Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>029787
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRA
SPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFD
LEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVS
PGLRKGME

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029787
        (188 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2174979 - symbol:AT5G66860 species:3702 "Arabi...   262  1.3e-22   1
TIGR_CMR|SPO_0812 - symbol:SPO_0812 "ribosomal protein L2...   110  0.00011   1


>TAIR|locus:2174979 [details] [associations]
            symbol:AT5G66860 species:3702 "Arabidopsis thaliana"
            [GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR011035 GO:GO:0005739 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0004812
            EMBL:AB010700 KO:K02897 Gene3D:2.170.120.20 Gene3D:2.40.240.10
            InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715 EMBL:AY054545
            EMBL:AY064668 IPI:IPI00546047 RefSeq:NP_201487.1 UniGene:At.24321
            ProteinModelPortal:Q9FKZ4 SMR:Q9FKZ4 STRING:Q9FKZ4 PaxDb:Q9FKZ4
            PRIDE:Q9FKZ4 DNASU:836820 EnsemblPlants:AT5G66860.1 GeneID:836820
            KEGG:ath:AT5G66860 TAIR:At5g66860 eggNOG:NOG145694
            HOGENOM:HOG000238024 InParanoid:Q9FKZ4 OMA:HIPPKIE PhylomeDB:Q9FKZ4
            ProtClustDB:CLSN2686885 Genevestigator:Q9FKZ4 Uniprot:Q9FKZ4
        Length = 249

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 59/141 (41%), Positives = 83/141 (58%)

Query:    52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQE----DGQHGG--NKRLISVQTNQIRKL 105
             +TI AIPR + G  VS ++R  GR+P++VF Q     D    G   K+L++    QI+ +
Sbjct:    34 QTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSI 93

Query:   106 VGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEAL 165
             +  +G  FF S  F L++R+  GS  L+E  RVLP KVH    T   LN+ F+ A     
Sbjct:    94 IDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEK 153

Query:   166 LKIDVPLVFRGDDVSPGLRKG 186
             LK+DVP+VF+G D  PGL+KG
Sbjct:   154 LKVDVPVVFKGLDHCPGLQKG 174


>TIGR_CMR|SPO_0812 [details] [associations]
            symbol:SPO_0812 "ribosomal protein L25" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
            ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
            [GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
            binding" evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021
            InterPro:IPR011035 InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907
            KO:K02897 ProtClustDB:PRK05618 Gene3D:2.170.120.20
            Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
            SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_166065.1
            ProteinModelPortal:Q5LV90 GeneID:3194994 KEGG:sil:SPO0812
            PATRIC:23374901 OMA:RDFTMHV Uniprot:Q5LV90
        Length = 207

 Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
 Identities = 41/134 (30%), Positives = 66/134 (49%)

Query:    54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRL-ISVQTNQIRKLVGHLGRS 112
             ++A+ R   G   + + R+ G VP IVF    G  G N+ L I +  N++ K++   GR 
Sbjct:     8 LVALERTGTGKGAARQARRDGMVPGIVF----G--GDNEPLPIQIPFNRLLKML-KAGR- 59

Query:   113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
              F S LF+L+V          E VRV+ R V      D P ++  +R    + +K+ + +
Sbjct:    60 -FKSTLFNLKVEGH-------EDVRVICRDVQRDVVKDLPTHLDLMRLRRTSRIKLFIHV 111

Query:   173 VFRGDDVSPGLRKG 186
              F     +PGL+KG
Sbjct:   112 DFVNHAAAPGLKKG 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       188   0.00087  110 3  11 22  0.44    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.96u 0.08s 18.04t   Elapsed:  00:00:01
  Total cpu time:  17.96u 0.08s 18.04t   Elapsed:  00:00:01
  Start:  Tue May 21 00:21:51 2013   End:  Tue May 21 00:21:52 2013

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