BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029785
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 42 LPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNK 80
+P GTC + S +LG+P I EAA TK++ +DV K
Sbjct: 99 IPGGTCNDFSRTLGVPQNI-AEAAKLITKEHVKPVDVAK 136
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 42 LPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNK 80
+P GTC + S +LG+P I EAA TK++ +DV K
Sbjct: 95 IPGGTCNDFSRTLGVPQNI-AEAAKLITKEHVKPVDVAK 132
>pdb|2WMG|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Complex With The Lewisy Pentasaccharide
Blood Group Antigen
Length = 581
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 GLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNS 73
G G+A + + +N NI +QQ+ LP T SLSL L Y A K+N
Sbjct: 420 GDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTY-----AVVKENP 474
Query: 74 NSIDV 78
N++ +
Sbjct: 475 NNLHI 479
>pdb|2WMH|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
In Complex With The H-Disaccharide Blood Group Antigen
Length = 581
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 GLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNS 73
G G+A + + +N NI +QQ+ LP T SLSL L Y A K+N
Sbjct: 420 GDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTY-----AVVKENP 474
Query: 74 NSIDV 78
N++ +
Sbjct: 475 NNLHI 479
>pdb|2WMF|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Its Native Form
Length = 581
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 14 GLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNS 73
G G+A + + +N NI +QQ+ LP T SLSL L Y A K+N
Sbjct: 420 GDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTY-----AVVKENP 474
Query: 74 NSIDV 78
N++ +
Sbjct: 475 NNLHI 479
>pdb|1KI9|A Chain A, Adenylate Kinase From Methanococcus Thermolithotrophicus
pdb|1KI9|B Chain B, Adenylate Kinase From Methanococcus Thermolithotrophicus
pdb|1KI9|C Chain C, Adenylate Kinase From Methanococcus Thermolithotrophicus
Length = 192
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 37 HQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSI-----DVNKGYEESAAAGVA 91
H ++ PKG + P L + + E+ P+ + D + + AG+
Sbjct: 92 HSTIKTPKG--YLPGLPVWVLNELNPDIIIVVETSGDEILIRRLNDETRNRDLETTAGIE 149
Query: 92 EYQILNRQAS 101
E+QI+NR A+
Sbjct: 150 EHQIMNRAAA 159
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 72 NSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERD 121
+ NSI GYE GV Y + R H A + F+ + K +RD
Sbjct: 14 HRNSIQFTDGYEVKEDIGVGSYSVCKR--CIHKATNXEFAVKIIDKSKRD 61
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 72 NSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERD 121
+ NSI GYE GV Y + R H A + F+ + K +RD
Sbjct: 14 HRNSIQFTDGYEVKEDIGVGSYSVCKR--CIHKATNMEFAVKIIDKSKRD 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,773,823
Number of Sequences: 62578
Number of extensions: 163065
Number of successful extensions: 279
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)