 84-185 2-122 (128)
110 cd04625 CBS_pair_12 The CBS do 99.3 3.5E-12 7.6E-17 85.8 6.7 102 5-129 8-111 (112)
111 cd04800 CBS_pair_CAP-ED_DUF294 99.3 2.5E-11 5.4E-16 81.4 10.9 101 84-185 2-105 (111)
112 PTZ00314 inosine-5'-monophosph 99.3 1.2E-11 2.6E-16 103.5 11.3 101 6-132 112-218 (495)
113 cd04590 CBS_pair_CorC_HlyC_ass 99.3 3.8E-12 8.3E-17 85.5 6.9 99 5-129 8-110 (111)
114 cd04633 CBS_pair_20 The CBS do 99.3 4.8E-12 1E-16 86.3 7.4 110 5-129 8-120 (121)
115 cd04615 CBS_pair_2 The CBS dom 99.3 2.3E-11 5.1E-16 81.9 10.7 102 84-185 2-107 (113)
116 COG2905 Predicted signal-trans 99.3 5E-12 1.1E-16 104.1 8.6 113 71-185 147-262 (610)
117 cd04599 CBS_pair_GGDEF_assoc2 99.3 2.7E-11 5.9E-16 80.4 10.8 97 84-185 2-99 (105)
118 PF00571 CBS: CBS domain CBS d 99.3 4.8E-12 1E-16 75.2 6.3 55 75-131 1-55 (57)
119 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.3E-11 4.9E-16 81.5 10.3 101 84-185 2-105 (111)
120 cd04625 CBS_pair_12 The CBS do 99.3 2.8E-11 6E-16 81.4 10.8 101 84-185 2-106 (112)
121 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 3.7E-11 7.9E-16 80.2 11.3 99 84-185 3-103 (109)
122 TIGR01302 IMP_dehydrog inosine 99.3 1.5E-11 3.2E-16 102.2 11.1 99 6-132 96-201 (450)
123 cd04802 CBS_pair_3 The CBS dom 99.3 3.9E-11 8.5E-16 80.6 11.1 101 84-185 2-106 (112)
124 cd04637 CBS_pair_24 The CBS do 99.3 4.3E-12 9.3E-17 86.7 6.4 113 5-130 8-122 (122)
125 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.8E-11 6.1E-16 82.4 10.5 102 84-185 2-115 (121)
126 cd04594 CBS_pair_EriC_assoc_ar 99.3 3.9E-11 8.4E-16 79.9 10.8 94 86-185 4-98 (104)
127 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.3E-11 5E-16 81.9 9.8 102 84-185 3-108 (114)
128 cd04633 CBS_pair_20 The CBS do 99.3 2.6E-11 5.7E-16 82.6 9.9 101 84-185 2-115 (121)
129 TIGR00400 mgtE Mg2+ transporte 99.3 3.4E-12 7.4E-17 106.1 6.4 134 6-172 147-289 (449)
130 cd04632 CBS_pair_19 The CBS do 99.3 6.3E-12 1.4E-16 86.7 6.7 116 4-129 7-127 (128)
131 TIGR00400 mgtE Mg2+ transporte 99.3 2.3E-11 5.1E-16 101.1 11.1 111 69-185 127-244 (449)
132 cd04609 CBS_pair_PALP_assoc2 T 99.3 9.6E-12 2.1E-16 83.2 7.2 101 5-130 8-110 (110)
133 cd04635 CBS_pair_22 The CBS do 99.3 3.7E-11 8.1E-16 82.0 10.1 102 84-185 2-116 (122)
134 cd04591 CBS_pair_EriC_assoc_eu 99.3 4.9E-11 1.1E-15 79.7 10.3 93 84-185 3-99 (105)
135 cd04585 CBS_pair_ACT_assoc2 Th 99.3 4.2E-11 9.2E-16 81.4 10.2 101 84-185 2-116 (122)
136 cd04587 CBS_pair_CAP-ED_DUF294 99.3 4E-11 8.8E-16 80.6 9.9 101 84-185 2-107 (113)
137 cd04802 CBS_pair_3 The CBS dom 99.3 1.3E-11 2.8E-16 83.0 7.3 102 5-129 8-111 (112)
138 cd04584 CBS_pair_ACT_assoc Thi 99.3 1.6E-11 3.5E-16 83.6 7.8 110 5-129 8-120 (121)
139 PRK07107 inosine 5-monophospha 99.3 2.8E-11 6.1E-16 101.3 10.2 110 74-185 95-212 (502)
140 COG0517 FOG: CBS domain [Gener 99.3 1.2E-10 2.5E-15 78.8 11.4 105 78-185 4-113 (117)
141 cd04634 CBS_pair_21 The CBS do 99.3 6.6E-11 1.4E-15 83.5 10.5 101 84-185 2-137 (143)
142 PRK01862 putative voltage-gate 99.3 1.3E-11 2.8E-16 105.6 8.0 103 7-132 464-571 (574)
143 TIGR01137 cysta_beta cystathio 99.3 5E-11 1.1E-15 99.4 11.2 112 70-185 332-446 (454)
144 cd04620 CBS_pair_7 The CBS dom 99.3 8E-11 1.7E-15 79.5 10.2 101 84-185 2-109 (115)
145 cd04638 CBS_pair_25 The CBS do 99.3 2.7E-11 5.8E-16 80.8 7.8 94 6-129 9-105 (106)
146 COG2905 Predicted signal-trans 99.3 1.1E-11 2.4E-16 102.0 7.0 104 5-132 164-270 (610)
147 cd02205 CBS_pair The CBS domai 99.3 2.6E-11 5.6E-16 80.7 7.6 102 5-129 8-112 (113)
148 COG4109 Predicted transcriptio 99.3 2.9E-11 6.2E-16 94.6 8.7 114 69-186 184-299 (432)
149 cd04637 CBS_pair_24 The CBS do 99.3 6.6E-11 1.4E-15 80.8 9.4 101 84-185 2-116 (122)
150 cd04601 CBS_pair_IMPDH This cd 99.2 8.7E-11 1.9E-15 78.5 9.6 99 84-185 3-104 (110)
151 cd04592 CBS_pair_EriC_assoc_eu 99.2 6.9E-11 1.5E-15 82.6 9.3 94 84-177 2-118 (133)
152 COG0517 FOG: CBS domain [Gener 99.2 3.7E-11 8.1E-16 81.2 7.7 100 5-128 14-117 (117)
153 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.5E-10 3.1E-15 77.4 10.4 99 84-185 2-104 (110)
154 cd04634 CBS_pair_21 The CBS do 99.2 3.9E-11 8.5E-16 84.6 7.9 121 5-129 8-142 (143)
155 COG4535 CorC Putative Mg2+ and 99.2 1.1E-11 2.5E-16 91.9 5.0 115 71-185 65-181 (293)
156 TIGR01302 IMP_dehydrog inosine 99.2 1E-10 2.2E-15 97.2 11.0 108 73-185 80-193 (450)
157 cd04622 CBS_pair_9 The CBS dom 99.2 2.1E-10 4.6E-15 77.1 10.8 101 84-185 2-107 (113)
158 cd04602 CBS_pair_IMPDH_2 This 99.2 1.3E-10 2.8E-15 78.5 9.6 99 84-185 3-108 (114)
159 cd02205 CBS_pair The CBS domai 99.2 2.7E-10 5.9E-15 75.7 11.0 102 84-185 2-107 (113)
160 TIGR00393 kpsF KpsF/GutQ famil 99.2 4.1E-11 8.8E-16 93.2 7.8 94 6-123 172-268 (268)
161 cd04591 CBS_pair_EriC_assoc_eu 99.2 4.3E-11 9.3E-16 80.0 6.6 91 5-130 9-105 (105)
162 cd04638 CBS_pair_25 The CBS do 99.2 4.1E-10 8.8E-15 75.0 11.4 98 84-185 2-100 (106)
163 cd04606 CBS_pair_Mg_transporte 99.2 1.8E-10 3.8E-15 77.2 9.2 94 88-185 2-102 (109)
164 PRK15094 magnesium/cobalt effl 99.2 4.1E-11 8.8E-16 94.2 6.9 101 6-132 85-189 (292)
165 cd04610 CBS_pair_ParBc_assoc T 99.2 3.4E-10 7.5E-15 75.3 10.6 97 84-185 3-101 (107)
166 PLN02274 inosine-5'-monophosph 99.2 1.8E-10 3.9E-15 96.6 10.9 103 78-185 105-214 (505)
167 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 2E-10 4.3E-15 95.6 10.9 107 72-185 87-195 (475)
168 PRK05567 inosine 5'-monophosph 99.2 1.9E-10 4E-15 96.6 10.7 108 73-185 87-197 (486)
169 PTZ00314 inosine-5'-monophosph 99.2 3E-10 6.4E-15 95.2 11.0 107 74-185 97-210 (495)
170 cd04598 CBS_pair_GGDEF_assoc T 99.2 4.6E-10 1E-14 76.2 9.9 101 84-185 2-113 (119)
171 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.1E-10 2.4E-15 79.2 6.3 105 5-129 8-118 (119)
172 TIGR03520 GldE gliding motilit 99.1 1.3E-10 2.9E-15 95.4 7.4 131 6-164 209-349 (408)
173 PRK14869 putative manganese-de 99.1 1E-10 2.2E-15 99.7 4.8 112 72-185 245-385 (546)
174 COG4536 CorB Putative Mg2+ and 99.1 4.7E-10 1E-14 88.6 7.6 116 69-184 196-315 (423)
175 KOG1764 5'-AMP-activated prote 99.0 1.7E-09 3.6E-14 87.9 10.0 167 4-185 168-351 (381)
176 COG2239 MgtE Mg/Co/Ni transpor 99.0 2.5E-09 5.4E-14 88.1 8.9 110 69-184 128-244 (451)
177 TIGR01137 cysta_beta cystathio 99.0 1.2E-09 2.7E-14 91.0 6.8 100 6-131 351-453 (454)
178 PRK14869 putative manganese-de 99.0 4.5E-09 9.7E-14 89.7 10.2 57 72-130 67-123 (546)
179 KOG1764 5'-AMP-activated prote 98.9 5.9E-09 1.3E-13 84.7 8.6 107 7-133 246-360 (381)
180 COG2239 MgtE Mg/Co/Ni transpor 98.9 3.4E-09 7.3E-14 87.4 6.5 97 7-132 149-253 (451)
181 cd04592 CBS_pair_EriC_assoc_eu 98.8 4.8E-09 1E-13 73.3 5.1 99 5-115 8-118 (133)
182 PRK11573 hypothetical protein; 98.8 1.7E-08 3.7E-13 83.1 7.0 102 6-131 205-310 (413)
183 cd04597 CBS_pair_DRTGG_assoc2 98.7 4.8E-08 1E-12 66.1 6.1 55 73-129 58-112 (113)
184 KOG2550 IMP dehydrogenase/GMP 98.7 1.3E-07 2.8E-12 75.7 9.2 97 7-131 125-227 (503)
185 PRK10070 glycine betaine trans 98.7 7.5E-08 1.6E-12 78.9 7.6 98 8-134 295-395 (400)
186 TIGR01186 proV glycine betaine 98.6 1.1E-07 2.4E-12 77.1 7.5 96 8-132 260-358 (363)
187 COG1253 TlyC Hemolysins and re 98.6 9.5E-08 2.1E-12 79.2 7.3 133 6-164 224-367 (429)
188 smart00116 CBS Domain in cysta 98.4 1.2E-06 2.6E-11 48.9 5.9 47 85-131 2-48 (49)
189 TIGR01186 proV glycine betaine 98.4 4.7E-06 1E-10 67.6 10.6 98 84-185 251-350 (363)
190 PRK10070 glycine betaine trans 98.2 9E-06 2E-10 66.8 9.7 107 73-185 274-385 (400)
191 COG4535 CorC Putative Mg2+ and 98.2 3.6E-06 7.8E-11 63.1 5.9 102 4-131 83-188 (293)
192 COG4536 CorB Putative Mg2+ and 98.1 5.8E-06 1.2E-10 65.9 5.2 101 7-131 219-323 (423)
193 KOG0474 Cl- channel CLC-7 and 98.1 3.5E-06 7.6E-11 71.0 3.7 125 5-131 597-746 (762)
194 KOG2550 IMP dehydrogenase/GMP 98.0 1.3E-05 2.9E-10 64.4 5.5 99 84-185 117-220 (503)
195 KOG0475 Cl- channel CLC-3 and 98.0 6E-05 1.3E-09 63.7 9.0 118 7-131 566-694 (696)
196 KOG0474 Cl- channel CLC-7 and 97.6 0.00012 2.6E-09 62.0 5.5 116 68-185 577-739 (762)
197 PF00571 CBS: CBS domain CBS d 97.4 0.00017 3.8E-09 42.1 2.9 45 141-185 2-48 (57)
198 COG1125 OpuBA ABC-type proline 97.3 0.00071 1.5E-08 52.0 6.2 99 23-129 205-307 (309)
199 KOG0475 Cl- channel CLC-3 and 97.1 0.005 1.1E-07 52.5 9.7 101 85-185 558-687 (696)
200 COG4175 ProV ABC-type proline/ 97.0 0.00074 1.6E-08 53.4 3.7 139 23-185 234-375 (386)
201 TIGR03415 ABC_choXWV_ATP choli 96.3 0.016 3.5E-07 47.6 6.7 102 70-185 271-372 (382)
202 COG4175 ProV ABC-type proline/ 96.1 0.018 3.9E-07 45.8 6.0 52 78-132 332-383 (386)
203 TIGR03415 ABC_choXWV_ATP choli 95.9 0.019 4.2E-07 47.1 5.6 54 74-132 327-380 (382)
204 cd04597 CBS_pair_DRTGG_assoc2 95.3 0.032 7E-07 37.3 4.2 47 139-185 59-107 (113)
205 KOG0476 Cl- channel CLC-2 and 93.1 0.11 2.4E-06 45.6 3.8 60 71-132 586-647 (931)
206 smart00116 CBS Domain in cysta 93.0 0.17 3.8E-06 27.0 3.4 36 150-185 5-41 (49)
207 KOG2118 Predicted membrane pro 88.9 0.8 1.7E-05 39.1 4.9 114 71-184 202-320 (498)
208 KOG0476 Cl- channel CLC-2 and 81.2 2.5 5.3E-05 37.7 4.2 49 84-133 811-859 (931)
209 PF05198 IF3_N: Translation in 79.0 3.9 8.5E-05 25.4 3.6 31 106-136 12-42 (76)
210 KOG2118 Predicted membrane pro 66.5 12 0.00026 32.1 4.8 93 11-127 228-324 (498)
211 COG2216 KdpB High-affinity K+ 63.7 13 0.00027 32.1 4.2 37 92-129 413-449 (681)
212 PF14827 Cache_3: Sensory doma 55.9 14 0.00031 24.6 2.9 19 107-125 92-110 (116)
213 COG0290 InfC Translation initi 54.9 20 0.00043 26.1 3.5 30 106-135 18-47 (176)
214 PF14044 NETI: NETI protein 51.6 23 0.00049 20.7 2.7 25 87-113 3-27 (57)
215 PRK00028 infC translation init 47.7 18 0.00039 26.5 2.4 37 92-128 35-72 (177)
216 TIGR00168 infC translation ini 46.1 17 0.00037 26.3 2.1 37 92-128 23-60 (165)
217 CHL00199 infC translation init 45.8 20 0.00044 26.3 2.4 37 92-128 40-77 (182)
218 PRK11388 DNA-binding transcrip 44.2 42 0.0009 29.7 4.6 37 84-123 126-162 (638)
219 PF02743 Cache_1: Cache domain 40.5 35 0.00077 20.8 2.7 17 108-124 18-34 (81)
220 smart00594 UAS UAS domain. 37.9 23 0.0005 23.8 1.6 57 71-129 51-119 (122)
221 PF13365 Trypsin_2: Trypsin-li 36.3 26 0.00055 22.7 1.7 20 102-121 101-120 (120)
222 PF13596 PAS_10: PAS domain; P 30.0 45 0.00098 21.4 2.0 16 107-122 84-99 (106)
223 PHA00673 acetyltransferase dom 28.3 1.4E+02 0.003 21.3 4.4 83 92-174 40-125 (154)
224 cd02958 UAS UAS family; UAS is 27.8 81 0.0018 20.6 3.0 59 71-131 41-107 (114)
225 smart00481 POLIIIAc DNA polyme 25.4 96 0.0021 18.1 2.8 38 89-127 12-49 (67)
226 PF10049 DUF2283: Protein of u 23.6 67 0.0015 17.9 1.7 10 112-121 35-44 (50)
227 PF13673 Acetyltransf_10: Acet 22.9 1.7E+02 0.0037 18.6 3.9 32 93-125 31-62 (117)
228 PF00944 Peptidase_S3: Alphavi 22.4 1.1E+02 0.0023 21.5 2.7 20 104-123 105-124 (158)
229 PF08275 Toprim_N: DNA primase 22.1 82 0.0018 21.5 2.2 17 108-124 80-96 (128)
230 PF03948 Ribosomal_L9_C: Ribos 22.1 45 0.00097 21.2 0.8 22 113-134 23-44 (87)
231 COG1623 Predicted nucleic-acid 21.9 71 0.0015 25.5 2.0 38 85-122 15-52 (349)
232 PF13098 Thioredoxin_2: Thiore 21.9 64 0.0014 20.8 1.6 27 103-129 80-110 (112)
233 PRK10638 glutaredoxin 3; Provi 21.4 2.1E+02 0.0045 17.4 3.9 31 100-132 44-74 (83)
234 KOG3235 Subunit of the major N 20.3 1.3E+02 0.0028 21.8 2.9 51 74-124 8-59 (193)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.72 E-value=4.4e-17 Score=121.70 Aligned_cols=113 Identities=24% Similarity=0.242 Sum_probs=106.7
Q ss_pred CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN 149 (188)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (188)
.+..++.++|++ +++++.+++++.++..+|.+++++..||+|+ ++++|++|..|+..+.++......++++|.+.++
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~vi 245 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVI 245 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccCCc
Confidence 456789999999 9999999999999999999999999999995 5999999999999999988888889999999888
Q ss_pred -cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 150 -SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 150 -~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
++.++.+.+++++|..++++.++|++ ++.+.|+||+
T Consensus 246 tI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITr 283 (294)
T COG2524 246 TINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITR 283 (294)
T ss_pred eEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEeh
Confidence 99999999999999999999999998 8999999986
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=2e-16 Score=118.26 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=91.6
Q ss_pred cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE 83 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 83 (188)
-.|+.+|+++|.++++++.||+|+++++ +|..|+.... .....+.+|+++|.+
T Consensus 188 d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~ai-----------------------a~g~~~~kV~~~M~k-- 242 (294)
T COG2524 188 DDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAI-----------------------ANGNLDAKVSDYMRK-- 242 (294)
T ss_pred CccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHH-----------------------HcCCccccHHHHhcc--
Confidence 4689999999999999999999988999 9999987422 123457899999999
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
+++++.+++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..++
T Consensus 243 ~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 243 NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999999999999999999999997654
No 3
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.59 E-value=1.7e-14 Score=113.35 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=101.0
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccC
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG 147 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~ 147 (188)
.....+++++|+++.++.+++.+.++.++++.+.+++++++||++++ ++++|+++.+|++...........+.++|.+.
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~~ 142 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQA 142 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCCC
Confidence 45678999999987678999999999999999999999999999865 78999999999996553322233467888888
Q ss_pred cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+.++++.++.++++.|.+++.+.++|+++ +.+.|+||.
T Consensus 143 ~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTl 181 (292)
T PRK15094 143 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTI 181 (292)
T ss_pred cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEH
Confidence 78999999999999999999999999986 789999984
No 4
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.57 E-value=2.3e-14 Score=117.46 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=100.8
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccC
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFG 147 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~ 147 (188)
...+.+++|+|+|+.++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++..... ....+.+++.++
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~l~~~~~~~ 264 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--KNFDWQSLLREP 264 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--CCCCHHHHcCCC
Confidence 45678999999998789999999999999999999999999999864 689999999999975432 223357788887
Q ss_pred cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
..++++.++.++++.|.+++.+.++|+|+ |.+.|+||-
T Consensus 265 ~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~ 303 (408)
T TIGR03520 265 YFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTL 303 (408)
T ss_pred eEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEH
Confidence 77999999999999999999999999997 899999983
No 5
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=1.3e-14 Score=97.94 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=84.1
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|.+.|.+++.+.+||+| +|+++ ++..|+.+.. .......++.++|..
T Consensus 9 ~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~-----------------------~~~~~~~~v~~~~~~- 64 (111)
T cd04603 9 ENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIG-----------------------PNDYETLKVCEVYIV- 64 (111)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhc-----------------------cccccccChhheeec-
Confidence 35788999999999999999999 78888 9999987310 011123468899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 65 -~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 65 -PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred -CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 8889999999999999999999999999998899999999999975
No 6
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=8.7e-14 Score=93.91 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=86.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+.........++.++|..... +.+++++.+++++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~ 81 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRI 81 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHH
Confidence 467899999999999999999999999999889999999999998754322223446777866556 8999999999999
Q ss_pred HhccCceEEEEEeC-CEeeceeec
Q 029781 163 VGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
|.+++...+||+++ +.+.|++|.
T Consensus 82 m~~~~~~~lpVvd~~~~~~Giit~ 105 (111)
T cd04603 82 FRETEPPVVAVVDKEGKLVGTIYE 105 (111)
T ss_pred HHHcCCCeEEEEcCCCeEEEEEEh
Confidence 99999999999975 899999986
No 7
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.56 E-value=3.9e-14 Score=113.20 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=98.9
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--CcccccccccccCc
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--GSMRKLGFNLYFGF 148 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--~~~~~~~~~~~~~~ 148 (188)
...+++++|.+.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+.+..... +...++.++|.+.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~ 279 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGG 279 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence 5678999998533688999999999999999999888888889889999999999998765432 22346788898766
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
. +.+++++.++++.|.+++.+.+||++++.+.|++|.
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~ 317 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHM 317 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEh
Confidence 6 999999999999999999999999999999999985
No 8
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=2.4e-14 Score=97.10 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=86.7
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.+|++.|.+++...+||+| +|+++ ++.+|+.+... .........++.++|..
T Consensus 8 ~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~--------------------~~~~~~~~~~v~~~~~~ 67 (114)
T cd04619 8 VNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG--------------------RCGGPGCTAPVENVMTR 67 (114)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh--------------------hcCCCcccCCHHHHhcC
Confidence 456899999999999999999999 88998 99999873110 00112335678999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus 68 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 68 --AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred --CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 8999999999999999999999999999998889999999999875
No 9
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.53 E-value=3.8e-14 Score=98.83 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=93.9
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC---cccccccccccC
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---SMRKLGFNLYFG 147 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~ 147 (188)
...+++.+|+. +++.+.+++++.++.++|.+++++++||+++ |+++|-||..++.++.-+.. ....+.++|..+
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~ 139 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEP 139 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCC
Confidence 45788999999 9999999999999999999999999999985 89999999999998764432 133478899988
Q ss_pred cc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeecc
Q 029781 148 FN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSF 186 (188)
Q Consensus 148 ~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~~ 186 (188)
++ ++++.++..+.+++..++ . +.|+++|.+.||||.+
T Consensus 140 fP~Vs~~~~l~vI~~LL~~~~-A-VlV~e~G~~vGIITk~ 177 (187)
T COG3620 140 FPTVSPDESLNVISQLLEEHP-A-VLVVENGKVVGIITKA 177 (187)
T ss_pred CCcCCCCCCHHHHHHHHhhCC-e-EEEEeCCceEEEEeHH
Confidence 88 999999998888777433 3 3566999999999964
No 10
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.53 E-value=5.3e-15 Score=112.76 Aligned_cols=115 Identities=27% Similarity=0.295 Sum_probs=99.9
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-------cccccc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-------SMRKLG 141 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-------~~~~~~ 141 (188)
.....+..++|++ +++++..++++.+|.+.|.+|+++.+||+|++.+++|++|.+|+.+...... ....+.
T Consensus 241 ~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk 318 (382)
T COG3448 241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK 318 (382)
T ss_pred HhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccc
Confidence 3457789999999 9999999999999999999999999999999999999999999997443211 223478
Q ss_pred cccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 142 FNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 142 ~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.+|.+++. +.++++..++.-++.+.+.+.+||+| ++.+.||||-
T Consensus 319 ~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQ 364 (382)
T COG3448 319 GIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQ 364 (382)
T ss_pred ccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeH
Confidence 88986665 99999999999999999999999998 5899999983
No 11
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=1.3e-13 Score=92.38 Aligned_cols=96 Identities=24% Similarity=0.334 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-+++.+|.+.|.+++...+||+| +|+++ ++.+++... ....++.++|..
T Consensus 9 ~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~---------------------------~~~~~v~~~~~~ 61 (108)
T cd04596 9 TTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK---------------------------DPDTTIEKVMTK 61 (108)
T ss_pred CCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc---------------------------cccccHHHHhcC
Confidence 446789999999999999999999 78888 999897621 123478899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++++++++.++++.|.+++...+||++++|+++|++|..|+++
T Consensus 62 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 62 --NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred --CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 8899999999999999999999999999998899999999999875
No 12
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=4.1e-13 Score=90.98 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=86.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc---cCcccccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI---SGSMRKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
.+.++.+++++.++++.|.+++...+||+|++|+++|+++..|+.+.... .....++.++|..... +.+++++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence 36788999999999999999999999999988999999999999875543 2233456777765555 8999999999
Q ss_pred HHHHhccCceEEEEEeC-CEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
++.|.+++...+||+++ +.+.|+++.
T Consensus 82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~ 108 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNA 108 (114)
T ss_pred HHHHHHcCCCeEEEECCCCcEEEEEEh
Confidence 99999999999999985 789999985
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.50 E-value=2.2e-13 Score=106.21 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=90.5
Q ss_pred ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781 7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE 83 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 83 (188)
+++.+..++..+.++++|||+| ..+++ +|.+|+. ...+..++..+|++
T Consensus 207 d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~---------------------------~~~~~t~ieKVMtk-- 257 (432)
T COG4109 207 DTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL---------------------------DKKPSTTIEKVMTK-- 257 (432)
T ss_pred ccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh---------------------------cCCCCccHHHHhcc--
Confidence 6788999999999999999999 77888 9999987 34557899999999
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~ 134 (188)
+|+++.+.+++..+.+.|...+++.+||+|++.+++|+||++|+++.++..
T Consensus 258 np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 258 NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887643
No 14
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=3.8e-13 Score=89.04 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=78.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (188)
.+.++++++++.++.+.|.+++.+.+||+|++ |+++|++|..|+.+... ...+.+++++.+++++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~--------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee--------------eEEeCCCCcHHHHHHH
Confidence 57899999999999999999999999999974 79999999999987542 3348899999999999
Q ss_pred HhccCceEEEEEeC--CEeeceeec
Q 029781 163 VGGINCGFLLTVEG--AMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~--~~~~giit~ 185 (188)
|.+++.+.+||+++ +.+.|++|.
T Consensus 68 m~~~~~~~lpVvd~~~~~~~giit~ 92 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTS 92 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEeeh
Confidence 99999999999984 689999986
No 15
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.49 E-value=1.3e-13 Score=105.23 Aligned_cols=109 Identities=28% Similarity=0.260 Sum_probs=91.9
Q ss_pred ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781 7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE 83 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 83 (188)
.|+.+|.++|.+++++.+||+| +.+++ +|.+|+.+...+ .+ ..+ .......+++.+|++
T Consensus 262 ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~--~p-~qr-------------lr~~~~~~vk~imt~-- 323 (382)
T COG3448 262 TSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP--SP-FQR-------------LRFLRPPTVKGIMTT-- 323 (382)
T ss_pred CChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc--ch-HHH-------------hhccCCCcccccccC--
Confidence 5788999999999999999999 77888 999999964433 00 101 012345689999999
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~ 133 (188)
++.++.++++..+++-.+.+.+.+.+||+|++|+++||||..|++.++..
T Consensus 324 ~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 324 PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999977643
No 16
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=2.3e-13 Score=108.57 Aligned_cols=112 Identities=17% Similarity=0.052 Sum_probs=97.8
Q ss_pred CcccccccccCCC--eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCc
Q 029781 72 TYTVGDFMTKKED--LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGF 148 (188)
Q Consensus 72 ~~~v~~im~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~ 148 (188)
..+|+++|.+ + +.++++++++.++.+.|.+++...+||+|++|+++|+|+..|+.+..... .....+.++|.+.+
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 5789999998 7 89999999999999999999999999999889999999999998755432 23345778888766
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
. +.+++++.++++.|.+++...+||++ ++.+.|+||.
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~ 312 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINL 312 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence 6 89999999999999999999999998 4789999985
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6e-13 Score=90.91 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=82.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc---cccc------cccc-CcccCCc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR---KLGF------NLYF-GFNSGNA 153 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~---~~~~------~~~~-~~~~~~~ 153 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|++.+....+... .+.+ .|.. ...+.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 6789999999999999999999999999998899999999999997654332211 1111 1222 2348899
Q ss_pred chHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 154 YFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 154 ~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+++.++++.|.+++.+.+||+++ +.+.|++|.
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~ 114 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISL 114 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEH
Confidence 99999999999999999999986 789999985
No 18
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=2.5e-13 Score=93.09 Aligned_cols=112 Identities=26% Similarity=0.275 Sum_probs=85.9
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++.+.|.+++++.+||++ +|+++ ++.+++.+.... ........ .. .......++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~---~~~~~~~~---~~-----~~~~~~~~i~~~~~~ 77 (124)
T cd04600 9 PDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARP---DGRRPLRG---RL-----RGRDKPETVGDIMSP 77 (124)
T ss_pred CCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcc---cccchhhh---hh-----hcccccccHHHhccC
Confidence 346889999999999999999999 68888 999998742110 00000000 00 001234578899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 8999999999999999999999999999998899999999999975
No 19
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7e-13 Score=89.64 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=84.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccC--c-ccCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG--F-NSGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~-~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~v 159 (188)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+++..|+++.....+...++.++|.+. . .+.+++++.++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV 81 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHH
Confidence 6788999999999999997665 889999998899999999999997664333334566777542 3 38889999999
Q ss_pred HHHHhccCceEEEEEeC-CEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
++.|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~~l~Vv~~~~~~~Gvl~~ 108 (114)
T cd04801 82 LKLLEEQGLDELAVVEDSGQVIGLITE 108 (114)
T ss_pred HHHHHHCCCCeeEEEcCCCcEEEEEec
Confidence 99999999999999986 899999985
No 20
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.47 E-value=4.5e-13 Score=111.36 Aligned_cols=137 Identities=19% Similarity=0.102 Sum_probs=100.9
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|+++|.+++++++||+| +++++ +|.+|+.. .....++.++|++
T Consensus 105 d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~---------------------------~~~~~~V~diMt~- 156 (479)
T PRK07807 105 DDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG---------------------------VDRFTQVRDVMST- 156 (479)
T ss_pred CCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc---------------------------CccCCCHHHhccC-
Confidence 45899999999999999999999 78888 99999761 0112468999998
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF 162 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..........-+..+-... +.......+..+.
T Consensus 157 -~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa-v~~~~~~~~~a~~ 234 (479)
T PRK07807 157 -DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA-VGINGDVAAKARA 234 (479)
T ss_pred -CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh-hccChhHHHHHHH
Confidence 99999999999999999999999999999988999999999999986653311100010110111 2222334455556
Q ss_pred HhccCceEEE
Q 029781 163 VGGINCGFLL 172 (188)
Q Consensus 163 l~~~~~~~~~ 172 (188)
|.+.+.+.+.
T Consensus 235 Lv~aGvd~i~ 244 (479)
T PRK07807 235 LLEAGVDVLV 244 (479)
T ss_pred HHHhCCCEEE
Confidence 6667777733
No 21
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.6e-13 Score=93.58 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=83.5
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|++.|.+++++.+||+| +++++ +|..|+.+... ........++.++|...
T Consensus 9 ~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~---------------------~~~~~~~~~~~~~~~~~ 67 (118)
T cd04617 9 NTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI---------------------GGADLQKVPVGVIMTRM 67 (118)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH---------------------cCCCccCCCHHHHhCCC
Confidence 35889999999999999999999 78888 99999874210 01122355678899731
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~ 129 (188)
.++.++++++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 68 ~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 68 PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 257899999999999999999999999999876 69999999999875
No 22
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=8.1e-14 Score=97.23 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=86.6
Q ss_pred cccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 4 ISIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 4 ~~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.+=+++.+++++|.++|++.+||+++++++ +|++++.+.. .. ........+++++|..
T Consensus 79 ~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~------------le--------~~e~i~~~~vr~vM~e 138 (187)
T COG3620 79 SPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRAL------------LE--------GMESIRSLRVREVMGE 138 (187)
T ss_pred CchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHH------------hc--------cccchhhhhHHHHhcC
Confidence 456899999999999999999999999999 9999988421 00 0134457899999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
.++++.++.++..+..++..++ .+.|+ ++|+++||||..|+++...
T Consensus 139 --~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 139 --PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred --CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 8999999999999998888765 46677 4799999999999998764
No 23
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=3.5e-13 Score=91.02 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.+|++.|.+.+...+||+| +|+++ ++.+|+.+... .......++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~----------------------~~~~~~~~v~~~~~~ 66 (113)
T cd04607 9 PDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL----------------------KGLSLDDPVSEVMNR 66 (113)
T ss_pred CCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh----------------------cCCCcCCCHHHhhcC
Confidence 345889999999999999999998 78888 99999763110 011223568899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 67 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 67 --NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred --CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 8889999999999999999999999999998899999999999874
No 24
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=3.1e-13 Score=90.85 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.++++.|.+.+...+||++ +|+++ ++..++.+... ......++.++|..
T Consensus 8 ~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~-----------------------~~~~~~~v~~~~~~ 64 (111)
T cd04639 8 PADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA-----------------------EGGPDAPVRGVMRR 64 (111)
T ss_pred CCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH-----------------------hcCCCCcHHHHhcC
Confidence 457889999999989999999999 68888 99999873210 11123468899987
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.++.++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus 65 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 65 --DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred --CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 8999999999999999999999999999997799999999999875
No 25
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=9.6e-13 Score=88.43 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=86.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+.........++.++|..... +.++.++.++++.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~ 81 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL 81 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHHH
Confidence 577899999999999999988899999999889999999999998765443333456777755555 8999999999999
Q ss_pred HhccCceEEEEEeC-CEeeceeec
Q 029781 163 VGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~Vv~~~~~~~G~it~ 105 (111)
T cd04639 82 MQQGGAPAVPVVDGSGRLVGLVTL 105 (111)
T ss_pred HHhcCCceeeEEcCCCCEEEEEEH
Confidence 99999999999986 899999985
No 26
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=3.1e-13 Score=89.46 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=74.6
Q ss_pred ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.-.++.+|+++|.+++++++||+| + |+++ +|..|+.+. +
T Consensus 8 ~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~------------------------------------~- 50 (98)
T cd04618 8 TKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI------------------------------------L- 50 (98)
T ss_pred CCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh------------------------------------e-
Confidence 346889999999999999999999 4 6888 999998721 0
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~ 129 (188)
.+.++.+++++.+|++.|.+++.+++||+|++ |+++|++|.+|++.
T Consensus 51 ---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 51 ---RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ---eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 06789999999999999999999999999987 89999999999975
No 27
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.5e-12 Score=88.06 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=86.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccC---cccccccccccCcc-cCCcchHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISG---SMRKLGFNLYFGFN-SGNAYFARW 158 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~ 158 (188)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+++.+.... ...++.++|...+. +.+++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 67899999999999999999999999999987 89999999999987543221 12346677765555 999999999
Q ss_pred HHHHHhccCceEEEEEeCCEeeceeec
Q 029781 159 LLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 159 v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+++.|.+++...+||++++.+.|+++.
T Consensus 82 ~~~~~~~~~~~~~~Vvd~~~~~Gvi~~ 108 (114)
T cd04630 82 CARLMERTNIRRAPVVENNELIGIISL 108 (114)
T ss_pred HHHHHHHcCCCEeeEeeCCEEEEEEEH
Confidence 999999999999999988999999985
No 28
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.46 E-value=1.6e-12 Score=87.33 Aligned_cols=102 Identities=25% Similarity=0.205 Sum_probs=86.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (188)
++.+++++.++.++.+.|.+.+.+.+||++++ |+++|+++..++++..........+.+++.+...+.+++.+.++++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLLRPPLFVPESTPLDDLLEE 81 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHHhcCCeecCCCCcHHHHHHH
Confidence 57889999999999999999999999999987 89999999999998765433223345566665558999999999999
Q ss_pred HhccCceEEEEEeC-CEeeceeec
Q 029781 163 VGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 82 MRKERSHMAIVVDEYGGTAGLVTL 105 (111)
T ss_pred HHhcCCcEEEEEECCCCEEEEeEH
Confidence 99999999999976 889999985
No 29
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.9e-12 Score=86.97 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=86.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc---ccccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS---MRKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
++.++.++.++.++++.|.+++.+.+||+|++++++|+++..|+++.+..... ..++.++|.+... +.++.+..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 57789999999999999999999999999988999999999999976543322 2346677755555 8899999999
Q ss_pred HHHHhccCceEEEEEeCCEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
++.|.+.+...+||++++.+.|++|.
T Consensus 82 l~~~~~~~~~~~~Vv~~~~~~Gvit~ 107 (113)
T cd04623 82 MALMTERRFRHLPVVDGGKLVGIVSI 107 (113)
T ss_pred HHHHHHcCCCEeEEEeCCEEEEEEEH
Confidence 99999999988899988999999984
No 30
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=3.7e-13 Score=91.10 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.-.++.+|++.|.+++++.+||+| + ++++ ++.+|+++.... ........++.++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~v~~~~~ 67 (114)
T cd04630 8 GLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA--------------------EGRDPDRVNVYEIMT 67 (114)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh--------------------CCCCCCccCHHHHhc
Confidence 345889999999999999999999 6 7988 999998732100 001223457889998
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
. ++.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus 68 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 68 K--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred C--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 7 8999999999999999999999999999986 99999999999975
No 31
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=4.6e-13 Score=89.88 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=81.8
Q ss_pred cccHHHHHHHHhcCc-----ccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781 6 IPSCLTLARLNANGV-----INSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD 77 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~-----~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 77 (188)
-.++.++++.|.+++ +..+||+| +|+++ ++.+++.+. ....++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---------------------------~~~~~v~~ 57 (109)
T cd04606 5 DWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---------------------------DPDTPVSD 57 (109)
T ss_pred cCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---------------------------CCcchHHH
Confidence 357899999998877 46799998 78888 998887620 12356889
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
+|.+ ++..+.+++++.++++.|.+++...+||+|++|+++|++|..|++++
T Consensus 58 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 58 IMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9988 88999999999999999999999999999988999999999999864
No 32
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=4e-13 Score=91.82 Aligned_cols=108 Identities=10% Similarity=0.141 Sum_probs=81.0
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCC-CCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPP-RNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~im~ 80 (188)
.-.++.+|+++|.+++++.+||+| +|+++ ++.+|+...... .. . ..... ........+.|.
T Consensus 8 ~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~------------~~-~--~~~~~~~~~~~~~~~~~~ 72 (120)
T cd04641 8 PDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE------------GA-Y--NNLDLTVGEALERRSQDF 72 (120)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhc------------Cc-c--ccccCCHHHHHhhcccCC
Confidence 456889999999999999999999 88999 999998832100 00 0 00000 000012234455
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
. ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 73 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 73 E--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred C--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 5 6789999999999999999999999999998899999999999875
No 33
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=2.4e-13 Score=91.94 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=82.4
Q ss_pred ccccHHHHHHHHhcCc-ccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGV-INSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~-~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
+-.++.+|.+.|.+++ .+.+||+| +|+++ ++.+|+++.. .......++.++|.
T Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~-----------------------~~~~~~~~v~~~~~ 64 (114)
T cd04801 8 AHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP-----------------------TSQWAQTTVIQVMT 64 (114)
T ss_pred CCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH-----------------------Hhhccccchhhhhc
Confidence 4568899999997775 88999999 78898 9999987321 01112456888997
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 65 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 65 PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 5223678999999999999999999999999997789999999999875
No 34
>PRK11573 hypothetical protein; Provisional
Probab=99.44 E-value=1.1e-12 Score=107.67 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=99.4
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCc--ccccccccc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGS--MRKLGFNLY 145 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~ 145 (188)
...+.+++++|+|+.++.+++.+.++.++++.+.+++++++||++++ ++++|+++.+|++........ ...+.+++.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r 262 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAAD 262 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhcc
Confidence 45678999999999999999999999999999999999999999754 689999999999975432211 112345677
Q ss_pred cCcccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781 146 FGFNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS 184 (188)
Q Consensus 146 ~~~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit 184 (188)
++..++++.++.++++.|.+++.+++.|+|+ |.+.|+||
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVT 302 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVT 302 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEee
Confidence 8778999999999999999999999999997 89999998
No 35
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.44 E-value=4.7e-13 Score=90.66 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=84.9
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++++.|.+.+++.+||+| +|+++ ++.+|+.+... ........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~---------------------~~~~~~~~~~~~~~~~ 66 (115)
T cd04593 8 ATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE---------------------ADEAGEPSAVDEVATP 66 (115)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh---------------------cccccccccHHHhccC
Confidence 346889999999999999999999 78988 99999873210 0011223458889988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC--CcEEEEEehHHHhhc
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLAL 130 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dl~~~ 130 (188)
++.++.+++++.++++.|.+++...+||+|++ |+++|+||.+|++++
T Consensus 67 --~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 67 --PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred --CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 89999999999999999999999999999876 799999999999753
No 36
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=8.6e-13 Score=88.00 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=82.5
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-.++.++++.|.+.+...+||+|+++++ ++..+++.. ....++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~---------------------------~~~~~~~~~~~~- 60 (107)
T cd04610 9 PDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK---------------------------DPDETVEEIMSK- 60 (107)
T ss_pred CCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------CccccHHHhCCC-
Confidence 34588999999998888899999888888 999998721 113468899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 61 -DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 7899999999999999999999999999998899999999999975
No 37
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.44 E-value=4.5e-13 Score=89.62 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=83.1
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-+++.++.+.|.++++..+||+| +|+++ ++..|+.... ....++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------~~~~~v~~~~~~ 62 (109)
T cd04583 9 PDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------KEAKSLEDIMLE 62 (109)
T ss_pred CCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------hcCCcHhHhhcC
Confidence 345789999999999999999999 68888 9999987311 112467888988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+.++++++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus 63 --~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 63 --DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred --CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 8899999999999999999999999999998899999999999874
No 38
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2e-12 Score=90.45 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=87.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-------------------------cc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-------------------------MR 138 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-------------------------~~ 138 (188)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++....... ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 56789999999999999999999999999988999999999999976643211 23
Q ss_pred ccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 139 KLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
++.++|.+.+. +.+++.+.++++.|.+++.+.+||++++.+.|++|.
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~ 129 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITK 129 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEH
Confidence 46777876655 899999999999999999999999999999999985
No 39
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.44 E-value=1.4e-12 Score=108.42 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=86.8
Q ss_pred cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE 83 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 83 (188)
-.++.+++++|.+++++.+||+|+++++ +|.+|+.. .....++.++|++
T Consensus 104 ~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~---------------------------~~~~~~V~dIMt~-- 154 (475)
T TIGR01303 104 HDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLG---------------------------VDRFTQVRDIMST-- 154 (475)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhc---------------------------CCCCCCHHHHccC--
Confidence 4589999999999999999999977888 99999761 1123479999998
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~ 133 (188)
+++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus 155 ~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 155 DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 89999999999999999999999999999988999999999999986543
No 40
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.43 E-value=7.7e-13 Score=88.17 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=81.3
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|++.|.+++.+.+||+| +|+++ ++..|+.+.. ..++.++|.+
T Consensus 9 ~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~----------------------------~~~~~~~~~~- 59 (106)
T cd04582 9 DDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS----------------------------GGCCGDHAEP- 59 (106)
T ss_pred CCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc----------------------------ccchhhhccc-
Confidence 35788999999999999999999 78998 9999987210 1246788887
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+..+.+++++.++++.|.+++.+.+||+|++|+++|+++.+++++
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 60 -FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 7788999999999999999999999999998889999999999875
No 41
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.7e-12 Score=86.31 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=86.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCcc-cCCcchHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGFN-SGNAYFARWLLK 161 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 161 (188)
++..++++.++.++++.|.+.+.+.+||+|++|+++|+++..|++.+.... .....+.++|..... +.+++.+.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD 81 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHHH
Confidence 577899999999999999999999999999889999999999998754322 122345666765555 899999999999
Q ss_pred HHhccCceEEEEEeCCEeeceeec
Q 029781 162 FVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
.|.+++...+||++++.+.|++|.
T Consensus 82 ~~~~~~~~~~~Vv~~~~~~G~it~ 105 (111)
T cd04626 82 IMREKQIGRLPVVDDNKLIGVVRT 105 (111)
T ss_pred HHHHcCCCeeeEeECCEEEEEEEh
Confidence 999999999999988999999985
No 42
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.4e-12 Score=86.95 Aligned_cols=102 Identities=23% Similarity=0.116 Sum_probs=84.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--ccccccccccc---CcccCCcchHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYF---GFNSGNAYFARW 158 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~ 158 (188)
++.++.+++++.++++.|..++.+.+||+|++|+++|+++..|+.+.....+ ....+.++|.. ...+.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 81 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE 81 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence 5789999999999999999999999999998899999999999987654222 12335566753 334999999999
Q ss_pred HHHHHhccCceEEEEEeC----CEeeceeec
Q 029781 159 LLKFVGGINCGFLLTVEG----AMTANIISS 185 (188)
Q Consensus 159 v~~~l~~~~~~~~~vv~~----~~~~giit~ 185 (188)
++++|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~ 112 (118)
T cd04617 82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITK 112 (118)
T ss_pred HHHHHHHcCCCEeeEEeCCCccceEEEEEEh
Confidence 999999999999999975 489999985
No 43
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=5.8e-13 Score=90.13 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=81.2
Q ss_pred cccHHHHHHHHhcCc-ccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGV-INSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~-~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.++++.|.+++ ...+||+++|+++ ++.+|+++.... .......++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~---------------------~~~~~~~~i~~~~~~- 66 (115)
T cd04620 9 DTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAI---------------------GKDLSDLPIGEVMTQ- 66 (115)
T ss_pred CCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhc---------------------CCCccccCHHHhcCC-
Confidence 457899999998888 6677777788888 999998732100 011123578899987
Q ss_pred CCeeEEcCC--CCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTT--TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~--~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.++ +++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 67 -~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 67 -PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred -CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 78888887 78999999999999999999998899999999999976
No 44
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=5.9e-13 Score=89.76 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=85.5
Q ss_pred cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.+-.++.+|++.|.+.+.+.+||+| +++++ ++..|+.+... ........++.++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~---------------------~~~~~~~~~i~~~~~ 65 (113)
T cd04615 7 VLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL---------------------ESEELKDAKVREVMN 65 (113)
T ss_pred eCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhh---------------------hhhhhcCCcHHHhcc
Confidence 3456889999999999999999999 78888 99999873110 011223457889998
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
+ ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 66 S--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred C--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 8 8999999999999999999999999999998889999999999874
No 45
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.43 E-value=3.5e-12 Score=86.35 Aligned_cols=102 Identities=18% Similarity=0.099 Sum_probs=85.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+....... ...+.++|..... +.+++.+.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l 81 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence 56788999999999999999999999999988999999999999976543322 2225666665555 88999999999
Q ss_pred HHHhccCceEEEEEeC---CEeeceeec
Q 029781 161 KFVGGINCGFLLTVEG---AMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~~---~~~~giit~ 185 (188)
++|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~ 109 (115)
T cd04593 82 DRMASRGLRQLPVVDRGNPGQVLGLLTR 109 (115)
T ss_pred HHHHHcCCceeeEEeCCCCCeEEEEEEh
Confidence 9999999999999975 589999985
No 46
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=3.3e-12 Score=85.72 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=86.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.+++.+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+.........++.++|.+... +.+++.+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence 6788999999999999999889999999997 9999999999998766443333456677766555 9999999999999
Q ss_pred HhccCceEEEEEeCCEeeceeec
Q 029781 163 VGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~~~~~giit~ 185 (188)
|.+++...+||++++...|++|.
T Consensus 82 ~~~~~~~~~~V~~~~~~~Gvvt~ 104 (110)
T cd04595 82 MVEHDIGRVPVVEDGRLVGIVTR 104 (110)
T ss_pred HHHcCCCeeEEEeCCEEEEEEEh
Confidence 99999999999999999999985
No 47
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1e-12 Score=89.77 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=85.4
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++++.|.+++++.+||+| +|+++ ++..++++... ..... . .. .........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~--~~~~~----~-~~-----~~~~~~~~~~~~~~~~~ 75 (122)
T cd04635 8 PDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGS--VRTSV----E-DQ-----QRTQTKASPTVEKIMST 75 (122)
T ss_pred CCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcc--ccccc----c-ch-----hhhhhhccCcHHHHhcC
Confidence 446889999999999999999999 78988 99999874210 00000 0 00 00001234568889987
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+.+++++.++++.|.+++.+.+||++++|+++|++|..|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 --PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred --CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 8899999999999999999999999999998899999999999975
No 48
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.42 E-value=1.4e-12 Score=87.41 Aligned_cols=96 Identities=27% Similarity=0.289 Sum_probs=80.9
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.++++.|.++++..+||+| +|+++ ++.+++... .....++.++|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~--------------------------~~~~~~v~~~~~~- 62 (110)
T cd04601 10 DATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE--------------------------TDLDKPVSEVMTP- 62 (110)
T ss_pred CCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec--------------------------ccCCCCHHHhccc-
Confidence 45789999999999999999999 68888 999887621 1123578899977
Q ss_pred CCeeEEcC-CCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKT-TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~-~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 63 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 63 -ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred -CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 6666666 999999999999999999999998899999999999875
No 49
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=8.1e-13 Score=88.93 Aligned_cols=100 Identities=26% Similarity=0.266 Sum_probs=83.8
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|.+.|.+.++..+||+| +|+++ ++..++++... .......++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~----------------------~~~~~~~~v~~~~~~- 65 (112)
T cd04624 9 DTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA----------------------AGIDLDTPVSEIMTR- 65 (112)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh----------------------ccCCCccCHHHhccC-
Confidence 45789999999999999999999 78988 99999873210 011223468899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 66 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 66 -DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 8899999999999999999999999999998899999999999874
No 50
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=3.3e-12 Score=84.13 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=78.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcccCCcchHHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFV 163 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 163 (188)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.... ...+.+++.+.++.++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~--------------~~~v~~~~~l~~a~~~m 67 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSE--------------VVTATKRTTVSECAQKM 67 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCC--------------cEEecCCCCHHHHHHHH
Confidence 6788999999999999999999999999998899999999999987431 33378889999999999
Q ss_pred hccCceEEEEEeC-CEeeceeec
Q 029781 164 GGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 164 ~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.+++...+||+++ +.+.|++|.
T Consensus 68 ~~~~~~~lpVv~~~~~~~Giit~ 90 (96)
T cd04614 68 KRNRIEQIPIINGNDKLIGLLRD 90 (96)
T ss_pred HHhCCCeeeEECCCCcEEEEEEH
Confidence 9999999999986 799999985
No 51
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.1e-12 Score=87.10 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=81.6
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-.++.++++.|.++++..+||+|+++++ ++.+++.+. ....++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~---------------------------~~~~~~~~~~~~- 59 (105)
T cd04599 8 PLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRA---------------------------HPNRLVADAMTR- 59 (105)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhcc---------------------------cccCCHHHHccC-
Confidence 34578999999999999999999988888 999998721 012357889988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~ 128 (188)
++.++++++++.++++.|.+++.+.+||+|+ |+++|++|.+|++
T Consensus 60 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 60 -EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred -CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 8999999999999999999999999999996 9999999999986
No 52
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=7.8e-13 Score=88.94 Aligned_cols=102 Identities=26% Similarity=0.328 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++.+.|.++++..+||+| +++++ ++.+|+.+.... ........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~~ 67 (113)
T cd04623 8 PDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL--------------------RGASALDTPVSEIMTR 67 (113)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh--------------------cCCCccccCHHHhcCC
Confidence 346899999999999999999999 68888 999998742100 0011224578999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.++.++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 68 --~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 68 --NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred --CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 8899999999999999999999999999986 89999999999975
No 53
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=2.2e-12 Score=107.82 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=87.5
Q ss_pred ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF 78 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 78 (188)
.-.++.+|+++|.+++++.+||+|+ ++++ +|.+|+... ....+.++.++
T Consensus 112 pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-------------------------~~~~~~~V~dI 166 (502)
T PRK07107 112 PDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-------------------------RMSLDTKVKDF 166 (502)
T ss_pred CCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------------ccCCCCCHHHH
Confidence 3468999999999999999999994 6888 999998621 11335679999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
|++..+++++++++++.+|++.|.+++++.+||+|++++++|+||.+|+++..
T Consensus 167 Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 167 MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 98533678999999999999999999999999999889999999999999864
No 54
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.42 E-value=8.2e-13 Score=88.96 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=85.4
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++.+.|.+++++.+||+| +|+++ ++.+|+.+... ........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~---------------------~~~~~~~~~v~~~~~~ 66 (114)
T cd04613 8 EDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF---------------------DPSLYDLVVASDIMTK 66 (114)
T ss_pred CCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh---------------------cccccccEEHHHhccC
Confidence 456889999999999999999999 78888 99999873210 0011123678999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+++.+|++.
T Consensus 67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 67 --PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred --CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 8999999999999999999999999999987 789999999999875
No 55
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=3.8e-12 Score=87.15 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=86.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------------cccccccccccCcc-c
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------------SMRKLGFNLYFGFN-S 150 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------~~~~~~~~~~~~~~-~ 150 (188)
++.++.++.++.++.+.|.+.+.+.+||++++|+++|+++..+++++..... ....+.++|...+. +
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTV 82 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeee
Confidence 6789999999999999999999999999998899999999999987654322 12245667765555 8
Q ss_pred CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.+++++.++++.|.+++...+||++ ++.+.|++|.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 83 RPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQ 118 (124)
T ss_pred CCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEh
Confidence 9999999999999999999999998 7889999985
No 56
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2e-12 Score=88.31 Aligned_cols=112 Identities=25% Similarity=0.284 Sum_probs=86.3
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++.+.|.+.+++.+||++ +|+++ ++.+++++.......... ..........++.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~~ 75 (122)
T cd04803 8 EDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG------------EESLTKERDVPVAEVMKT 75 (122)
T ss_pred CCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc------------ccccccccCcCHHHhhCC
Confidence 446889999999999999999999 68888 999998742110000000 000001235678899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|++++
T Consensus 76 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 76 --DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred --CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 89999999999999999999999999999987899999999999753
No 57
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=1.7e-12 Score=89.52 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=81.0
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|++.|.+++++.+||+| +|+++ ++.+|+++........ ..... .. ............+.|..
T Consensus 9 ~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~-----~~~~~-~~--~~~~~~~~~~~~~~~~~- 79 (126)
T cd04642 9 DERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDL-----LLYRT-IT--FKELSEKFTDSDGVKSR- 79 (126)
T ss_pred CccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchh-----hcccc-hh--hhhhhhhcccccccccC-
Confidence 45789999999999999999999 78888 9999987422110000 00000 00 00000000122345666
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 80 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 -PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 7889999999999999999999999999998899999999999975
No 58
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=1.4e-12 Score=91.29 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=85.9
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccc---hhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVS---REVKAFAHNGVGITNSVPPRNGTYTVGDFM 79 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 79 (188)
-.++.+|++.|.+++.+.+||+| +|+++ ++..|+++........ .....|...... ...........++.++|
T Consensus 9 ~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 87 (135)
T cd04621 9 EHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQ-KRYRYVKEVPLVAEDIM 87 (135)
T ss_pred CCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccc-ccccccccccccHHHhc
Confidence 45799999999999999999999 78999 9999987522110000 000000000000 00000112345789999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+ ++..+.+++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 88 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 88 TE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred CC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 88 8899999999999999999999999999986 89999999999875
No 59
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.41 E-value=4.7e-12 Score=84.89 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=85.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.++.+++++.++.+.|.+.+++.+||+++ |+++|+++..|+++.........++.+++.+... +.++..+.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 80 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL 80 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence 5778999999999999999999999999997 9999999999999876544333456667765555 9999999999999
Q ss_pred HhccCceEEEEEeC-CEeeceeec
Q 029781 163 VGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
|.+.+...+||+++ +.+.|++|.
T Consensus 81 ~~~~~~~~~~V~~~~~~~~G~i~~ 104 (110)
T cd04588 81 MNKHNVGRLIVTDDEGRPVGIITR 104 (110)
T ss_pred HHhcCCCEEEEECCCCCEEEEEEh
Confidence 99999988899976 899999984
No 60
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.6e-12 Score=86.65 Aligned_cols=102 Identities=22% Similarity=0.167 Sum_probs=86.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC----cccccccccccCcc-cCCcchHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG----SMRKLGFNLYFGFN-SGNAYFARW 158 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~ 158 (188)
++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++.+.... ...++.++|.+... +.+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 5778999999999999999888899999998899999999999987543221 23346667765555 899999999
Q ss_pred HHHHHhccCceEEEEEeCCEeeceeec
Q 029781 159 LLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 159 v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+.+.|.+++.+.+||++++.+.|++|.
T Consensus 82 ~~~~~~~~~~~~~~Vv~~~~~~Gvit~ 108 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDDGKLVGQISR 108 (114)
T ss_pred HHHHHHHhCCCccCEEECCEEEEEEEH
Confidence 999999999998999988999999985
No 61
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.40 E-value=1.7e-12 Score=101.00 Aligned_cols=111 Identities=23% Similarity=0.200 Sum_probs=95.9
Q ss_pred CcccccccccCCC-eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCcc
Q 029781 72 TYTVGDFMTKKED-LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGFN 149 (188)
Q Consensus 72 ~~~v~~im~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~~ 149 (188)
..+++++|.+ + +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+..... ....++.++|.+...
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 4789999988 7 88999999999999999999999999999889999999999998765432 233457788877666
Q ss_pred -cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781 150 -SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS 184 (188)
Q Consensus 150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit 184 (188)
+.+++++.++++.|.+++...+||+++ +.+.|+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 999999999999999999999999975 79999985
No 62
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=1.2e-12 Score=87.92 Aligned_cols=99 Identities=28% Similarity=0.349 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-.++.+|.+.|.+++++.+||+|+|+++ ++..|+.+... ......++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~-----------------------~~~~~~~~~~~~~~- 64 (110)
T cd04595 9 PEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALR-----------------------HGLGHAPVKDYMST- 64 (110)
T ss_pred CCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHh-----------------------cccccCcHHHHhcC-
Confidence 34578999999999999999999988888 99999773110 11134678899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus 65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 899999999999999999999999999999 789999999999875
No 63
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.40 E-value=1.3e-12 Score=87.97 Aligned_cols=102 Identities=26% Similarity=0.236 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.++++.|.+.+++.+||+| +|+++ ++..++.+.... .......++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~---------------------~~~~~~~~v~~~~~~ 67 (114)
T cd04604 9 PDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK---------------------GLDILTLPVADVMTR 67 (114)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc---------------------cCccccCCHHHhhcc
Confidence 456789999999888899999999 78988 998887732100 011123468999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 68 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 68 --NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred --CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 8889999999999999999999999999998899999999999975
No 64
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=1.2e-12 Score=89.72 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=85.9
Q ss_pred ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.-.++.+|+++|.++++..+||+| + |+++ ++.+|+.+.... . ..+.... . .........++.++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~---~---~~~~~~~-~---~~~~~~~~~~~~~~~~ 77 (125)
T cd04631 8 PTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG---G---EKFNKIK-T---GNGLEAINEPVRSIMT 77 (125)
T ss_pred CCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc---c---chhcccc-c---cccchhhhcCHHHHhc
Confidence 446889999999999999999999 5 8988 999998742110 0 0000000 0 0001112457889998
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
+ ++.++++++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus 78 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 78 R--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred C--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 8 89999999999999999999999999999977899999999999863
No 65
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=9.2e-13 Score=89.13 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=82.4
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCC---CCcccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRN---GTYTVGDF 78 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~i 78 (188)
+-+++.++++.|.+++++.+||+| +|+++ ++.+|+.+.... ...... ...++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~-------------------~~~~~~~~~~~~~v~~~ 68 (116)
T cd04643 8 DTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG-------------------LENLDLERLVDLKVIDV 68 (116)
T ss_pred CCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc-------------------cCchhHHHHhCCcHHHH
Confidence 346899999999999999999999 78888 999998742210 000000 14578899
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
|.+ ++.++.+++++.++++.|.+++ .+||+|++|+++|++|.+|++++
T Consensus 69 ~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred hcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 998 8999999999999999998765 59999988999999999999753
No 66
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.40 E-value=9.1e-13 Score=105.09 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=86.4
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.+|++.|.+++...+||+| +|+++ ++.+|+.+... .......++.++|.+
T Consensus 214 ~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~----------------------~~~~~~~~v~~im~~ 271 (321)
T PRK11543 214 LTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV----------------------GGGALTTPVNEAMTR 271 (321)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh----------------------CCCCcCCcHHHhcCC
Confidence 356889999999999999999999 88999 99999763110 011224568999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|++++
T Consensus 272 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 --GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred --CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 89999999999999999999999999999988899999999999864
No 67
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.40 E-value=6.9e-12 Score=84.27 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=85.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--CcccccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--GSMRKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.+++++.++.++.+.|.+.+...+||+|+ |+++|+++..++++..... ....++.++|.+... +.+++.+.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 5678899999999999999999999999997 8999999999998765332 123446677766555 89999999999
Q ss_pred HHHhccCceEEEEEeCCEeeceeec
Q 029781 161 KFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+.|.+++...+||++++.+.|++|.
T Consensus 81 ~~~~~~~~~~~~Vv~~~~~~G~it~ 105 (111)
T cd04589 81 LLMTRHRIHRVVVREGGEVVGVLEQ 105 (111)
T ss_pred HHHHHhCccEEEEeeCCEEEEEEEh
Confidence 9999999999999999999999985
No 68
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=1.8e-12 Score=85.38 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=74.0
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|++.|.+++++.+||+| +|+++ ++.+|+.+. .
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------------~- 49 (96)
T cd04614 9 ETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------------S- 49 (96)
T ss_pred CCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC--------------------------------------C-
Confidence 45788999999999999999999 78988 899998710 0
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 50 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 -EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred -CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1678899999999999999999999999998789999999999975
No 69
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.40 E-value=1.6e-12 Score=88.55 Aligned_cols=112 Identities=26% Similarity=0.331 Sum_probs=85.8
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.++.+.|.+.++..+||+|+|+++ ++..++.......... ... ..........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~- 75 (122)
T cd04585 8 PDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATT----LDI-------WELYYLLSKIKVSDIMTR- 75 (122)
T ss_pred CCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccc----ccc-------hhhhhhhcccCHHHhccC-
Confidence 34678999999999999999999988888 9999987422100000 000 000001124578899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++++++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 -DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 8999999999999999999999999999998799999999999975
No 70
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=6.9e-12 Score=84.35 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=85.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-CcccccccccccCcc-cCCcchHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-GSMRKLGFNLYFGFN-SGNAYFARWLLK 161 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 161 (188)
++.++.++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++.+... +....+.++|.+.+. +.+++...++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~ 81 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHH
Confidence 577899999999999999999999999999889999999999998765432 223346677765555 888999999999
Q ss_pred HHhccCceEEEEEeC-CEeeceeec
Q 029781 162 FVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~~Vv~~~g~~~Gilt~ 106 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISI 106 (112)
T ss_pred HHHHcCccEEEEEcCCCcEEEEEEH
Confidence 999888888899875 888999985
No 71
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=1.3e-12 Score=88.20 Aligned_cols=103 Identities=24% Similarity=0.251 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.+|.+.|.+++++.+||++ +++++ ++..++.+.... .........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-------------------~~~~~~~~~~v~~~~~~ 68 (114)
T cd04629 8 PDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE-------------------SSYHCDGVATVRDIMTT 68 (114)
T ss_pred CCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhh-------------------hhhccCCCccHHHHhcc
Confidence 446889999999999999999999 78888 999998732100 00011224578899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 69 --EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred --CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 8899999999999999999999999999996 89999999999975
No 72
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=1.3e-12 Score=87.86 Aligned_cols=100 Identities=25% Similarity=0.182 Sum_probs=83.2
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.++++.|.+++++.+||+| +|+++ ++.+|+..... .......++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~----------------------~~~~~~~~v~~~~~~ 65 (111)
T cd04626 8 EDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL----------------------FESFLEKKVFNIVSQ 65 (111)
T ss_pred CCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh----------------------hcccccCcHHHHhcC
Confidence 345788999999999999999999 78888 99999873110 001123468889988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus 66 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 66 --DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred --CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 8899999999999999999999999999997 89999999999864
No 73
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.3e-12 Score=89.10 Aligned_cols=102 Identities=27% Similarity=0.344 Sum_probs=86.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc------------------------Ccccc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS------------------------GSMRK 139 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~------------------------~~~~~ 139 (188)
++.++.++.++.++++.|.+++...+||+|++|+++|+++..|+++..... .....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 678899999999999999999999999999889999999999998654321 11234
Q ss_pred cccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 140 LGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 140 ~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+.++|.+... +.++.+..++++.|.+.+.+.+||++++.+.|++|.
T Consensus 83 v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~ 129 (135)
T cd04586 83 VADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSR 129 (135)
T ss_pred HHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEh
Confidence 5666766555 899999999999999999999999999999999985
No 74
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.8e-12 Score=86.40 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=85.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-----------cccccccccccCcc-cC
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-----------SMRKLGFNLYFGFN-SG 151 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-----------~~~~~~~~~~~~~~-~~ 151 (188)
++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++++...... ....+.+++...+. +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 81 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence 5788999999999999999999999999998899999999999987654321 12345666755555 89
Q ss_pred CcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 152 NAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 152 ~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+++...++++.|.+++...+||+++ +...|++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~ 116 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITR 116 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEH
Confidence 9999999999999999999999986 789999985
No 75
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.40 E-value=1.3e-12 Score=87.58 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.++.+.|.+++++.+||+++++++ ++..|+++... ......++.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~-----------------------~~~~~~~v~~~~~~- 63 (110)
T cd04588 8 PNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIA-----------------------RGLELAKVKDVMTK- 63 (110)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHh-----------------------ccccccCHHHHhcC-
Confidence 34689999999999999999999988877 99999873210 11122568889987
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.++.++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 64 -DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 8899999999999999999999999999998799999999999874
No 76
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1.1e-12 Score=91.53 Aligned_cols=122 Identities=27% Similarity=0.272 Sum_probs=85.3
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCC-CCCCCCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITN-SVPPRNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~im~ 80 (188)
.-.++.++.+.|.++++.++||+| +++++ ++.+|+.+....-......+........... .........++.++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 88 (135)
T cd04586 9 PETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRKVADVMT 88 (135)
T ss_pred CCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCCHHHHhC
Confidence 345789999999999999999999 78888 9999987422110000000000000000000 0000113457889998
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
+ ++..+++++++.++++.|.+++.+.+||+| +|+++|+||.+|+++
T Consensus 89 ~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 89 R--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred C--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 8 899999999999999999999999999999 799999999999875
No 77
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1.5e-12 Score=87.39 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=83.0
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.++++.|.++++..+||+| +|+++ ++.+++++... ....++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------~~~~~~~~~~~~ 63 (110)
T cd04605 9 EDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------RDKKSVEDIMTR 63 (110)
T ss_pred CCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------hCccCHHHhcCC
Confidence 446889999999999999999999 78988 99999863110 011248888987
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||++++|+++|++|..|+++
T Consensus 64 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 64 --NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred --CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 8899999999999999999999999999998899999999999864
No 78
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.3e-12 Score=87.00 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=82.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc---------------cccccccCc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK---------------LGFNLYFGF 148 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---------------~~~~~~~~~ 148 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+++.......... ....+....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPL 81 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCC
Confidence 57889999999999999999999999999988999999999999876533221110 112343434
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
. +.+++++.++++.|.+++.+.+||+++ +.+.|++|.
T Consensus 82 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~ 120 (126)
T cd04642 82 ITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITL 120 (126)
T ss_pred eEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEH
Confidence 4 899999999999999999999999986 789999985
No 79
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.39 E-value=2e-12 Score=86.76 Aligned_cols=101 Identities=30% Similarity=0.352 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.++++.|.+.+++.+||+|+++++ ++..|+.+... .......++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~----------------------~~~~~~~~~~~~~~~- 64 (111)
T cd04612 8 VDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPA----------------------EGREATVLVGDVMTR- 64 (111)
T ss_pred CCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHh----------------------cCcccccCHHHhccC-
Confidence 45689999999999999999999888888 99999873210 001111467788988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 65 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 65 -DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 8999999999999999999999999999998799999999999975
No 80
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.39 E-value=2e-12 Score=87.51 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=80.5
Q ss_pred ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF 78 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 78 (188)
.-.++.++.+.|.+++.+.+||+|+ |+++ ++.+|+... .....++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~--------------------------~~~~~~v~~~ 62 (114)
T cd04602 9 PDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL--------------------------TDSETPLSEV 62 (114)
T ss_pred CCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh--------------------------hccCCCHHHh
Confidence 3457899999999999999999984 7888 998887610 0112458899
Q ss_pred cccCCCeeEEcC--CCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 79 MTKKEDLHAVKT--TTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 79 m~~~~~~~~v~~--~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
|.. .+..+.. ++++.++++.|.+++...+||++++|+++|+||.+|+++
T Consensus 63 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 63 MTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred cCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 987 6777766 999999999999999999999998899999999999874
No 81
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.39 E-value=2e-12 Score=86.71 Aligned_cols=101 Identities=25% Similarity=0.257 Sum_probs=84.6
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.+|.+.|.++++..+||+++++++ ++.+|+.+... .......++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~----------------------~~~~~~~~v~~~~~~- 64 (111)
T cd04611 8 PDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA----------------------SGPDLQTPVGEVMSS- 64 (111)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh----------------------cCCCCCcCHHHhcCC-
Confidence 44688999999999899999999988888 99999873210 001135678899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 65 -~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 65 -PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 8899999999999999999999999999998899999999999875
No 82
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=2e-13 Score=94.12 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=83.4
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.++++.|.++++..+||+| +|+++ ++.+++++.... .......++.++|.+
T Consensus 9 ~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~---------------------~~~~~~~~v~~im~~ 67 (124)
T cd04608 9 PTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS---------------------GKVQPSDPVSKALYK 67 (124)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH---------------------hccCCCCcHHHHhhc
Confidence 346899999999999999999999 78888 999998732100 112345689999999
Q ss_pred CCCeeEEcCCCCHHHHHHHHH---------hcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 82 KEDLHAVKTTTTVDEALERLV---------EKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~---------~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
++.++.+++++.++.+++. +.+...+||++++|+++|+||.+|++++
T Consensus 68 --~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 68 --QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 8999999999999999653 3356778899888999999999999875
No 83
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.39 E-value=6.7e-12 Score=84.44 Aligned_cols=102 Identities=22% Similarity=0.126 Sum_probs=86.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-c-cccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-M-RKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.++.++.++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+....... . .++.++|.+... +.+++...+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 81 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence 67889999999999999999999999999988999999999999876543222 1 456777766666 99999999999
Q ss_pred HHHhccCceEEEEEeC--CEeeceeec
Q 029781 161 KFVGGINCGFLLTVEG--AMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~~--~~~~giit~ 185 (188)
+.|...+...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~ 108 (114)
T cd04613 82 KKFEDSDYEQLPVVDDDPGKLLGILSR 108 (114)
T ss_pred HHHhhCCccEeeEEeCCCCEEEEEEEh
Confidence 9999999999999986 899999985
No 84
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.39 E-value=4.6e-12 Score=106.12 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=87.7
Q ss_pred cccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM 79 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 79 (188)
-.++.+|.++|.+++++.+||+|+ ++++ +|.+|+.. ......++.++|
T Consensus 116 d~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~--------------------------v~~~~~~V~eIM 169 (505)
T PLN02274 116 SSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF--------------------------VNDRETKLSEVM 169 (505)
T ss_pred CCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh--------------------------ccccCCcHHHHh
Confidence 458999999999999999999984 6888 99999861 112356799999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781 80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133 (188)
Q Consensus 80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~ 133 (188)
++..++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|++++...
T Consensus 170 t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 170 TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 972237899999999999999999999999999988999999999999987754
No 85
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.39 E-value=2.3e-12 Score=110.19 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=98.0
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--ccccccccccc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYF 146 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~ 146 (188)
.....+++|+|++ ++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+...... ....+.++|.+
T Consensus 443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~ 520 (574)
T PRK01862 443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT 520 (574)
T ss_pred HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence 3456789999998 8899999999999999999999999999998899999999999987543222 22456778877
Q ss_pred Ccc-cCCcchHHHHHHHHhccCceEEEEEeC---CEeeceeec
Q 029781 147 GFN-SGNAYFARWLLKFVGGINCGFLLTVEG---AMTANIISS 185 (188)
Q Consensus 147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~---~~~~giit~ 185 (188)
... +.+++++.++.+.|.+++...+||+|+ +++.|+||.
T Consensus 521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~ 563 (574)
T PRK01862 521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK 563 (574)
T ss_pred CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence 666 999999999999999999999999975 379999985
No 86
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=2.1e-12 Score=86.97 Aligned_cols=103 Identities=32% Similarity=0.350 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.+|.+.|.+++++.+||+++|+++ ++..+++.... . ........++.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~-----------~---------~~~~~~~~~~~~~~~~- 66 (113)
T cd04622 8 PDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAV-----------A---------EGRDPDTTTVGDVMTR- 66 (113)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHh-----------h---------ccCCcccCCHHHhccC-
Confidence 45688999999999999999999988888 99988762100 0 0011122358899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+.++.+++++.++++.|.+.+.+.+||++++|+++|+++..|+++
T Consensus 67 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 67 -GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred -CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 8899999999999999999999999999997799999999999975
No 87
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.39 E-value=1.7e-12 Score=87.44 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=83.2
Q ss_pred cccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE 83 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 83 (188)
-.++.++.+.|.+++.+.+||+++++++ ++..|++..... ........++.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~v~~i~~~-- 66 (113)
T cd04587 9 TTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVA--------------------QGLDPESTLVERVMTP-- 66 (113)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHh--------------------cCCCcCcCCHHHhcCC--
Confidence 3578999999998999999999988888 999998621100 0011112578899987
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||++++|+++|++|..|++.
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 67 NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 8889999999999999999999999999998799999999999874
No 88
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.39 E-value=1.9e-12 Score=86.97 Aligned_cols=101 Identities=30% Similarity=0.303 Sum_probs=83.6
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.++.+.|.++++..+||+|+++++ ++..++...... .......++.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~---------------------~~~~~~~~i~~~~~~- 65 (111)
T cd04800 8 PDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVA---------------------EGLDPDTPVSEVMTA- 65 (111)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhc---------------------cCCCccCCHHHHhCC-
Confidence 34678999999999899999999988888 999997731100 011123578899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+++++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 66 -PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999986 89999999999975
No 89
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=2.1e-12 Score=89.67 Aligned_cols=121 Identities=22% Similarity=0.208 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-+++.+|.+.|.+.+++++||+| +|+++ ++..++.+.............+....... ..........++.++|.+
T Consensus 8 ~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~ 86 (132)
T cd04636 8 KDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD-ESKIKKLLGKKVEEIMTK 86 (132)
T ss_pred CCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccc-hHHHHHHcCCCHHHhccC
Confidence 446899999999999999999999 78888 99988874221100000000000000000 000001112378899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 87 --~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 87 --KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred --CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8899999999999999999999999999997 99999999999975
No 90
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.39 E-value=3.5e-12 Score=106.87 Aligned_cols=143 Identities=23% Similarity=0.260 Sum_probs=105.8
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc-c
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT-K 81 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~ 81 (188)
-.++.++.++|.+++++.+||+| +++++ +|.+|+... .....++.++|. .
T Consensus 103 ~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~--------------------------~~~~~~V~dim~~~ 156 (486)
T PRK05567 103 DTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE--------------------------TDLSQPVSEVMTKE 156 (486)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc--------------------------ccCCCcHHHHcCCC
Confidence 35889999999999999999999 88999 999998621 112347899998 5
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc------ccccccccCcccCCcch
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR------KLGFNLYFGFNSGNAYF 155 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 155 (188)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++......... .++..|.. .+ ..
T Consensus 157 --~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~----~~-~~ 229 (486)
T PRK05567 157 --RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV----GA-DN 229 (486)
T ss_pred --CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc----Cc-ch
Confidence 7899999999999999999999999999999999999999999997654321110 12222221 22 22
Q ss_pred HHHHHHHHhccCceEEEEEe--CCEeecee
Q 029781 156 ARWLLKFVGGINCGFLLTVE--GAMTANII 183 (188)
Q Consensus 156 ~~~v~~~l~~~~~~~~~vv~--~~~~~gii 183 (188)
.+..+.|.+.+.+++ +++ ++...+++
T Consensus 230 -~e~a~~L~~agvdvi-vvD~a~g~~~~vl 257 (486)
T PRK05567 230 -EERAEALVEAGVDVL-VVDTAHGHSEGVL 257 (486)
T ss_pred -HHHHHHHHHhCCCEE-EEECCCCcchhHH
Confidence 455566667788864 555 35554443
No 91
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.39 E-value=5.5e-12 Score=104.26 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=100.5
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEc-CCCcEEEEEehHHHhhchhccCcccccccccccC
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVID-DDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG 147 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~ 147 (188)
...+.+++++|+|+.++..++.+.+..++.+.+.+++++++||++ +.+.++|+++.+|++.+.............+.++
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~ 281 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPP 281 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCC
Confidence 456789999999999999999999999999999999999999998 4578999999999998776554312223345577
Q ss_pred cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781 148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS 184 (188)
Q Consensus 148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit 184 (188)
..+++..++.++++.|.+.+.++++|+|+ |.+.|+||
T Consensus 282 ~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVT 319 (429)
T COG1253 282 LFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVT 319 (429)
T ss_pred eEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeE
Confidence 77999999999999999999999999997 89999998
No 92
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=7.7e-12 Score=84.35 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=86.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc-cCcccccccccccCcc-cCCcchHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI-SGSMRKLGFNLYFGFN-SGNAYFARWLLK 161 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 161 (188)
.+.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.... ......+.++|.+... +.+++.+.++++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA 82 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence 45788999999999999999999999999988999999999999865432 2223456777876666 999999999999
Q ss_pred HHhccCceEEEEEe-CCEeeceeec
Q 029781 162 FVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.|.+++...+||++ ++.+.|++|.
T Consensus 83 ~~~~~~~~~~~Vv~~~~~~~Gvit~ 107 (113)
T cd04607 83 LMRERSIRHLPILDEEGRVVGLATL 107 (113)
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEh
Confidence 99999999999997 5789999985
No 93
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=7e-12 Score=87.07 Aligned_cols=102 Identities=24% Similarity=0.288 Sum_probs=84.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcc----------------------cccc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSM----------------------RKLG 141 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~----------------------~~~~ 141 (188)
++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..++++........ .++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 578899999999999999999999999999889999999999998765432110 1455
Q ss_pred cccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 142 FNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 142 ~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
++|.+... +.+++.+.++.++|.+.+...+||++++...|++|.
T Consensus 82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~ 126 (132)
T cd04636 82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISR 126 (132)
T ss_pred HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEH
Confidence 66655545 888999999999999999999999988999999985
No 94
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.5e-12 Score=86.48 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=85.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCc-------------ccccccccccCcc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGS-------------MRKLGFNLYFGFN 149 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~-------------~~~~~~~~~~~~~ 149 (188)
++.++.++.++.++++.|.+.+.+.+||+|++ |+++|+++..|+++++..... ..++.+++.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI 81 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence 57789999999999999999999999999987 899999999999976643221 1245566665555
Q ss_pred -cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 150 -SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 150 -~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+.+++.+.++++.|.+.+...++|+++ +.+.|+||.
T Consensus 82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~ 119 (125)
T cd04631 82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTE 119 (125)
T ss_pred EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEH
Confidence 999999999999999999999999986 899999985
No 95
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.38 E-value=1.4e-12 Score=104.18 Aligned_cols=102 Identities=19% Similarity=0.077 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.+|+++|.+++.+.+||+| +|+++ +|.+|+.+... ........++.++|.+
T Consensus 219 ~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~---------------------~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 219 KTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD---------------------MGIDLRQASIADVMTP 277 (326)
T ss_pred CCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh---------------------cCCCcccCCHHHhcCC
Confidence 357889999999999988888888 88999 99999863110 0012334679999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
++.++.+++++.++++.|.+++.+.+||++ +|+++|+||..|++++
T Consensus 278 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 278 --GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred --CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 899999999999999999999999999998 5899999999999875
No 96
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.7e-12 Score=86.42 Aligned_cols=102 Identities=14% Similarity=0.015 Sum_probs=82.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCccc-----------ccccccccCcc-c
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMR-----------KLGFNLYFGFN-S 150 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~-----------~~~~~~~~~~~-~ 150 (188)
++.++.+++++.++++.|.+++.+++||+|++ |+++|+++..|+++.+....... .....+...+. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 57789999999999999999999999999987 89999999999987543221110 01124545444 8
Q ss_pred CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.+++++.++++.|.+++...+||+++ +.+.|+||.
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~ 117 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISV 117 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeH
Confidence 99999999999999999999999974 788999985
No 97
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.38 E-value=2.2e-12 Score=85.97 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=80.9
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.++++.|.+.+++.+||+|+++++ ++.+++.+. . ..++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~--------------------------~--~~~~~~~~~~- 58 (104)
T cd04594 8 DYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENA--------------------------T--YGDVVDYIVR- 58 (104)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhh--------------------------c--ccchhhhhhc-
Confidence 45689999999999999999999888888 998887721 0 1246778887
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.+.+++++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 59 -~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 -GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 789999999999999999999999999998 589999999999875
No 98
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1e-12 Score=90.61 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=80.5
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.+|++.|.+++...+||+| +|+++ ++..|+.+.... +.... ........++.++|.+
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~-------~~~~~--------~~~~~~~~~v~~im~~- 72 (126)
T cd04640 9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI-------KRIQE--------GGISRSELTVADVMTP- 72 (126)
T ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh-------HHHHH--------cCCCchheEHHHhcCc-
Confidence 45889999999999999999999 78988 999998731100 00000 0011234678999986
Q ss_pred CCeeE--E----cCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhh
Q 029781 83 EDLHA--V----KTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~--v----~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~ 129 (188)
++.. + .+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 73 -~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 73 -KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred -hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 5433 3 368899999999999999999999976 79999999999975
No 99
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=2.1e-12 Score=88.57 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=80.6
Q ss_pred cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
-.++.+|++.|.++++.++||+| + |+++ ++..|+++...... . .. .. ..........+.++|..
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~-~---~~---~~-----~~~~~~~~~~~~~~~~~ 76 (123)
T cd04627 9 TASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENA-R---SF---PG-----LDPLYPIPLRDLTIGTS 76 (123)
T ss_pred CCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhH-H---hc---cc-----hhhhhhhhhhhcccCcC
Confidence 35889999999999999999999 6 8888 99999874210000 0 00 00 00000011233457777
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLL 128 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~ 128 (188)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+.
T Consensus 77 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 77 --DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred --CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 889999999999999999999999999999889999999999985
No 100
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.37 E-value=5.3e-12 Score=105.02 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN- 149 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~- 149 (188)
...++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+.... ...++.++|.+.+.
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----~~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----RFTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----cCCCHHHhccCCceE
Confidence 35677889998 999999999999999999999999999999889999999999996432 22457888887666
Q ss_pred cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 150 SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 150 ~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
+.+++.+.+++++|.+++...+||++ ++.+.|+||.
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~ 197 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTR 197 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEH
Confidence 99999999999999999999999998 5899999985
No 101
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.37 E-value=1.3e-11 Score=82.20 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=82.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.+++++.++.++++.|.+.+.+.+||+|++|+++|+++..|+++... ..+.+++.+... +.+++.+.++++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----cchhhhcccCCEEECCCCCHHHHHHH
Confidence 5778999999999999999999999999998899999999999986532 124666766545 8889999999999
Q ss_pred HhccCceEEEEEeC-CEeeceeec
Q 029781 163 VGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
|.+++...+||+++ +.+.|++|.
T Consensus 77 ~~~~~~~~~~Vv~~~~~~~Gvi~~ 100 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQ 100 (106)
T ss_pred HHHCCCCeeeEECCCCcEEEEEEH
Confidence 99999999999975 689999985
No 102
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=1.4e-11 Score=82.62 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=83.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.++.++.++.++++.|.+++.+.+||+|++|+++|+++.+++++...... ..+.++|..... +.+++.+.++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--KSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--cCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 6788999999999999999999999999998899999999999987554322 235666655555 8889999999999
Q ss_pred HhccCceEEEEEe-CCEeeceeec
Q 029781 163 VGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
|.+++...+||++ ++.+.|++|.
T Consensus 81 ~~~~~~~~~~Vv~~~~~~~G~v~~ 104 (110)
T cd04605 81 MERHNISALPVVDAENRVIGIITS 104 (110)
T ss_pred HHHhCCCEEeEECCCCcEEEEEEH
Confidence 9999988888887 4799999985
No 103
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.36 E-value=5.3e-12 Score=87.01 Aligned_cols=102 Identities=24% Similarity=0.213 Sum_probs=83.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++..++++.....+ ...++.++|.+.+. +.+++.+.++.
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~ 82 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHH
Confidence 6789999999999999999999999999998899999999999997554332 34568889987777 99999999998
Q ss_pred HHHhcc---------CceEEEEEe-CCEeeceeec
Q 029781 161 KFVGGI---------NCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 161 ~~l~~~---------~~~~~~vv~-~~~~~giit~ 185 (188)
+++..+ +...+||++ ++.+.|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~ 117 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTK 117 (124)
T ss_pred hhcccCCceEEEeccccccccccccccceEEEEeh
Confidence 865432 445556665 4899999996
No 104
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.4e-11 Score=83.23 Aligned_cols=100 Identities=22% Similarity=0.162 Sum_probs=81.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc-------ccccccccccCcc-cCCcch
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS-------MRKLGFNLYFGFN-SGNAYF 155 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~ 155 (188)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+++....... ..++.++|.+.+. +.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 81 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD 81 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence 57889999999999999999999999999988999999999999876543211 2346677776555 888999
Q ss_pred HHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 156 ARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 156 ~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
+.++++.|.+.+ .+||++ ++.+.|++|.
T Consensus 82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~ 110 (116)
T cd04643 82 IEEILHLLIDQP--FLPVVDDDGIFIGIITR 110 (116)
T ss_pred HHHHHHHHhcCC--ceeEEeCCCeEEEEEEH
Confidence 999999998754 467886 5899999985
No 105
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.5e-11 Score=84.80 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=81.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch-----hc---cCcccccccccccCcc-c----
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD-----SI---SGSMRKLGFNLYFGFN-S---- 150 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~-----~~---~~~~~~~~~~~~~~~~-~---- 150 (188)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.+.. .. .....++.++|.+... .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 467899999999999999999999999999889999999999998522 11 1223446777865433 2
Q ss_pred --CCcchHHHHHHHHhccCceEEEEEeC--CEeeceeec
Q 029781 151 --GNAYFARWLLKFVGGINCGFLLTVEG--AMTANIISS 185 (188)
Q Consensus 151 --~~~~~~~~v~~~l~~~~~~~~~vv~~--~~~~giit~ 185 (188)
.+++++.++++.|.+++...+||+++ +.+.|+||.
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~ 120 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIIST 120 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeH
Confidence 25788899999999999999999986 589999985
No 106
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.35 E-value=1.9e-11 Score=81.87 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=84.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC-cccccccccccCcc-cCCcchHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG-SMRKLGFNLYFGFN-SGNAYFARWLLK 161 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~v~~ 161 (188)
++.++.++.++.++++.|.+.+.+.+||+++ |+++|+++.+|+++...... ....+.++|.+... +.+++.+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 80 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence 5678999999999999999989999999986 89999999999987664333 23446677765555 888999999999
Q ss_pred HHhccCceEEEEEeC-CEeeceeec
Q 029781 162 FVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.|.+.+...++|+++ +.+.|+++.
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~ 105 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQ 105 (111)
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEh
Confidence 999999988899975 888999984
No 107
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.4e-11 Score=82.50 Aligned_cols=98 Identities=22% Similarity=0.157 Sum_probs=84.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.++.+++++.++.+.|.+++.+.+||+|++|+++|+++..+++... ...++.++|..... +.++.++.++++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----PDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 678899999999999999999999999999889999999999998542 23346677765544 8999999999999
Q ss_pred HhccCceEEEEEe-CCEeeceeec
Q 029781 163 VGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
|.+++...+||++ ++.+.|++|.
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~G~it~ 102 (108)
T cd04596 79 MIWEGIEMLPVVDDNKKLLGIISR 102 (108)
T ss_pred HHHcCCCeeeEEcCCCCEEEEEEH
Confidence 9999999999997 6899999985
No 108
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.34 E-value=4.2e-12 Score=85.31 Aligned_cols=101 Identities=22% Similarity=0.172 Sum_probs=83.1
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.++++.|.+++...+||+|++++. ++.++++.... ........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~---------------------~~~~~~~~~i~~~~~~- 65 (111)
T cd04589 8 ASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVL---------------------LDGLPSSTPVGEIATF- 65 (111)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHH---------------------cCCCCCCCCHHHHhCC-
Confidence 44589999999999999999999877778 99999773110 0011234578899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+++++++.++++.|.+++...+||+++ |+++|++|..|+++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 66 -PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 8999999999999999999999999999985 89999999999875
No 109
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.6e-11 Score=84.64 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=83.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---------------CcccccccccccCc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---------------GSMRKLGFNLYFGF 148 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---------------~~~~~~~~~~~~~~ 148 (188)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|++|..|+...+... .....+.++|....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 567899999999999999999999999999889999999999998653211 11223566775555
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEeC---CEeeceeec
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVEG---AMTANIISS 185 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~---~~~~giit~ 185 (188)
. +.++..+.+++++|.+.+...+||+++ +.+.|+||.
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~ 122 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTK 122 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEh
Confidence 4 889999999999999988888888854 899999985
No 110
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=3.5e-12 Score=85.80 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=81.7
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-.++.++++.|.+++...++|.++|+++ ++.+|+.+.... ........++.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~v~~~~~~- 66 (112)
T cd04625 8 PETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQ--------------------HGAGVLDTTVRAIMNP- 66 (112)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHh--------------------cCCchhcCCHHHHhCC-
Confidence 34588999999988888777777788888 999998732100 0011123578999987
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 67 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 67 -EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 788999999999999999999999999998 589999999999975
No 111
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=2.5e-11 Score=81.44 Aligned_cols=101 Identities=22% Similarity=0.154 Sum_probs=84.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.+++.+.++.++.+.|.+.+.+.+||+|+ |+++|+++..++++.....+ ....+.+++...+. +.+++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 6788999999999999999988999999997 99999999999986432221 12345666655555 89999999999
Q ss_pred HHHhccCceEEEEEeCCEeeceeec
Q 029781 161 KFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+.|.+++...+||++++.+.|++|.
T Consensus 81 ~~~~~~~~~~~~Vv~~~~~~Giit~ 105 (111)
T cd04800 81 LLMLERGIHHLPVVDDGRLVGVISA 105 (111)
T ss_pred HHHHHcCCCeeeEeECCEEEEEEEH
Confidence 9999999999999988999999984
No 112
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.34 E-value=1.2e-11 Score=103.55 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=86.9
Q ss_pred cccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM 79 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 79 (188)
-.++.+|.++|.+++++.+||+|+ ++++ +|.+|+.. ......++.++|
T Consensus 112 d~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~--------------------------~~~~~~~V~diM 165 (495)
T PTZ00314 112 NHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF--------------------------VKDKSTPVSEVM 165 (495)
T ss_pred CCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh--------------------------cccCCCCHHHhh
Confidence 458999999999999999999984 6888 99999761 112246799999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
++..++.+++++.++.+++++|.+++...+||+|++++++|+||.+|+++...
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 86446789999999999999999999999999999999999999999997654
No 113
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.34 E-value=3.8e-12 Score=85.45 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=80.7
Q ss_pred ccccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.-.++.+|++.|.+++++.+||++ + |+++ ++..++.+... .......+.++|
T Consensus 8 ~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~-----------------------~~~~~~~~~~~~- 63 (111)
T cd04590 8 ADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA-----------------------EGEEDLDLRDLL- 63 (111)
T ss_pred CCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH-----------------------cCCCcCCHHHHh-
Confidence 346889999999999999999999 6 8888 99999874210 001113566666
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
. ++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 64 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 4 5788999999999999999999999999998899999999999864
No 114
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=4.8e-12 Score=86.30 Aligned_cols=110 Identities=28% Similarity=0.415 Sum_probs=85.1
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCccccccccc-ccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFF-TVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.++++.|.+++++.+||+|+|+++ ++..++.+..... ...+. . .........++.++|..
T Consensus 8 ~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~ 75 (121)
T cd04633 8 PDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRD-----R-------HQERRIRNLPVSDIMTR 75 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccc-----h-------hhhhhhhccCHHHHccC
Confidence 34688999999999999999999988888 9999987422110 00000 0 00011234578889988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 --PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred --CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999997 89999999999975
No 115
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.3e-11 Score=81.86 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=83.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.....+ ...++.++|..... +.+++.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 4678899999999999999999999999998899999999999987432221 23346677765555 88899999999
Q ss_pred HHHhccCceEEEEEeC-CEeeceeec
Q 029781 161 KFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+.|.+.+...+||+++ +.+.|++|.
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~ 107 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTE 107 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEH
Confidence 9999989888899975 699999985
No 116
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.33 E-value=5e-12 Score=104.11 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=101.3
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccCc
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFGF 148 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~~ 148 (188)
-.+++.+++.. +++++++.+++.+|.+.|..+|++.+.++++++...||||.+|+....-..+ ...+++++|+.++
T Consensus 147 ~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~ 224 (610)
T COG2905 147 ILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPV 224 (610)
T ss_pred HHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCc
Confidence 34678999998 9999999999999999999999999999999999999999999997654333 3556899998777
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
. +...+++.+++-+|.++++.++||.++|...|++|-
T Consensus 225 ~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~ 262 (610)
T COG2905 225 ISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTL 262 (610)
T ss_pred eeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeH
Confidence 7 999999999999999999999999999999999973
No 117
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2.7e-11 Score=80.40 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=83.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.++.+++++.++++.|.+++.+.+||+| +++++|+++..++.+... ...+.++|.+... +.+++.+.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 567899999999999999999999999998 589999999999987432 2335666766555 8999999999999
Q ss_pred HhccCceEEEEEeCCEeeceeec
Q 029781 163 VGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~~~~~giit~ 185 (188)
|.+++...+||++++.+.|++|.
T Consensus 77 ~~~~~~~~~~Vv~~~~~~G~it~ 99 (105)
T cd04599 77 MEEKKIERLPVLRERKLVGIITK 99 (105)
T ss_pred HHHcCCCEeeEEECCEEEEEEEH
Confidence 99999999999999999999985
No 118
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.33 E-value=4.8e-12 Score=75.19 Aligned_cols=55 Identities=42% Similarity=0.601 Sum_probs=52.1
Q ss_pred cccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 75 VGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 75 v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
++++|.+ ++.++++++++.++++.|.+++.+++||+|++|+++|++|.+|+++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4689999 999999999999999999999999999999999999999999999875
No 119
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.33 E-value=2.3e-11 Score=81.54 Aligned_cols=101 Identities=27% Similarity=0.289 Sum_probs=84.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-ccccccccCcc-cCCcchHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-KLGFNLYFGFN-SGNAYFARWLLK 161 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v~~ 161 (188)
++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+......... .+.+.+.+... +.+++...++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK 80 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence 6788999999999999999999999999997 99999999999987664322211 34555655555 899999999999
Q ss_pred HHhccCceEEEEEeC-CEeeceeec
Q 029781 162 FVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.|.+++...+||+++ +...|++|.
T Consensus 81 ~~~~~~~~~~~V~~~~~~~~G~it~ 105 (111)
T cd04612 81 RMAERDIGRLPVVDDSGRLVGIVSR 105 (111)
T ss_pred HHHhCCCCeeeEEcCCCCEEEEEEH
Confidence 999999998999975 899999984
No 120
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.8e-11 Score=81.36 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=83.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---CcccccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---GSMRKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++..... ....++.++|..... +.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 80 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV 80 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence 567899999999999999888887777776 58999999999998765421 122346777766555 8889999999
Q ss_pred HHHHhccCceEEEEEeCCEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
++.|.+++...+||++++.+.|++|.
T Consensus 81 ~~~m~~~~~~~l~Vv~~~~~~Gvvt~ 106 (112)
T cd04625 81 RRLMVERHLRYLPVLDGGTLLGVISF 106 (112)
T ss_pred HHHHHHcCCCeeeEEECCEEEEEEEH
Confidence 99999999999999999999999985
No 121
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.33 E-value=3.7e-11 Score=80.24 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=83.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++..+.++.++.++++.|.+++...+||+|++|+++|+++..|++..... ..++.++|.+... +.+++.+.++.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---AKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---CCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 57789999999999999999999999999988999999999999875421 2345666765555 8999999999999
Q ss_pred HhccCceEEEEEe-CCEeeceeec
Q 029781 163 VGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
|.+++...+||++ ++.+.|++|.
T Consensus 80 ~~~~~~~~~~vv~~~g~~~Gvit~ 103 (109)
T cd04583 80 VLKRGPKYVPVVDEDGKLVGLITR 103 (109)
T ss_pred HHHcCCceeeEECCCCeEEEEEeh
Confidence 9998999999997 5789999985
No 122
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.33 E-value=1.5e-11 Score=102.17 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=86.4
Q ss_pred cccHHHHHHHHhcCcccCCceee-c---CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-L---PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM 79 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~---~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 79 (188)
-.++.++.++|.+++++++||+| + ++++ +|.+|++.. .....++.++|
T Consensus 96 ~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~--------------------------~~~~~~V~dvm 149 (450)
T TIGR01302 96 ETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV--------------------------KDKGKPVSEVM 149 (450)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh--------------------------hcCCCCHHHhh
Confidence 45889999999999999999999 5 6888 999998621 11245789999
Q ss_pred c-cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 80 T-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 80 ~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
. . ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus 150 ~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 150 TRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 8 5 7899999999999999999999999999999999999999999998754
No 123
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=3.9e-11 Score=80.62 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=84.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc---CcccccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS---GSMRKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++..... ....++.++|.+... +.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence 5778999999999999999999999999996 5999999999999754322 122345677766555 8899999999
Q ss_pred HHHHhccCceEEEEEeCCEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
++.|.+++...+||++++.+.|+++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~Gvi~~ 106 (112)
T cd04802 81 AKLMAKHGIKRLPVVDDDELVGIVTT 106 (112)
T ss_pred HHHHHHcCCCeeEEeeCCEEEEEEEh
Confidence 99999999988999988889999985
No 124
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=4.3e-12 Score=86.72 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+-.++.+|.+.|.+++++.+||+|+|+++ ++.+++.+....+..... .. .........++.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~- 75 (122)
T cd04637 8 MDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAG----ET-------EKDLATLNRRAHQIMTR- 75 (122)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhcccc----ch-------HHHHHHHHhHHHHhhcC-
Confidence 44688999999999999999999988888 999998732110000000 00 00000113468899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
++..+.+++++.++++.|.+++...+||+|++|+++|+++..|++++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 76 -DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 89999999999999999999999999999988999999999999853
No 125
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.32 E-value=2.8e-11 Score=82.38 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=84.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc-----------CcccccccccccCcc-cC
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS-----------GSMRKLGFNLYFGFN-SG 151 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~-----------~~~~~~~~~~~~~~~-~~ 151 (188)
++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++.+..... ....++.++|.+... +.
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence 567899999999999999999999999999889999999999998654311 112335566665555 88
Q ss_pred CcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 152 NAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 152 ~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+++++.++++.|.+.+...+||++++.+.|++|.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~ 115 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVEDGRLVGIITE 115 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEH
Confidence 9999999999999999988899988999999984
No 126
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.32 E-value=3.9e-11 Score=79.87 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=80.7
Q ss_pred eEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHHHh
Q 029781 86 HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKFVG 164 (188)
Q Consensus 86 ~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~ 164 (188)
.+++++.++.++++.|.+.+.+.+||+|+ |+++|+++..++.+... .++.+.|.+... +.++.++.++++.|.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 57899999999999999999999999997 99999999999986432 224556655555 899999999999999
Q ss_pred ccCceEEEEEeCCEeeceeec
Q 029781 165 GINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 165 ~~~~~~~~vv~~~~~~giit~ 185 (188)
+++...+||++++.+.|++|.
T Consensus 78 ~~~~~~~~Vv~~~~~iGvit~ 98 (104)
T cd04594 78 KNKTRWCPVVDDGKFKGIVTL 98 (104)
T ss_pred HcCcceEEEEECCEEEEEEEH
Confidence 999999999999999999984
No 127
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=2.3e-11 Score=81.89 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=86.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcc--cccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSM--RKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..++++.+...... .++.++|.+... +.++....+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 82 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEAL 82 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHH
Confidence 567789999999999999988889999999889999999999999876543322 347778876666 89999999999
Q ss_pred HHHhccCceEEEEEe-CCEeeceeec
Q 029781 161 KFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
++|..++...+||++ ++.+.|++|.
T Consensus 83 ~~~~~~~~~~~~Vv~~~~~~iG~it~ 108 (114)
T cd04604 83 ELMEENKITALPVVDDNGRPVGVLHI 108 (114)
T ss_pred HHHHHcCCCEEEEECCCCCEEEEEEH
Confidence 999999988889997 6889999985
No 128
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.6e-11 Score=82.62 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=84.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------------cccccccccccCcc-c
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------------SMRKLGFNLYFGFN-S 150 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------~~~~~~~~~~~~~~-~ 150 (188)
++..+.+++++.++.+.|.+++.+.+||+|+ |+++|+++..++++...... ....+.++|..... +
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 5778999999999999999999999999996 99999999999987544221 12235566655555 8
Q ss_pred CCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
.+++++.+++++|.+.+...+||++++.+.|++|.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~ 115 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTR 115 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEH
Confidence 99999999999999999998899988999999985
No 129
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.31 E-value=3.4e-12 Score=106.06 Aligned_cols=134 Identities=10% Similarity=0.032 Sum_probs=99.9
Q ss_pred cccHHHHHHHHhc-----CcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccc
Q 029781 6 IPSCLTLARLNAN-----GVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGD 77 (188)
Q Consensus 6 ~~sv~~a~~~m~~-----~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 77 (188)
-.++.+|.+.|.+ ++...+||+| +++++ ++.+|++. ...+.++++
T Consensus 147 ~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~---------------------------a~~~~~v~~ 199 (449)
T TIGR00400 147 DYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL---------------------------AKPEEILSS 199 (449)
T ss_pred CCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc---------------------------CCCCCcHHH
Confidence 3588999999975 4556788888 78888 99999872 112347999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchH
Q 029781 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFA 156 (188)
Q Consensus 78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (188)
+|.+ ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++...... .+++|..... ..+++..
T Consensus 200 im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----~ed~~~~~gv~~~~~~~l 273 (449)
T TIGR00400 200 IMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----TEDFYMIAAVKPLDDSYF 273 (449)
T ss_pred HhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----HHHHHHhcCCCCCcchhh
Confidence 9998 8899999999999999999999999999999999999999999998775432 1344443332 2234555
Q ss_pred HHHHHHHhccCceEEE
Q 029781 157 RWLLKFVGGINCGFLL 172 (188)
Q Consensus 157 ~~v~~~l~~~~~~~~~ 172 (188)
......+.+++...++
T Consensus 274 ~~~~~~~~~~R~~wL~ 289 (449)
T TIGR00400 274 DTSILVMAKNRIIWLL 289 (449)
T ss_pred hchHHHHHHhccchHH
Confidence 5555555555554433
No 130
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=6.3e-12 Score=86.71 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 4 ISIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 4 ~~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.+-.++.+|.++|.+.+.+.+||+| +|+++ +|.+|+...... . ....... . ...........++.++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~---~---~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04632 7 REDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVR---D---RDKARTG-D-RSGEKERMLDLPVYDAMS 78 (128)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhh---h---hhhcchh-h-hhhhhhhhccCcHHHHhc
Confidence 3456899999999999999999999 78888 999998732100 0 0000000 0 000001122456889998
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEc--CCCcEEEEEehHHHhh
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVID--DDWKLVGVVSDYDLLA 129 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd--~~~~~~Giit~~dl~~ 129 (188)
+ ++.+++++.++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 79 ~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 79 S--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred C--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 8 889999999999999999999999999984 4689999999999875
No 131
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.30 E-value=2.3e-11 Score=101.08 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=95.0
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHh-----cCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVE-----KRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFN 143 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-----~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~ 143 (188)
.....+++++|++ ++.++++++++.++++.|.+ ++...++|+|++++++|+++.+|++... ....++++
T Consensus 127 ~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----~~~~v~~i 200 (449)
T TIGR00400 127 SYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----PEEILSSI 200 (449)
T ss_pred CCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----CCCcHHHH
Confidence 3456789999998 99999999999999999985 4556789999889999999999998642 23457888
Q ss_pred cccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
|.+.+. +.++++..++.+.|.+++...+||+| ++.+.|+||.
T Consensus 201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~ 244 (449)
T TIGR00400 201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTV 244 (449)
T ss_pred hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEH
Confidence 888766 89999999999999999999999997 5899999984
No 132
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.30 E-value=9.6e-12 Score=83.16 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=80.2
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-+++.++.+.|.+++++.+||+++++++ ++.+|+.+.... .......++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~---------------------~~~~~~~~~~~~~~~- 65 (110)
T cd04609 8 PDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIE---------------------GKAKFSLPVREVMGE- 65 (110)
T ss_pred CCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhc---------------------cccccCcCHHHHhcC-
Confidence 34588999999999999999999988888 999998742100 011113568889987
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
++.++++++++.++.+.|.+ . ..+||++++|+++|++|.+|++++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred -CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 88899999999999999988 3 347888888999999999999763
No 133
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.7e-11 Score=81.96 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=83.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc----C-------cccccccccccCcc-cC
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS----G-------SMRKLGFNLYFGFN-SG 151 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~----~-------~~~~~~~~~~~~~~-~~ 151 (188)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++..... . ....+.+++...+. +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 678899999999999999999999999999889999999999998642110 0 12234556655445 88
Q ss_pred CcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 152 NAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 152 ~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+++.+.++++.|.+++...+||+++ +.+.|++|.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~ 116 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDR 116 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEh
Confidence 8999999999999999988899875 799999984
No 134
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.29 E-value=4.9e-11 Score=79.75 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=80.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
....+.++.++.++.+.+.+.+...+||+|+ +|+++|+++.+|+.+.... +|.+.+. +.+++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------hccCCCceECCCCcHHHH
Confidence 5678899999999999999998899999997 6899999999999876532 4544444 8889999999
Q ss_pred HHHHhccCceEEEEEeCCEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
.+.|.+++...+||++++.+.|++|.
T Consensus 74 ~~~~~~~~~~~~pVv~~~~~~Gvvt~ 99 (105)
T cd04591 74 HQLFRKLGLRHLLVVDEGRLVGIITR 99 (105)
T ss_pred HHHHHHcCCCEEEEEECCeEEEEEEh
Confidence 99999999999999999999999985
No 135
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.29 E-value=4.2e-11 Score=81.40 Aligned_cols=101 Identities=23% Similarity=0.174 Sum_probs=84.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc------------ccccccccccCcc-c
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS------------MRKLGFNLYFGFN-S 150 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~------------~~~~~~~~~~~~~-~ 150 (188)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++++....... ..++.++|.+... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 5778999999999999999999999999997 999999999999976543210 1235566665555 8
Q ss_pred CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.+++++.++.+.|.+.+...+||+++ +.+.|++|.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITE 116 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEH
Confidence 99999999999999999998999986 899999985
No 136
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.29 E-value=4e-11 Score=80.61 Aligned_cols=101 Identities=21% Similarity=0.144 Sum_probs=82.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cc-cccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SM-RKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
++.++.++.++.++++.|.+++.+.+||+++ |+++|+++..|++......+ .. .++.++|.+... +.+++.+.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~ 80 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA 80 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence 5778999999999999999999999999997 99999999999984332111 11 346677766555 8999999999
Q ss_pred HHHHhccCceEEEEEeC-CEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
++.|.+++...+||+++ +.+.|++|.
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~ 107 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDV 107 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEH
Confidence 99999999988899975 889999985
No 137
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=1.3e-11 Score=83.03 Aligned_cols=102 Identities=23% Similarity=0.345 Sum_probs=82.6
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-.++.++.+.|.+++.+.+||+|+++++ ++.+|+.+.... ........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~--------------------~~~~~~~~~~~~~~~~- 66 (112)
T cd04802 8 PDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVS--------------------RNLKPREVPVGEVMST- 66 (112)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhh--------------------ccCCcccCCHHHhcCC-
Confidence 34578999999999999999999966878 999998732100 0011234578899988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 67 -PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 88999999999999999999999999999864 9999999999874
No 138
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.29 E-value=1.6e-11 Score=83.61 Aligned_cols=110 Identities=25% Similarity=0.259 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-.++.+|.+.|.+.+++.+||+| +++++ ++..++.+.......... ... .......++.++|.+
T Consensus 8 ~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------~~~-~~~~~~~~v~~~~~~ 75 (121)
T cd04584 8 PTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------EHE-LYLLLKMPVKEIMTK 75 (121)
T ss_pred CCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------hhh-hhhhcCcCHHHHhhC
Confidence 346889999999999999999999 78988 999997732110000000 000 001234578899988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++...+||+++ |+++|+++.+|+++
T Consensus 76 --~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 --DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred --CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 8899999999999999999999999999986 89999999999975
No 139
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=2.8e-11 Score=101.28 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=91.3
Q ss_pred ccccccccC-CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCccccccccccc--C
Q 029781 74 TVGDFMTKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYF--G 147 (188)
Q Consensus 74 ~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~--~ 147 (188)
+++++|... .++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+.... .....++.++|.+ .
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~~~~~~V~dIMt~~~~ 172 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--MSLDTKVKDFMTPFEK 172 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--cCCCCCHHHHhCCCCC
Confidence 467777521 14579999999999999999999999999996 58999999999997432 2344568889985 4
Q ss_pred cc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 148 FN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 148 ~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
+. +.++.++.+++++|.++++..+||++ ++.+.|+||.
T Consensus 173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~ 212 (502)
T PRK07107 173 LVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFR 212 (502)
T ss_pred eEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEh
Confidence 44 89999999999999999999999998 4899999985
No 140
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=78.77 Aligned_cols=105 Identities=26% Similarity=0.266 Sum_probs=90.2
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-ccccccccCcc-cCCcch
Q 029781 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-KLGFNLYFGFN-SGNAYF 155 (188)
Q Consensus 78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 155 (188)
+|.+ ++.++.++.++.++...|.++++..+||++. ++++|++|.+|+.++........ ++.++|..... +.++.+
T Consensus 4 ~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 80 (117)
T COG0517 4 IMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDTP 80 (117)
T ss_pred cccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCCC
Confidence 3445 8899999999999999999999999999984 48999999999999887655444 46777875444 889999
Q ss_pred HHHHHHHHhc-cCceEEEEEeCC--Eeeceeec
Q 029781 156 ARWLLKFVGG-INCGFLLTVEGA--MTANIISS 185 (188)
Q Consensus 156 ~~~v~~~l~~-~~~~~~~vv~~~--~~~giit~ 185 (188)
..++.+.|.+ ++...+||++++ .+.|++|.
T Consensus 81 ~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~ 113 (117)
T COG0517 81 LEEALELMVERHKIRRLPVVDDDGGKLVGIITL 113 (117)
T ss_pred HHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEH
Confidence 9999999999 799999999875 89999986
No 141
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.6e-11 Score=83.47 Aligned_cols=101 Identities=23% Similarity=0.195 Sum_probs=83.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC----------------------------
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG---------------------------- 135 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~---------------------------- 135 (188)
++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..|+++.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 6788999999999999999999999999997 99999999999987654222
Q ss_pred ------cccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 136 ------SMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 136 ------~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
...++.++|.+... +.+++...++.+.|.+.+...+||++++...|+++.
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~ 137 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTR 137 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence 11234455655555 888899999999999999988899988999999984
No 142
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.27 E-value=1.3e-11 Score=105.63 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=86.2
Q ss_pred ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC
Q 029781 7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE 83 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 83 (188)
+++.++.+.|.+++.+.+||+| +++++ ++.+|+.+... ......+.++.|+|.+
T Consensus 464 ~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~---------------------~~~~~~~~~v~dim~~-- 520 (574)
T PRK01862 464 ASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL---------------------DKRDTTDKTAADYAHT-- 520 (574)
T ss_pred CCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh---------------------cccccccchHHHhccC--
Confidence 4789999999999999999999 78888 99999873110 0112224578999998
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC--CcEEEEEehHHHhhchh
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDD--WKLVGVVSDYDLLALDS 132 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dl~~~~~ 132 (188)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+++...
T Consensus 521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 88999999999999999999999999999876 47999999999998753
No 143
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.27 E-value=5e-11 Score=99.37 Aligned_cols=112 Identities=21% Similarity=0.171 Sum_probs=93.3
Q ss_pred CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC--cccccccccccC
Q 029781 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG--SMRKLGFNLYFG 147 (188)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~~~ 147 (188)
....+++++|.+ ++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+++.+.... ...++.++|.+.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~ 409 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKK 409 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCC
Confidence 456789999998 8999999999999999999999999999998889999999999997554322 234577788776
Q ss_pred cc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 148 FN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 148 ~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+. +.+++++.++.++|.+++ ..+|++++.+.|+||.
T Consensus 410 ~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~ 446 (454)
T TIGR01137 410 FIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTK 446 (454)
T ss_pred CeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEH
Confidence 65 899999999999998754 4566678999999985
No 144
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=8e-11 Score=79.53 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=80.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-cCCc--chHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-SGNA--YFAR 157 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~-~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~~~~--~~~~ 157 (188)
++.++.++.++.++++.|.+++ ...+||+| +|+++|+++..|+++....... ..++.++|..... +.++ +.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 5678999999999999998888 66777777 5899999999999976543222 2345667765555 6655 6788
Q ss_pred HHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 158 WLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 158 ~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
++++.|.+++...+||+++ +.+.|++|.
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~ 109 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTA 109 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEh
Confidence 9999999999999999975 889999985
No 145
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=2.7e-11 Score=80.75 Aligned_cols=94 Identities=28% Similarity=0.310 Sum_probs=79.4
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-.++.++.+.|.+.+++.+||++ +++++ ++.+++... ....++.++|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~---------------------------~~~~~~~~~~~~- 60 (106)
T cd04638 9 PGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN---------------------------PEEEQLALLMTR- 60 (106)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc---------------------------cccchHHHHhcC-
Confidence 45888999999998999999999 68888 898887621 112356788887
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 61 -DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 8889999999999999999999999999984 79999999999875
No 146
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-11 Score=102.05 Aligned_cols=104 Identities=25% Similarity=0.256 Sum_probs=90.8
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
...++.+|++.|.+.|.+++.+++ ++.+. +|++|+.++.. ........+|+++|+.
T Consensus 164 ~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~---------------------~~g~~~~~~V~evmT~ 222 (610)
T COG2905 164 PQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVI---------------------ADGRSKTQKVSEVMTS 222 (610)
T ss_pred ccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHH---------------------hcCCCcccchhhhhcc
Confidence 356889999999999999999998 88888 99999885321 1245567899999999
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
+++++..++.+.+|+-.|.+++++++||++ +|+++|++|..||+++..
T Consensus 223 --p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 223 --PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred --CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 999999999999999999999999999997 699999999999998664
No 147
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.26 E-value=2.6e-11 Score=80.74 Aligned_cols=102 Identities=31% Similarity=0.399 Sum_probs=82.9
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
+-.++.++.+.|.+++...+||++ +++++ ++.+++.+.... ........+.++|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~ 66 (113)
T cd02205 8 PDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE---------------------GGLDPLVTVGDVMTR 66 (113)
T ss_pred CCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh---------------------ccCCccccHHHHhcC
Confidence 456899999999999999999999 68888 898998742110 011111126778887
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 67 --DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 8899999999999999999999999999998899999999999875
No 148
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.26 E-value=2.9e-11 Score=94.57 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=100.0
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGF 148 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~ 148 (188)
..+-..|+|+|.|.++..++.+++++++-.++..+.+.+++||+|+..+++|++|.+|+.... ...+++-.|...+
T Consensus 184 KkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----~~t~ieKVMtknp 259 (432)
T COG4109 184 KKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----PSTTIEKVMTKNP 259 (432)
T ss_pred hhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----CCccHHHHhccCC
Confidence 344578999999877889999999999999999999999999999999999999999998654 3455677888755
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeecc
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISSF 186 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~~ 186 (188)
. +.+.++...+.++|--.++..+||+++ ..+.|+||++
T Consensus 260 ~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~ 299 (432)
T COG4109 260 ITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQ 299 (432)
T ss_pred eeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHH
Confidence 5 999999999999999999999999985 6899999974
No 149
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.6e-11 Score=80.78 Aligned_cols=101 Identities=20% Similarity=0.094 Sum_probs=82.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccC------------cccccccccccCcc-c
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG------------SMRKLGFNLYFGFN-S 150 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~------------~~~~~~~~~~~~~~-~ 150 (188)
++.++.++.++.++.+.|.+++++.+||+|+ |+++|+++..++++.+.... ....+.++|...+. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 5778999999999999999999999999996 89999999999987543210 11235566665555 8
Q ss_pred CCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.+++...++++.|.+++...+||+++ +.+.|++|.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~ 116 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITW 116 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEH
Confidence 88999999999999999998899975 899999984
No 150
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.25 E-value=8.7e-11 Score=78.53 Aligned_cols=99 Identities=27% Similarity=0.253 Sum_probs=81.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCC-cchHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGN-AYFARWLLK 161 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~v~~ 161 (188)
++..+..+.++.++.+.|.+++.+.+||+|++|+++|+++.++++.... ...++.++|..... +.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 6788999999999999999999999999998899999999999975432 22345667754333 555 899999999
Q ss_pred HHhccCceEEEEEe-CCEeeceeec
Q 029781 162 FVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.|.+.+...+||++ ++.+.|++|.
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~ 104 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITV 104 (110)
T ss_pred HHHHhCCCeeeEEcCCCCEEEEEEh
Confidence 99999999889997 4889999985
No 151
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.25 E-value=6.9e-11 Score=82.57 Aligned_cols=94 Identities=19% Similarity=0.129 Sum_probs=76.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccc-c------------ccccc------
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR-K------------LGFNL------ 144 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~-~------------~~~~~------ 144 (188)
++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++++....+... . +.+++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 6789999999999999999999999999998899999999999998665333211 0 12233
Q ss_pred ---ccCcc-cCCcchHHHHHHHHhccCceEEEEEeCC
Q 029781 145 ---YFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGA 177 (188)
Q Consensus 145 ---~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~ 177 (188)
...+. +.+++.+.++++.|.+++...+||++++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 23344 9999999999999999999999999754
No 152
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.24 E-value=3.7e-11 Score=81.22 Aligned_cols=100 Identities=31% Similarity=0.386 Sum_probs=83.6
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
.-.++.+|...|.++++..+||++.++++ +|.+|+.+.... ......++.++|..
T Consensus 14 ~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~----------------------~~~~~~~v~~v~~~- 70 (117)
T COG0517 14 PDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAA----------------------GGKRLLPVKEVMTK- 70 (117)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhc----------------------cCCccccHHHhccC-
Confidence 45688999999999999999999876777 999999843210 11111168999998
Q ss_pred CCeeEEcCCCCHHHHHHHHHh-cCCCeEEEEcCCC-cEEEEEehHHHh
Q 029781 83 EDLHAVKTTTTVDEALERLVE-KRITGFPVIDDDW-KLVGVVSDYDLL 128 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~-~~~~~~pVvd~~~-~~~Giit~~dl~ 128 (188)
++.++.++.++.++.+.|.+ ++.+.+||+++++ +++|++|..|++
T Consensus 71 -~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 71 -PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 89999999999999999999 7999999999875 999999999974
No 153
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.24 E-value=1.5e-10 Score=77.36 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=78.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCc--ccccccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGS--MRKLGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.++.+++++.++.+.|.+++.+.+||+|+ |+++|+++..|+.+....... ...+.+++.+... +.+++.+.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 5678999999999999999999999999997 999999999999986543322 2345666765555 88888888999
Q ss_pred HHHhccCceEEEEEe-CCEeeceeec
Q 029781 161 KFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
++|.+ ... +||++ ++.+.|++|.
T Consensus 81 ~~~~~-~~~-~~vv~~~~~~~Gvvt~ 104 (110)
T cd04609 81 ELLDR-GNV-AVVVDEGGKFVGIITR 104 (110)
T ss_pred HHHHh-CCc-eeEEecCCeEEEEEeH
Confidence 98887 444 45554 5899999985
No 154
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=3.9e-11 Score=84.63 Aligned_cols=121 Identities=23% Similarity=0.280 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHhcCcccCCceeecCceE--ecCCccccccccccc------chhhhhhhccCCCCCCCC------CCCC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQLPITV--ATPSHLSKRLRFFTV------SREVKAFAHNGVGITNSV------PPRN 70 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~~~l~--vt~~dl~~~~~~~~~------~~~~~~~~~~~~~~~~~~------~~~~ 70 (188)
+-.++.++++.|.+++++.+||+|+++++ ++.+|+.+....... ++....+.... ...... ....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (143)
T cd04634 8 ADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPL-REFINWEETKRALTDA 86 (143)
T ss_pred CCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccc-hheeehHHHHHHHHHH
Confidence 45689999999999999999999988888 999998742210000 00000000000 000000 0001
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
...++.++|.. ++.++.+++++.+++..|.+++.+.+||+++ |+++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 24568889988 8999999999999999999999999999987 89999999999874
No 155
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.1e-11 Score=91.94 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=102.9
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN 149 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (188)
.++.++|+|.|+....+++.+.++.+.+..+.+..++++||+.+ .+.+.|++..+||++++........+.+++.|.+.
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPav~ 144 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPAVV 144 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhccccee
Confidence 46789999999888899999999999999999999999999965 35799999999999987665555567888999999
Q ss_pred cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 150 SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
++....+...++-+..+..+.+.|+|+ |...|+||.
T Consensus 145 VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTI 181 (293)
T COG4535 145 VPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTI 181 (293)
T ss_pred cccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEH
Confidence 999999999999999999999999987 899999984
No 156
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.23 E-value=1e-10 Score=97.24 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=92.9
Q ss_pred cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhhchhccCcccccccccc--cC
Q 029781 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGSMRKLGFNLY--FG 147 (188)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~~~~~~~~~~~~~~~~~--~~ 147 (188)
.+.++.|.+ ++.++.++.++.++++.|.+++++++||+|++ ++++|+||.+|++.... ...++.++|. +.
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---KGKPVSEVMTREEV 154 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---CCCCHHHhhCCCCC
Confidence 456778888 89999999999999999999999999999987 69999999999975432 3445788887 44
Q ss_pred cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
..+.++.++.++++.|.+++.+.+||+++ +.+.|+||.
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~ 193 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITM 193 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEh
Confidence 44999999999999999999999999975 899999985
No 157
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=2.1e-10 Score=77.05 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=82.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh-chhccC-cc-cccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA-LDSISG-SM-RKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~-~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
++.++.+++++.++.+.|.+++.+.+||+|+ |+++|+++..+++. ...... .. .++.++|..... +.+++.+.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence 5788999999999999999999999999997 99999999999873 222111 12 236677765555 8999999999
Q ss_pred HHHHhccCceEEEEEeC-CEeeceeec
Q 029781 160 LKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
.+.|...+...+||+++ +.+.|++|.
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~ 107 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSL 107 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEH
Confidence 99999999988899975 899999985
No 158
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.22 E-value=1.3e-10 Score=78.51 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=81.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cC--CcchHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SG--NAYFAR 157 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~ 157 (188)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+++..|++.... ....+.++|.+... +. +++.+.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~---~~~~v~~~~~~~~~~~~~~~~~~l~ 79 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD---SETPLSEVMTPREVLVVAPTGITLE 79 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc---cCCCHHHhcCCCceEEECCCCCCHH
Confidence 5678899999999999999889899999996 689999999999975332 12336677765443 54 488899
Q ss_pred HHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 158 WLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 158 ~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
++++.|.+++...+||++ ++.+.|++|.
T Consensus 80 ~~l~~~~~~~~~~~pVv~~~~~~~Gvit~ 108 (114)
T cd04602 80 EANEILRESKKGKLPIVNDDGELVALVTR 108 (114)
T ss_pred HHHHHHHhcCCCceeEECCCCeEEEEEEH
Confidence 999999999999999997 5899999985
No 159
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.22 E-value=2.7e-10 Score=75.74 Aligned_cols=102 Identities=26% Similarity=0.291 Sum_probs=83.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc--cccccccCcc-cCCcchHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK--LGFNLYFGFN-SGNAYFARWLL 160 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~v~ 160 (188)
++.+++.+.++.++.+.|.+++...+||++++++++|+++..++++.......... +.+.+..... +.++..+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA 81 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHH
Confidence 56788999999999999999999999999988999999999999976643322111 3345554444 88899999999
Q ss_pred HHHhccCceEEEEEeC-CEeeceeec
Q 029781 161 KFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 161 ~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+.|.+.+...++|+++ +...|+++.
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~i~~ 107 (113)
T cd02205 82 ELMLEHGIRRLPVVDDEGRLVGIVTR 107 (113)
T ss_pred HHHHHcCCCEEEEEcCCCcEEEEEEH
Confidence 9999998999999976 899999985
No 160
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.22 E-value=4.1e-11 Score=93.21 Aligned_cols=94 Identities=27% Similarity=0.202 Sum_probs=80.0
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-+++.++++.|.+.+++.+||+| +|+++ ++.+|+.+... .......++.++|.+
T Consensus 172 ~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~----------------------~~~~~~~~v~~im~~- 228 (268)
T TIGR00393 172 TTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL----------------------GGGSLKSEVRDFMTL- 228 (268)
T ss_pred CCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh----------------------cCCcccCcHHHhCCC-
Confidence 45789999999999999999999 88999 99999873210 012234679999988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEe
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit 123 (188)
++.++.+++++.++++.|.+++...+||+|++|+++|+|+
T Consensus 229 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 229 -GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 8899999999999999999999999999998899999985
No 161
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.21 E-value=4.3e-11 Score=80.02 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=77.0
Q ss_pred ccccHHHHHHHHhcCcccCCceeec----CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQL----PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF 78 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd~----~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 78 (188)
.-.++.++.+.|.+.++..+||+++ |+++ ++.+++.+.. . . +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~------------------------~---~-----~ 56 (105)
T cd04591 9 EGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL------------------------K---N-----Y 56 (105)
T ss_pred ccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH------------------------H---H-----h
Confidence 3467889999999999999999985 6788 9998876210 0 0 7
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
|.+ ++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++++
T Consensus 57 m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 57 IDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred ccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 887 888999999999999999999999999996 6899999999999753
No 162
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=4.1e-10 Score=74.98 Aligned_cols=98 Identities=21% Similarity=0.228 Sum_probs=81.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
+..++..+.++.+++..|.+.+.+.+||++++++++|+++..+++.... ...+.++|..... +.+++...++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 4678889999999999999989999999998899999999999985421 1224455554444 7888999999999
Q ss_pred HhccCceEEEEEeCCEeeceeec
Q 029781 163 VGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~~~~~~giit~ 185 (188)
|.+.+...+||++++.+.|++|.
T Consensus 78 ~~~~~~~~~~Vvd~~~~~G~it~ 100 (106)
T cd04638 78 MVENNIRRVPVVDDGKLVGIVTV 100 (106)
T ss_pred HHHcCCCEEEEEECCEEEEEEEH
Confidence 99999999999998899999984
No 163
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=1.8e-10 Score=77.20 Aligned_cols=94 Identities=26% Similarity=0.176 Sum_probs=77.4
Q ss_pred EcCCCCHHHHHHHHHhcC-----CCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHH
Q 029781 88 VKTTTTVDEALERLVEKR-----ITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLK 161 (188)
Q Consensus 88 v~~~~~l~~~~~~m~~~~-----~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 161 (188)
+.+++++.++++.|.+++ ...+||+|++|+++|+++.+++++.. ....+.+++.+... +.+++...++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD----PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC----CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 567889999999998777 46899999889999999999998632 22346667766555 888999999999
Q ss_pred HHhccCceEEEEEe-CCEeeceeec
Q 029781 162 FVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 162 ~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.|..++...+||++ ++...|++|.
T Consensus 78 ~~~~~~~~~~~Vv~~~~~~~Gvit~ 102 (109)
T cd04606 78 LFEKYDLLALPVVDEEGRLVGIITV 102 (109)
T ss_pred HHHHcCCceeeeECCCCcEEEEEEh
Confidence 99999998889997 5889999985
No 164
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.20 E-value=4.1e-11 Score=94.25 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=83.5
Q ss_pred cccHHHHHHHHhcCcccCCceee-c-CceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-L-PITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~-~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
-.++.++.+.+.+++++++||++ + ++++ ++.+|++... ........+.++|.+
T Consensus 85 ~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~-----------------------~~~~~~~~l~~l~r~ 141 (292)
T PRK15094 85 NQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM-----------------------RSDAEAFSMDKVLRQ 141 (292)
T ss_pred CCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh-----------------------hccCCcCCHHHHcCC
Confidence 46788999999999999999998 4 6788 9999987211 001112357889976
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
+.++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+.
T Consensus 142 ---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~iv 189 (292)
T PRK15094 142 ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 189 (292)
T ss_pred ---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHh
Confidence 558999999999999999999999999999899999999999998654
No 165
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=3.4e-10 Score=75.28 Aligned_cols=97 Identities=24% Similarity=0.245 Sum_probs=81.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
++.+++.+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... ....+.++|.+... +.+++.+.++++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 6788999999999999999888889999996 9999999999998642 12345667765555 8899999999999
Q ss_pred HhccCceEEEEEe-CCEeeceeec
Q 029781 163 VGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
|.+++...+||++ ++.+.|+++.
T Consensus 78 ~~~~~~~~~~Vv~~~g~~~Gvi~~ 101 (107)
T cd04610 78 MFRTGISKLPVVDENNNLVGIITN 101 (107)
T ss_pred HHHhCCCeEeEECCCCeEEEEEEH
Confidence 9998988889987 4789999974
No 166
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.19 E-value=1.8e-10 Score=96.62 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=89.0
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccC--cc-cC
Q 029781 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFG--FN-SG 151 (188)
Q Consensus 78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~--~~-~~ 151 (188)
.|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+.... +...++.++|.+. .. +.
T Consensus 105 gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~~~~~V~eIMt~~~~lvtv~ 179 (505)
T PLN02274 105 GFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---DRETKLSEVMTSDDDLVTAP 179 (505)
T ss_pred cccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---ccCCcHHHHhccCCCcEEEC
Confidence 3667 8999999999999999999999999999986 37999999999997543 3345678888754 44 89
Q ss_pred CcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 152 NAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 152 ~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
+++.+.+++++|.+++...+||++ ++.+.|+||.
T Consensus 180 ~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr 214 (505)
T PLN02274 180 AGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTR 214 (505)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence 999999999999999999999997 6899999985
No 167
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.19 E-value=2e-10 Score=95.64 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=92.8
Q ss_pred CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-c
Q 029781 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-S 150 (188)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~ 150 (188)
..++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|+ ++++|+||.+|+.... ...++.++|.+.+. +
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~~----~~~~V~dIMt~~litv 159 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGVD----RFTQVRDIMSTDLVTA 159 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcCC----CCCCHHHHccCCceEe
Confidence 5667788988 8999999999999999999999999999984 7999999999986432 22457888887766 9
Q ss_pred CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.+++++.+++++|.+++...+||++ ++.+.|+||.
T Consensus 160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~ 195 (475)
T TIGR01303 160 PADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTR 195 (475)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEH
Confidence 9999999999999999999999997 6899999985
No 168
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.19 E-value=1.9e-10 Score=96.57 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=92.6
Q ss_pred cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccc--cCccc
Q 029781 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLY--FGFNS 150 (188)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~--~~~~~ 150 (188)
..++++|.+ ++.++.++.++.++++.|.+++++.+||+|++++++|+||.+|+..... ...++.++|. +.+.+
T Consensus 87 k~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---~~~~V~dim~~~~~v~v 161 (486)
T PRK05567 87 KRSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---LSQPVSEVMTKERLVTV 161 (486)
T ss_pred hhhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---CCCcHHHHcCCCCCEEE
Confidence 356788988 9999999999999999999999999999998899999999999975432 2345677885 34449
Q ss_pred CCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 151 GNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.++.++.++++.|.+++...+||++ ++.+.|++|.
T Consensus 162 ~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~ 197 (486)
T PRK05567 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITV 197 (486)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh
Confidence 9999999999999999999999997 5899999974
No 169
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.17 E-value=3e-10 Score=95.24 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=90.7
Q ss_pred ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEehHHHhhchhccCccccccccccc--Cc
Q 029781 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD---WKLVGVVSDYDLLALDSISGSMRKLGFNLYF--GF 148 (188)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~--~~ 148 (188)
..++.|.. ++.++.+++++.++++.|.+++++.+||+|++ ++++|++|.+|+.... ....++.++|.+ .+
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~~~~~V~diMt~~~~l 171 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---DKSTPVSEVMTPREKL 171 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---cCCCCHHHhhCCcCCc
Confidence 45567777 88999999999999999999999999999863 7999999999997432 234457888875 44
Q ss_pred c-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 149 N-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 149 ~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
. +.++..+.++.++|.+++...+||++ ++.+.|+||.
T Consensus 172 vtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~ 210 (495)
T PTZ00314 172 VVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSR 210 (495)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEe
Confidence 4 88999999999999999999999997 4789999985
No 170
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=4.6e-10 Score=76.16 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=79.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCeEEEEcCCCcEEEEEehHHHhhchhcc-----CcccccccccccCcc-cCCcchH
Q 029781 84 DLHAVKTTTTVDEALERLVEKR-ITGFPVIDDDWKLVGVVSDYDLLALDSIS-----GSMRKLGFNLYFGFN-SGNAYFA 156 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~-~~~~pVvd~~~~~~Giit~~dl~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~ 156 (188)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..+++++.... .....+.++|.+... +.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 5678899999999999998876 889999998 9999999999998654321 122346777876665 8889999
Q ss_pred HHHHHHHhccCce----EEEEEeCCEeeceeec
Q 029781 157 RWLLKFVGGINCG----FLLTVEGAMTANIISS 185 (188)
Q Consensus 157 ~~v~~~l~~~~~~----~~~vv~~~~~~giit~ 185 (188)
.++++.|.+++.+ ..++.+++...|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~ 113 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTV 113 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEH
Confidence 9999999887753 2344467899999984
No 171
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=1.1e-10 Score=79.22 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=80.6
Q ss_pred ccccHHHHHHHHhcCc-ccCCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 5 SIPSCLTLARLNANGV-INSVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~-~~~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
.-+++.++++.|.+.+ ++.+||+|+|+++ ++.+++...... . + ........++.++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~---~-----~----------~~~~~~~~~v~~~~~~ 69 (119)
T cd04598 8 PDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLST---P-----Y----------GRALYGKKPVSEVMDP 69 (119)
T ss_pred CCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhc---h-----h----------hHHHHcCCcHHHhcCC
Confidence 4567899999998877 8899999888888 998887631100 0 0 0001124578999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCC---eEEEEcCCCcEEEEEehHHHhh
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRIT---GFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~---~~pVvd~~~~~~Giit~~dl~~ 129 (188)
++..+.+++++.++++.|.+++.. ..||++++|+++|+||..|+++
T Consensus 70 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 70 --DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred --CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 899999999999999999988753 4468887899999999999874
No 172
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.14 E-value=1.3e-10 Score=95.39 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=97.9
Q ss_pred cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
-+++.++.+.+.+++++++||++ .++++ ++.+|++... . ....++.++|++
T Consensus 209 ~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~------------------------~-~~~~~l~~~~~~ 263 (408)
T TIGR03520 209 ETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL------------------------N-KKNFDWQSLLRE 263 (408)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh------------------------c-cCCCCHHHHcCC
Confidence 36789999999999999999998 35788 9999987211 0 123457888864
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh-ccCcc-cccccccc---cCcc-cCCcch
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS-ISGSM-RKLGFNLY---FGFN-SGNAYF 155 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~-~~~~~-~~~~~~~~---~~~~-~~~~~~ 155 (188)
+.++++++++.++++.|++++.+..+|+|+.|..+|+||..|+++.+. +.... ...++.+. +..+ ++...+
T Consensus 264 ---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~ 340 (408)
T TIGR03520 264 ---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTS 340 (408)
T ss_pred ---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccC
Confidence 789999999999999999999999999999899999999999998663 21111 11111121 2223 666788
Q ss_pred HHHHHHHHh
Q 029781 156 ARWLLKFVG 164 (188)
Q Consensus 156 ~~~v~~~l~ 164 (188)
+.++.+.+.
T Consensus 341 l~~l~~~l~ 349 (408)
T TIGR03520 341 LKDFYKILK 349 (408)
T ss_pred HHHHHHHhC
Confidence 888877765
No 173
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.08 E-value=1e-10 Score=99.69 Aligned_cols=112 Identities=23% Similarity=0.283 Sum_probs=83.9
Q ss_pred Ccccccccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc--------------Cc
Q 029781 72 TYTVGDFMT-KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS--------------GS 136 (188)
Q Consensus 72 ~~~v~~im~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--------------~~ 136 (188)
..+++++|+ + ++.++++++++.++.+.|.+++.+.+||+|++|+++|++|.+|+++..... +.
T Consensus 245 ~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~ 322 (546)
T PRK14869 245 SIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGI 322 (546)
T ss_pred CCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccch
Confidence 567889999 7 899999999999999999999999999999999999999999999744310 00
Q ss_pred ----------ccccccccccCcc----cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 137 ----------MRKLGFNLYFGFN----SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 137 ----------~~~~~~~~~~~~~----~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
..+.++++...++ .+.......+.+++.+.++...+++....+.||++.
T Consensus 323 ~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~ll~gIlsD 385 (546)
T PRK14869 323 EEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGLLLAAILSD 385 (546)
T ss_pred hhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 0012233332211 233556667888888888888887777778888764
No 174
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.07 E-value=4.7e-10 Score=88.60 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=99.4
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHhhchhccCcccc--cccccc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLLALDSISGSMRK--LGFNLY 145 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~--~~~~~~ 145 (188)
+...++|.|+|.++.+...+..+++.+++++.+.+..+.++|+..++ +.++|+++.+|+++++.+...... +.....
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~ 275 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAAD 275 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhc
Confidence 45678999999999899999999999999999999999999999543 569999999999999877664222 233346
Q ss_pred cCcccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781 146 FGFNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS 184 (188)
Q Consensus 146 ~~~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit 184 (188)
++.+++..+++.+-+..+.+++.++..|||| |.+.|+||
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVT 315 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVT 315 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeee
Confidence 7777999999999999999999999999987 89999987
No 175
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.04 E-value=1.7e-09 Score=87.87 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=120.4
Q ss_pred cccccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781 4 ISIPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM 79 (188)
Q Consensus 4 ~~~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 79 (188)
..-.++.++...+.++++.++||.| .+++. +|.+.+++....+...... ......++.|.-
T Consensus 168 ~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~---------------~~~l~~s~~dl~ 232 (381)
T KOG1764|consen 168 SPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPL---------------PSLLSKSLSDLG 232 (381)
T ss_pred cCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccccc---------------HHHhhCCHHHhC
Confidence 3456788899999999999999998 56666 8888888533221111110 011122222221
Q ss_pred ccC-CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc----cccc------cccC-
Q 029781 80 TKK-EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK----LGFN------LYFG- 147 (188)
Q Consensus 80 ~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~----~~~~------~~~~- 147 (188)
... .+...+..++++.+|++.|.+.+++.+||+|.+|..+|.++..|+............ +... -...
T Consensus 233 ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v 312 (381)
T KOG1764|consen 233 IGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGV 312 (381)
T ss_pred cchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCcc
Confidence 110 157899999999999999999999999999999999999999999976654432211 1111 1223
Q ss_pred cccCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 148 FNSGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 148 ~~~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+.+.+..++..++..|..++.+.+.|+++ +.+.|+||-
T Consensus 313 vtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSL 351 (381)
T KOG1764|consen 313 VTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISL 351 (381)
T ss_pred EEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeH
Confidence 33888999999999999999999999997 889999984
No 176
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.98 E-value=2.5e-09 Score=88.15 Aligned_cols=110 Identities=25% Similarity=0.201 Sum_probs=95.7
Q ss_pred CCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhc-----CCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccc
Q 029781 69 RNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK-----RITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFN 143 (188)
Q Consensus 69 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~-----~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~ 143 (188)
....-+++.+|+. ++++++++.++.+++..+++. ....+.|+|+++++.|+++.++++... ....+.++
T Consensus 128 ~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~----~~~~i~~i 201 (451)
T COG2239 128 SYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE----PDELLKDL 201 (451)
T ss_pred CCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----cHhHHHHH
Confidence 3456689999999 999999999999999999954 456799999999999999999998654 34457888
Q ss_pred cccCcc-cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceee
Q 029781 144 LYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIIS 184 (188)
Q Consensus 144 ~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit 184 (188)
|.+.+. +.+++..+++.+.+.+++.-.+||+++ +++.|++|
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~it 244 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIIT 244 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeee
Confidence 887755 999999999999999999999999985 69999998
No 177
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.97 E-value=1.2e-09 Score=91.04 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=79.3
Q ss_pred cccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
-+++.++++.|.+++++.+||+| +++++ +|.+|+.+... ........++.++|.+
T Consensus 351 ~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~---------------------~~~~~~~~~v~~im~~- 408 (454)
T TIGR01137 351 TETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF---------------------AGKANPDDAVSKVMSK- 408 (454)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh---------------------ccCCCcCCCHHHhcCC-
Confidence 45899999999999999999999 78888 99999873110 0011223478999988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
++.++++++++.++++.|.+++ .|+++++|+++|+||.+|+++++
T Consensus 409 -~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 409 -KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 8889999999999999998764 34454578999999999998764
No 178
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.97 E-value=4.5e-09 Score=89.65 Aligned_cols=57 Identities=30% Similarity=0.390 Sum_probs=53.3
Q ss_pred CcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhc
Q 029781 72 TYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLAL 130 (188)
Q Consensus 72 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~ 130 (188)
..+++++|.+ ++.++++++++.+|++.|.+++.+.+||+|++|+++|++|..|+.+.
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~ 123 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARA 123 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence 4689999998 89999999999999999999999999999988999999999999863
No 179
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.92 E-value=5.9e-09 Score=84.70 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=81.4
Q ss_pred ccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcc-cccc----
Q 029781 7 PSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYT-VGDF---- 78 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i---- 78 (188)
+++.+|+++|.+.+++++||++ .|+.+ ++..|+...... ......... +++.
T Consensus 246 ~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~--------------------~~~~~~~~~~l~~~~~~~ 305 (381)
T KOG1764|consen 246 TPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE--------------------GTYNNLDLSCLSEALSHR 305 (381)
T ss_pred CcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc--------------------CccCccchhHHHHHhhhc
Confidence 3489999999999999999999 77778 888887742211 001111111 2111
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781 79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133 (188)
Q Consensus 79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~ 133 (188)
+.....++++.++.++.++++.|..++++++.|+|++|.++|+||..|++.++..
T Consensus 306 ~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 306 PIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred ccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 1122257899999999999999999999999999999999999999999987754
No 180
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.89 E-value=3.4e-09 Score=87.37 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=84.0
Q ss_pred ccHHHHHHHHhc-----CcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccc
Q 029781 7 PSCLTLARLNAN-----GVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDF 78 (188)
Q Consensus 7 ~sv~~a~~~m~~-----~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 78 (188)
-|+.+++..+.+ ..+..+.|+| ++++. ++.++++ ....+..++++
T Consensus 149 ~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll---------------------------~a~~~~~i~~i 201 (451)
T COG2239 149 VTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL---------------------------TAEPDELLKDL 201 (451)
T ss_pred cCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh---------------------------cCCcHhHHHHH
Confidence 367777777773 4567899999 88899 8888887 34456799999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 79 MTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 79 m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
|.+ .++++.++++.+++.+.+.+++.-.+||+|++++++|++|..|++..+.
T Consensus 202 m~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 202 MED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred hcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 999 8999999999999999999999999999999999999999999997664
No 181
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.85 E-value=4.8e-09 Score=73.25 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=68.0
Q ss_pred ccccHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc--
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM-- 79 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im-- 79 (188)
.-.++.+|++.|.++++.++||+| +|+++ +|.+|+++........ . . . ............+.++|
T Consensus 8 ~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~------~-~--~-~~~~~~~~~~~~v~~i~~~ 77 (133)
T cd04592 8 PTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTT------R-V--Q-PEDETKQTNTCLVSSVCTK 77 (133)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccc------c-c--c-cchhhcccccccHHHHhhh
Confidence 345889999999999999999999 78988 9999988422100000 0 0 0 00000001112233454
Q ss_pred -------ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC
Q 029781 80 -------TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD 115 (188)
Q Consensus 80 -------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~ 115 (188)
.. ++.++.+++++.+|++.|.+++.+.+||+|++
T Consensus 78 ~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 78 GISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 45 78899999999999999999999999999864
No 182
>PRK11573 hypothetical protein; Provisional
Probab=98.78 E-value=1.7e-08 Score=83.10 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=80.8
Q ss_pred cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
-.++.++.+++.+++++++||.+ .++++ ++.+|++.... .........+.++++
T Consensus 205 ~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~---------------------~~~~~~~~~l~~~~r- 262 (413)
T PRK11573 205 NDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT---------------------EKKEFTKENMLRAAD- 262 (413)
T ss_pred CCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh---------------------ccCcCCHHHHHhhcc-
Confidence 36788999999999999999997 46777 99999873110 000111223456665
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
++..++++.++.++++.|++++.+...|+|+.|...|+||..|++..+
T Consensus 263 --~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei 310 (413)
T PRK11573 263 --EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 310 (413)
T ss_pred --CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence 578999999999999999999999999999999999999999999754
No 183
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=4.8e-08 Score=66.12 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=51.4
Q ss_pred cccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 73 YTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 73 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
.++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999998 8899999999999999999999999999998899999999999864
No 184
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.69 E-value=1.3e-07 Score=75.69 Aligned_cols=97 Identities=23% Similarity=0.234 Sum_probs=84.1
Q ss_pred ccHHHHHHHHhcCcccCCceee----cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccc
Q 029781 7 PSCLTLARLNANGVINSVPHLQ----LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMT 80 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd----~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (188)
.++.++++....+++..+||.+ .++|+ ||.+|+-- .......+.++|+
T Consensus 125 ~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f--------------------------~~~~~~~~~~vmt 178 (503)
T KOG2550|consen 125 TTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQF--------------------------LEDNSLLVSDVMT 178 (503)
T ss_pred ccchhhhhhcccccccccccccCCcccceeEEEEehhhhhh--------------------------hhcccchhhhhcc
Confidence 4677888888899999999996 46788 99999761 1334678899999
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 81 KKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 81 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
+ +.++.+.+.++.++-+++.+++...+||+|++|+++.++++.||.+..
T Consensus 179 ~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 179 K--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred c--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 9 779999999999999999999999999999999999999999998754
No 185
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=7.5e-08 Score=78.93 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=81.5
Q ss_pred cHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCC
Q 029781 8 SCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKED 84 (188)
Q Consensus 8 sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 84 (188)
+..++++.|...+.+.++|+| ++++. ++.+++.... . ....+.+.+.+ .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~--~~~~~~~~~~~--~ 346 (400)
T PRK10070 295 GPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL------------------------T--QQQGLDAALID--A 346 (400)
T ss_pred CHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh------------------------h--cCCchhhhhcc--C
Confidence 567899999999999999999 88888 8888876211 1 12357777777 7
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhcc
Q 029781 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIS 134 (188)
Q Consensus 85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~ 134 (188)
..++.+++++.+++..+.++... +||+|++|+++|+|+..++++.+...
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 88999999999999999987766 99999999999999999999887543
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.63 E-value=1.1e-07 Score=77.07 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=79.6
Q ss_pred cHHHHHHHHhcCcccCCceee-cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCC
Q 029781 8 SCLTLARLNANGVINSVPHLQ-LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKED 84 (188)
Q Consensus 8 sv~~a~~~m~~~~~~~~pVvd-~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 84 (188)
+..++.+.|...+...+.|+| ++++. ++.+++... ......+.+.|.+ .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~~--~ 311 (363)
T TIGR01186 260 GPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQA--------------------------RKKAQGLQDVLID--D 311 (363)
T ss_pred CHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHH--------------------------hhcCCchhhhhcc--C
Confidence 567888899988998999999 78888 877776521 1112357777877 7
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
..++.+++++.+++..|.+++.. +||+|++|+++|+||..+++.++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 88999999999999999999988 999999999999999999998764
No 187
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.63 E-value=9.5e-08 Score=79.22 Aligned_cols=133 Identities=15% Similarity=0.037 Sum_probs=92.9
Q ss_pred cccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccccc
Q 029781 6 IPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTK 81 (188)
Q Consensus 6 ~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 81 (188)
-+++.++.+.+.+++++++||++ .+.++ ++.+|++..... ... .......+.
T Consensus 224 ~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~----------------------~~~-~~~~~~~~~- 279 (429)
T COG1253 224 TDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLD----------------------GQS-DLDLRVLVR- 279 (429)
T ss_pred CCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhc----------------------Ccc-ccchhhccc-
Confidence 46788999999999999999998 56777 999998842100 000 122222333
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccc----cccc---cccCcccCCcc
Q 029781 82 KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRK----LGFN---LYFGFNSGNAY 154 (188)
Q Consensus 82 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~----~~~~---~~~~~~~~~~~ 154 (188)
++..+++++++.++++.|++++.+...|+|+.|...|+||..|++....-...+.. ...+ ......+....
T Consensus 280 --~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~ 357 (429)
T COG1253 280 --PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV 357 (429)
T ss_pred --CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence 58899999999999999999999999999999999999999999976532111110 0111 12232266667
Q ss_pred hHHHHHHHHh
Q 029781 155 FARWLLKFVG 164 (188)
Q Consensus 155 ~~~~v~~~l~ 164 (188)
.+.++.+.+.
T Consensus 358 ~l~e~~~~l~ 367 (429)
T COG1253 358 PLEELEELLG 367 (429)
T ss_pred cHHHHHHHhC
Confidence 7777666555
No 188
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.41 E-value=1.2e-06 Score=48.88 Aligned_cols=47 Identities=38% Similarity=0.585 Sum_probs=42.5
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999878999999999997654
No 189
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.37 E-value=4.7e-06 Score=67.64 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=80.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKF 162 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 162 (188)
......++.+..++++.|...+.+.+.|+|+++++.|.++.+++..+..... .+.+.+.+... +++++++.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKAQ---GLQDVLIDDIYTVDAGTLLRETVRK 327 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcCC---chhhhhccCCceECCCCcHHHHHHH
Confidence 4445667788999999999999999999999999999999999987665322 24555555555 8999999999999
Q ss_pred HhccCceEEEEEe-CCEeeceeec
Q 029781 163 VGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 163 l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
+.+++.. +||++ ++.+.|+||.
T Consensus 328 ~~~~~~~-~~v~~~~~~~~g~i~~ 350 (363)
T TIGR01186 328 VLKAGIK-VPVVDEDQRLVGIVTR 350 (363)
T ss_pred HHhCCCC-EEEECCCCcEEEEEEH
Confidence 9999998 67776 7999999985
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=9e-06 Score=66.79 Aligned_cols=107 Identities=21% Similarity=0.119 Sum_probs=83.2
Q ss_pred cccccccccCCCe---eEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781 73 YTVGDFMTKKEDL---HAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN 149 (188)
Q Consensus 73 ~~v~~im~~~~~~---~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (188)
.++.++|.+ .+ ....++.+..+++..|...+.+.++|+|+++++.|+++.+++.+..... ..+.+.+.+...
T Consensus 274 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 348 (400)
T PRK10070 274 FSAKDIARR--TPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---QGLDAALIDAPL 348 (400)
T ss_pred cchhhhhhc--CcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---CchhhhhccCCc
Confidence 466777754 22 2334667889999999999999999999999999999999998665422 234455555545
Q ss_pred -cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 150 -SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 150 -~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
+.+++++.+++..+...... +||++ ++.+.|+||.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~ 385 (400)
T PRK10070 349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISK 385 (400)
T ss_pred eeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEH
Confidence 89999999999999887777 67776 7999999985
No 191
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.21 E-value=3.6e-06 Score=63.08 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=83.9
Q ss_pred cccccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCccccccc
Q 029781 4 ISIPSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFM 79 (188)
Q Consensus 4 ~~~~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 79 (188)
-.-.++.+.+..+.+..++++||+. .+.+. +.-+||+++. ........+.++.
T Consensus 83 ~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~-----------------------~~~~~~F~i~~lL 139 (293)
T COG4535 83 KRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFM-----------------------RSDAEPFDIKELL 139 (293)
T ss_pred cccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHh-----------------------cCCcccccHHHhc
Confidence 3457889999999999999999997 45555 8888888532 1222346778887
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 80 TKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 80 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
+| ...++++..+...++-++..+.+...|+|+-|-+-|+||..|++...
T Consensus 140 RP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI 188 (293)
T COG4535 140 RP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI 188 (293)
T ss_pred cc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence 64 78999999999999999999999999999999999999999999754
No 192
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.09 E-value=5.8e-06 Score=65.89 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=77.2
Q ss_pred ccHHHHHHHHhcCcccCCceee--cCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccC
Q 029781 7 PSCLTLARLNANGVINSVPHLQ--LPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKK 82 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd--~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 82 (188)
+..+++++.+.+..+.++|+.. -++++ +..+|+++.. . ... ..+-.++++-.
T Consensus 219 ~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l------------~-----------e~~-~~~k~d~~~~a 274 (423)
T COG4536 219 DPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLL------------N-----------EKN-EFTKEDILRAA 274 (423)
T ss_pred CCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHh------------h-----------ccC-cccHhHHHHHh
Confidence 5677888999999999999996 34455 7777877421 1 111 12333444333
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 83 EDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 83 ~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
+++..+++++++.+-+..|.+++-+.-.|+|+.|.+.|+||..|++.-+
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI 323 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999643
No 193
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.06 E-value=3.5e-06 Score=70.97 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=82.5
Q ss_pred ccccHHHHHHHHhcCcccCCceee--cC----ceE--ecCCcccc--cccccc--------cchh----hhhhhccCCCC
Q 029781 5 SIPSCLTLARLNANGVINSVPHLQ--LP----ITV--ATPSHLSK--RLRFFT--------VSRE----VKAFAHNGVGI 62 (188)
Q Consensus 5 ~~~sv~~a~~~m~~~~~~~~pVvd--~~----~l~--vt~~dl~~--~~~~~~--------~~~~----~~~~~~~~~~~ 62 (188)
-++++..+++.+..+.++++||+| .+ ++. +-+++++. ..+.|. .+.. .+.+..+....
T Consensus 597 ~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i 676 (762)
T KOG0474|consen 597 RVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSI 676 (762)
T ss_pred chhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCch
Confidence 357788889999999999999998 22 333 55555442 011111 1111 00011111110
Q ss_pred CCC---CCCCCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 63 TNS---VPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 63 ~~~---~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
... .....-...+..+|.+ .++++.+++++..+..++++-+.+++.|++..++.+|++|++|+++..
T Consensus 677 ~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 677 EDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred hhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 000 0011223456778988 899999999999999999999999999999888999999999998654
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.99 E-value=1.3e-05 Score=64.45 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=82.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHH
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDD---DWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWL 159 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v 159 (188)
+++.+.|+.++.++++....+++..+||.+. ..+++|+||.+|+-.. ++....++++|.+... .+....+.++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~---~~~~~~~~~vmt~~~~~~~~gi~l~~~ 193 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL---EDNSLLVSDVMTKNPVTGAQGITLKEA 193 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh---hcccchhhhhcccccccccccccHHHH
Confidence 6788999999999999999999999999963 2579999999999655 3345567888887656 7778899999
Q ss_pred HHHHhccCceEEEEEe-CCEeeceeec
Q 029781 160 LKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 160 ~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
-+++.+...+.+|+++ ++.++.++++
T Consensus 194 neiL~~~kkGkl~iv~~~gelva~~~r 220 (503)
T KOG2550|consen 194 NEILKKIKKGKLPVVDDKGELVAMLSR 220 (503)
T ss_pred HHHHHhhhcCCcceeccCCceeeeeeh
Confidence 9999999999889997 5788888764
No 195
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.96 E-value=6e-05 Score=63.75 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=85.1
Q ss_pred ccHHHHHHHHhcCcccCCceee---cCceE--ecCCccccc------ccccccchhhhhhhccCCCCCCCCCCCCCCccc
Q 029781 7 PSCLTLARLNANGVINSVPHLQ---LPITV--ATPSHLSKR------LRFFTVSREVKAFAHNGVGITNSVPPRNGTYTV 75 (188)
Q Consensus 7 ~sv~~a~~~m~~~~~~~~pVvd---~~~l~--vt~~dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (188)
.++++...+|.++.++++||+- .+.++ +.++++... ...+...... .+....+ ............
T Consensus 566 ~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~---~~~~~~~~~~~l 641 (696)
T KOG0475|consen 566 MTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSP---SAVAGIPSRLDL 641 (696)
T ss_pred eeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCc---cccCCCCCCcCc
Confidence 5788999999999999999984 45566 888887731 1111111111 1111110 012233455678
Q ss_pred ccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhch
Q 029781 76 GDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALD 131 (188)
Q Consensus 76 ~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~ 131 (188)
+++|.. .+.++...++++.+++++++-+.+.+.|.. +|++.|+||.+|++++.
T Consensus 642 k~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 642 KDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred eeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 999998 899999999999999999999999987765 79999999999999764
No 196
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00012 Score=62.00 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=92.2
Q ss_pred CCCCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCC-----CcEEEEEehHHHhhchhccCcc-----
Q 029781 68 PRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDD-----WKLVGVVSDYDLLALDSISGSM----- 137 (188)
Q Consensus 68 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~-----~~~~Giit~~dl~~~~~~~~~~----- 137 (188)
....+++++|+|++ ++++++.-+.+..+.+.+....++.+||+|+. +++.|+|-++.++..++.....
T Consensus 577 ~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 577 PYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 34467899999999 99999999999999999999999999999853 4789999999988654321100
Q ss_pred -----------------------------------cccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEee
Q 029781 138 -----------------------------------RKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTA 180 (188)
Q Consensus 138 -----------------------------------~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~ 180 (188)
..+..+|.|.+. +.++.++..+..++..-+.+++.|+. .....
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~ 734 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV 734 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence 002234555555 88899999999999999999999996 57789
Q ss_pred ceeec
Q 029781 181 NIISS 185 (188)
Q Consensus 181 giit~ 185 (188)
|++|+
T Consensus 735 gilTR 739 (762)
T KOG0474|consen 735 GILTR 739 (762)
T ss_pred EEEeh
Confidence 99986
No 197
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.39 E-value=0.00017 Score=42.12 Aligned_cols=45 Identities=18% Similarity=-0.064 Sum_probs=38.9
Q ss_pred ccccccCcc-cCCcchHHHHHHHHhccCceEEEEE-eCCEeeceeec
Q 029781 141 GFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTV-EGAMTANIISS 185 (188)
Q Consensus 141 ~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv-~~~~~~giit~ 185 (188)
+++|.+.+. +.+++++.++.+.|.+++...+||+ +++.+.|++|.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence 456776555 9999999999999999999999999 46899999985
No 198
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00071 Score=51.96 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=65.0
Q ss_pred CCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCC--CeeEEcCCCCHHHHH
Q 029781 23 SVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKE--DLHAVKTTTTVDEAL 98 (188)
Q Consensus 23 ~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~ 98 (188)
.+.|+++|+++ -++.+++.. +...+...+++.... ........++.+.|.+.. +--.+.......+++
T Consensus 205 ri~vm~~G~i~Q~~~P~~il~~---Pan~FV~~f~g~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 276 (309)
T COG1125 205 RIAVMDAGEIVQYDTPDEILAN---PANDFVEDFFGESER-----GLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDAL 276 (309)
T ss_pred eEEEecCCeEEEeCCHHHHHhC---ccHHHHHHHhccccc-----cccccchhhHHHhhcccccccCCccccchhhHHHH
Confidence 46677777777 777777642 234455555554321 112334556677776521 112344455566788
Q ss_pred HHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 99 ERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 99 ~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
..+...+.+.+||+|++|+++|.+|..+++.
T Consensus 277 s~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 277 SDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred HHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 8888899999999999999999999999875
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.005 Score=52.53 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=76.0
Q ss_pred eeEEcC-CCCHHHHHHHHHhcCCCeEEEE-c-CCCcEEEEEehHHHhhchhccCcc------------------------
Q 029781 85 LHAVKT-TTTVDEALERLVEKRITGFPVI-D-DDWKLVGVVSDYDLLALDSISGSM------------------------ 137 (188)
Q Consensus 85 ~~~v~~-~~~l~~~~~~m~~~~~~~~pVv-d-~~~~~~Giit~~dl~~~~~~~~~~------------------------ 137 (188)
...+.. +.++++...+|.+..++.+||+ + +.++++|++.++++...+......
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 344444 4899999999999999999987 3 346899999999998543211000
Q ss_pred -cccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 138 -RKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 138 -~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
....++|...+. +...++.+.+.+++.+-+.....|.+++.+.|+||.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitk 687 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITK 687 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeeh
Confidence 013445554444 778889999999999999999999999999999985
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.02 E-value=0.00074 Score=53.37 Aligned_cols=139 Identities=19% Similarity=0.082 Sum_probs=93.6
Q ss_pred CCceeecCceE--ecCCcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCCeeEEcCCCCHHHHHHH
Q 029781 23 SVPHLQLPITV--ATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALER 100 (188)
Q Consensus 23 ~~pVvd~~~l~--vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~ 100 (188)
++.++.+|+++ =|+.+|+... +......++... ....-.++.++|.+.+....-.+......++..
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl~~P---AndYV~~Fv~~v---------~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~ 301 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEILLNP---ANDYVRDFVRNV---------DRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKL 301 (386)
T ss_pred eEEEecCCeEEEeCCHHHHHcCc---cHHHHHHHHhcC---------ChhheeeHHHhhcccccccccccccccchhhhh
Confidence 46667777877 6777777421 112222222211 223346789999852122233334445678888
Q ss_pred HHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEeCCEe
Q 029781 101 LVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMT 179 (188)
Q Consensus 101 m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~ 179 (188)
+.....+.+.+++..++.+|+++..++... .+.+.+. +..++.+.+......+....++++-+++..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVvde~~r~ 369 (386)
T COG4175 302 LRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------ALIDDVLTVDADTPLSEILARIRQAPCPVAVVDEDGRY 369 (386)
T ss_pred hhhccchhhHHHhccCceeeEEeccchhcc------------cccccccccCccchHHHHHHHHhcCCCceeEEcCCCcE
Confidence 988888888888877789999999998764 1233333 788899999999999888888666678999
Q ss_pred eceeec
Q 029781 180 ANIISS 185 (188)
Q Consensus 180 ~giit~ 185 (188)
.|+++.
T Consensus 370 vG~i~~ 375 (386)
T COG4175 370 VGIISR 375 (386)
T ss_pred EEEecH
Confidence 999875
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.26 E-value=0.016 Score=47.56 Aligned_cols=102 Identities=14% Similarity=-0.007 Sum_probs=67.5
Q ss_pred CCCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCcccccccccccCcc
Q 029781 70 NGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFN 149 (188)
Q Consensus 70 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~ 149 (188)
..-.++.++|.+ .......+ .. .+++. ++.+.+.|+|. |+++..+...+..... ...+.+.......
T Consensus 271 ~~~l~a~~~m~~--~~~~~~~~-~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 337 (382)
T TIGR03415 271 LNVLTARSLMRP--LTDLEHVD-GG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-EQEVESLEAAPTV 337 (382)
T ss_pred ccceeHHHHhcc--cccccccC-cc-hhhhh---cccceeEeecc-----ceecccchHhHhhccc-ccchhhhcccCcc
Confidence 345688999965 33333333 22 44443 78888999985 8888887665433211 1223443333344
Q ss_pred cCCcchHHHHHHHHhccCceEEEEEeCCEeeceeec
Q 029781 150 SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISS 185 (188)
Q Consensus 150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit~ 185 (188)
+++++++.+++..+.+..... +|++++.+.|+|+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~g~~~~ 372 (382)
T TIGR03415 338 INPDTLMRDVLAARHRTGGAI-LLVENGRIVGVIGD 372 (382)
T ss_pred cCCCCcHHHHHHHHhcCCCCe-EEeeCCeEEEEEeH
Confidence 899999999999888877765 66788999999985
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.12 E-value=0.018 Score=45.76 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=44.4
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 78 FMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 78 im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
.+.+ .+.++..++++.+.+..+.+.+. .+||+|++++++|+++...++.++.
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 4555 67889999999999998887764 5889999999999999999998764
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.90 E-value=0.019 Score=47.09 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=44.2
Q ss_pred ccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 74 TVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 74 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
.+.+ +.. +..++++++++.+++..+.+.+. .++|+|+ |+++|+|+..+++.++.
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 3444 444 67889999999999999988775 4888885 99999999999998763
No 204
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.32 E-value=0.032 Score=37.32 Aligned_cols=47 Identities=17% Similarity=0.001 Sum_probs=38.9
Q ss_pred ccccccccCcc-cCCcchHHHHHHHHhccCceEEEEEe-CCEeeceeec
Q 029781 139 KLGFNLYFGFN-SGNAYFARWLLKFVGGINCGFLLTVE-GAMTANIISS 185 (188)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~-~~~~~giit~ 185 (188)
.+.++|.+.+. +.+++.+.++.+.|.+++...+||++ ++.+.|+++.
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~ 107 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITL 107 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence 35677766555 88899999999999999988899997 4789999984
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.11 Score=45.65 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCC--cEEEEEehHHHhhchh
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDW--KLVGVVSDYDLLALDS 132 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~--~~~Giit~~dl~~~~~ 132 (188)
-.+.|+++|.+ ++.++..+++..|..+.+....++.+|+||+.+ -++|.|.++.+..+++
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 35789999999 999999999999999888877799999998643 4899999999987664
No 206
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=93.04 E-value=0.17 Score=27.01 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=29.8
Q ss_pred cCCcchHHHHHHHHhccCceEEEEEeC-CEeeceeec
Q 029781 150 SGNAYFARWLLKFVGGINCGFLLTVEG-AMTANIISS 185 (188)
Q Consensus 150 ~~~~~~~~~v~~~l~~~~~~~~~vv~~-~~~~giit~ 185 (188)
+.++....++.+.|.+++...++++++ +...|+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 5 VSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTR 41 (49)
T ss_pred ecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence 566778888999999888888899876 788899874
No 207
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=88.94 E-value=0.8 Score=39.05 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=73.7
Q ss_pred CCcccccccccCCCeeEEcCCCCHH-HHHHHHHhcCCCeEEEEcCCC-cEEEEEehHHHhhchhc--cCccccccccccc
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVD-EALERLVEKRITGFPVIDDDW-KLVGVVSDYDLLALDSI--SGSMRKLGFNLYF 146 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~--~~~~~~~~~~~~~ 146 (188)
....++++|++-.++.....+..+. +......+++++++||.+.+. ..+|.+=....+.+... .....++...+..
T Consensus 202 ~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~ 281 (498)
T KOG2118|consen 202 TEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALL 281 (498)
T ss_pred HHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhcc
Confidence 4567899999877778888888886 666677799999999997542 23333222333333321 1122234555544
Q ss_pred Ccc-cCCcchHHHHHHHHhccCceEEEEEeCCEeeceee
Q 029781 147 GFN-SGNAYFARWLLKFVGGINCGFLLTVEGAMTANIIS 184 (188)
Q Consensus 147 ~~~-~~~~~~~~~v~~~l~~~~~~~~~vv~~~~~~giit 184 (188)
... ++.........+.+...+.+.+.+.......++++
T Consensus 282 ~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~ 320 (498)
T KOG2118|consen 282 RLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLT 320 (498)
T ss_pred ccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEe
Confidence 444 88888888888888888888877776444444443
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=81.16 E-value=2.5 Score=37.70 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=43.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhc
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI 133 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~ 133 (188)
.+.-+-+.+++.++-.++.--++++..|.+ .|+++|+|.++++.++++.
T Consensus 811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 811 APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence 445677889999999999999999999998 6999999999999998875
No 209
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=79.01 E-value=3.9 Score=25.45 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCcEEEEEehHHHhhchhccCc
Q 029781 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISGS 136 (188)
Q Consensus 106 ~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~ 136 (188)
...+-|+|++|..+|+++..+.++.....+.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~l 42 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKGL 42 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcCC
Confidence 3567788999999999999999987765543
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=66.53 E-value=12 Score=32.09 Aligned_cols=93 Identities=13% Similarity=-0.005 Sum_probs=63.3
Q ss_pred HHHHHHhcCcccCCceee-cCceEecC---CcccccccccccchhhhhhhccCCCCCCCCCCCCCCcccccccccCCCee
Q 029781 11 TLARLNANGVINSVPHLQ-LPITVATP---SHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLH 86 (188)
Q Consensus 11 ~a~~~m~~~~~~~~pVvd-~~~l~vt~---~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~ 86 (188)
+......+.+++++||.+ +.+-.++. ..+++. ..........++.+.+.. ...
T Consensus 228 ~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~---------------------~~~~~~~~~~~v~~~~~~--~l~ 284 (498)
T KOG2118|consen 228 ETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRL---------------------LQVEVPLEPLPVSESALL--RLP 284 (498)
T ss_pred HHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhh---------------------hccccccccccchhhhcc--ccc
Confidence 344556688999999998 33222222 111100 001123445678888877 788
Q ss_pred EEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHH
Q 029781 87 AVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127 (188)
Q Consensus 87 ~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl 127 (188)
.+++++++.+.++.+.+.+.+.+.|.+ ...-+|+++..++
T Consensus 285 ~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 285 LVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL 324 (498)
T ss_pred cCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence 899999999999999988877776666 5567899999987
No 211
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=63.67 E-value=13 Score=32.11 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhh
Q 029781 92 TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLA 129 (188)
Q Consensus 92 ~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~ 129 (188)
..++.+.+...+.|-..++|+. ++++.|+|..+|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcc
Confidence 4577788888888888999997 689999999999986
No 212
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=55.90 E-value=14 Score=24.58 Aligned_cols=19 Identities=47% Similarity=0.459 Sum_probs=13.8
Q ss_pred CeEEEEcCCCcEEEEEehH
Q 029781 107 TGFPVIDDDWKLVGVVSDY 125 (188)
Q Consensus 107 ~~~pVvd~~~~~~Giit~~ 125 (188)
-..||.|.+|+++|+|...
T Consensus 92 ~~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEeeECCCCcEEEEEEEE
Confidence 3589998889999999753
No 213
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=54.85 E-value=20 Score=26.07 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCcEEEEEehHHHhhchhccC
Q 029781 106 ITGFPVIDDDWKLVGVVSDYDLLALDSISG 135 (188)
Q Consensus 106 ~~~~pVvd~~~~~~Giit~~dl~~~~~~~~ 135 (188)
...+-+++++|.-+|+++..+.+......+
T Consensus 18 ~~evrlIg~~GeqlGiv~~~eAL~lA~e~~ 47 (176)
T COG0290 18 AREVRLIGEDGEQLGIVSIEEALKLAEEAG 47 (176)
T ss_pred ccEEEEECCCCcEEcceeHHHHHHHHHHcC
Confidence 344556676777777777777776554443
No 214
>PF14044 NETI: NETI protein
Probab=51.60 E-value=23 Score=20.67 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEcCCCCHHHHHHHHHhcCCCeEEEEc
Q 029781 87 AVKTTTTVDEALERLVEKRITGFPVID 113 (188)
Q Consensus 87 ~v~~~~~l~~~~~~m~~~~~~~~pVvd 113 (188)
.|.++.++.+.++.|.+.|+ .||-.
T Consensus 3 eV~enETI~~CL~RM~~eGY--~PvrR 27 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVRR 27 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cceee
Confidence 57889999999999999886 56643
No 215
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=47.66 E-value=18 Score=26.46 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHhcCCCeEEEEcCCC-cEEEEEehHHHh
Q 029781 92 TTVDEALERLVEKRITGFPVIDDDW-KLVGVVSDYDLL 128 (188)
Q Consensus 92 ~~l~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~ 128 (188)
.+..+|++...+.+.+.+.|-.... -++=+++...+.
T Consensus 35 ~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~dy~k~~ 72 (177)
T PRK00028 35 VSTREALELAEEAGLDLVEISPNAKPPVCKIMDYGKFK 72 (177)
T ss_pred eeHHHHHHHHHHcCCCEEEECCCCCCCEEEEEeHHHHH
Confidence 6788999999999988776543222 467777766654
No 216
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=46.13 E-value=17 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEehHHHh
Q 029781 92 TTVDEALERLVEKRITGFPVIDD-DWKLVGVVSDYDLL 128 (188)
Q Consensus 92 ~~l~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~ 128 (188)
.+..+|+++..+.+.+-+-|-.. +--++=+++...+.
T Consensus 23 ~~~~eAl~~A~~~~lDLVev~~~a~PPVckImdy~k~~ 60 (165)
T TIGR00168 23 VSREEALEIAEEAGLDLVLISPNAKPPVCKIMDYGKYK 60 (165)
T ss_pred ccHHHHHHHHHHcCCcEEEECCCCCCCEEEEeeHHHHH
Confidence 56788888888888886654322 22467777766554
No 217
>CHL00199 infC translation initiation factor 3; Provisional
Probab=45.80 E-value=20 Score=26.31 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEehHHHh
Q 029781 92 TTVDEALERLVEKRITGFPVIDDD-WKLVGVVSDYDLL 128 (188)
Q Consensus 92 ~~l~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~ 128 (188)
.+..+|++...+.+.+.+.|-... --++=+++.....
T Consensus 40 ~~~~eAl~~A~~~~lDLVeVs~~a~PPVCKImdygK~k 77 (182)
T CHL00199 40 FTSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDYGKYK 77 (182)
T ss_pred eeHHHHHHHHHHcCCCEEEECCCCCCCeEEEeehHHHH
Confidence 567889999998888877665322 2477778766654
No 218
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=44.24 E-value=42 Score=29.66 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=26.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEe
Q 029781 84 DLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVS 123 (188)
Q Consensus 84 ~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit 123 (188)
.++.|.......+. +........||.|.+|+++|+++
T Consensus 126 ~pv~v~g~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 126 QPVKTMGDQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred CceEEecHHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 56666665555443 33445677999999999999996
No 219
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=40.52 E-value=35 Score=20.76 Aligned_cols=17 Identities=47% Similarity=0.778 Sum_probs=13.3
Q ss_pred eEEEEcCCCcEEEEEeh
Q 029781 108 GFPVIDDDWKLVGVVSD 124 (188)
Q Consensus 108 ~~pVvd~~~~~~Giit~ 124 (188)
..||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 36888878999998754
No 220
>smart00594 UAS UAS domain.
Probab=37.90 E-value=23 Score=23.85 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhcC---CCeEEEEcCCC---------cEEEEEehHHHhh
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKR---ITGFPVIDDDW---------KLVGVVSDYDLLA 129 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~---~~~~pVvd~~~---------~~~Giit~~dl~~ 129 (188)
.+..+.+++.. +++....+.+-.+..+++...+ ...+.+++.++ ++-|.++.++++.
T Consensus 51 ~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~ 119 (122)
T smart00594 51 CNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMT 119 (122)
T ss_pred cCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHH
Confidence 35567778877 7777555555455666666554 44566777665 3445555555543
No 221
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=36.26 E-value=26 Score=22.75 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=16.5
Q ss_pred HhcCCCeEEEEcCCCcEEEE
Q 029781 102 VEKRITGFPVIDDDWKLVGV 121 (188)
Q Consensus 102 ~~~~~~~~pVvd~~~~~~Gi 121 (188)
...+.+.-||+|.+|+++|+
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 34677889999999999996
No 222
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=30.02 E-value=45 Score=21.36 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=10.4
Q ss_pred CeEEEEcCCCcEEEEE
Q 029781 107 TGFPVIDDDWKLVGVV 122 (188)
Q Consensus 107 ~~~pVvd~~~~~~Gii 122 (188)
...|+.|++|++.|++
T Consensus 84 ~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 84 RYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 3477888788888875
No 223
>PHA00673 acetyltransferase domain containing protein
Probab=28.31 E-value=1.4e+02 Score=21.31 Aligned_cols=83 Identities=8% Similarity=-0.068 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHHhhchhccCccccccccc-ccCcc--cCCcchHHHHHHHHhccCc
Q 029781 92 TTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNL-YFGFN--SGNAYFARWLLKFVGGINC 168 (188)
Q Consensus 92 ~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~v~~~l~~~~~ 168 (188)
.+-.++++.+.+.+-..+.|...+|+++|.+...-+-...........++.+- .+... --......++.+...+.+.
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc 119 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGA 119 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCC
Confidence 55667788888888888888866789999776644432111100000111111 11111 0112455677777777777
Q ss_pred eEEEEE
Q 029781 169 GFLLTV 174 (188)
Q Consensus 169 ~~~~vv 174 (188)
..+.+-
T Consensus 120 ~~lyis 125 (154)
T PHA00673 120 TGLYVS 125 (154)
T ss_pred CEEEEe
Confidence 765543
No 224
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=27.76 E-value=81 Score=20.63 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCcccccccccCCCeeEEcCCCCHHHHHHHHHhc---CCCeEEEEcC-CCcE----EEEEehHHHhhch
Q 029781 71 GTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEK---RITGFPVIDD-DWKL----VGVVSDYDLLALD 131 (188)
Q Consensus 71 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~---~~~~~pVvd~-~~~~----~Giit~~dl~~~~ 131 (188)
.+..+.+.+.. +++.+..+.+-.++.++.... +...+.++|. +|.+ .|.++.++++..+
T Consensus 41 ~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 41 SNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred CCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHH
Confidence 34567778876 677666554433445555444 4555667787 6754 4777888777654
No 225
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=25.41 E-value=96 Score=18.06 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=29.1
Q ss_pred cCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehHHH
Q 029781 89 KTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDL 127 (188)
Q Consensus 89 ~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl 127 (188)
....++.+.++...+.|++.+.+.|- +.+-|.....+.
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh-~~~~~~~~~~~~ 49 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDH-GNLFGAVEFYKA 49 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeC-CcccCHHHHHHH
Confidence 55678999999999999999999984 566665544443
No 226
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=23.65 E-value=67 Score=17.94 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=8.2
Q ss_pred EcCCCcEEEE
Q 029781 112 IDDDWKLVGV 121 (188)
Q Consensus 112 vd~~~~~~Gi 121 (188)
+|++|+++|+
T Consensus 35 ~d~~G~ivGI 44 (50)
T PF10049_consen 35 YDEDGRIVGI 44 (50)
T ss_pred ECCCCCEEEE
Confidence 5778899996
No 227
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=22.87 E-value=1.7e+02 Score=18.58 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=20.1
Q ss_pred CHHHHHHHHHhcCCCeEEEEcCCCcEEEEEehH
Q 029781 93 TVDEALERLVEKRITGFPVIDDDWKLVGVVSDY 125 (188)
Q Consensus 93 ~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~ 125 (188)
+.....+.+. .+...+.|...+++++|.+...
T Consensus 31 ~~~~~~~~~~-~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 31 SPEDLEEYLE-EGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp SHHHHHHHHC-TCCCEEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHH-hcCCEEEEEEECCEEEEEEEEc
Confidence 3444444444 4435566666689999999854
No 228
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.45 E-value=1.1e+02 Score=21.52 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.6
Q ss_pred cCCCeEEEEcCCCcEEEEEe
Q 029781 104 KRITGFPVIDDDWKLVGVVS 123 (188)
Q Consensus 104 ~~~~~~pVvd~~~~~~Giit 123 (188)
.+-+.-|+.|+.|+++||+-
T Consensus 105 ~GDSGRpi~DNsGrVVaIVL 124 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIVL 124 (158)
T ss_dssp TTSTTEEEESTTSBEEEEEE
T ss_pred CCCCCCccCcCCCCEEEEEe
Confidence 45567899999999999984
No 229
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=22.14 E-value=82 Score=21.51 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=12.8
Q ss_pred eEEEEcCCCcEEEEEeh
Q 029781 108 GFPVIDDDWKLVGVVSD 124 (188)
Q Consensus 108 ~~pVvd~~~~~~Giit~ 124 (188)
.+|+.|..|+++|.--+
T Consensus 80 ifPI~d~~G~vvgF~gR 96 (128)
T PF08275_consen 80 IFPIRDERGRVVGFGGR 96 (128)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEecc
Confidence 58999999999997765
No 230
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=22.07 E-value=45 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.9
Q ss_pred cCCCcEEEEEehHHHhhchhcc
Q 029781 113 DDDWKLVGVVSDYDLLALDSIS 134 (188)
Q Consensus 113 d~~~~~~Giit~~dl~~~~~~~ 134 (188)
+++|++.|-||..|+...+...
T Consensus 23 g~~gklfGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 23 GENGKLFGSVTSKDIAKALKEQ 44 (87)
T ss_dssp SSCSSBSSEBSHHHHHHHHHHC
T ss_pred cCCcceecCcCHHHHHHHHHHh
Confidence 4578999999999999888765
No 231
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=21.92 E-value=71 Score=25.49 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=30.8
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEE
Q 029781 85 LHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVV 122 (188)
Q Consensus 85 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Gii 122 (188)
...+.|++++++.++.+.+.+...+.|+..+.++.+++
T Consensus 15 l~~vAPGT~LR~Gld~Ilra~tGaLIvlG~de~v~~i~ 52 (349)
T COG1623 15 LKRVAPGTPLRDGLDNILRANTGALIVLGDDENVEKIC 52 (349)
T ss_pred HHHhCCCCchHHHHHHHHhccCCeEEEEecchhhHhhh
Confidence 45688999999999999999999999986555554443
No 232
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.89 E-value=64 Score=20.75 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=14.7
Q ss_pred hcCCCeEEEEcCCCc----EEEEEehHHHhh
Q 029781 103 EKRITGFPVIDDDWK----LVGVVSDYDLLA 129 (188)
Q Consensus 103 ~~~~~~~pVvd~~~~----~~Giit~~dl~~ 129 (188)
-.+...+.+.|++|+ +.|.++..++..
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HHHHHH
T ss_pred CCccCEEEEEcCCCCEEEEecCCCCHHHHHh
Confidence 344555656687776 567777777654
No 233
>PRK10638 glutaredoxin 3; Provisional
Probab=21.41 E-value=2.1e+02 Score=17.43 Aligned_cols=31 Identities=32% Similarity=0.236 Sum_probs=19.3
Q ss_pred HHHhcCCCeEEEEcCCCcEEEEEehHHHhhchh
Q 029781 100 RLVEKRITGFPVIDDDWKLVGVVSDYDLLALDS 132 (188)
Q Consensus 100 ~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 132 (188)
+...++...+|++--+|+++|= ..++..+..
T Consensus 44 l~~~~g~~~vP~i~~~g~~igG--~~~~~~~~~ 74 (83)
T PRK10638 44 MIKRSGRTTVPQIFIDAQHIGG--CDDLYALDA 74 (83)
T ss_pred HHHHhCCCCcCEEEECCEEEeC--HHHHHHHHH
Confidence 3445677889988445776653 366655544
No 234
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=20.26 E-value=1.3e+02 Score=21.80 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=30.9
Q ss_pred cccccccc-CCCeeEEcCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEeh
Q 029781 74 TVGDFMTK-KEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSD 124 (188)
Q Consensus 74 ~v~~im~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~~~~~Giit~ 124 (188)
++.|+|.- .-+...++++-.+.--+-.......-.+.-.|.+|+++|.+-.
T Consensus 8 r~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlA 59 (193)
T KOG3235|consen 8 RPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLA 59 (193)
T ss_pred CHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeee
Confidence 44555432 0145566677666665555555544455566789999999854
Done!