BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029782
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 117/177 (66%), Gaps = 11/177 (6%)
Query: 23 QTSFRPKALVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNK 82
Q SFRP ALV+PV K+A+ QYVT I QRTPLV LVV LGG LWVDC++ YVSST +
Sbjct: 1 QPSFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYR 60
Query: 83 TARCGSAQCHLIGLVACG-----------GGKCGDFPNNPISNTGTIGDIRIDVVSVQST 131
RC ++QC L G +ACG CG FP NP+ NT T G++ DVVSV+ST
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 132 NGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAAFSLNRK 188
+G + GR VTVP FIF C +L+ LA GV G+A LGRT+ ALP Q A+AFS RK
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 116/175 (66%), Gaps = 11/175 (6%)
Query: 25 SFRPKALVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTA 84
SFRP ALV+PV K+A+ QYVT I QRTPLV LVV LGG LWVDC++ YVSST +
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 85 RCGSAQCHLIGLVACG-----------GGKCGDFPNNPISNTGTIGDIRIDVVSVQSTNG 133
RC ++QC L G +ACG CG FP NP+ NT T G++ DVVSV+ST+G
Sbjct: 63 RCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDG 122
Query: 134 RNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAAFSLNRK 188
+ GR VTVP FIF C +L+ LA GV G+A LGRT+ ALP Q A+AFS RK
Sbjct: 123 SSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 31 LVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQ 90
+VLPV + + + +++RTPL+ V ++V L GN LWV+CE+ Y S T + C S Q
Sbjct: 10 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 69
Query: 91 CHLIGLV-----------ACGGGKCGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRG 139
C C CG NPI+ +G++ DV+++ +T G G
Sbjct: 70 CSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLG 129
Query: 140 --VTVPNFIFLCGSEF-VLRGLAPGVTGIAALGRTKTALPLQLAAAFSLNRK 188
VTVP F+F C F V +GL G+A LG +LP QLA+ F L R+
Sbjct: 130 PLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQ 181
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 21/170 (12%)
Query: 31 LVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQ 90
++ PV K+ A Y LV+ + G L+W CE G + C S
Sbjct: 5 VLAPVTKDTATSLYTIPFHDG-----ASLVLDVAGLLVWSTCEGG---QSPAEIACSSPT 56
Query: 91 CHLIGLV--------ACGGGK----CGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGR 138
C L +CG + C +P+NP++ G + + +T+G P
Sbjct: 57 CLLANAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVS 116
Query: 139 GVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAAFSLNRK 188
V V + C +L L G TG+A L + ALP Q+A+A + K
Sbjct: 117 EVNV-RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNK 165
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 31 LVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQ 90
++ PV K+ A Y LV+ + G L+W C+ G + C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDG-----ASLVLDVAGPLVWSTCDGGQPPAE---IPCSSPT 54
Query: 91 CHLIGLV--------ACGGGK----CGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGR 138
C L +CG K C +P NP+S G + +T+G P
Sbjct: 55 CLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVS 114
Query: 139 GVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAA 182
V V + C +L L G TG+A L + ALP Q+A+A
Sbjct: 115 KVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASA 157
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 31 LVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQ 90
++ PV K+ A Y LV+ + G L+W C+ G + C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDG-----ASLVLDVAGPLVWSTCKGGQPPAE---IPCSSPT 54
Query: 91 CHLIGLV--------ACGGGK----CGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGR 138
C L +CG K C +P NP+S G + +T+G P
Sbjct: 55 CLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVS 114
Query: 139 GVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAA 182
V V + C +L L G TG+A L + ALP Q+A+A
Sbjct: 115 KVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASA 157
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 92 HLIGLVACGGGKCGDFPNNPISNTGTI------GDIRIDVVSVQ------STNGRNPGRG 139
H++GL A GGG GD ++ S T+ G IRI V + NG+N G
Sbjct: 23 HMVGLTAAGGG-SGDAQSSQSSGAATVAAIKEKGVIRIGVFGDKPPFGYVDANGKNQGFD 81
Query: 140 VTVPNFIF--LCGS----EFVL 155
V + + L GS EFVL
Sbjct: 82 VEIAKDLAKDLLGSPDKVEFVL 103
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 43 QYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGG 102
YV + +P L+V G + W+ +K YV ++ +A V G
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVS------VTYG-- 64
Query: 103 KCGDFPNNPISNTGTIGDIRI 123
G F ++T T+G + I
Sbjct: 65 -SGSFSGTEYTDTVTLGSLTI 84
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3
Mutant, Mvv
Length = 329
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 36 LKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHL 93
L N QY T I TP K+++ G + LWV + CGS C L
Sbjct: 7 LTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWV-----------PSNECGSLACFL 53
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 36 LKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHL 93
L N QY T I TP K+++ G + LWV + CGS C L
Sbjct: 7 LTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWV-----------PSNECGSLACFL 53
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3
Mutant Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 36 LKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHL 93
L N QY T I TP K+++ G + LWV + CGS C L
Sbjct: 7 LTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWV-----------PSNECGSLACFL 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,175,117
Number of Sequences: 62578
Number of extensions: 212751
Number of successful extensions: 347
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 13
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)