Query 029782
Match_columns 188
No_of_seqs 113 out of 1043
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14543 TAXi_N: Xylanase inhi 100.0 1.3E-29 2.8E-34 197.6 12.7 132 44-182 1-140 (164)
2 PLN03146 aspartyl protease fam 100.0 2.4E-28 5.1E-33 216.3 14.8 137 40-182 81-232 (431)
3 KOG1339 Aspartyl protease [Pos 99.9 1E-27 2.2E-32 210.2 11.8 141 39-186 42-197 (398)
4 cd05489 xylanase_inhibitor_I_l 99.9 7.1E-25 1.5E-29 190.3 12.8 134 50-185 2-148 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 99.9 1.8E-23 3.8E-28 178.6 13.2 128 42-174 2-142 (326)
6 cd05475 nucellin_like Nucellin 99.9 1.9E-22 4.1E-27 168.4 13.7 112 42-182 1-114 (273)
7 cd05472 cnd41_like Chloroplast 99.9 1.4E-22 3E-27 170.8 10.8 101 43-182 1-101 (299)
8 cd05490 Cathepsin_D2 Cathepsin 99.9 2.8E-21 6E-26 164.7 13.3 119 38-176 1-126 (325)
9 PTZ00165 aspartyl protease; Pr 99.9 4.1E-21 8.8E-26 172.2 12.5 120 32-174 110-241 (482)
10 cd05488 Proteinase_A_fungi Fun 99.9 3.5E-21 7.6E-26 164.0 10.8 123 33-178 1-130 (320)
11 cd05478 pepsin_A Pepsin A, asp 99.9 1.2E-20 2.6E-25 160.4 14.0 126 34-182 2-140 (317)
12 cd05477 gastricsin Gastricsins 99.8 2E-20 4.3E-25 159.0 14.0 120 41-182 1-133 (318)
13 cd05476 pepsin_A_like_plant Ch 99.8 6.5E-21 1.4E-25 158.3 10.5 100 43-182 1-100 (265)
14 cd05485 Cathepsin_D_like Cathe 99.8 3.1E-20 6.6E-25 158.9 13.7 128 34-182 3-143 (329)
15 cd05486 Cathespin_E Cathepsin 99.8 3.4E-20 7.3E-25 157.6 12.0 110 44-175 1-117 (316)
16 cd06098 phytepsin Phytepsin, a 99.8 4.7E-20 1E-24 157.0 12.7 120 34-175 2-128 (317)
17 cd05471 pepsin_like Pepsin-lik 99.8 9.9E-20 2.2E-24 150.5 14.2 127 44-184 1-133 (283)
18 PTZ00147 plasmepsin-1; Provisi 99.8 2.2E-19 4.8E-24 159.9 13.9 126 26-175 123-257 (453)
19 cd06097 Aspergillopepsin_like 99.8 1.1E-19 2.4E-24 151.7 11.1 111 44-175 1-119 (278)
20 cd05470 pepsin_retropepsin_lik 99.8 3.5E-19 7.5E-24 128.8 10.9 104 46-168 1-109 (109)
21 PTZ00013 plasmepsin 4 (PM4); P 99.8 8.5E-19 1.8E-23 156.0 14.5 131 29-183 125-270 (450)
22 cd05487 renin_like Renin stimu 99.8 1.7E-18 3.7E-23 147.8 13.1 116 38-174 3-125 (326)
23 cd05474 SAP_like SAPs, pepsin- 99.7 2E-17 4.3E-22 138.6 12.1 91 43-182 2-103 (295)
24 cd05473 beta_secretase_like Be 99.7 2.2E-17 4.8E-22 143.0 11.2 114 42-174 2-117 (364)
25 PF00026 Asp: Eukaryotic aspar 99.7 7.9E-17 1.7E-21 135.5 8.6 123 43-186 1-137 (317)
26 cd05483 retropepsin_like_bacte 97.7 0.00021 4.6E-09 49.3 6.9 94 42-170 1-94 (96)
27 TIGR02281 clan_AA_DTGA clan AA 95.5 0.16 3.5E-06 37.4 9.0 102 33-170 2-103 (121)
28 PF13650 Asp_protease_2: Aspar 93.1 0.91 2E-05 30.4 7.8 23 47-71 2-24 (90)
29 cd05479 RP_DDI RP_DDI; retrope 91.1 2.1 4.6E-05 31.4 8.2 30 40-71 13-42 (124)
30 cd05484 retropepsin_like_LTR_2 84.3 1.4 3E-05 30.3 3.4 26 44-71 1-26 (91)
31 PF13975 gag-asp_proteas: gag- 76.5 5.4 0.00012 26.3 4.0 30 40-71 5-34 (72)
32 cd05475 nucellin_like Nucellin 62.1 13 0.00029 30.6 4.3 41 32-72 147-193 (273)
33 PF00077 RVP: Retroviral aspar 60.7 15 0.00032 25.2 3.7 25 45-71 7-31 (100)
34 COG3577 Predicted aspartyl pro 53.5 56 0.0012 26.6 6.3 43 26-71 89-131 (215)
35 PF05399 EVI2A: Ectropic viral 50.9 11 0.00024 30.6 1.9 17 1-17 128-144 (227)
36 PF10794 DUF2606: Protein of u 48.4 46 0.001 24.7 4.6 50 5-61 14-63 (131)
37 cd05482 HIV_retropepsin_like R 47.7 27 0.00058 24.2 3.2 22 48-71 3-24 (87)
38 KOG4084 Transmembrane protein 44.0 64 0.0014 24.4 4.9 20 5-24 14-33 (149)
39 PLN03146 aspartyl protease fam 42.2 33 0.00071 30.6 3.8 42 31-72 268-323 (431)
40 PRK10884 SH3 domain-containing 41.8 93 0.002 25.1 6.0 48 25-72 26-82 (206)
41 cd06095 RP_RTVL_H_like Retrope 41.6 29 0.00062 23.5 2.6 18 54-71 7-24 (86)
42 PF12384 Peptidase_A2B: Ty3 tr 37.6 49 0.0011 26.0 3.6 25 47-71 36-60 (177)
43 cd05471 pepsin_like Pepsin-lik 34.7 67 0.0014 25.8 4.3 42 30-72 169-218 (283)
44 cd06098 phytepsin Phytepsin, a 32.2 55 0.0012 27.6 3.4 30 42-71 188-225 (317)
45 PF07172 GRP: Glycine rich pro 29.4 30 0.00065 24.4 1.1 9 15-23 17-25 (95)
46 cd06096 Plasmepsin_5 Plasmepsi 28.3 57 0.0012 27.6 2.9 31 42-72 208-247 (326)
47 KOG1339 Aspartyl protease [Pos 26.8 1.2E+02 0.0025 26.6 4.7 42 30-72 231-284 (398)
48 PRK09458 pspB phage shock prot 25.1 60 0.0013 22.0 1.9 20 1-20 1-20 (75)
49 PF04272 Phospholamban: Phosph 23.5 75 0.0016 19.4 1.9 14 5-18 35-48 (52)
50 TIGR03698 clan_AA_DTGF clan AA 23.4 1.2E+02 0.0026 21.5 3.4 24 46-69 2-29 (107)
51 TIGR01294 P_lamban phospholamb 22.9 76 0.0017 19.4 1.9 14 5-18 35-48 (52)
52 PTZ00165 aspartyl protease; Pr 20.7 1.2E+02 0.0027 27.5 3.7 31 42-72 305-343 (482)
No 1
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=1.3e-29 Score=197.61 Aligned_cols=132 Identities=33% Similarity=0.565 Sum_probs=110.2
Q ss_pred EEEEEEeCCCCceEEEEEECCCCeeeeec----CCCCCCCCcccccCCCccccccCcc--cC--CCCCcccCcccCCCCC
Q 029782 44 YVTQIKQRTPLVPVKLVVHLGGNLLWVDC----EKGYVSSTNKTARCGSAQCHLIGLV--AC--GGGKCGDFPNNPISNT 115 (188)
Q Consensus 44 Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c----~~c~~Sst~~~~~C~s~~C~~~~~~--~c--~~~~c~~~~~y~~~g~ 115 (188)
|+++|.||||+|++.|++||||+++|++| -...+|+||++++|.++.|...+.. .| .++.|.|.+.|. +++
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~-~~s 79 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYG-DGS 79 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEET-TTE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecC-CCc
Confidence 89999999999999999999999999999 3347899999999999999876653 22 267899999995 899
Q ss_pred eEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCCchHHHHhhh
Q 029782 116 GTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAA 182 (188)
Q Consensus 116 ~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~S~~~Ql~~~ 182 (188)
.++|.+++|+++++..+++ ...++++.|||++... ++....+||||||++++||++||++.
T Consensus 80 ~~~G~l~~D~~~~~~~~~~----~~~~~~~~FGC~~~~~--g~~~~~~GilGLg~~~~Sl~sQl~~~ 140 (164)
T PF14543_consen 80 SSSGFLASDTLTFGSSSGG----SNSVPDFIFGCATSNS--GLFYGADGILGLGRGPLSLPSQLASS 140 (164)
T ss_dssp EEEEEEEEEEEEEEEESSS----SEEEEEEEEEEE-GGG--TSSTTEEEEEE-SSSTTSHHHHHHHH
T ss_pred cccCceEEEEEEecCCCCC----CceeeeEEEEeeeccc--cCCcCCCcccccCCCcccHHHHHHHh
Confidence 9999999999999986422 2678899999999984 56569999999999999999999765
No 2
>PLN03146 aspartyl protease family protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=216.30 Aligned_cols=137 Identities=28% Similarity=0.499 Sum_probs=115.0
Q ss_pred CCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCC-------------CCCCCcccccCCCccccccCcc-cCC-CCCc
Q 029782 40 AVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKG-------------YVSSTNKTARCGSAQCHLIGLV-ACG-GGKC 104 (188)
Q Consensus 40 ~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c-------------~~Sst~~~~~C~s~~C~~~~~~-~c~-~~~c 104 (188)
.+++|+++|.||||||++.|++||||+++|++|.+| .+|+||+.++|.++.|...+.. .|. ++.|
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c 160 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTC 160 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCC
Confidence 578999999999999999999999999999999876 3889999999999999865543 364 4579
Q ss_pred ccCcccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCCchHHHHhhh
Q 029782 105 GDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAA 182 (188)
Q Consensus 105 ~~~~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~S~~~Ql~~~ 182 (188)
.|.+.|+ +|+.+.|.+++|+|++++..+ +.+.++++.|||++...+ .+....+||||||++++|+++||...
T Consensus 161 ~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~----~~~~v~~~~FGc~~~~~g-~f~~~~~GilGLG~~~~Sl~sql~~~ 232 (431)
T PLN03146 161 TYSYSYG-DGSFTKGNLAVETLTIGSTSG----RPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQLGSS 232 (431)
T ss_pred eeEEEeC-CCCceeeEEEEEEEEeccCCC----CcceeCCEEEeCCCCCCC-CccCCCceeEecCCCCccHHHHhhHh
Confidence 9999995 888889999999999987431 235789999999998742 23236899999999999999999864
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=210.17 Aligned_cols=141 Identities=27% Similarity=0.396 Sum_probs=120.1
Q ss_pred CCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCC--------------CCCCCcccccCCCccccccCcccCCCCCc
Q 029782 39 AAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKG--------------YVSSTNKTARCGSAQCHLIGLVACGGGKC 104 (188)
Q Consensus 39 ~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c--------------~~Sst~~~~~C~s~~C~~~~~~~c~~~~c 104 (188)
..+++|+++|.||||||++.|++||||+++||+|.+| ..|+||+.+.|.++.|.......+.++.|
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C 121 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSC 121 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcC
Confidence 3678999999999999999999999999999998776 26788999999999998776654458899
Q ss_pred ccCcccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCC-CCcceEEeeCCCCCchHHHHhhhc
Q 029782 105 GDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLA-PGVTGIAALGRTKTALPLQLAAAF 183 (188)
Q Consensus 105 ~~~~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~-~~~dGIlGLg~~~~S~~~Ql~~~~ 183 (188)
.|.+.|+ +++.++|.+++|+|++++.+ .+..++++|||+....+.... .+.|||||||++++|+++|+.+.+
T Consensus 122 ~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~ 194 (398)
T KOG1339|consen 122 PYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFY 194 (398)
T ss_pred ceEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCCccceeeccccc
Confidence 9999995 88899999999999999842 246678999999998643111 578999999999999999999887
Q ss_pred CCC
Q 029782 184 SLN 186 (188)
Q Consensus 184 ~~~ 186 (188)
+..
T Consensus 195 ~~~ 197 (398)
T KOG1339|consen 195 NAI 197 (398)
T ss_pred CCc
Confidence 654
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.92 E-value=7.1e-25 Score=190.26 Aligned_cols=134 Identities=43% Similarity=0.808 Sum_probs=106.9
Q ss_pred eCCCCce-EEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcc------------cCCCCCcccCcccCCCCCe
Q 029782 50 QRTPLVP-VKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLV------------ACGGGKCGDFPNNPISNTG 116 (188)
Q Consensus 50 iGTPpq~-~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~------------~c~~~~c~~~~~y~~~g~~ 116 (188)
+|||... +.|++||||+++|++|++|. |+||+.++|.++.|+.++.. .|.++.|.|......+|+.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~-sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGH-SSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCC-cCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5888888 99999999999999999975 56999999999999866533 4556679886541137778
Q ss_pred EEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCCchHHHHhhhcCC
Q 029782 117 TIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAAFSL 185 (188)
Q Consensus 117 ~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~S~~~Ql~~~~~~ 185 (188)
++|++++|+++++..++.... .+.++++.|||++...+.++....|||||||++++|+++||...++.
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~ 148 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGV 148 (362)
T ss_pred eeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCC
Confidence 999999999999875443222 24688999999988643355567999999999999999999976653
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=99.90 E-value=1.8e-23 Score=178.62 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=100.6
Q ss_pred ceEEEEEEeCCCCceEEEEEECCCCeeeeecCCC-------------CCCCCcccccCCCccccccCcccCCCCCcccCc
Q 029782 42 FQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKG-------------YVSSTNKTARCGSAQCHLIGLVACGGGKCGDFP 108 (188)
Q Consensus 42 ~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c-------------~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~ 108 (188)
+.|+++|.||||+|++.|++||||+++|++|..| .+|+|++.+.|.+..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 5899999999999999999999999999998876 267889999999998843 2346677899999
Q ss_pred ccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCCc
Q 029782 109 NNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTA 174 (188)
Q Consensus 109 ~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~S 174 (188)
.|+ +|+.+.|.+++|+|+|+.....+ ......++.|||+............+||||||+++.+
T Consensus 80 ~Y~-~gs~~~G~~~~D~v~lg~~~~~~--~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~ 142 (326)
T cd06096 80 SYS-EGSSISGFYFSDFVSFESYLNSN--SEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNN 142 (326)
T ss_pred EEC-CCCceeeEEEEEEEEeccCCCCc--cccccccEEeccCccccCcccccccceEEEccCCccc
Confidence 984 88789999999999998752111 0011235799999887432233578999999998753
No 6
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=99.89 E-value=1.9e-22 Score=168.35 Aligned_cols=112 Identities=30% Similarity=0.520 Sum_probs=90.1
Q ss_pred ceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEEE
Q 029782 42 FQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGDI 121 (188)
Q Consensus 42 ~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~l 121 (188)
++|+++|.||||||++.|++||||+++|++|+. +|. .| .|.|.+.|. +++.++|.+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~----------~c~--~c-----------~c~~~i~Yg-d~~~~~G~~ 56 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDA----------PCT--GC-----------QCDYEIEYA-DGGSSMGVL 56 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCC----------CCC--CC-----------cCccEeEeC-CCCceEEEE
Confidence 479999999999999999999999999999841 231 12 467888884 788999999
Q ss_pred EEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCC--CCCCcceEEeeCCCCCchHHHHhhh
Q 029782 122 RIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRG--LAPGVTGIAALGRTKTALPLQLAAA 182 (188)
Q Consensus 122 ~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~--~~~~~dGIlGLg~~~~S~~~Ql~~~ 182 (188)
++|+|+++..++. ..++++.|||+....... .....|||||||++++++++||...
T Consensus 57 ~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~ 114 (273)
T cd05475 57 VTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQ 114 (273)
T ss_pred EEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhc
Confidence 9999999764322 356889999998753221 2357899999999999999999865
No 7
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.88 E-value=1.4e-22 Score=170.81 Aligned_cols=101 Identities=34% Similarity=0.586 Sum_probs=86.5
Q ss_pred eEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEEEE
Q 029782 43 QYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGDIR 122 (188)
Q Consensus 43 ~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~l~ 122 (188)
+|+++|.||||||++.|++||||+++|++|.+| |.|.+.|. +|+.++|.++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------~~~~i~Yg-~Gs~~~G~~~ 51 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------CLYQVSYG-DGSYTTGDLA 51 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------CeeeeEeC-CCceEEEEEE
Confidence 599999999999999999999999999998543 46788884 8888899999
Q ss_pred EEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCCchHHHHhhh
Q 029782 123 IDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAA 182 (188)
Q Consensus 123 ~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~S~~~Ql~~~ 182 (188)
+|++++++. ..++++.|||++... +.....+||||||++.+|+++|+...
T Consensus 52 ~D~v~ig~~--------~~~~~~~Fg~~~~~~--~~~~~~~GilGLg~~~~s~~~ql~~~ 101 (299)
T cd05472 52 TDTLTLGSS--------DVVPGFAFGCGHDNE--GLFGGAAGLLGLGRGKLSLPSQTASS 101 (299)
T ss_pred EEEEEeCCC--------CccCCEEEECCccCC--CccCCCCEEEECCCCcchHHHHhhHh
Confidence 999999873 157889999998774 33347899999999999999999764
No 8
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=99.86 E-value=2.8e-21 Score=164.72 Aligned_cols=119 Identities=19% Similarity=0.161 Sum_probs=89.6
Q ss_pred cCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccCcccC
Q 029782 38 NAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDFPNNP 111 (188)
Q Consensus 38 ~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~~~y~ 111 (188)
|+.+.+|+++|.||||||++.|++||||+++||+|..|... +..|..++.+++. ...|.|.+.|.
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg 71 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLL---------DIACWLHHKYNSSKSSTYVKNGTEFAIQYG 71 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCC---------CccccCcCcCCcccCcceeeCCcEEEEEEC
Confidence 35688999999999999999999999999999998777421 1234333333221 23578888874
Q ss_pred CCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCchH
Q 029782 112 ISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTALP 176 (188)
Q Consensus 112 ~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S~~ 176 (188)
+| ++.|.+++|+|++++. .++++.|||++......+ ....+||||||++.++..
T Consensus 72 -~G-~~~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~ 126 (325)
T cd05490 72 -SG-SLSGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVD 126 (325)
T ss_pred -Cc-EEEEEEeeeEEEECCE---------EEcCEEEEEEeeccCCcccceeeeEEEecCCcccccc
Confidence 66 5799999999999873 788999999987643222 246899999999877643
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=99.85 E-value=4.1e-21 Score=172.15 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=87.8
Q ss_pred EeeEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC---------CC
Q 029782 32 VLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG---------GG 102 (188)
Q Consensus 32 ~~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~---------~~ 102 (188)
..||.+ +.+.+|+++|.||||||++.|++||||+++||+|..| .+..|..++.+++. ++
T Consensus 110 ~~~l~n-~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C-----------~~~~C~~~~~yd~s~SSTy~~~~~~ 177 (482)
T PTZ00165 110 QQDLLN-FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKEC-----------KSGGCAPHRKFDPKKSSTYTKLKLG 177 (482)
T ss_pred ceeccc-ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhc-----------CcccccccCCCCccccCCcEecCCC
Confidence 455554 6799999999999999999999999999999998655 23334433333221 11
Q ss_pred --CcccCcccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCc
Q 029782 103 --KCGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTA 174 (188)
Q Consensus 103 --~c~~~~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S 174 (188)
...+.+.| +.++..|.+++|+|++++ +.++++.||+++......+ ..+.|||||||++.++
T Consensus 178 ~~~~~~~i~Y--GsGs~~G~l~~DtV~ig~---------l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s 241 (482)
T PTZ00165 178 DESAETYIQY--GTGECVLALGKDTVKIGG---------LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKD 241 (482)
T ss_pred CccceEEEEe--CCCcEEEEEEEEEEEECC---------EEEccEEEEEEEeccccccccccccceeecCCCccc
Confidence 11244565 444678999999999987 4789999999998643222 2468999999998763
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=99.85 E-value=3.5e-21 Score=163.99 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=93.7
Q ss_pred eeEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCccc
Q 029782 33 LPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGD 106 (188)
Q Consensus 33 ~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~ 106 (188)
+||.+ +.+.+|+++|.||||+|++.|++||||+++||+|..| .+..|..++.++++ .+.|.|
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C-----------~~~~C~~~~~y~~~~Sst~~~~~~~~ 68 (320)
T cd05488 1 VPLTN-YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKC-----------GSIACFLHSKYDSSASSTYKANGTEF 68 (320)
T ss_pred Ccccc-cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCC-----------CCcccCCcceECCCCCcceeeCCCEE
Confidence 35554 4578899999999999999999999999999998655 33345444433332 346788
Q ss_pred CcccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCchHHH
Q 029782 107 FPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTALPLQ 178 (188)
Q Consensus 107 ~~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S~~~Q 178 (188)
.+.|. +| ++.|.+++|++++++ +.++++.|||++...+..+ ....|||||||+++.+.+.+
T Consensus 69 ~~~y~-~g-~~~G~~~~D~v~ig~---------~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~ 130 (320)
T cd05488 69 KIQYG-SG-SLEGFVSQDTLSIGD---------LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKI 130 (320)
T ss_pred EEEEC-Cc-eEEEEEEEeEEEECC---------EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCC
Confidence 88873 55 589999999999987 3778999999987632222 24689999999999887654
No 11
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=99.85 E-value=1.2e-20 Score=160.39 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=93.7
Q ss_pred eEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccC
Q 029782 34 PVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDF 107 (188)
Q Consensus 34 Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~ 107 (188)
||.+ ..+.+|+++|.||||+|++.|++||||+++|++|..|. ...|..++.+++. ...|.|.
T Consensus 2 ~l~n-~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-----------~~~c~~~~~f~~~~Sst~~~~~~~~~ 69 (317)
T cd05478 2 PLTN-YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-----------SQACSNHNRFNPRQSSTYQSTGQPLS 69 (317)
T ss_pred cccc-ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-----------cccccccCcCCCCCCcceeeCCcEEE
Confidence 5555 45899999999999999999999999999999987663 2234333333321 2346777
Q ss_pred cccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCc------hHHHHh
Q 029782 108 PNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTA------LPLQLA 180 (188)
Q Consensus 108 ~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S------~~~Ql~ 180 (188)
+.|+ +|+ +.|.+++|++++++. .++++.|||++......+ ....|||||||++.++ +..||.
T Consensus 70 ~~yg-~gs-~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 138 (317)
T cd05478 70 IQYG-TGS-MTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMM 138 (317)
T ss_pred EEEC-Cce-EEEEEeeeEEEECCE---------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHH
Confidence 7773 554 799999999999873 788999999987643212 2358999999997654 677776
Q ss_pred hh
Q 029782 181 AA 182 (188)
Q Consensus 181 ~~ 182 (188)
++
T Consensus 139 ~~ 140 (317)
T cd05478 139 SQ 140 (317)
T ss_pred hC
Confidence 54
No 12
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=99.85 E-value=2e-20 Score=159.00 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=92.3
Q ss_pred CceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccCcccCCCC
Q 029782 41 VFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDFPNNPISN 114 (188)
Q Consensus 41 ~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~~~y~~~g 114 (188)
|..|+++|.||||||++.|++||||+++|++|..| ....|..++.+++. ...|.|++.|+ +|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C-----------~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg-~G 68 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC-----------QSQACTNHTKFNPSQSSTYSTNGETFSLQYG-SG 68 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCC-----------CCccccccCCCCcccCCCceECCcEEEEEEC-Cc
Confidence 56899999999999999999999999999998755 33345444444332 34688988884 66
Q ss_pred CeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCC------CchHHHHhhh
Q 029782 115 TGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTK------TALPLQLAAA 182 (188)
Q Consensus 115 ~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~------~S~~~Ql~~~ 182 (188)
++.|.+++|++++++ +.++++.|||++...+..+ ....+||||||++. .+++.||...
T Consensus 69 -s~~G~~~~D~i~~g~---------~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 69 -SLTGIFGYDTVTVQG---------IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred -EEEEEEEeeEEEECC---------EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 479999999999987 3788999999998643222 34679999999853 4577788754
No 13
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.84 E-value=6.5e-21 Score=158.28 Aligned_cols=100 Identities=30% Similarity=0.543 Sum_probs=85.8
Q ss_pred eEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEEEE
Q 029782 43 QYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGDIR 122 (188)
Q Consensus 43 ~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~l~ 122 (188)
+|+++|.||||||++.|++||||+++|++| |.|.+.|. +++.++|.++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------~~~~~~Y~-dg~~~~G~~~ 48 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------CSYEYSYG-DGSSTSGVLA 48 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-------------------------------CceEeEeC-CCceeeeeEE
Confidence 599999999999999999999999999985 34667774 7889999999
Q ss_pred EEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCCchHHHHhhh
Q 029782 123 IDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKTALPLQLAAA 182 (188)
Q Consensus 123 ~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~S~~~Ql~~~ 182 (188)
+|++++++.+ ..++++.|||++.... ......+||||||+...|+++||...
T Consensus 49 ~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~ 100 (265)
T cd05476 49 TETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGST 100 (265)
T ss_pred EEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhcc
Confidence 9999999741 2578899999998743 33457999999999999999999864
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=99.84 E-value=3.1e-20 Score=158.93 Aligned_cols=128 Identities=21% Similarity=0.193 Sum_probs=94.7
Q ss_pred eEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccC
Q 029782 34 PVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDF 107 (188)
Q Consensus 34 Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~ 107 (188)
||++ ..+.+|+++|.||||+|++.|++||||+++|++|..|... ...|..++.+++. ...|.|.
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~c~~~~~y~~~~Sst~~~~~~~~~ 72 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWT---------NIACLLHNKYDSTKSSTYKKNGTEFA 72 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCC---------CccccCCCeECCcCCCCeEECCeEEE
Confidence 4444 6789999999999999999999999999999999877321 1234333333331 3467888
Q ss_pred cccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCch------HHHHh
Q 029782 108 PNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTAL------PLQLA 180 (188)
Q Consensus 108 ~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S~------~~Ql~ 180 (188)
+.|. +|+ +.|.+++|++++++. .++++.|||+..+.+..+ ..+.+||||||++.+|. ..||.
T Consensus 73 i~Y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~ 141 (329)
T cd05485 73 IQYG-SGS-LSGFLSTDTVSVGGV---------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMV 141 (329)
T ss_pred EEEC-Cce-EEEEEecCcEEECCE---------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHH
Confidence 8874 664 899999999999873 678999999987642222 34689999999988774 35665
Q ss_pred hh
Q 029782 181 AA 182 (188)
Q Consensus 181 ~~ 182 (188)
++
T Consensus 142 ~q 143 (329)
T cd05485 142 NQ 143 (329)
T ss_pred hC
Confidence 43
No 15
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=99.83 E-value=3.4e-20 Score=157.58 Aligned_cols=110 Identities=23% Similarity=0.206 Sum_probs=84.7
Q ss_pred EEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccCcccCCCCCeE
Q 029782 44 YVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDFPNNPISNTGT 117 (188)
Q Consensus 44 Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~~~y~~~g~~~ 117 (188)
|+++|+||||||++.|++||||+++||+|..| .+..|..++.+++. +..|.|.+.|+ +| .+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C-----------~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg-~g-~~ 67 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYC-----------TSQACTKHNRFQPSESSTYVSNGEAFSIQYG-TG-SL 67 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCC-----------CCcccCccceECCCCCcccccCCcEEEEEeC-Cc-EE
Confidence 89999999999999999999999999998655 33345444433332 34578888874 55 58
Q ss_pred EEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCch
Q 029782 118 IGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTAL 175 (188)
Q Consensus 118 ~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S~ 175 (188)
.|.+++|++++++ +.++++.|||+..+....+ ....|||||||++.++.
T Consensus 68 ~G~~~~D~v~ig~---------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~ 117 (316)
T cd05486 68 TGIIGIDQVTVEG---------ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAV 117 (316)
T ss_pred EEEeeecEEEECC---------EEEcCEEEEEeeccCcccccccccceEeccCchhhcc
Confidence 9999999999987 3788999999877643223 24689999999987764
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=99.83 E-value=4.7e-20 Score=156.96 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=88.4
Q ss_pred eEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccC
Q 029782 34 PVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDF 107 (188)
Q Consensus 34 Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~ 107 (188)
||.+ ..+.+|+++|.||||||++.|++||||+++||+|..|.. +..|..++.+++. .....+.
T Consensus 2 ~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~----------~~~C~~~~~y~~~~SsT~~~~~~~~~ 70 (317)
T cd06098 2 ALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYKSSKSSTYKKNGTSAS 70 (317)
T ss_pred cccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC----------CccccccCcCCcccCCCcccCCCEEE
Confidence 4444 678999999999999999999999999999999977642 1234433333331 1233455
Q ss_pred cccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCC-CCCcceEEeeCCCCCch
Q 029782 108 PNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGL-APGVTGIAALGRTKTAL 175 (188)
Q Consensus 108 ~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~-~~~~dGIlGLg~~~~S~ 175 (188)
+.|+ +| .+.|.+++|+|++++. .++++.||+++......+ ....+||||||++.++.
T Consensus 71 i~Yg-~G-~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~ 128 (317)
T cd06098 71 IQYG-TG-SISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISV 128 (317)
T ss_pred EEcC-Cc-eEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccccceeccccccchhh
Confidence 6663 44 5799999999999873 788999999987642222 24689999999987764
No 17
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.83 E-value=9.9e-20 Score=150.48 Aligned_cols=127 Identities=22% Similarity=0.257 Sum_probs=93.8
Q ss_pred EEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEEEEE
Q 029782 44 YVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGDIRI 123 (188)
Q Consensus 44 Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~l~~ 123 (188)
|+++|.||||+|++.|++||||+++|++|..|..........+ .+.......|.+..|.|.+.|. + +.+.|.+++
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~Y~-~-g~~~g~~~~ 75 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRF---KYDSSKSSTYKDTGCTFSITYG-D-GSVTGGLGT 75 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCC---ccCccCCceeecCCCEEEEEEC-C-CeEEEEEEE
Confidence 7899999999999999999999999999987743211000000 0000111122256799998873 5 578899999
Q ss_pred EEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCC------CchHHHHhhhcC
Q 029782 124 DVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTK------TALPLQLAAAFS 184 (188)
Q Consensus 124 Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~------~S~~~Ql~~~~~ 184 (188)
|++++++. .++++.|||++...........+||||||++. .+++.||.....
T Consensus 76 D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 76 DTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred eEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 99999984 57889999999874322346799999999998 899999987644
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=99.81 E-value=2.2e-19 Score=159.90 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=93.1
Q ss_pred CCCCceEeeEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC-----
Q 029782 26 FRPKALVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG----- 100 (188)
Q Consensus 26 ~~~~~~~~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~----- 100 (188)
.....-.+||.. ..+.+|+++|.||||||++.|++||||+++||+|..| .+..|..++.++++
T Consensus 123 ~~~~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C-----------~~~~C~~~~~yd~s~SsT~ 190 (453)
T PTZ00147 123 LGSEFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKC-----------TTEGCETKNLYDSSKSKTY 190 (453)
T ss_pred ccCCCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCC-----------CcccccCCCccCCccCcce
Confidence 344567778765 4578999999999999999999999999999998765 23345544444432
Q ss_pred -CCCcccCcccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccC--C-CCCCcceEEeeCCCCCch
Q 029782 101 -GGKCGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLR--G-LAPGVTGIAALGRTKTAL 175 (188)
Q Consensus 101 -~~~c~~~~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~--~-~~~~~dGIlGLg~~~~S~ 175 (188)
...+.|.+.|+ +| .++|.+++|+|++++. .++ ..|+|+...... . .....|||||||++.+|.
T Consensus 191 ~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~ 257 (453)
T PTZ00147 191 EKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSI 257 (453)
T ss_pred EECCCEEEEEeC-CC-CEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCcccccccccccceecccCCcccc
Confidence 23567888874 66 5899999999999874 556 478888765321 1 123689999999988764
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=99.81 E-value=1.1e-19 Score=151.74 Aligned_cols=111 Identities=19% Similarity=0.131 Sum_probs=84.1
Q ss_pred EEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC-------CCCcccCcccCCCCCe
Q 029782 44 YVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG-------GGKCGDFPNNPISNTG 116 (188)
Q Consensus 44 Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~-------~~~c~~~~~y~~~g~~ 116 (188)
|+++|.||||||++.|++||||+++|++|+.|.. | .|..++.+++. ...|.|.+.|. +|+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~--------~---~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~-~G~~ 68 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPA--------A---QQGGHKLYDPSKSSTAKLLPGATWSISYG-DGSS 68 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCc--------h---hhccCCcCCCccCccceecCCcEEEEEeC-CCCe
Confidence 7999999999999999999999999999987632 1 11111112221 13478888884 7877
Q ss_pred EEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCC-CCCCcceEEeeCCCCCch
Q 029782 117 TIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRG-LAPGVTGIAALGRTKTAL 175 (188)
Q Consensus 117 ~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~-~~~~~dGIlGLg~~~~S~ 175 (188)
+.|.+++|+|++++. .++++.|||++...... .....+||||||++.++.
T Consensus 69 ~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~ 119 (278)
T cd06097 69 ASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINT 119 (278)
T ss_pred EEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccc
Confidence 999999999999874 68899999998863211 225799999999987654
No 20
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.81 E-value=3.5e-19 Score=128.77 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=74.9
Q ss_pred EEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccC----CCCCcccCcccCCCCCeEEEEE
Q 029782 46 TQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVAC----GGGKCGDFPNNPISNTGTIGDI 121 (188)
Q Consensus 46 ~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c----~~~~c~~~~~y~~~g~~~~G~l 121 (188)
++|.||||||++.|++||||+++|++|+.|.. |....++......+ ....|.|.+.|. +| .+.|.+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~--------~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~-~g-~~~g~~ 70 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQS--------LAIYSHSSYDDPSASSTYSDNGCTFSITYG-TG-SLSGGL 70 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCC--------cccccccccCCcCCCCCCCCCCcEEEEEeC-CC-eEEEEE
Confidence 47899999999999999999999999987632 11000111100011 135689988874 65 577999
Q ss_pred EEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCC-CCCCcceEEee
Q 029782 122 RIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRG-LAPGVTGIAAL 168 (188)
Q Consensus 122 ~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~-~~~~~dGIlGL 168 (188)
++|+|+++.. .++++.|||++...... .....+|||||
T Consensus 71 ~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 71 STDTVSIGDI---------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEEECCE---------EECCEEEEEEEecCCccccccccccccCC
Confidence 9999999874 68899999999885322 23578999997
No 21
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.80 E-value=8.5e-19 Score=156.00 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=93.9
Q ss_pred CceEeeEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CC
Q 029782 29 KALVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GG 102 (188)
Q Consensus 29 ~~~~~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~ 102 (188)
..-.+||.. +.+.+|+++|.||||+|++.|++||||+++||+|..| .+..|..++.++++ ..
T Consensus 125 ~~~~~~l~d-~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C-----------~~~~C~~~~~yd~s~SsT~~~~ 192 (450)
T PTZ00013 125 ENDVIELDD-VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKC-----------DSIGCSIKNLYDSSKSKSYEKD 192 (450)
T ss_pred CCCceeeec-cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccC-----------CccccccCCCccCccCcccccC
Confidence 344556654 4577999999999999999999999999999998755 33345544444442 23
Q ss_pred CcccCcccCCCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeeccc--CCC-CCCcceEEeeCCCCCc-----
Q 029782 103 KCGDFPNNPISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVL--RGL-APGVTGIAALGRTKTA----- 174 (188)
Q Consensus 103 ~c~~~~~y~~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~--~~~-~~~~dGIlGLg~~~~S----- 174 (188)
.|.+.+.|+ +| ++.|.+++|+|++++. .++ ..|+++..... ..+ ....|||||||++.++
T Consensus 193 ~~~~~i~YG-~G-sv~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 193 GTKVDITYG-SG-TVKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred CcEEEEEEC-Cc-eEEEEEEEEEEEECCE---------EEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 577888873 55 5899999999999873 555 47888765421 111 2368999999998776
Q ss_pred -hHHHHhhhc
Q 029782 175 -LPLQLAAAF 183 (188)
Q Consensus 175 -~~~Ql~~~~ 183 (188)
++.||....
T Consensus 261 p~~~~L~~qg 270 (450)
T PTZ00013 261 PIVVELKNQN 270 (450)
T ss_pred CHHHHHHhcc
Confidence 455665543
No 22
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=99.78 E-value=1.7e-18 Score=147.79 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=86.2
Q ss_pred cCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccCcccC
Q 029782 38 NAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDFPNNP 111 (188)
Q Consensus 38 ~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~~~y~ 111 (188)
|+.+.+|+++|.||||+|+++|++||||+++||+|..|... ...|..++.+++. ...|.|.+.|+
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg 73 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPL---------YTACVTHNLYDASDSSTYKENGTEFTIHYA 73 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCc---------chhhcccCcCCCCCCeeeeECCEEEEEEeC
Confidence 45689999999999999999999999999999997655321 1234444444432 24688888874
Q ss_pred CCCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCC-CCCCcceEEeeCCCCCc
Q 029782 112 ISNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRG-LAPGVTGIAALGRTKTA 174 (188)
Q Consensus 112 ~~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~-~~~~~dGIlGLg~~~~S 174 (188)
+| .+.|.+++|+|++++. .++ +.||++.+..... .....|||||||++..+
T Consensus 74 -~g-~~~G~~~~D~v~~g~~---------~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s 125 (326)
T cd05487 74 -SG-TVKGFLSQDIVTVGGI---------PVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQA 125 (326)
T ss_pred -Cc-eEEEEEeeeEEEECCE---------Eee-EEEEEEEeccCCccceeecceEEecCChhhc
Confidence 66 5899999999999874 343 6899998753211 22468999999998765
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.74 E-value=2e-17 Score=138.56 Aligned_cols=91 Identities=23% Similarity=0.355 Sum_probs=79.0
Q ss_pred eEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEEEE
Q 029782 43 QYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGDIR 122 (188)
Q Consensus 43 ~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~l~ 122 (188)
.|+++|.||||+|++.|++||||+++|++ .|.+.|. +|+.+.|.++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------------------------~~~~~Y~-~g~~~~G~~~ 47 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------------------------DFSISYG-DGTSASGTWG 47 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------eeEEEec-cCCcEEEEEE
Confidence 69999999999999999999999999997 2456664 7789999999
Q ss_pred EEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCCCCC-----------chHHHHhhh
Q 029782 123 IDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGRTKT-----------ALPLQLAAA 182 (188)
Q Consensus 123 ~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~~~~-----------S~~~Ql~~~ 182 (188)
+|++++++. .++++.|||++.. ...+||||||+++. +++.||...
T Consensus 48 ~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 48 TDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred EEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 999999874 6788999999974 25799999999887 688999754
No 24
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.73 E-value=2.2e-17 Score=143.01 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=75.5
Q ss_pred ceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCC-CCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEE
Q 029782 42 FQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYV-SSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGD 120 (188)
Q Consensus 42 ~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~-Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~ 120 (188)
..|+++|.||||+|++.|++||||+++||+|..|.. ...|++.. |.++ ....|.|.+.|+ +| +++|.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~--SsT~--------~~~~~~~~i~Yg-~G-s~~G~ 69 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFIHTYFHREL--SSTY--------RDLGKGVTVPYT-QG-SWEGE 69 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccccccCCchh--CcCc--------ccCCceEEEEEC-cc-eEEEE
Confidence 479999999999999999999999999999976521 11121111 1111 134578888884 66 57899
Q ss_pred EEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCC-CCcceEEeeCCCCCc
Q 029782 121 IRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLA-PGVTGIAALGRTKTA 174 (188)
Q Consensus 121 l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~-~~~dGIlGLg~~~~S 174 (188)
+++|+|++++.. ...+. +.|++........+. ...|||||||++.++
T Consensus 70 ~~~D~v~ig~~~------~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~ 117 (364)
T cd05473 70 LGTDLVSIPKGP------NVTFR-ANIAAITESENFFLNGSNWEGILGLAYAELA 117 (364)
T ss_pred EEEEEEEECCCC------ccceE-EeeEEEeccccceecccccceeeeecccccc
Confidence 999999997521 11222 234555443211111 257999999998874
No 25
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.69 E-value=7.9e-17 Score=135.47 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=87.1
Q ss_pred eEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCC------CCCcccCcccCCCCCe
Q 029782 43 QYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACG------GGKCGDFPNNPISNTG 116 (188)
Q Consensus 43 ~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~------~~~c~~~~~y~~~g~~ 116 (188)
+|+++|.||||+|++.|++||||+.+||++..|... . .|.....+++. +..+.+.+.|. +|.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~-----~-----~~~~~~~y~~~~S~t~~~~~~~~~~~y~-~g~- 68 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC-----S-----SCASSGFYNPSKSSTFSNQGKPFSISYG-DGS- 68 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH-----T-----HHCTSC-BBGGGSTTEEEEEEEEEEEET-TEE-
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc-----c-----ccccccccccccccccccceeeeeeecc-Ccc-
Confidence 699999999999999999999999999997665332 1 22222222221 22345677763 555
Q ss_pred EEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccC-CCCCCcceEEeeCCC-------CCchHHHHhhhcCCC
Q 029782 117 TIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLR-GLAPGVTGIAALGRT-------KTALPLQLAAAFSLN 186 (188)
Q Consensus 117 ~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~-~~~~~~dGIlGLg~~-------~~S~~~Ql~~~~~~~ 186 (188)
++|.+++|++.+++. .++++.||.+...... ......+||||||++ ..++..||..+..++
T Consensus 69 ~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~ 137 (317)
T PF00026_consen 69 VSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLIS 137 (317)
T ss_dssp EEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSS
T ss_pred cccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccc
Confidence 999999999999874 7788999999885321 123578999999974 356778888775544
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.67 E-value=0.00021 Score=49.35 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=55.5
Q ss_pred ceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCCCCCeEEEEE
Q 029782 42 FQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPISNTGTIGDI 121 (188)
Q Consensus 42 ~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~~g~~~~G~l 121 (188)
+.|++++.|+ .+++.+++|||++..|+.-+ ..+.... .. .......... .+|.......
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~------~~~~l~~-------~~-----~~~~~~~~~~-~~G~~~~~~~ 59 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEE------LAERLGL-------PL-----TLGGKVTVQT-ANGRVRAARV 59 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHH------HHHHcCC-------Cc-----cCCCcEEEEe-cCCCccceEE
Confidence 3689999999 68999999999999998621 0010100 00 0001122222 2444445555
Q ss_pred EEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCC
Q 029782 122 RIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGR 170 (188)
Q Consensus 122 ~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~ 170 (188)
..+.+++++. .++++.+...... .. +.+||||+.+
T Consensus 60 ~~~~i~ig~~---------~~~~~~~~v~d~~---~~--~~~gIlG~d~ 94 (96)
T cd05483 60 RLDSLQIGGI---------TLRNVPAVVLPGD---AL--GVDGLLGMDF 94 (96)
T ss_pred EcceEEECCc---------EEeccEEEEeCCc---cc--CCceEeChHH
Confidence 5778888773 5666565444332 11 5899999864
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.54 E-value=0.16 Score=37.42 Aligned_cols=102 Identities=8% Similarity=0.002 Sum_probs=58.9
Q ss_pred eeEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeeecCCCCCCCCcccccCCCccccccCcccCCCCCcccCcccCC
Q 029782 33 LPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVDCEKGYVSSTNKTARCGSAQCHLIGLVACGGGKCGDFPNNPI 112 (188)
Q Consensus 33 ~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~c~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~c~~~~~y~~ 112 (188)
+||..+ .++.|++++.|. .+++.+++|||++.+-+.-+. -+.+.-. . .+..-...+. ..
T Consensus 2 ~~i~~~-~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~------A~~Lgl~-------~----~~~~~~~~~~-ta 60 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVN--GRNVRFLVDTGATSVALNEED------AQRLGLD-------L----NRLGYTVTVS-TA 60 (121)
T ss_pred EEEEEc-CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHH------HHHcCCC-------c----ccCCceEEEE-eC
Confidence 566663 588999999997 468999999999987664210 0011100 0 0000011111 12
Q ss_pred CCCeEEEEEEEEEEEEeccCCCCCCCceeeCcEEEEeeeecccCCCCCCcceEEeeCC
Q 029782 113 SNTGTIGDIRIDVVSVQSTNGRNPGRGVTVPNFIFLCGSEFVLRGLAPGVTGIAALGR 170 (188)
Q Consensus 113 ~g~~~~G~l~~Dtv~l~~~~g~~~~~~v~~~~~~fGca~~~~~~~~~~~~dGIlGLg~ 170 (188)
+|........-|.+.++.. .++|+.+...... ...+|+||+.+
T Consensus 61 ~G~~~~~~~~l~~l~iG~~---------~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 61 NGQIKAARVTLDRVAIGGI---------VVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred CCcEEEEEEEeCEEEECCE---------EEeCcEEEEeCCC------cCCceEcCHHH
Confidence 4444445567788888874 6677776544322 12389999865
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=93.07 E-value=0.91 Score=30.39 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=17.3
Q ss_pred EEEeCCCCceEEEEEECCCCeeeee
Q 029782 47 QIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 47 ~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
++.|+ .+++.+++|||++...+.
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~ 24 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVIS 24 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEEC
Confidence 34554 478899999999977664
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=91.09 E-value=2.1 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCceEEEEEEeCCCCceEEEEEECCCCeeeee
Q 029782 40 AVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 40 ~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
.+..+++++.|+ .++..+++|||++..++.
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is 42 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMS 42 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeC
Confidence 356789999998 467899999999998874
No 30
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=84.27 E-value=1.4 Score=30.26 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCceEEEEEECCCCeeeee
Q 029782 44 YVTQIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 44 Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
|++++.|+ .+++.+.+||||+..++.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis 26 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVIS 26 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeC
Confidence 46777777 478899999999999885
No 31
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.49 E-value=5.4 Score=26.30 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=25.8
Q ss_pred CCceEEEEEEeCCCCceEEEEEECCCCeeeee
Q 029782 40 AVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 40 ~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
..+.+++++.||- +.+.+++|||++...+.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis 34 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFIS 34 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecC
Confidence 4678999999996 88999999999987765
No 32
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=62.05 E-value=13 Score=30.59 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=27.5
Q ss_pred EeeEEecCCCceEEEEE---EeCC---CCceEEEEEECCCCeeeeec
Q 029782 32 VLPVLKNAAVFQYVTQI---KQRT---PLVPVKLVVHLGGNLLWVDC 72 (188)
Q Consensus 32 ~~Pl~~~~~~~~Y~~~i---~iGT---Ppq~~~vvlDTGSs~~Wv~c 72 (188)
-.|+.+++....|.+++ +||- +.....+++|||++++.++-
T Consensus 147 ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~ 193 (273)
T cd05475 147 WTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNA 193 (273)
T ss_pred ecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCC
Confidence 35665543345677664 6763 23456799999999999874
No 33
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=60.68 E-value=15 Score=25.24 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=18.5
Q ss_pred EEEEEeCCCCceEEEEEECCCCeeeee
Q 029782 45 VTQIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 45 ~~~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
+.+|.+. .+++.+++|||++..-++
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~ 31 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIIS 31 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEES
T ss_pred eEEEeEC--CEEEEEEEecCCCcceec
Confidence 3445555 358999999999987775
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.50 E-value=56 Score=26.57 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=32.9
Q ss_pred CCCCceEeeEEecCCCceEEEEEEeCCCCceEEEEEECCCCeeeee
Q 029782 26 FRPKALVLPVLKNAAVFQYVTQIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 26 ~~~~~~~~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
.......+-|+++ .++-|.++..|- .|++...+|||.+..-++
T Consensus 89 ~~~g~~~v~Lak~-~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~ 131 (215)
T COG3577 89 VGDGYQEVSLAKS-RDGHFEANGRVN--GKKVDFLVDTGATSVALN 131 (215)
T ss_pred CCCCceEEEEEec-CCCcEEEEEEEC--CEEEEEEEecCcceeecC
Confidence 3444556677773 478899988876 699999999999987765
No 35
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=50.90 E-value=11 Score=30.63 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=13.7
Q ss_pred CcchhhHHHHHHHHHHh
Q 029782 1 MALSYKFLLLCFLLIFV 17 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (188)
|||+-|+.+|+||++.|
T Consensus 128 ~amLIClIIIAVLfLIC 144 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLIC 144 (227)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 78999999998876543
No 36
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=48.44 E-value=46 Score=24.70 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhcccccccCCCCCceEeeEEecCCCceEEEEEEeCCCCceEEEEE
Q 029782 5 YKFLLLCFLLIFVSPAIAQTSFRPKALVLPVLKNAAVFQYVTQIKQRTPLVPVKLVV 61 (188)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~Y~~~i~iGTPpq~~~vvl 61 (188)
|..++++..++++..+.++.....+....|++- +++=.=|.|...+.+.+
T Consensus 14 y~~~i~~l~i~~l~~c~~~~es~~~k~~~pVT~-------hVen~e~~pi~~~ev~l 63 (131)
T PF10794_consen 14 YSKLIWFLVIIVLCGCIANNESAASKVVNPVTF-------HVENAEGQPIKDFEVTL 63 (131)
T ss_pred hhhHHHHHHHHHHhcccccchhhhceecccEEE-------EEecCCCCcccceEEEE
Confidence 556666666666777777776677777778764 33334467777776665
No 37
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=47.71 E-value=27 Score=24.24 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=17.9
Q ss_pred EEeCCCCceEEEEEECCCCeeeee
Q 029782 48 IKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 48 i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
+.|+ .|.+.+.+|||++.+-+.
T Consensus 3 ~~i~--g~~~~~llDTGAd~Tvi~ 24 (87)
T cd05482 3 LYIN--GKLFEGLLDTGADVSIIA 24 (87)
T ss_pred EEEC--CEEEEEEEccCCCCeEEc
Confidence 4444 688999999999998775
No 38
>KOG4084 consensus Transmembrane protein [General function prediction only]
Probab=44.03 E-value=64 Score=24.37 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhccccccc
Q 029782 5 YKFLLLCFLLIFVSPAIAQT 24 (188)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (188)
+...+++.|++|+-..-|+.
T Consensus 14 ~al~~~~ilvlf~e~~~a~~ 33 (149)
T KOG4084|consen 14 HALWLLCILVLFLEQAEAPV 33 (149)
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 34567788888887665544
No 39
>PLN03146 aspartyl protease family protein; Provisional
Probab=42.20 E-value=33 Score=30.62 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=27.9
Q ss_pred eEeeEEecCCCceEEEEE---EeCC-----CCce------EEEEEECCCCeeeeec
Q 029782 31 LVLPVLKNAAVFQYVTQI---KQRT-----PLVP------VKLVVHLGGNLLWVDC 72 (188)
Q Consensus 31 ~~~Pl~~~~~~~~Y~~~i---~iGT-----Ppq~------~~vvlDTGSs~~Wv~c 72 (188)
...||.++.....|++++ +||. |+.. -.+++|||+.+++++-
T Consensus 268 ~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 268 VSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred eEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 346776543356787775 6774 2221 2689999999999874
No 40
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.76 E-value=93 Score=25.11 Aligned_cols=48 Identities=10% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCCCceEeeEEecCC-CceEEEEEEeCCCCc--------eEEEEEECCCCeeeeec
Q 029782 25 SFRPKALVLPVLKNAA-VFQYVTQIKQRTPLV--------PVKLVVHLGGNLLWVDC 72 (188)
Q Consensus 25 ~~~~~~~~~Pl~~~~~-~~~Y~~~i~iGTPpq--------~~~vvlDTGSs~~Wv~c 72 (188)
-+-...+.++++.+++ ...-...+.-|+|-. .+.-|-|-.+..=||+.
T Consensus 26 ~YIsD~l~v~lRsGPg~~y~Iv~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~ 82 (206)
T PRK10884 26 RYVSDELNTYVRSGPGDQYRIVGTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPL 82 (206)
T ss_pred EEEEcceeEEEEcCCCCCCceEEEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEH
Confidence 3555678999999885 445667788888743 13334444555567763
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=41.56 E-value=29 Score=23.46 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.3
Q ss_pred CceEEEEEECCCCeeeee
Q 029782 54 LVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 54 pq~~~vvlDTGSs~~Wv~ 71 (188)
.+++..++|||++.+-+.
T Consensus 7 G~~~~fLvDTGA~~tii~ 24 (86)
T cd06095 7 GVPIVFLVDTGATHSVLK 24 (86)
T ss_pred CEEEEEEEECCCCeEEEC
Confidence 468899999999988775
No 42
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=37.62 E-value=49 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=18.9
Q ss_pred EEEeCCCCceEEEEEECCCCeeeee
Q 029782 47 QIKQRTPLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 47 ~i~iGTPpq~~~vvlDTGSs~~Wv~ 71 (188)
++.++.-..+..+++||||+...+.
T Consensus 36 ~v~l~~~~t~i~vLfDSGSPTSfIr 60 (177)
T PF12384_consen 36 IVQLNCKGTPIKVLFDSGSPTSFIR 60 (177)
T ss_pred EEEEeecCcEEEEEEeCCCccceee
Confidence 3444455677899999999998775
No 43
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=34.68 E-value=67 Score=25.83 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=27.9
Q ss_pred ceEeeEEecCCCceEEEEE---EeCC-----CCceEEEEEECCCCeeeeec
Q 029782 30 ALVLPVLKNAAVFQYVTQI---KQRT-----PLVPVKLVVHLGGNLLWVDC 72 (188)
Q Consensus 30 ~~~~Pl~~~~~~~~Y~~~i---~iGT-----Ppq~~~vvlDTGSs~~Wv~c 72 (188)
-.-.|+..+ ....|.+.+ .+|. ......+++|||++.+|++-
T Consensus 169 ~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~ 218 (283)
T cd05471 169 LTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPS 218 (283)
T ss_pred eEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCH
Confidence 344555542 255666654 5664 34677999999999999974
No 44
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=32.20 E-value=55 Score=27.55 Aligned_cols=30 Identities=10% Similarity=-0.112 Sum_probs=20.9
Q ss_pred ceEEEE---EEeCC-----CCceEEEEEECCCCeeeee
Q 029782 42 FQYVTQ---IKQRT-----PLVPVKLVVHLGGNLLWVD 71 (188)
Q Consensus 42 ~~Y~~~---i~iGT-----Ppq~~~vvlDTGSs~~Wv~ 71 (188)
..|.++ +.||. +.+...+++|||+++++++
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP 225 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGP 225 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCC
Confidence 455555 46664 2234679999999999987
No 45
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.37 E-value=30 Score=24.43 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.8
Q ss_pred HHhcccccc
Q 029782 15 IFVSPAIAQ 23 (188)
Q Consensus 15 ~~~~~~~~~ 23 (188)
|++++..||
T Consensus 17 LlisSevaa 25 (95)
T PF07172_consen 17 LLISSEVAA 25 (95)
T ss_pred HHHHhhhhh
Confidence 444444443
No 46
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=28.31 E-value=57 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=22.1
Q ss_pred ceEEEEE---EeCCC------CceEEEEEECCCCeeeeec
Q 029782 42 FQYVTQI---KQRTP------LVPVKLVVHLGGNLLWVDC 72 (188)
Q Consensus 42 ~~Y~~~i---~iGTP------pq~~~vvlDTGSs~~Wv~c 72 (188)
..|.+++ .+|.. .....+++|||+++++++-
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~ 247 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPE 247 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCH
Confidence 5666664 56643 2455789999999999873
No 47
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=1.2e+02 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=28.2
Q ss_pred ceEeeEEecCCCceEEEEE---EeCC----CCce-----EEEEEECCCCeeeeec
Q 029782 30 ALVLPVLKNAAVFQYVTQI---KQRT----PLVP-----VKLVVHLGGNLLWVDC 72 (188)
Q Consensus 30 ~~~~Pl~~~~~~~~Y~~~i---~iGT----Ppq~-----~~vvlDTGSs~~Wv~c 72 (188)
---+||..... ..|.+.+ .||- ++.. ..+++|||+++++++-
T Consensus 231 l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~ 284 (398)
T KOG1339|consen 231 LTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPT 284 (398)
T ss_pred eEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccH
Confidence 34578877444 4666654 5885 3322 4579999999999874
No 48
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.07 E-value=60 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.545 Sum_probs=14.9
Q ss_pred CcchhhHHHHHHHHHHhccc
Q 029782 1 MALSYKFLLLCFLLIFVSPA 20 (188)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (188)
|.+.+.+.-+++|++|+.|.
T Consensus 1 m~~~fl~~PliiF~ifVaPi 20 (75)
T PRK09458 1 MSALFLAIPLTIFVLFVAPI 20 (75)
T ss_pred CcchHHHHhHHHHHHHHHHH
Confidence 55666677778888888876
No 49
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=23.48 E-value=75 Score=19.38 Aligned_cols=14 Identities=36% Similarity=0.949 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHhc
Q 029782 5 YKFLLLCFLLIFVS 18 (188)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (188)
+|..++|.++++++
T Consensus 35 fclilicllli~ii 48 (52)
T PF04272_consen 35 FCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666543
No 50
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=23.44 E-value=1.2e+02 Score=21.46 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=17.3
Q ss_pred EEEEeCCCC----ceEEEEEECCCCeee
Q 029782 46 TQIKQRTPL----VPVKLVVHLGGNLLW 69 (188)
Q Consensus 46 ~~i~iGTPp----q~~~vvlDTGSs~~W 69 (188)
+++.+..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 566777763 257889999998653
No 51
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=22.94 E-value=76 Score=19.35 Aligned_cols=14 Identities=36% Similarity=0.949 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHhc
Q 029782 5 YKFLLLCFLLIFVS 18 (188)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (188)
++..++|.+++|++
T Consensus 35 f~lilicllli~ii 48 (52)
T TIGR01294 35 FCLILICLLLICII 48 (52)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666553
No 52
>PTZ00165 aspartyl protease; Provisional
Probab=20.67 E-value=1.2e+02 Score=27.55 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=21.6
Q ss_pred ceEEEE---EEeCC-----CCceEEEEEECCCCeeeeec
Q 029782 42 FQYVTQ---IKQRT-----PLVPVKLVVHLGGNLLWVDC 72 (188)
Q Consensus 42 ~~Y~~~---i~iGT-----Ppq~~~vvlDTGSs~~Wv~c 72 (188)
..|.++ |.||. +.....+++|||++++.++-
T Consensus 305 ~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~ 343 (482)
T PTZ00165 305 DYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPS 343 (482)
T ss_pred ceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCH
Confidence 455555 46763 13567899999999988863
Done!