Query 029785
Match_columns 188
No_of_seqs 115 out of 144
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0483 Transcription factor H 98.8 4.2E-09 9.2E-14 88.6 3.6 39 146-184 50-88 (198)
2 PF04618 HD-ZIP_N: HD-ZIP prot 98.1 6.5E-06 1.4E-10 64.6 6.0 36 75-115 72-107 (111)
3 PF00046 Homeobox: Homeobox do 96.5 0.0021 4.6E-08 41.9 2.6 35 148-182 2-36 (57)
4 cd00086 homeodomain Homeodomai 95.8 0.012 2.6E-07 37.7 3.3 37 148-184 2-38 (59)
5 smart00389 HOX Homeodomain. DN 95.3 0.023 5E-07 36.4 3.2 37 148-184 2-38 (56)
6 COG5576 Homeodomain-containing 90.2 0.33 7.2E-06 39.8 3.4 40 145-184 50-89 (156)
7 TIGR01565 homeo_ZF_HD homeobox 62.5 11 0.00023 26.7 3.2 37 148-184 3-43 (58)
8 PF12323 HTH_OrfB_IS605: Helix 57.5 8.1 0.00018 24.8 1.7 20 148-167 6-25 (46)
9 PF11304 DUF3106: Protein of u 54.5 12 0.00027 28.6 2.6 29 153-181 77-105 (107)
10 PF11304 DUF3106: Protein of u 49.8 16 0.00035 27.9 2.6 29 152-180 58-86 (107)
11 KOG0494 Transcription factor C 44.0 21 0.00046 33.1 2.8 29 153-181 148-176 (332)
12 KOG0842 Transcription factor t 43.0 27 0.0006 31.9 3.4 37 146-182 151-189 (307)
13 PF07813 LTXXQ: LTXXQ motif fa 34.9 33 0.00071 23.7 2.1 22 161-182 78-99 (100)
14 KOG4325 Uncharacterized conser 31.3 23 0.00051 30.9 1.0 31 146-181 166-196 (212)
15 PF11167 DUF2953: Protein of u 27.1 6 0.00013 26.2 -2.6 19 1-19 3-21 (53)
16 KOG0491 Transcription factor B 24.1 27 0.00059 30.4 0.2 38 147-184 99-138 (194)
17 TIGR03223 Phn_opern_protn puta 23.4 37 0.0008 29.8 0.8 29 146-174 140-176 (228)
18 PRK12750 cpxP periplasmic repr 22.3 59 0.0013 26.8 1.8 22 161-182 127-148 (170)
19 cd07321 Extradiol_Dioxygenase_ 21.6 69 0.0015 23.3 1.8 15 169-183 33-47 (77)
20 PF06299 DUF1045: Protein of u 21.6 43 0.00093 28.0 0.9 29 146-174 80-116 (160)
21 PF08438 MMR_HSR1_C: GTPase of 20.9 22 0.00048 27.9 -0.9 15 170-184 62-76 (109)
22 KOG0849 Transcription factor P 20.7 1.2E+02 0.0026 27.7 3.5 39 146-184 176-214 (354)
No 1
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=98.78 E-value=4.2e-09 Score=88.59 Aligned_cols=39 Identities=36% Similarity=0.362 Sum_probs=36.3
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..+||+|||+||..+||.+|+.|++|+|+||..||.-=|
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~Lg 88 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELG 88 (198)
T ss_pred cccccccccHHHHHHhHHhhccccccChHHHHHHHHhhC
Confidence 689999999999999999999999999999999996544
No 2
>PF04618 HD-ZIP_N: HD-ZIP protein N terminus; InterPro: IPR006712 Homeodomain leucine zipper (HDZip) genes encode putative transcription factors that are unique to plants. This observation suggests that homeobox-leucine zipper genes evolved after the divergence of plants and animals, perhaps to mediate specific regulatory events []. This domain is the N-terminal of plant homeobox-leucine zipper proteins. Its function is unknown.; GO: 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=98.12 E-value=6.5e-06 Score=64.56 Aligned_cols=36 Identities=33% Similarity=0.299 Sum_probs=24.6
Q ss_pred cccccccchhhhhhhhhhhhhcccccCCCCcccceeecCcc
Q 029785 75 SIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRV 115 (188)
Q Consensus 75 ~~~~~~~~~~~~~~~~~d~~d~~~~sSPnS~vS~SfS~~~~ 115 (188)
.|+||--+.- ..+|..+..+||||||||| |+|++|.
T Consensus 72 giDVNr~p~~----~~~d~eEe~gvSSPNStiS-S~sgkr~ 107 (111)
T PF04618_consen 72 GIDVNRLPST----VEADCEEEAGVSSPNSTIS-SVSGKRS 107 (111)
T ss_pred ceeccCCCcc----ccccccccccccCCCccce-ecccccc
Confidence 4677764331 1123445678999999999 8999776
No 3
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=96.54 E-value=0.0021 Score=41.85 Aligned_cols=35 Identities=31% Similarity=0.278 Sum_probs=32.8
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~ 182 (188)
|++-++|++|..+||+.|..+..++..+++.||.-
T Consensus 2 r~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~ 36 (57)
T PF00046_consen 2 RKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKE 36 (57)
T ss_dssp SSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhcccccccccccccc
Confidence 68889999999999999999999999999999864
No 4
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=95.81 E-value=0.012 Score=37.68 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=33.3
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+++-+++++|..+||..|..|...++++++.||.-=|
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~ 38 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELG 38 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHC
Confidence 5677899999999999999999999999999997544
No 5
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=95.29 E-value=0.023 Score=36.37 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=32.3
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+++-++|++|..+||..|..+...++.+++.||..=|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~ 38 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLG 38 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHC
Confidence 3455799999999999999999999999999997544
No 6
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=90.25 E-value=0.33 Score=39.77 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=36.1
Q ss_pred cccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 145 VNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
-..+|+.|+|.+|..+||..|+.-.+-+..-|..|+..-+
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~ln 89 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLN 89 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcC
Confidence 3679999999999999999999999999999999987544
No 7
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=62.55 E-value=11 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=30.1
Q ss_pred ccccccChHHHHHHHHhhhhccC----CChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHST----LNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~t----LnpkqK~~la~~~~ 184 (188)
|+.--+|.+|...||+.|....- +.....++||.-=|
T Consensus 3 R~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lg 43 (58)
T TIGR01565 3 RRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIG 43 (58)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhC
Confidence 45556999999999999998887 88888888876433
No 8
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=57.45 E-value=8.1 Score=24.80 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=16.6
Q ss_pred ccccccChHHHHHHHHhhhh
Q 029785 148 RKKLRLTKEQSALLEESFKQ 167 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~ 167 (188)
+=+|+.|++|...|++.|-.
T Consensus 6 k~rl~Pt~~Q~~~L~~~~~~ 25 (46)
T PF12323_consen 6 KYRLYPTKEQEEKLERWFGA 25 (46)
T ss_pred EEEEecCHHHHHHHHHHHHH
Confidence 34688899999999998864
No 9
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.51 E-value=12 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=19.1
Q ss_pred cChHHHHHHHHhhhhccCCChhhhhhhhc
Q 029785 153 LTKEQSALLEESFKQHSTLNPVIISLSLS 181 (188)
Q Consensus 153 LsKeQsa~LEesFk~H~tLnpkqK~~la~ 181 (188)
|+.+|...|=..|+..-.|+|.||++|++
T Consensus 77 Lpp~qR~~lr~~w~~yq~l~~eeR~~l~~ 105 (107)
T PF11304_consen 77 LPPEQRQALRARWEAYQQLPPEERQALRE 105 (107)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 56666666666666666666666666653
No 10
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=49.82 E-value=16 Score=27.93 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=25.8
Q ss_pred ccChHHHHHHHHhhhhccCCChhhhhhhh
Q 029785 152 RLTKEQSALLEESFKQHSTLNPVIISLSL 180 (188)
Q Consensus 152 RLsKeQsa~LEesFk~H~tLnpkqK~~la 180 (188)
.||.+|...+=+.|+.-..|.|.||++|.
T Consensus 58 ~LspeqR~~~R~~~~~~~~Lpp~qR~~lr 86 (107)
T PF11304_consen 58 ALSPEQRQQARENYQRFKQLPPEQRQALR 86 (107)
T ss_pred hCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 58999999999999999999999998764
No 11
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=44.02 E-value=21 Score=33.06 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=25.4
Q ss_pred cChHHHHHHHHhhhhccCCChhhhhhhhc
Q 029785 153 LTKEQSALLEESFKQHSTLNPVIISLSLS 181 (188)
Q Consensus 153 LsKeQsa~LEesFk~H~tLnpkqK~~la~ 181 (188)
+|.-|...||++||+-+--.-+-|+-||-
T Consensus 148 FT~~Qle~LEkaFkeaHYPDv~Are~la~ 176 (332)
T KOG0494|consen 148 FTSYQLEELEKAFKEAHYPDVYAREMLAD 176 (332)
T ss_pred hhHHHHHHHHHHHhhccCccHHHHHHHhh
Confidence 79999999999999998888888877764
No 12
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=43.00 E-value=27 Score=31.95 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=32.0
Q ss_pred ccccccc--cChHHHHHHHHhhhhccCCChhhhhhhhcc
Q 029785 146 NARKKLR--LTKEQSALLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 146 ~~RKKLR--LsKeQsa~LEesFk~H~tLnpkqK~~la~~ 182 (188)
..|||=| ||+.|--.||..||+---|+--.++.||+.
T Consensus 151 ~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~ 189 (307)
T KOG0842|consen 151 RKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASS 189 (307)
T ss_pred ccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHh
Confidence 3566655 899999999999999999999999999864
No 13
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=34.90 E-value=33 Score=23.72 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=15.0
Q ss_pred HHHhhhhccCCChhhhhhhhcc
Q 029785 161 LEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 161 LEesFk~H~tLnpkqK~~la~~ 182 (188)
++--...++.|||+||+.+..+
T Consensus 78 ~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 78 AKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHh
Confidence 3344456789999999988653
No 14
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.33 E-value=23 Score=30.92 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=23.7
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLS 181 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~ 181 (188)
+-+|||||+.+|...+ .---|||.||..+..
T Consensus 166 aLKKKiR~tEalQQki-----aagdln~~qkEkfeK 196 (212)
T KOG4325|consen 166 ALKKKIRLTEALQQKI-----AAGDLNPEQKEKFEK 196 (212)
T ss_pred HHHHHHHHHHHHHHHH-----hcccCCHHHHHHHHH
Confidence 4579999999887655 356799999987643
No 15
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=27.13 E-value=6 Score=26.19 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=15.5
Q ss_pred CCCCCCCCCcceeeecccc
Q 029785 1 MGFDDGCNTGLVLGLGFAS 19 (188)
Q Consensus 1 MGfdD~~NtGLvLgLGl~~ 19 (188)
+|++|.+.||++.|+--+.
T Consensus 3 ~G~~Daa~Tgi~~G~l~~~ 21 (53)
T PF11167_consen 3 IGLGDAADTGILYGLLWAI 21 (53)
T ss_pred eeccCHHHHHHHHHHHHHH
Confidence 5899999999988876554
No 16
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=24.06 E-value=27 Score=30.40 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.5
Q ss_pred cccccc--cChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLR--LTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLR--LsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|.|-| ++.-|-..||+.|...--|+--|.++||.|=+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~ 138 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALS 138 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhh
Confidence 344554 67789999999999999999999999998754
No 17
>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.
Probab=23.41 E-value=37 Score=29.75 Aligned_cols=29 Identities=45% Similarity=0.519 Sum_probs=25.4
Q ss_pred ccccccccChHHHHHHH--------HhhhhccCCChh
Q 029785 146 NARKKLRLTKEQSALLE--------ESFKQHSTLNPV 174 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LE--------esFk~H~tLnpk 174 (188)
..|++=+||..|.++|+ |.|+-|-||+-+
T Consensus 140 aRRr~~~Ls~~Q~~~L~~WGYPYV~deFrFHmTLTg~ 176 (228)
T TIGR03223 140 ARRRPDQLTPRQRALLERWGYPYVLEEFRFHMTLTGR 176 (228)
T ss_pred hhcCccCCCHHHHHHHHHcCCCceecceEEEEEecCC
Confidence 47889999999999998 579999999854
No 18
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.29 E-value=59 Score=26.83 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.9
Q ss_pred HHHhhhhccCCChhhhhhhhcc
Q 029785 161 LEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 161 LEesFk~H~tLnpkqK~~la~~ 182 (188)
++---+.++.|||+||..|+++
T Consensus 127 ~~~~~~~~~vLTpEQRak~~e~ 148 (170)
T PRK12750 127 LEKRHQMLSILTPEQKAKFQEL 148 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 3344556899999999999875
No 19
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=21.63 E-value=69 Score=23.26 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=11.2
Q ss_pred cCCChhhhhhhhccc
Q 029785 169 STLNPVIISLSLSID 183 (188)
Q Consensus 169 ~tLnpkqK~~la~~~ 183 (188)
.-|+++||++|.+-|
T Consensus 33 ~~Lt~eE~~al~~rD 47 (77)
T cd07321 33 YGLTPEEKAALLARD 47 (77)
T ss_pred cCCCHHHHHHHHcCC
Confidence 378888888877655
No 20
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=21.63 E-value=43 Score=27.96 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=25.5
Q ss_pred ccccccccChHHHHHHH--------HhhhhccCCChh
Q 029785 146 NARKKLRLTKEQSALLE--------ESFKQHSTLNPV 174 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LE--------esFk~H~tLnpk 174 (188)
..|++=+||..|.++|+ |.|+-|-||+-+
T Consensus 80 aRR~~~~Ls~~Q~~~L~rWGYPYV~deFRFHmTLTg~ 116 (160)
T PF06299_consen 80 ARRRPAGLSPRQRANLERWGYPYVMDEFRFHMTLTGR 116 (160)
T ss_pred hhcCcccCCHHHHHHHHHhCCCceeCcCEeeEEeCCC
Confidence 57888999999999998 579999999865
No 21
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=20.90 E-value=22 Score=27.88 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=3.6
Q ss_pred CCChhhhhhhhcccc
Q 029785 170 TLNPVIISLSLSIDG 184 (188)
Q Consensus 170 tLnpkqK~~la~~~~ 184 (188)
.|+++||.+|..|..
T Consensus 62 ~l~~~q~~~Le~I~~ 76 (109)
T PF08438_consen 62 KLSDKQKKALEKIRD 76 (109)
T ss_dssp ---------TTHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 466666666666655
No 22
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=20.68 E-value=1.2e+02 Score=27.70 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=28.4
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+|..++-+|...||+.|+.-..--=-.+..||.-.|
T Consensus 176 ~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~ 214 (354)
T KOG0849|consen 176 GRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETG 214 (354)
T ss_pred ccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhcc
Confidence 567789999999999999999766444445555554433
Done!