BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029787
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25 OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=rplY PE=3 SV=1
Length = 204
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 16/116 (13%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R+ GR P++++ GGN+ +++ + + LV LG F + + +L V +
Sbjct: 24 RREGRTPAVIY-------GGNEEPVAIHLEE-KALVKALGTGHFFNSVVELTVGGQ---- 71
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
VR LP+ V H TD P + FLR ++++ ++VP++F ++ SPGL+KG
Sbjct: 72 ----TVRTLPKDVAFHPVTDRPEHADFLRVSKDSVVHVNVPVIFANEEKSPGLKKG 123
>sp|B2IG64|RL25_BEII9 50S ribosomal protein L25 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplY PE=3
SV=1
Length = 221
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV--GHL 109
+T+ A R G + R+ GR+P +++ D I++ ++ KL+ GH
Sbjct: 5 KTLAATVRGGTGKGAARSIRREGRIPGVIYGGGDAPEP-----ITLDYRELNKLIYAGH- 58
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
F++ +FD+EV K RV+PR L PL+V FLR P A LK+
Sbjct: 59 ----FLTTIFDIEVEGA--------KQRVVPRDYQLDPVKGQPLHVDFLRLKPGATLKVS 106
Query: 170 VPLVFRGDDVSPGLRKG 186
VP+ F D+ PGL+KG
Sbjct: 107 VPIHFINADICPGLKKG 123
>sp|B8EK41|RL25_METSB 50S ribosomal protein L25 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rplY PE=3 SV=1
Length = 227
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 22/138 (15%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGN-KRLISVQTNQIRKLV--GH 108
+T+ A R G + R+ GR+P +++ GG+ I++ ++ KL+ GH
Sbjct: 5 KTLAAAARHGTGKGAARSVRREGRIPGVIY------GGGDPAEPITLDYRELNKLIYAGH 58
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
F++ LF+++V K RV+PR L D PL+V FLR P A LK+
Sbjct: 59 -----FLTTLFEIDVAGT--------KQRVIPRDYQLDPIKDLPLHVDFLRLKPGASLKV 105
Query: 169 DVPLVFRGDDVSPGLRKG 186
+VP+ F + PG++KG
Sbjct: 106 EVPVHFLNQETCPGVKKG 123
>sp|Q1GSP2|RL25_SPHAL 50S ribosomal protein L25 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplY PE=3 SV=1
Length = 212
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 16/134 (11%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
T+ A R G S + R+ GRVP++V+ GG + + + + + L+ L
Sbjct: 6 TLTAETRERGGKGASRELRRNGRVPAVVY-------GGKEEPLMIHVEE-KLLMKQLMTG 57
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F++ + +EV + ++R LP+ V H D P++ FLR +A +++ VP+
Sbjct: 58 HFMNSVVMIEVGGK--------QIRTLPKDVAFHPVKDRPIHADFLRIAKDATVQVAVPV 109
Query: 173 VFRGDDVSPGLRKG 186
VF+ ++ SPGL++G
Sbjct: 110 VFQNEEKSPGLKRG 123
>sp|Q9AAV8|RL25_CAUCR 50S ribosomal protein L25 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rplY PE=3 SV=1
Length = 197
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 52 ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGH 108
E IL + R GT + R+AG+VP +++ GG K I+V+ N+ RK
Sbjct: 3 EIILNVEVRDGAGTGNARATRRAGKVPGVLY-------GGGKAPVNIAVKANEFRK---- 51
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
S + +L V ++G EK V+ + V H TD P++ R L+KI
Sbjct: 52 ---SLYTGKLLGHLVTLQYGE----EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKI 104
Query: 169 DVPLVFRGDDVSPGLRKG 186
+VP+ F+ + S GL+KG
Sbjct: 105 EVPVHFKNHETSVGLKKG 122
>sp|B8GZU9|RL25_CAUCN 50S ribosomal protein L25 OS=Caulobacter crescentus (strain NA1000
/ CB15N) GN=rplY PE=3 SV=1
Length = 197
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 52 ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGH 108
E IL + R GT + R+AG+VP +++ GG K I+V+ N+ RK
Sbjct: 3 EIILNVEVRDGAGTGNARATRRAGKVPGVLY-------GGGKAPVNIAVKANEFRK---- 51
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
S + +L V ++G EK V+ + V H TD P++ R L+KI
Sbjct: 52 ---SLYTGKLLGHLVTLQYGE----EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKI 104
Query: 169 DVPLVFRGDDVSPGLRKG 186
+VP+ F+ + S GL+KG
Sbjct: 105 EVPVHFKNHETSVGLKKG 122
>sp|A5V625|RL25_SPHWW 50S ribosomal protein L25 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rplY PE=3 SV=1
Length = 207
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R G S R+ GRVP++++ ++ I V+ + KL+ H G F
Sbjct: 9 AEARERAGKGASRAIRREGRVPAVIYGEKQ-----EPASIHVEEKVLMKLL-HTGHFFNS 62
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ D+ + KVR LP+ V H TD PL+V FLR + ++VP+ F+
Sbjct: 63 VVMLDVGGK----------KVRTLPKDVQFHPVTDRPLHVDFLRIGEHTKVNVNVPVHFK 112
Query: 176 GDDVSPGLRKG 186
+++SPGL++G
Sbjct: 113 DEELSPGLKRG 123
>sp|Q2NAN1|RL25_ERYLH 50S ribosomal protein L25 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rplY PE=3 SV=1
Length = 229
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
T+ A R G S R+ GRVP++++ GG + + + + L+ L
Sbjct: 6 TLPAEARERAGKGASRALRREGRVPAVIY-------GGKEEPTMIHVEE-KLLIKQLMTG 57
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F++ + ++E+ + VR LP+ V LH +D P + F R +++ VP+
Sbjct: 58 HFMNSIVEIEIGGK--------TVRTLPKDVALHPVSDRPEHADFFRLAKGGKIEVSVPV 109
Query: 173 VFRGDDVSPGLRKG 186
VF ++ SPGL+KG
Sbjct: 110 VFMNEEASPGLKKG 123
>sp|Q2VZ23|RL25_MAGSA 50S ribosomal protein L25 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplY PE=3 SV=1
Length = 202
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
I A R G + R+AG+VP +++ G K I +Q + R + + ++
Sbjct: 6 AIAAELRDGSGKGAARATRRAGKVPGVIY-------GDKKAAICIQMDP-RVVWAQISKT 57
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F ++LF++++ + K L R V +H TD P++V F+R + + + VP+
Sbjct: 58 GFFTQLFNVDLGKD-------GKHLCLARDVQMHPVTDQPIHVDFMRVSADHAIHVKVPV 110
Query: 173 VFRGDDVSPGLRKG 186
F + SPG++KG
Sbjct: 111 HFTNELKSPGIKKG 124
>sp|B8IFN5|RL25_METNO 50S ribosomal protein L25 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplY PE=3 SV=1
Length = 211
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A+ R G + R+ GRVP++++ G + + IS+ NQ L+ G F+
Sbjct: 9 AVARDRVGKGAARAVRRQGRVPAVIYGG-----GQSPQSISLDANQTHHLIYGGG---FL 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ +F++EV K+R +PR L D PL+V FLR + ++VP+ F
Sbjct: 61 TTVFEIEVGGR--------KIRAIPRDYQLDPVKDLPLHVDFLRVTAGQTVAVEVPVHFV 112
Query: 176 GDDVSPGLRK 185
D +PGL++
Sbjct: 113 NQDAAPGLKQ 122
>sp|B0T899|RL25_CAUSK 50S ribosomal protein L25 OS=Caulobacter sp. (strain K31) GN=rplY
PE=3 SV=1
Length = 199
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 21/138 (15%)
Query: 52 ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGG--NKRLISVQTNQIRKLVGH 108
E IL + R GT S + R+ G+VP +++ GG I+V+ N+ RK + H
Sbjct: 3 EIILNVEIRDRAGTGGSRETRRQGKVPGVLY-------GGPLAPVNIAVKGNEFRKAL-H 54
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
G+ + L L+ GD EK V+ + V H TD PL+ R L+KI
Sbjct: 55 TGK--LLGHLVTLQ------HGD--EKQSVIAKAVQFHPVTDEPLHFDLYRVDEHQLIKI 104
Query: 169 DVPLVFRGDDVSPGLRKG 186
++P+ F+ D+S GL+KG
Sbjct: 105 EIPVHFKNHDISVGLKKG 122
>sp|B0UGY1|RL25_METS4 50S ribosomal protein L25 OS=Methylobacterium sp. (strain 4-46)
GN=rplY PE=3 SV=1
Length = 217
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A+ R G + R+ GRVP++++ G + + IS+ NQ L+ G F+
Sbjct: 9 AVARDRVGKGAARAVRRQGRVPAVIYGG-----GQSPQSISLDANQTHHLIYGGG---FL 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S +F++ V +R +PR L D PL+V FLR ++++VP+ F
Sbjct: 61 STVFEIAVDGR--------TIRAIPRDYQLDPVKDTPLHVDFLRVVSGQTIEVEVPVHFV 112
Query: 176 GDDVSPGLRK 185
D +PGL++
Sbjct: 113 NQDAAPGLKQ 122
>sp|Q5FRT8|RL25_GLUOX 50S ribosomal protein L25 OS=Gluconobacter oxydans (strain 621H)
GN=rplY PE=3 SV=1
Length = 218
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R+ G VP++++ G K+ S+ R ++ L R + SR+++L
Sbjct: 24 RREGLVPAVIY--------GGKQEPSIIALDPRVIMKELHRGGWSSRVYNLAAEGA---- 71
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
E V L R V LH TDAP++V F R + ++V + F G++ SPG+++G
Sbjct: 72 ---EPVAALIRDVQLHPVTDAPIHVDFQRVAAGTKVHVEVSIAFVGEEKSPGIKRG 124
>sp|A7HVD8|RL25_PARL1 50S ribosomal protein L25 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplY PE=3 SV=1
Length = 216
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 22/119 (18%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEF 127
R+AGRVP++++ G+K+ LI+V + L F+S + D+E+
Sbjct: 24 RRAGRVPAVIY--------GDKQSPELIAVSYKDVSAL---YQTGTFMSHVLDVEI---- 68
Query: 128 GSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
G E RV+PR V D ++V FLR A + +DVP+ F + SPG++ G
Sbjct: 69 --GGKTE--RVIPRDVQFEPVRDFIIHVDFLRLGKNATVTVDVPVHFHNHEASPGIKAG 123
>sp|Q1H3J2|RL25_METFK 50S ribosomal protein L25 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rplY PE=3 SV=1
Length = 207
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
TI A R GT S + R+AG VP +V+ GG+K +S++ N ++L
Sbjct: 4 TIKATKREGKGTSASRRLRRAGNVPGVVY-------GGDKEAVSLEFNH-KELFLEFRHE 55
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F + + +LEV + K +V+ R LH + ++ F R + + VPL
Sbjct: 56 TFHASILNLEVDGQ--------KEQVVLRDYQLHPVRNTIQHIDFQRVSASEKVHVKVPL 107
Query: 173 VFRGDDVSPGLR 184
F D++PG++
Sbjct: 108 HFINADIAPGVK 119
>sp|B1Z970|RL25_METPB 50S ribosomal protein L25 OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=rplY PE=3 SV=1
Length = 228
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHL 109
+T+ A+ R G + R+ G++P++++ GGN+ I+V + R L+
Sbjct: 5 KTLEAVARDRVGKGAARAVRRQGQIPAVIY-------GGNQAPEAIAVDLIRTRTLIYAG 57
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
G F + LFD+ V + K R +PR L + PL+V FLR + +D
Sbjct: 58 G---FKTTLFDITVGGK--------KTRAIPRDYQLDPVSGVPLHVDFLRVVSGQTVTVD 106
Query: 170 VPLVFRGDDVSPGLRK 185
VP+ F D+ +PG+++
Sbjct: 107 VPVHFVNDEKAPGIKQ 122
>sp|A5FZ47|RL25_ACICJ 50S ribosomal protein L25 OS=Acidiphilium cryptum (strain JF-5)
GN=rplY PE=3 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGR 111
ETI A RA G V+ R+AG+VP++++ G K+ ++ R ++ + R
Sbjct: 5 ETIAAEDRARAGKGVARATRRAGKVPAVIY--------GAKQEPTLIALDPRIVLREMKR 56
Query: 112 SFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVP 171
+ SRL+++E S K R L R + LH TD P +V F R +++ V
Sbjct: 57 GGWRSRLYEIETASG--------KARALMRDIQLHPVTDQPEHVDFQRLAAGEPVRVAVN 108
Query: 172 LVFRGDDVSPGLRKG 186
+ F + +S G+++G
Sbjct: 109 VNFLNELISVGMKRG 123
>sp|Q2RMV5|RL25_RHORT 50S ribosomal protein L25 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplY PE=3 SV=1
Length = 210
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGHLG 110
T+ A R G + R+ G+VP++++ GG + L+S+ I +
Sbjct: 6 TLSAKGRDRAGKGAARATRREGQVPAVIY-------GGRQDPVLLSLAPRLIHT---EMR 55
Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
++ F SRLFDL V E RV+ + V H TD P++V FLR + + + +
Sbjct: 56 KAGFSSRLFDLTVEGG-------ETHRVMVQDVQFHPVTDMPIHVDFLRIGKDTEVTVAI 108
Query: 171 PLVFRGDDVSPGLRKG 186
P+ F + SPGL++G
Sbjct: 109 PVHFINETASPGLKRG 124
>sp|B4R8Q7|RL25_PHEZH 50S ribosomal protein L25 OS=Phenylobacterium zucineum (strain
HLK1) GN=rplY PE=3 SV=1
Length = 208
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGHLGRSFFVS 116
R GT + R++G VP +++ GG+K I+V+ N+ RK + +
Sbjct: 11 RERTGTGGARDTRRSGMVPGVLY-------GGDKDPVAIAVRANEFRK-------ALYTG 56
Query: 117 RLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRG 176
+L V ++G+ E V+ + V +H TD P + R +KI+VP+ F
Sbjct: 57 KLLGHLVTLKYGN----ETQPVIAKAVDMHPVTDEPQHFDLYRVDEHQQIKIEVPVHFTN 112
Query: 177 DDVSPGLRKG 186
D SPGL++G
Sbjct: 113 QDDSPGLKRG 122
>sp|Q4UMK5|RL25_RICFE 50S ribosomal protein L25 OS=Rickettsia felis (strain ATCC VR-1525
/ URRWXCal2) GN=rplY PE=3 SV=1
Length = 203
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 17/131 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT S R+ GRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AKSRTEFGTGASRALRREGRVPAIIY-------GAGKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + K +VLP+ V LH TD +V F+ E K++VP+V+
Sbjct: 61 SQLINLTIDKK--------KYKVLPKAVELHPVTDIVRHVDFVFL-EEKTQKMEVPVVYE 111
Query: 176 GDDVSPGLRKG 186
G + + G+++G
Sbjct: 112 GKERALGVKRG 122
>sp|Q4FPH0|RL25_PELUB 50S ribosomal protein L25 OS=Pelagibacter ubique (strain HTCC1062)
GN=rplY PE=3 SV=1
Length = 228
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R AG +P I++ D + ++V ++ L+ + F+S + L + +
Sbjct: 21 RSAGNIPGIIYGGPD-----QNQKVTVLKKTLKSLID---KGSFLSNIITLNLDGK---- 68
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
VLPR++ + +D P ++ FLR P ++I+VP+VF + SPGL++G
Sbjct: 69 ----PQNVLPREITYNVISDEPTHIDFLRVVPGVKIRIEVPVVFINHETSPGLKRG 120
>sp|B0U5Y7|RL25_XYLFM 50S ribosomal protein L25 OS=Xylella fastidiosa (strain M12)
GN=rplY PE=3 SV=1
Length = 207
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLG 110
+ I A R G S + R AG +P+I++ GG++R +S+Q N + +
Sbjct: 3 NHQIKAQRRKDEGKGASRRLRHAGMIPAIIY-------GGDQRPVSIQLNHEQIWLAQQN 55
Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
F+ S + DL V + G G+ +VL R + H ++V F R +A L + V
Sbjct: 56 EWFY-SSILDLNV--DGGGGE-----KVLLRDLQRHPYRQLVMHVDFQRVSSDAKLSVAV 107
Query: 171 PLVFRGDDVSPGLRKG 186
PL F SP + G
Sbjct: 108 PLHFINQATSPAGKAG 123
>sp|B1LZ78|RL25_METRJ 50S ribosomal protein L25 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplY PE=3 SV=1
Length = 227
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHL 109
+T+ A+ R G + R+ G++P++++ GG + + I+V + R L+
Sbjct: 5 KTLEAVARDRVGKGAARAVRRQGQIPAVIY-------GGGQPPQSIAVDLIRTRTLIYAG 57
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
G F + LF++ + KVR +PR L T PL+V FLR + ++
Sbjct: 58 G---FKTTLFEINAGGK--------KVRAIPRDFQLDPVTGVPLHVDFLRVVSGQTVTVE 106
Query: 170 VPLVFRGDDVSPGLRK 185
VP+ F +D +PG++K
Sbjct: 107 VPVHFVNEDAAPGIKK 122
>sp|A4WPE3|RL25_RHOS5 50S ribosomal protein L25 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rplY PE=3 SV=1
Length = 203
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
R G + + R+ G VP IV+ GG + +S+ + L+ L + F+ L
Sbjct: 13 RTGTGKGAARQARREGYVPGIVY-------GGGQEPLSINV-KYNDLLNRLKKGRFLQTL 64
Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
F+L+V + E VRV+ R V D P +V F+R + + + + + F D
Sbjct: 65 FNLKVEGQ-------EDVRVICRGVQRDVVKDLPTHVDFMRLRRTSRINLFIHVTFENHD 117
Query: 179 VSPGLRKG 186
+PGL++G
Sbjct: 118 QAPGLKRG 125
>sp|A8GP85|RL25_RICAH 50S ribosomal protein L25 OS=Rickettsia akari (strain Hartford)
GN=rplY PE=3 SV=1
Length = 199
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 21/133 (15%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A PR GT + R+ GRVP+I++ G K +S+ + + + + + F+
Sbjct: 9 AKPRTEFGTGAARALRREGRVPAIIY-------GAGKTPVSISLEE-KAITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNV--TFLRAPPEALLKIDVPLV 173
S+L ++ + ++ +VLP+ V LH TD +V FL A + K++VP+V
Sbjct: 61 SQLINVTIDQ--------KQYKVLPKAVELHPVTDMVRHVDFVFLEAKTQ---KMEVPIV 109
Query: 174 FRGDDVSPGLRKG 186
+ G + + G+++G
Sbjct: 110 YEGKERALGVKRG 122
>sp|A8HS67|RL25_AZOC5 50S ribosomal protein L25 OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rplY PE=3 SV=1
Length = 207
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV--GHLGRSF 113
A+ RA G + ER+AGRVP++++ ++ IS+ +I +++ GH
Sbjct: 9 AVARARGGKGAARAERRAGRVPAVIYGEKQ-----EPVTISLGHKEITRIIYAGH----- 58
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F++ LF+++V K RV+PR L D PL+V FLR A + ++VP+
Sbjct: 59 FLTTLFEIDVDGV--------KHRVIPRDYQLDPVKDLPLHVDFLRVSQGASVTVEVPVH 110
Query: 174 FRGDDVSPGLRKG 186
F D +PGL+ G
Sbjct: 111 FENQDKAPGLKSG 123
>sp|Q219F9|RL25_RHOPB 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplY PE=3 SV=1
Length = 240
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 88 HGGNK--RLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHL 145
+G NK ISV ++R + GR F++ +FD+E+ + K RV+PR HL
Sbjct: 34 YGDNKPPVTISVDDTELRARI-LAGR--FLTTIFDVELDGQ--------KHRVIPRDFHL 82
Query: 146 HSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
D P++V FLR AL+++ VPL + + +PG+++G
Sbjct: 83 DPVRDFPIHVDFLRLGEGALIRVSVPLHLKNAEGAPGVKRG 123
>sp|A9W5L4|RL25_METEP 50S ribosomal protein L25 OS=Methylobacterium extorquens (strain
PA1) GN=rplY PE=3 SV=1
Length = 228
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHL 109
+T+ A+ R G + R+ G++P++++ GGN+ + I++ + R L+
Sbjct: 5 KTLEAVARDRVGKGAARAVRRQGQIPAVIY-------GGNQAPQAIAIDLIRARTLIYAG 57
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
G F + +F+++ + K R +PR L + PL+V FLR + +D
Sbjct: 58 G---FKTTVFEIDAGGK--------KTRAIPRDYQLDPVSGVPLHVDFLRVVAGQTVTVD 106
Query: 170 VPLVFRGDDVSPGLRK 185
VP+ F +D +PG+++
Sbjct: 107 VPVHFVNEDQAPGIKQ 122
>sp|B7KNU8|RL25_METC4 50S ribosomal protein L25 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplY PE=3 SV=1
Length = 228
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHL 109
+T+ A+ R G + R+ G++P++++ GGN+ + I++ + R L+
Sbjct: 5 KTLEAVARDRVGKGAARAVRRQGQIPAVIY-------GGNQAPQAIAIDLIRARTLIYAG 57
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
G F + +F+++ + K R +PR L + PL+V FLR + +D
Sbjct: 58 G---FKTTVFEIDAGGK--------KTRAIPRDYQLDPVSGVPLHVDFLRVVAGQTVTVD 106
Query: 170 VPLVFRGDDVSPGLRK 185
VP+ F +D +PG+++
Sbjct: 107 VPVHFVNEDQAPGIKQ 122
>sp|Q68WD3|RL25_RICTY 50S ribosomal protein L25 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplY PE=3 SV=1
Length = 203
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 21/133 (15%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K IS+ + +++ + R F+
Sbjct: 9 AKSRTEFGTGAARALRREGRVPAIIY-------GAGKIPISISLEE-KEITKYYRRPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNV--TFLRAPPEALLKIDVPLV 173
S+L +L + + + +VLP+ V LH TD +V FL A + K++VP+V
Sbjct: 61 SQLINLTIDKK--------QYKVLPKAVELHPVTDIVRHVDFVFLEAKTQ---KMEVPVV 109
Query: 174 FRGDDVSPGLRKG 186
+ G + + G+++G
Sbjct: 110 YEGKERALGVKRG 122
>sp|Q9ZCV3|RL25_RICPR 50S ribosomal protein L25 OS=Rickettsia prowazekii (strain Madrid
E) GN=rplY PE=3 SV=1
Length = 203
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 21/133 (15%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K IS+ + +++ + + F+
Sbjct: 9 AKSRTEFGTGAARALRREGRVPAIIY-------GAGKTPISISLKE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNV--TFLRAPPEALLKIDVPLV 173
S+L +L + + + +VLP+ V LH TD +V FL A + K++VP+V
Sbjct: 61 SQLINLTIDKK--------QYKVLPKAVELHPVTDIVRHVDFVFLEAKTQ---KMEVPIV 109
Query: 174 FRGDDVSPGLRKG 186
+ G + + G+++G
Sbjct: 110 YEGKERALGVKRG 122
>sp|A9HC01|RL25_GLUDA 50S ribosomal protein L25 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplY PE=3 SV=1
Length = 206
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R+ G+VP++++ G K+ ++ R +V + R + SR++D+ V
Sbjct: 24 RRDGQVPAVIY--------GAKQEPTLVALDPRLVVREMQRGGWRSRVYDVTVDGASSPA 75
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
L R++ LH +D P++V F R + ++V +VF G+D SPG+++G
Sbjct: 76 --------LMREIQLHPVSDKPIHVDFQRLAAGERVHVEVRIVFTGEDKSPGIKRG 123
>sp|A9IR85|RL25_BART1 50S ribosomal protein L25 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplY PE=3 SV=1
Length = 209
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
+K+ VLP+ L D PL+V FLR ++++++++P+ F +D +PGL+KG
Sbjct: 71 QKIMVLPKDYQLDPVRDFPLHVDFLRISAKSVVEVNIPVHFLNEDTAPGLKKG 123
>sp|Q161I5|RL25_ROSDO 50S ribosomal protein L25 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rplY PE=3 SV=1
Length = 212
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSF 113
++A R G + + R+ G VP IVF GG+ + + L+ L
Sbjct: 8 LVAQERTGTGKGAARQARRDGMVPGIVF-------GGDVDPLPINI-PFNVLIKKLREGR 59
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F S LF+++V + VRV+ R V H D P ++ F+R + + + +
Sbjct: 60 FKSTLFNMKVEGH-------DDVRVICRDVQRHVVKDLPTHIDFMRLKRTTKINLFIAVE 112
Query: 174 FRGDDVSPGLRKG 186
G+DV+PGL+KG
Sbjct: 113 VEGEDVAPGLKKG 125
>sp|A1UTH4|RL25_BARBK 50S ribosomal protein L25 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rplY PE=3 SV=1
Length = 205
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
EK++VLP+ L D P++V FLR ++++ +++P+ F +D +PG+++G
Sbjct: 71 EKIQVLPKDYQLDPVRDFPMHVDFLRVSAKSIVHVNIPVHFLNEDTAPGIKRG 123
>sp|A8LRY8|RL25_DINSH 50S ribosomal protein L25 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rplY PE=3 SV=1
Length = 211
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSF 113
++A PRA G + + R+ G VP +V+ G + + I ++ N+ L+ L
Sbjct: 8 LVAEPRAGTGKGAARQARRDGYVPGVVY-----GGGADPQPIQIKFNE---LLRRLKAGR 59
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F++ LF+L+V + E VRV+ R V D P ++ +R + + + +P+
Sbjct: 60 FMATLFNLKVEGQ-------EDVRVICRNVQRDVVKDLPTHLDLMRLRRTSKVNLFIPVE 112
Query: 174 FRGDDVSPGLRKG 186
F + +PG++KG
Sbjct: 113 FINEGAAPGIKKG 125
>sp|Q6G2L2|RL25_BARHE 50S ribosomal protein L25 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rplY PE=3 SV=1
Length = 206
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
+K+ VLP+ L D PL+V FLR ++++++++P+ F +D +PGL+KG
Sbjct: 71 QKIMVLPKDYQLDPVRDFPLHVDFLRISAKSIVEVNIPVHFLNEDSAPGLKKG 123
>sp|B6JIP4|RL25_OLICO 50S ribosomal protein L25 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplY PE=3 SV=1
Length = 240
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 16/111 (14%)
Query: 76 VPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEK 135
VP++++ G NK +++ + + L + F++ LF++++ + K
Sbjct: 29 VPAVIY-------GDNKPPVTISLDD-KALRQSIFAGHFLTTLFNIDLDGQ--------K 72
Query: 136 VRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
RV+PR L D PL+V FLR A +++ VPL +G ++SPG+++G
Sbjct: 73 YRVIPRDYALDPVKDFPLHVDFLRLGEGATIRVSVPLHVKGAELSPGVKRG 123
>sp|Q6G0F8|RL25_BARQU 50S ribosomal protein L25 OS=Bartonella quintana (strain Toulouse)
GN=rplY PE=3 SV=1
Length = 208
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
+K+ VLP+ L D P++V FLR ++++++ +P+ F +D +PGL+KG
Sbjct: 71 QKIMVLPKDYQLDPVRDFPIHVDFLRVSAQSVVEVSIPVHFFNEDTAPGLKKG 123
>sp|Q3SPM6|RL25_NITWN 50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=rplY PE=3 SV=1
Length = 228
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 22/114 (19%)
Query: 76 VPSIVFEQEDGQHGGNKRL---ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDL 132
VP++++ GNK+ ISV+ ++R+ + GR F++ +FD+ + +
Sbjct: 29 VPAVIY--------GNKQPPQPISVEEPELRQRI-LAGR--FLTTIFDINLDGK------ 71
Query: 133 IEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
K RV+PR HL D P++V F+R A +++ VPL DV+PG+++G
Sbjct: 72 --KHRVIPRDFHLDPVKDFPIHVDFMRLGEGATIRVSVPLRLLKADVAPGVKRG 123
>sp|A8EY64|RL25_RICCK 50S ribosomal protein L25 OS=Rickettsia canadensis (strain McKiel)
GN=rplY PE=3 SV=1
Length = 204
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 17/131 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AQSRTEFGTGAARALRREGRVPAIIY-------GAGKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + + +VLP+ V LH TD +V F+ E K++VP+V+
Sbjct: 61 SQLINLTIDKK--------QYKVLPKAVELHPVTDIVRHVDFVFL-EEKKQKMEVPVVYE 111
Query: 176 GDDVSPGLRKG 186
G + + G+++G
Sbjct: 112 GKERALGVKRG 122
>sp|Q8Y2E2|RL25_RALSO 50S ribosomal protein L25 OS=Ralstonia solanacearum (strain
GMI1000) GN=rplY PE=3 SV=1
Length = 206
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSF 113
++A R+ GT S + R AG+ P+I++ G +LI + N + L +
Sbjct: 3 VVAFERSVQGTGASRRLRNAGKTPAIIYGA-----GAEPKLIELDHNALYHA---LKKEA 54
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F S + D+EV + +EK L R LH L+V F R + + VPL
Sbjct: 55 FHSSILDIEVAGK------VEKA--LLRDFQLHPFKQLVLHVDFQRVSATEKIHVKVPLH 106
Query: 174 FRGDDVSPGLRKG 186
F + +PG++ G
Sbjct: 107 FLNQETAPGVKLG 119
>sp|B9KMG3|RL25_RHOSK 50S ribosomal protein L25 OS=Rhodobacter sphaeroides (strain KD131
/ KCTC 12085) GN=rplY PE=3 SV=1
Length = 203
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
R G + + R+ G VP IV+ GG + +S+ L+ L + F+ L
Sbjct: 13 RTGTGKGAARQARREGYVPGIVY-------GGGQEPLSINV-PYNDLLNRLKKGRFLQTL 64
Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
F+L+V + E VRV+ R V D P +V F+R + + + + + F D
Sbjct: 65 FNLKVEGQ-------EDVRVICRGVQRDVVKDLPTHVDFMRLRRTSRVNLFIHVTFENHD 117
Query: 179 VSPGLRKG 186
+PGL++G
Sbjct: 118 KAPGLKRG 125
>sp|Q3IZM8|RL25_RHOS4 50S ribosomal protein L25 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplY PE=3 SV=1
Length = 203
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
R G + + R+ G VP IV+ GG + +S+ L+ L + F+ L
Sbjct: 13 RTGTGKGAARQARREGYVPGIVY-------GGGQEPLSINV-PYNDLLNRLKKGRFLQTL 64
Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
F+L+V + E VRV+ R V D P +V F+R + + + + + F D
Sbjct: 65 FNLKVEGQ-------EDVRVICRGVQRDVVKDLPTHVDFMRLRRTSRVNLFIHVTFENHD 117
Query: 179 VSPGLRKG 186
+PGL++G
Sbjct: 118 KAPGLKRG 125
>sp|A3PMM1|RL25_RHOS1 50S ribosomal protein L25 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplY PE=3 SV=1
Length = 203
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
R G + + R+ G VP IV+ GG + +S+ L+ L + F+ L
Sbjct: 13 RTGTGKGAARQARREGYVPGIVY-------GGGQEPLSINV-PYNDLLNRLKKGRFLQTL 64
Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
F+L+V + E VRV+ R V D P +V F+R + + + + + F D
Sbjct: 65 FNLKVEGQ-------EDVRVICRGVQRDVVKDLPTHVDFMRLRRTSRVNLFIHVTFENHD 117
Query: 179 VSPGLRKG 186
+PGL++G
Sbjct: 118 KAPGLKRG 125
>sp|Q9PA77|RL25_XYLFA 50S ribosomal protein L25 OS=Xylella fastidiosa (strain 9a5c)
GN=rplY PE=3 SV=1
Length = 208
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLG 110
+ I A R G S + R AG +P+I++ GG +R +S+Q N + +
Sbjct: 3 NHQIKAQRRKDEGKGASRRLRHAGMIPAIIY-------GGEQRPVSIQLNHEQIWLAQQN 55
Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
F+ S + DL V + G G+ +VL R + H ++V F R +A L + V
Sbjct: 56 EWFY-SSILDLNV--DGGGGE-----KVLLRDLQRHPYRQLVMHVDFQRVSSDAKLSVAV 107
Query: 171 PLVFRGDDVSPG 182
PL F SP
Sbjct: 108 PLHFINQATSPA 119
>sp|Q87A23|RL25_XYLFT 50S ribosomal protein L25 OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=rplY PE=3 SV=1
Length = 207
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLG 110
+ I A R G S + R AG +P+I++ GG +R +S+Q N + +
Sbjct: 3 NHQIKAQRRKDEGKGASRRLRHAGMIPAIIY-------GGEQRPVSIQLNHEQIWLAQQN 55
Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
F+ S + DL V G+G +VL R + H ++V F R +A L + V
Sbjct: 56 EWFY-SSILDLNVD---GAG----AEKVLLRDLQRHPYRQLVMHVDFQRVSSDAKLSVAV 107
Query: 171 PLVFRGDDVSPGLRKG 186
PL F SP + G
Sbjct: 108 PLHFINQATSPAGKVG 123
>sp|B2IA79|RL25_XYLF2 50S ribosomal protein L25 OS=Xylella fastidiosa (strain M23)
GN=rplY PE=3 SV=1
Length = 207
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLG 110
+ I A R G S + R AG +P+I++ GG +R +S+Q N + +
Sbjct: 3 NHQIKAQRRKDEGKGASRRLRHAGMIPAIIY-------GGEQRPVSIQLNHEQIWLAQQN 55
Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
F+ S + DL V G+G +VL R + H ++V F R +A L + V
Sbjct: 56 EWFY-SSILDLNVD---GAG----AEKVLLRDLQRHPYRQLVMHVDFQRVSSDAKLSVAV 107
Query: 171 PLVFRGDDVSPGLRKG 186
PL F SP + G
Sbjct: 108 PLHFINQATSPAGKVG 123
>sp|B2UER5|RL25_RALPJ 50S ribosomal protein L25 OS=Ralstonia pickettii (strain 12J)
GN=rplY PE=3 SV=1
Length = 208
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSF 113
++A R+ GT S + R +G+ P+I++ G +LI + N + L +
Sbjct: 3 VVAFERSVQGTGASRRLRNSGKTPAIIYGA-----GAEPKLIELDHNALYHA---LKKEA 54
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F S + D+EV + +EK L R LH L+V F R + + + VPL
Sbjct: 55 FHSSILDIEVAGK------VEKA--LLRDFQLHPFKQLVLHVDFQRVSAKEKIHVKVPLH 106
Query: 174 FRGDDVSPGLRKG 186
F + +PG++ G
Sbjct: 107 FLNQETAPGVKLG 119
>sp|B3Q7X4|RL25_RHOPT 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplY PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 11/92 (11%)
Query: 95 ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLN 154
ISV+ ++R + GR F++ +FD+ + + K RV+PR HL D P++
Sbjct: 43 ISVEEKELRLRI-LAGR--FLTTVFDVVLDGK--------KHRVIPRDYHLDPVRDFPIH 91
Query: 155 VTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
V FLR A +++ VPL +G +V+PG+++G
Sbjct: 92 VDFLRLGAGATIRVSVPLHLKGLEVAPGVKRG 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,573,279
Number of Sequences: 539616
Number of extensions: 3090399
Number of successful extensions: 6877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 6706
Number of HSP's gapped (non-prelim): 202
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)