Query 029785
Match_columns 188
No_of_seqs 115 out of 144
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecc_A Homeobox and leucine zi 96.9 0.00074 2.5E-08 48.4 3.8 42 144-185 1-42 (76)
2 2e1o_A Homeobox protein PRH; D 96.4 0.0036 1.2E-07 42.1 4.0 39 146-184 7-45 (70)
3 2dmu_A Homeobox protein goosec 96.1 0.0046 1.6E-07 41.4 3.6 40 145-184 6-45 (70)
4 2da2_A Alpha-fetoprotein enhan 96.1 0.0062 2.1E-07 40.6 4.0 41 144-184 5-45 (70)
5 2h1k_A IPF-1, pancreatic and d 96.0 0.0043 1.5E-07 40.9 3.0 40 145-184 2-41 (63)
6 2da3_A Alpha-fetoprotein enhan 96.0 0.0062 2.1E-07 41.4 3.7 39 146-184 17-55 (80)
7 2dmt_A Homeobox protein BARH-l 96.0 0.0083 2.9E-07 41.3 4.4 39 146-184 17-55 (80)
8 2cra_A Homeobox protein HOX-B1 95.9 0.0079 2.7E-07 40.4 4.0 39 146-184 7-45 (70)
9 2djn_A Homeobox protein DLX-5; 95.9 0.0085 2.9E-07 40.2 4.0 39 146-184 7-45 (70)
10 1x2n_A Homeobox protein pknox1 95.9 0.007 2.4E-07 40.8 3.7 41 144-184 5-48 (73)
11 1akh_A Protein (mating-type pr 95.9 0.005 1.7E-07 40.0 2.7 39 146-184 5-43 (61)
12 2dmn_A Homeobox protein TGIF2L 95.7 0.0084 2.9E-07 42.0 3.5 40 146-185 7-49 (83)
13 1yz8_P Pituitary homeobox 2; D 95.7 0.0082 2.8E-07 40.1 3.2 40 145-184 2-41 (68)
14 2cue_A Paired box protein PAX6 95.6 0.011 3.9E-07 40.6 3.9 40 145-184 6-45 (80)
15 2m0c_A Homeobox protein arista 95.6 0.012 4.2E-07 39.3 4.0 41 144-184 7-47 (75)
16 1du6_A PBX1, homeobox protein 95.6 0.0076 2.6E-07 39.6 2.8 40 146-185 3-45 (64)
17 3rkq_A Homeobox protein NKX-2. 95.5 0.011 3.8E-07 37.5 3.3 38 147-184 3-40 (58)
18 2k40_A Homeobox expressed in E 95.5 0.01 3.5E-07 39.4 3.2 38 147-184 2-39 (67)
19 2da5_A Zinc fingers and homeob 95.5 0.0098 3.4E-07 40.7 3.2 39 146-184 7-45 (75)
20 2dmq_A LIM/homeobox protein LH 95.5 0.014 4.8E-07 39.8 4.0 39 146-184 7-45 (80)
21 1k61_A Mating-type protein alp 95.5 0.0097 3.3E-07 38.6 2.9 36 149-184 1-39 (60)
22 1wh5_A ZF-HD homeobox family p 95.5 0.02 7E-07 40.1 4.7 39 146-184 17-59 (80)
23 2da1_A Alpha-fetoprotein enhan 95.4 0.012 4.3E-07 39.2 3.4 39 146-184 7-45 (70)
24 1uhs_A HOP, homeodomain only p 95.4 0.011 3.8E-07 39.8 3.2 39 146-184 1-40 (72)
25 1ig7_A Homeotic protein MSX-1; 95.4 0.013 4.5E-07 37.6 3.4 37 148-184 2-38 (58)
26 2kt0_A Nanog, homeobox protein 95.3 0.025 8.7E-07 38.8 4.8 39 146-184 22-60 (84)
27 2dms_A Homeobox protein OTX2; 95.3 0.019 6.3E-07 39.4 3.9 39 146-184 7-45 (80)
28 1nk2_P Homeobox protein VND; h 95.2 0.022 7.7E-07 38.9 4.3 39 146-184 9-47 (77)
29 2vi6_A Homeobox protein nanog; 95.1 0.013 4.5E-07 38.3 2.8 39 146-184 3-41 (62)
30 1bw5_A ISL-1HD, insulin gene e 95.1 0.017 5.9E-07 38.2 3.2 38 147-184 4-41 (66)
31 3nar_A ZHX1, zinc fingers and 95.1 0.014 4.9E-07 41.6 3.0 39 146-184 25-63 (96)
32 2dn0_A Zinc fingers and homeob 95.0 0.018 6.1E-07 39.3 3.1 39 146-184 8-46 (76)
33 1jgg_A Segmentation protein EV 94.9 0.018 6.2E-07 37.4 3.0 37 148-184 3-39 (60)
34 1mnm_C Protein (MAT alpha-2 tr 94.9 0.016 5.4E-07 40.5 2.9 40 146-185 27-69 (87)
35 2hdd_A Protein (engrailed home 94.9 0.017 6E-07 37.6 2.9 38 147-184 4-41 (61)
36 2r5y_A Homeotic protein sex co 94.9 0.02 7E-07 40.0 3.4 42 143-184 25-66 (88)
37 1puf_B PRE-B-cell leukemia tra 94.9 0.019 6.3E-07 38.7 3.0 38 147-184 2-42 (73)
38 2l7z_A Homeobox protein HOX-A1 94.8 0.021 7.2E-07 38.8 3.1 39 146-184 7-45 (73)
39 2ecb_A Zinc fingers and homeob 94.8 0.025 8.4E-07 41.1 3.6 40 146-185 11-50 (89)
40 2hi3_A Homeodomain-only protei 94.7 0.024 8.1E-07 38.4 3.2 38 147-184 3-41 (73)
41 2ly9_A Zinc fingers and homeob 94.6 0.027 9.2E-07 37.9 3.3 39 146-184 6-44 (74)
42 1le8_B Mating-type protein alp 94.6 0.023 7.8E-07 39.5 2.9 39 147-185 3-44 (83)
43 1b72_B Protein (PBX1); homeodo 94.5 0.025 8.4E-07 39.2 3.0 38 147-184 2-42 (87)
44 1ahd_P Antennapedia protein mu 94.5 0.023 8E-07 38.0 2.8 38 147-184 3-40 (68)
45 1zq3_P PRD-4, homeotic bicoid 94.5 0.031 1.1E-06 37.3 3.3 39 146-184 2-40 (68)
46 1puf_A HOX-1.7, homeobox prote 94.4 0.05 1.7E-06 37.1 4.3 39 146-184 13-51 (77)
47 2cuf_A FLJ21616 protein; homeo 94.4 0.038 1.3E-06 39.2 3.9 38 146-183 7-44 (95)
48 1b72_A Protein (homeobox prote 94.4 0.027 9.2E-07 40.1 3.0 41 144-184 32-72 (97)
49 1fjl_A Paired protein; DNA-bin 94.4 0.031 1.1E-06 38.4 3.2 39 146-184 18-56 (81)
50 3k2a_A Homeobox protein MEIS2; 94.3 0.027 9.2E-07 38.0 2.7 34 152-185 4-40 (67)
51 1b8i_A Ultrabithorax, protein 94.2 0.031 1.1E-06 38.7 2.9 39 146-184 20-58 (81)
52 3a02_A Homeobox protein arista 94.1 0.032 1.1E-06 36.2 2.8 34 151-184 4-37 (60)
53 1wh7_A ZF-HD homeobox family p 94.1 0.065 2.2E-06 37.7 4.5 37 147-184 18-59 (80)
54 2da4_A Hypothetical protein DK 94.1 0.018 6.1E-07 39.5 1.6 39 146-184 8-50 (80)
55 2cqx_A LAG1 longevity assuranc 94.1 0.021 7.1E-07 39.3 1.8 39 146-184 8-47 (72)
56 1ftt_A TTF-1 HD, thyroid trans 94.0 0.037 1.3E-06 37.0 3.0 38 147-184 3-40 (68)
57 2e19_A Transcription factor 8; 93.9 0.052 1.8E-06 36.6 3.5 39 146-184 3-41 (64)
58 2dmp_A Zinc fingers and homeob 93.7 0.048 1.6E-06 38.6 3.2 37 148-184 15-51 (89)
59 3a03_A T-cell leukemia homeobo 93.4 0.054 1.8E-06 34.9 2.7 33 152-184 3-35 (56)
60 3a01_A Homeodomain-containing 93.2 0.08 2.7E-06 37.6 3.6 40 146-185 17-56 (93)
61 2d5v_A Hepatocyte nuclear fact 92.9 0.072 2.5E-06 40.8 3.3 39 146-184 97-135 (164)
62 1au7_A Protein PIT-1, GHF-1; c 92.3 0.076 2.6E-06 40.7 2.7 39 146-184 87-125 (146)
63 3d1n_I POU domain, class 6, tr 92.3 0.13 4.4E-06 39.2 3.9 39 146-184 93-131 (151)
64 3nau_A Zinc fingers and homeob 89.9 0.21 7.2E-06 35.2 2.8 36 147-185 8-43 (66)
65 3l1p_A POU domain, class 5, tr 89.8 0.25 8.5E-06 38.1 3.5 40 145-184 95-134 (155)
66 1lfb_A Liver transcription fac 89.2 0.29 1E-05 35.8 3.3 36 147-182 10-45 (99)
67 1e3o_C Octamer-binding transcr 88.7 0.27 9.2E-06 37.9 2.9 39 146-184 101-139 (160)
68 2xsd_C POU domain, class 3, tr 88.3 0.26 9E-06 38.5 2.6 39 146-184 99-137 (164)
69 2da6_A Hepatocyte nuclear fact 87.4 0.55 1.9E-05 35.3 3.8 37 146-182 6-42 (102)
70 2l9r_A Homeobox protein NKX-3. 86.2 0.57 1.9E-05 32.2 3.1 33 152-184 10-42 (69)
71 1x2m_A LAG1 longevity assuranc 80.8 1.5 5.3E-05 30.1 3.5 35 145-183 3-38 (64)
72 1mh3_A Maltose binding-A1 home 80.8 1.1 3.6E-05 36.6 3.1 37 148-184 367-403 (421)
73 2lk2_A Homeobox protein TGIF1; 79.2 1.5 5.1E-05 32.1 3.2 34 152-185 11-47 (89)
74 2h8r_A Hepatocyte nuclear fact 74.9 2 6.8E-05 36.1 3.2 35 148-182 144-178 (221)
75 1ic8_A Hepatocyte nuclear fact 64.8 3.8 0.00013 33.2 2.7 35 148-182 117-151 (194)
76 2da7_A Zinc finger homeobox pr 63.1 4.4 0.00015 29.1 2.4 30 155-184 14-43 (71)
77 1wi3_A DNA-binding protein SAT 44.7 19 0.00066 25.9 3.3 39 146-184 7-46 (71)
78 3oeo_A Spheroplast protein Y; 31.2 27 0.00094 26.4 2.4 23 159-181 95-117 (138)
79 3itf_A Periplasmic adaptor pro 27.2 32 0.0011 26.7 2.2 23 160-182 108-130 (145)
80 2ba3_A NIKA; dimer, bacterial 27.0 33 0.0011 21.2 1.9 24 146-169 15-38 (51)
No 1
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.91 E-value=0.00074 Score=48.43 Aligned_cols=42 Identities=29% Similarity=0.199 Sum_probs=37.5
Q ss_pred CcccccccccChHHHHHHHHhhhhccCCChhhhhhhhccccc
Q 029785 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 144 G~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~~ 185 (188)
|..++|+-++|++|..+||..|..+.-+++..+.+||..-|.
T Consensus 1 ~~~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgL 42 (76)
T 2ecc_A 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGL 42 (76)
T ss_dssp CCCSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCc
Confidence 345678888999999999999999999999999999987664
No 2
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.36 E-value=0.0036 Score=42.08 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=35.4
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|++-++|++|..+||..|..+..+++.++..||..=|
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQ 45 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 567888999999999999999999999999999997654
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.14 E-value=0.0046 Score=41.41 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=35.4
Q ss_pred cccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 145 VNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
...|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVH 45 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 3567778899999999999999999999999999997544
No 4
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=96.08 E-value=0.0062 Score=40.65 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=36.2
Q ss_pred CcccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 144 G~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+...|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLN 45 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 33567778899999999999999999999999999997655
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=96.05 E-value=0.0043 Score=40.93 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=33.9
Q ss_pred cccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 145 VNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
...|+.-++|.+|...||..|..+.-+++.++..||..=|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 41 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLN 41 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 3567788999999999999999999999999999997544
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=95.99 E-value=0.0062 Score=41.37 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.6
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|..+||..|..+..+++.++..||..=|
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~ 55 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVG 55 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 445556799999999999999999999999999987544
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.98 E-value=0.0083 Score=41.31 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=33.9
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+..+++.++..||..=|
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 55 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLG 55 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 445566799999999999999999999999999997544
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.93 E-value=0.0079 Score=40.36 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=35.2
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|..+||..|..+.-+++.++..||..-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATS 45 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 567778999999999999999999999999999997655
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.91 E-value=0.0085 Score=40.21 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=35.0
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLG 45 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 557777899999999999999999999999999997655
No 10
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.90 E-value=0.007 Score=40.80 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=35.0
Q ss_pred CcccccccccChHHHHHHHHhhhh---ccCCChhhhhhhhcccc
Q 029785 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNPVIISLSLSIDG 184 (188)
Q Consensus 144 G~~~RKKLRLsKeQsa~LEesFk~---H~tLnpkqK~~la~~~~ 184 (188)
+...|++-+||++|..+||..|.+ |.-+++.+|..||..-|
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~ 48 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN 48 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC
Confidence 335677888999999999999988 67899999999997655
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=95.88 E-value=0.005 Score=39.99 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=30.0
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|..+||..|..|.-+++.++..||..=|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~ 43 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCG 43 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHC
Confidence 457778999999999999999999999999999997654
No 12
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=95.69 E-value=0.0084 Score=41.98 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=34.4
Q ss_pred ccccccccChHHHHHHHHhhhhc---cCCChhhhhhhhccccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQH---STLNPVIISLSLSIDGF 185 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H---~tLnpkqK~~la~~~~~ 185 (188)
..|++-+||++|..+||+.|.+| .-+++.+|..||..-|+
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gL 49 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNL 49 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCc
Confidence 44667779999999999999996 89999999999986553
No 13
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=95.67 E-value=0.0082 Score=40.09 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=35.5
Q ss_pred cccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 145 VNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
...|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 41 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTN 41 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 3467778899999999999999999999999999997655
No 14
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.64 E-value=0.011 Score=40.64 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=35.7
Q ss_pred cccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 145 VNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
...|+.-++|.+|...||..|....-+++.++..||..-|
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKID 45 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 3567778899999999999999999999999999997655
No 15
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.63 E-value=0.012 Score=39.32 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=35.7
Q ss_pred CcccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 144 G~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+...|+.-++|.+|...||..|.....+++.++..||..-|
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 47 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTD 47 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 44567778899999999999999999999999999997654
No 16
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.60 E-value=0.0076 Score=39.57 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred ccccccccChHHHHHHHHhh---hhccCCChhhhhhhhccccc
Q 029785 146 NARKKLRLTKEQSALLEESF---KQHSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesF---k~H~tLnpkqK~~la~~~~~ 185 (188)
+.|++-++|++|..+||..| ..+.-+++.++..||..-|.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L 45 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGI 45 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCc
Confidence 46788899999999999999 77888999999999976553
No 17
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=95.54 E-value=0.011 Score=37.53 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=33.9
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|.+|...||..|.....+++.++..||..=|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 40 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLK 40 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 46678899999999999999999999999999987544
No 18
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=95.52 E-value=0.01 Score=39.38 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=34.4
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 39 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLN 39 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 57778999999999999999999999999999997654
No 19
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.52 E-value=0.0098 Score=40.71 Aligned_cols=39 Identities=23% Similarity=0.039 Sum_probs=34.6
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..+|.-|+|.+|...||..|.....+++.++..||..=|
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETK 45 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 356777899999999999999999999999999997544
No 20
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.51 E-value=0.014 Score=39.83 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=35.2
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+..+++.++..||..=|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG 45 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 567778899999999999999999999999999997654
No 21
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=95.46 E-value=0.0097 Score=38.62 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.9
Q ss_pred cccccChHHHHHHHHhhhh---ccCCChhhhhhhhcccc
Q 029785 149 KKLRLTKEQSALLEESFKQ---HSTLNPVIISLSLSIDG 184 (188)
Q Consensus 149 KKLRLsKeQsa~LEesFk~---H~tLnpkqK~~la~~~~ 184 (188)
|+-|+|++|..+||..|.. +.-+++.++..||..-|
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g 39 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS 39 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC
Confidence 4568999999999999999 88899999999997655
No 22
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=95.45 E-value=0.02 Score=40.05 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=33.2
Q ss_pred ccccccccChHHHHHHHHhhhh----ccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQ----HSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~----H~tLnpkqK~~la~~~~ 184 (188)
..|+.-.+|.+|...||..|.. +..++..++++||..=|
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lg 59 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETG 59 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhC
Confidence 4455566899999999999999 88999999999997654
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=95.43 E-value=0.012 Score=39.16 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=35.0
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|..+||..|..+.-+++.++..||..-|
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSG 45 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 467778899999999999999999999999999997644
No 24
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.42 E-value=0.011 Score=39.83 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=34.3
Q ss_pred ccccccccChHHHHHHHHhhhh-ccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQ-HSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~-H~tLnpkqK~~la~~~~ 184 (188)
|.+++-++|.+|...||..|.. ...+++.++..||..=|
T Consensus 1 G~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~ 40 (72)
T 1uhs_A 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG 40 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC
Confidence 3578889999999999999996 99999999999997544
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=95.40 E-value=0.013 Score=37.63 Aligned_cols=37 Identities=22% Similarity=0.113 Sum_probs=33.5
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 38 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLS 38 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 5667899999999999999999999999999998655
No 26
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=95.31 E-value=0.025 Score=38.85 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=34.8
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|..+||..|..+..+++.++..||..=|
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 60 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN 60 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 556677899999999999999999999999999997655
No 27
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.26 E-value=0.019 Score=39.43 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=35.2
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|..+||..|.....+++.++..||..-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKIN 45 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 567778899999999999999999999999999997655
No 28
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=95.25 E-value=0.022 Score=38.86 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=34.0
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|-..||..|..+..++..++..||..=|
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 47 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIR 47 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC
Confidence 345566799999999999999999999999999997654
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=95.14 E-value=0.013 Score=38.31 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=31.3
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+.-+++.++..||..=|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 41 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILN 41 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 456677899999999999999999999999999997544
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=95.06 E-value=0.017 Score=38.18 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=34.2
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 41 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG 41 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 56778899999999999999999999999999997654
No 31
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=41.56 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=34.1
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+.|++-++|++|..+||..|.....++..++..||..=|
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 63 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESG 63 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 457888999999999999999999999999999997544
No 32
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.97 E-value=0.018 Score=39.27 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=34.3
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..+.+-++|++|...||..|..+.-+++.++..||..-|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~ 46 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTG 46 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 345677899999999999999999999999999997644
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=94.93 E-value=0.018 Score=37.41 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=33.3
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 3 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 39 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLN 39 (60)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC
Confidence 5667899999999999999999999999999997644
No 34
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=94.92 E-value=0.016 Score=40.46 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=34.9
Q ss_pred ccccccccChHHHHHHHHhhhh---ccCCChhhhhhhhccccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQ---HSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~---H~tLnpkqK~~la~~~~~ 185 (188)
..|+.-++|++|..+||..|.. |.-+++.+|..||..-|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL 69 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSL 69 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCc
Confidence 4566778999999999999999 899999999999976553
No 35
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=94.91 E-value=0.017 Score=37.61 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=32.3
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|.+|...||..|..+.-+++.++..||..-|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 41 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELG 41 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 46677899999999999999999999999999997654
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=94.89 E-value=0.02 Score=39.97 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=33.3
Q ss_pred cCcccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 143 dG~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
++...|+.-++|.+|...||..|....-++..++..||..=|
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~ 66 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALS 66 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 344677888899999999999999999999999999997654
No 37
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=94.89 E-value=0.019 Score=38.70 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=33.3
Q ss_pred cccccccChHHHHHHHHhh---hhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESF---KQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesF---k~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|++|..+||..| ..+.-+++.++..||..-|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~ 42 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG 42 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHC
Confidence 4677899999999999999 7778899999999997655
No 38
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=94.81 E-value=0.021 Score=38.75 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=35.1
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+.|+.-++|.+|-..||..|..+.-+++.++..||..-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 45 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHC
Confidence 467788999999999999999999999999999997654
No 39
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.75 E-value=0.025 Score=41.15 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=34.9
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhccccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~~ 185 (188)
..+|..|+|.+|...||..|..+.-++...+.+||..-|+
T Consensus 11 ~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgL 50 (89)
T 2ecb_A 11 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKL 50 (89)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCC
T ss_pred CchhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCc
Confidence 3456669999999999999999999999999999976553
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.71 E-value=0.024 Score=38.40 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=33.6
Q ss_pred cccccccChHHHHHHHHhhh-hccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFK-QHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk-~H~tLnpkqK~~la~~~~ 184 (188)
+++.-++|.+|...||..|. .+..+++.++..||..=|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~ 41 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG 41 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 56778999999999999999 599999999999997544
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=94.61 E-value=0.027 Score=37.87 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=34.8
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..+++-++|++|...||..|.....+++.++..||..-|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~ 44 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITG 44 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 457778999999999999999999999999999997644
No 42
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=94.56 E-value=0.023 Score=39.54 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=32.8
Q ss_pred cccccccChHHHHHHHHhhhh---ccCCChhhhhhhhccccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQ---HSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~---H~tLnpkqK~~la~~~~~ 185 (188)
.++.-|||++|..+||..|.. |.-++..++..||..-|.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gL 44 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSL 44 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCC
Confidence 355667999999999999999 899999999999976553
No 43
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=94.54 E-value=0.025 Score=39.16 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=32.8
Q ss_pred cccccccChHHHHHHHHhh---hhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESF---KQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesF---k~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-+||++|..+||..| ..+.-+++.++..||..-|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~ 42 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG 42 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC
Confidence 3677889999999999999 7778899999999997655
No 44
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=94.53 E-value=0.023 Score=38.05 Aligned_cols=38 Identities=18% Similarity=0.042 Sum_probs=33.8
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|.+|...||..|..+.-+++.++..||..=|
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 40 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALS 40 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHC
Confidence 46677899999999999999999999999999987544
No 45
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=94.49 E-value=0.031 Score=37.34 Aligned_cols=39 Identities=23% Similarity=0.129 Sum_probs=34.5
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+.-+++.++..||..=|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 40 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLA 40 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 356777899999999999999999999999999987544
No 46
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=94.43 E-value=0.05 Score=37.10 Aligned_cols=39 Identities=21% Similarity=0.084 Sum_probs=34.8
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|-..||..|..+..+++.++..||..=|
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 51 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLN 51 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHC
Confidence 567778899999999999999999999999999997544
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.42 E-value=0.038 Score=39.17 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=34.0
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSID 183 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~ 183 (188)
..|+..++|++|-.+||..|..+..++..++++||..=
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l 44 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC 44 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45677789999999999999999999999999998753
No 48
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=94.37 E-value=0.027 Score=40.11 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=32.9
Q ss_pred CcccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 144 G~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+...|+.-++|.+|...||..|..+..+++.++..||..=|
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 72 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLE 72 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhC
Confidence 33556777899999999999999999999999999997544
No 49
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=94.37 E-value=0.031 Score=38.39 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=34.2
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|-.+||..|..+..++..++..||..-|
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 56 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTN 56 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHC
Confidence 456667799999999999999999999999999997644
No 50
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=94.28 E-value=0.027 Score=38.04 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=28.4
Q ss_pred ccChHHHHHHHHhhh---hccCCChhhhhhhhccccc
Q 029785 152 RLTKEQSALLEESFK---QHSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 152 RLsKeQsa~LEesFk---~H~tLnpkqK~~la~~~~~ 185 (188)
+||++|..+||+.|. .|.-+++.+|..||..-|.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l 40 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGL 40 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCc
Confidence 799999999999999 7777999999999976553
No 51
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=94.16 E-value=0.031 Score=38.70 Aligned_cols=39 Identities=18% Similarity=0.067 Sum_probs=32.2
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+..+++.++..||..=|
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 58 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALS 58 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 456777899999999999999999999999999997544
No 52
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=94.13 E-value=0.032 Score=36.19 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=30.5
Q ss_pred cccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 151 LRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 151 LRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
-++|.+|-..||..|..+..+++.++..||..-|
T Consensus 4 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 37 (60)
T 3a02_A 4 MTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG 37 (60)
T ss_dssp -CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 4799999999999999999999999999997544
No 53
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=94.12 E-value=0.065 Score=37.74 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.1
Q ss_pred cccccccChHHHHHHHHhhhh-----ccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQ-----HSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~-----H~tLnpkqK~~la~~~~ 184 (188)
.|+.-.+|.+|...|| .|.+ +.-++..++++||..=|
T Consensus 18 rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lg 59 (80)
T 1wh7_A 18 KRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETG 59 (80)
T ss_dssp SCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSC
T ss_pred CCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhC
Confidence 3455568999999999 7999 88999999999997544
No 54
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.11 E-value=0.018 Score=39.50 Aligned_cols=39 Identities=8% Similarity=0.076 Sum_probs=33.1
Q ss_pred ccccccccChHHHHHHHHhhhhc----cCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQH----STLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H----~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+ ..++..++++||..-|
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lg 50 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN 50 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhC
Confidence 34555668999999999999999 8999999999987544
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.06 E-value=0.021 Score=39.30 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=34.7
Q ss_pred ccccccccChHHHHHHHHhh-hhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESF-KQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesF-k~H~tLnpkqK~~la~~~~ 184 (188)
+.++|-|++.+|-..||..| .....+++.++.+||.-=|
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~ 47 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLD 47 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 46888999999999999999 8888999999999997544
No 56
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=94.05 E-value=0.037 Score=36.95 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=33.8
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.|+.-++|.+|-..||..|..+.-+++.++..||..=|
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 40 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIH 40 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 46667899999999999999999999999999997544
No 57
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.88 E-value=0.052 Score=36.61 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=33.3
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
++......+++|...||..|..+..++..++..||..=|
T Consensus 3 sg~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 41 (64)
T 2e19_A 3 SGSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVN 41 (64)
T ss_dssp CSCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 445556778999999999999999999999999997544
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.70 E-value=0.048 Score=38.62 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=32.4
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
+|.-|+|.+|-.+||..|..+..+++.++..||..=|
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~ 51 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETK 51 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhC
Confidence 4455699999999999999999999999999987544
No 59
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=93.37 E-value=0.054 Score=34.89 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=29.6
Q ss_pred ccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 152 RLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 152 RLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
.+|++|...||..|..+.-+++.++..||..=|
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 35 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALR 35 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC
Confidence 479999999999999999999999999997544
No 60
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=93.15 E-value=0.08 Score=37.65 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=34.5
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhccccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~~ 185 (188)
..|+.-++|.+|-..||..|..+..+++.++..||..=|.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L 56 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKM 56 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 3455567999999999999999999999999999976553
No 61
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=92.89 E-value=0.072 Score=40.83 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=32.7
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+..++|++|...||..|..|.-+++.++..||..=|
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~ 135 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLG 135 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 456677899999999999999999999999999997544
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=92.29 E-value=0.076 Score=40.67 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=32.8
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+..+++.++..||..-|
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 125 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELN 125 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 344556799999999999999999999999999997544
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=92.26 E-value=0.13 Score=39.22 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=33.5
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|++|...||..|..+..+++.++..||..=|
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 131 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELN 131 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHC
Confidence 344556799999999999999999999999999997544
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=89.89 E-value=0.21 Score=35.18 Aligned_cols=36 Identities=36% Similarity=0.390 Sum_probs=30.3
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhccccc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~~ 185 (188)
-||| ||+|-..||..|....-+++..+.+||..-|.
T Consensus 8 ~~~~---~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgL 43 (66)
T 3nau_A 8 HRKK---TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGL 43 (66)
T ss_dssp ---C---CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCC
T ss_pred hhhh---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCc
Confidence 3665 89999999999999999999999999987653
No 65
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=89.84 E-value=0.25 Score=38.06 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=34.9
Q ss_pred cccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 145 VNARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
...|+.-++|.+|...||..|..+..+++.++..||..=|
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~ 134 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLG 134 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTT
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcC
Confidence 3556677899999999999999999999999999997544
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=89.17 E-value=0.29 Score=35.80 Aligned_cols=36 Identities=6% Similarity=0.118 Sum_probs=31.0
Q ss_pred cccccccChHHHHHHHHhhhhccCCChhhhhhhhcc
Q 029785 147 ARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 147 ~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~ 182 (188)
.|+...+|.+|-..||..|..+..++..++.+||..
T Consensus 10 rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~ 45 (99)
T 1lfb_A 10 RRNRFKWGPASQQILFQAYERQKNPSKEERETLVEE 45 (99)
T ss_dssp ---CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 456667999999999999999999999999999976
No 67
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=88.71 E-value=0.27 Score=37.94 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=32.4
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|..+..++..++..||..=|
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 139 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLN 139 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHC
Confidence 345666789999999999999999999999999997544
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=88.27 E-value=0.26 Score=38.49 Aligned_cols=39 Identities=13% Similarity=0.039 Sum_probs=29.7
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
..|+.-++|.+|...||..|.....+++.++..||..=|
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~ 137 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQ 137 (164)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 445667899999999999999999999999999997544
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.40 E-value=0.55 Score=35.27 Aligned_cols=37 Identities=5% Similarity=0.138 Sum_probs=33.0
Q ss_pred ccccccccChHHHHHHHHhhhhccCCChhhhhhhhcc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~ 182 (188)
..|+..++|++|-.+||..|.....++...+.+||+.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ 42 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEE 42 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4566678899999999999999999999999999874
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=86.24 E-value=0.57 Score=32.25 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=29.9
Q ss_pred ccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 152 RLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 152 RLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
-+|.+|-..||..|....-+++.++..||..=|
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~ 42 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLK 42 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 378999999999999999999999999997654
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=80.84 E-value=1.5 Score=30.11 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=26.9
Q ss_pred cccccccccChHHHHHHHHhhh-hccCCChhhhhhhhccc
Q 029785 145 VNARKKLRLTKEQSALLEESFK-QHSTLNPVIISLSLSID 183 (188)
Q Consensus 145 ~~~RKKLRLsKeQsa~LEesFk-~H~tLnpkqK~~la~~~ 183 (188)
.+++||. +|...||..|. ....++..++.+||.-=
T Consensus 3 ~~~~~~~----~~~~~LE~~F~~~~~yp~~~~r~~LA~~l 38 (64)
T 1x2m_A 3 SGSSGTA----QPNAILEKVFTAITKHPDEKRLEGLSKQL 38 (64)
T ss_dssp CSSCCSS----CHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCc----hHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 3566664 58999999995 45569999999998643
No 72
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=80.79 E-value=1.1 Score=36.57 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=31.8
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
|.+-.|+++|...||..|+.|.-++..+|++||.-=|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~ 403 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCG 403 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 3344589999999999999999999999999997544
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=79.19 E-value=1.5 Score=32.15 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=30.1
Q ss_pred ccChHHHHHHHHhhhh---ccCCChhhhhhhhccccc
Q 029785 152 RLTKEQSALLEESFKQ---HSTLNPVIISLSLSIDGF 185 (188)
Q Consensus 152 RLsKeQsa~LEesFk~---H~tLnpkqK~~la~~~~~ 185 (188)
-|+|+|..+|++-|.+ |.-+++.+|..||..-|.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgL 47 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHL 47 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSS
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCc
Confidence 4899999999999999 677999999999987664
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=74.89 E-value=2 Score=36.12 Aligned_cols=35 Identities=6% Similarity=0.133 Sum_probs=30.6
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~ 182 (188)
|+...++++|-..||..|..+..++...+.+||+-
T Consensus 144 R~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~ 178 (221)
T 2h8r_A 144 RNRFKWGPASQQILYQAYDRQKNPSKEEREALVEE 178 (221)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33345799999999999999999999999999974
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=64.81 E-value=3.8 Score=33.24 Aligned_cols=35 Identities=6% Similarity=0.127 Sum_probs=30.8
Q ss_pred ccccccChHHHHHHHHhhhhccCCChhhhhhhhcc
Q 029785 148 RKKLRLTKEQSALLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 148 RKKLRLsKeQsa~LEesFk~H~tLnpkqK~~la~~ 182 (188)
|+...+|+.|-..||..|..+..++...+.+||.-
T Consensus 117 r~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~ 151 (194)
T 1ic8_A 117 RNRFKWGPASQQILFQAYERQKNPSKEERETLVEE 151 (194)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44455899999999999999999999999999864
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.13 E-value=4.4 Score=29.10 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhhhccCCChhhhhhhhcccc
Q 029785 155 KEQSALLEESFKQHSTLNPVIISLSLSIDG 184 (188)
Q Consensus 155 KeQsa~LEesFk~H~tLnpkqK~~la~~~~ 184 (188)
|+|..+||..|..+.-.+.++.+.||.-=|
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lg 43 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVG 43 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 899999999999999999999999987544
No 77
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.68 E-value=19 Score=25.89 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=31.6
Q ss_pred ccccccccChHHHHHHHHhhhh-ccCCChhhhhhhhcccc
Q 029785 146 NARKKLRLTKEQSALLEESFKQ-HSTLNPVIISLSLSIDG 184 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~-H~tLnpkqK~~la~~~~ 184 (188)
..|..-.||.||.++|+..|.. ..-+.-+-++.||.--|
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tG 46 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLD 46 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3455557899999999999999 88888888888886544
No 78
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=31.24 E-value=27 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.050 Sum_probs=17.5
Q ss_pred HHHHHhhhhccCCChhhhhhhhc
Q 029785 159 ALLEESFKQHSTLNPVIISLSLS 181 (188)
Q Consensus 159 a~LEesFk~H~tLnpkqK~~la~ 181 (188)
..++--++.++.|||+||..+.+
T Consensus 95 ~~~~~~~~~~~vLTPEQr~q~~~ 117 (138)
T 3oeo_A 95 AHMETQNKIYNILTPEQKKQFNA 117 (138)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 34556678888999999988765
No 79
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=27.18 E-value=32 Score=26.73 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=17.4
Q ss_pred HHHHhhhhccCCChhhhhhhhcc
Q 029785 160 LLEESFKQHSTLNPVIISLSLSI 182 (188)
Q Consensus 160 ~LEesFk~H~tLnpkqK~~la~~ 182 (188)
.++--++.++.|||+||..|.++
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~ 130 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEK 130 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHH
Confidence 35566778889999999887653
No 80
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=27.00 E-value=33 Score=21.23 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=20.8
Q ss_pred ccccccccChHHHHHHHHhhhhcc
Q 029785 146 NARKKLRLTKEQSALLEESFKQHS 169 (188)
Q Consensus 146 ~~RKKLRLsKeQsa~LEesFk~H~ 169 (188)
+.+-.+|||.|+.+.|++..+.+.
T Consensus 15 ~~~i~vRlt~eE~~~l~~~A~~~g 38 (51)
T 2ba3_A 15 TVVRTLRFSPVEDETIRKKAEDSG 38 (51)
T ss_dssp SEEEEEEECHHHHHHHHHHHHHHT
T ss_pred ceeEEEEECHHHHHHHHHHHHHhC
Confidence 456689999999999999998876
Done!