Query 029787
Match_columns 188
No_of_seqs 114 out of 1062
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1feu_A 50S ribosomal protein L 100.0 2.6E-33 9E-38 234.4 12.6 114 51-188 2-116 (206)
2 2zjr_S 50S ribosomal protein L 100.0 7.1E-32 2.4E-36 230.2 4.9 110 58-188 2-112 (237)
3 1b75_A Protein (50S ribosomal 100.0 1.9E-30 6.6E-35 192.8 3.5 93 52-160 2-94 (94)
4 2lyx_A Uncharacterized protein 55.4 21 0.00072 25.6 4.9 37 116-159 48-84 (87)
5 1q7l_B Aminoacylase-1; catalys 29.8 57 0.002 21.8 3.7 25 59-84 21-45 (88)
6 2e56_A Lymphocyte antigen 96; 29.6 24 0.00083 27.6 1.9 40 140-182 74-113 (144)
7 3mtx_A Protein MD-1; LY86, RP1 29.2 95 0.0033 24.3 5.3 40 140-182 76-115 (151)
8 3vq2_C Lymphocyte antigen 96; 13.3 87 0.003 24.4 1.9 26 157-182 88-113 (144)
9 3mxn_A RECQ-mediated genome in 12.0 2.3E+02 0.0079 22.2 4.0 66 33-106 19-86 (157)
10 3m7o_A Lymphocyte antigen 86; 9.3 68 0.0023 25.4 0.0 26 157-182 111-136 (162)
No 1
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=100.00 E-value=2.6e-33 Score=234.39 Aligned_cols=114 Identities=24% Similarity=0.379 Sum_probs=105.4
Q ss_pred ceEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEE-CCccCC
Q 029787 51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEV-RSEFGS 129 (188)
Q Consensus 51 ~~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v-~g~~~~ 129 (188)
..+|+|+.|+ |+++|||||+|+|||||||+ |.+ ++|+++.++|.+++++ .+.|++|+|++ +|+
T Consensus 2 ~~~l~a~~R~---k~aarrLRr~G~VPaVvYG~-----~~e-~~i~v~~~el~~~l~~----~~~~~vi~L~i~~G~--- 65 (206)
T 1feu_A 2 EYRLKAYYRE---GEKPSALRRAGKLPGLMYNR-----HLN-RKVYVDLVEFDKVFRQ----ASIHHVIVLELPDGQ--- 65 (206)
T ss_dssp EEEEECEECS---SSCHHHHHHTTEEEEEEECS-----SCE-EEEEEEHHHHHHHHHH----HTTTSEEEEECTTSC---
T ss_pred ceEEEEEEeC---ChHHHHHHHCCCceEEEEcC-----Cce-EEEEEcHHHHHHHHhh----cCCcEEEEEEEcCCC---
Confidence 3789999999 88899999999999999998 567 9999999999999985 23478999999 875
Q ss_pred CCCcceEeEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787 130 GDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME 188 (188)
Q Consensus 130 g~~~e~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~ 188 (188)
+++|++|+||+||++++++||||+++++ ++|+++|||+|+|+ |+|+|+||+
T Consensus 66 -----~~~vlikdvQ~hpv~~~i~HvDF~~v~~-~~v~v~VPv~~~G~--~~gvk~GG~ 116 (206)
T 1feu_A 66 -----SLPTLVRQVNLDKRRRRPEHVDFFVLSD-EPVEMYVPLRFVGT--PAGVRAGGV 116 (206)
T ss_dssp -----EEEEEEEEEEECSSSSCEEEEEEEECCS-SCEEEEEEEEEESC--CHHHHTTCE
T ss_pred -----EEEEEEEEeEeCCCCCCeEEEEEEEECC-EEEEEEeeEEEEcC--cccccCceE
Confidence 8899999999999999999999999999 99999999999999 789999984
No 2
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ...
Probab=99.97 E-value=7.1e-32 Score=230.16 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=102.3
Q ss_pred EcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECC-ccCCCCCcceE
Q 029787 58 PRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRS-EFGSGDLIEKV 136 (188)
Q Consensus 58 ~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g-~~~~g~~~e~~ 136 (188)
+|+..||+++||| |+|+||||||| + .++++|+++.++|.+++++ .+.+++|+|+|+| + ++
T Consensus 2 ~R~~~GKgaaRrL-r~G~VPaVvYG-g-----~e~v~i~v~~~el~k~l~~----~~~~~li~L~IdG~~--------~~ 62 (237)
T 2zjr_S 2 ELTAKPRTPKQKL-DESMIAAVAYN-K-----ENNVSFALDRKAFDRAFRQ----QSTTGLFDITVEGGE--------TF 62 (237)
T ss_dssp CCCBCCSCCHHHH-SSSCCCEEEES-S-----SCCCCCBCCHHHHHHHHHH----HTTSCCCBCCCTTCC--------CC
T ss_pred cccccCcHHHHHH-hCCCCCEEEeC-C-----CCCEEEEECHHHHHHHHHh----cCCcEEEEEEECCce--------eE
Confidence 5999999999999 99999999999 4 5899999999999999985 2347899999998 5 77
Q ss_pred eEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787 137 RVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME 188 (188)
Q Consensus 137 ~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~ 188 (188)
+||+|+||+||++++++||||++++++++|+++|||+|+|+ |+|+|+||+
T Consensus 63 ~vliKdvQ~hPvk~~ilHVDF~~V~~~ekV~v~VPV~~vGe--~~GvK~GGv 112 (237)
T 2zjr_S 63 PALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEVQGGL 112 (237)
T ss_dssp BCCEEEEEECSSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTTTTSE
T ss_pred EEEEEEEEecCCCCCeEEEEEEEECCCCEEEEEEeEEEecC--CccccCCcE
Confidence 89999999999999999999999999999999999999999 789999984
No 3
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=99.96 E-value=1.9e-30 Score=192.81 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=85.6
Q ss_pred eEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCC
Q 029787 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGD 131 (188)
Q Consensus 52 ~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~ 131 (188)
++|+|++|++.||+++|+||++|+|||||||+ +.++++|+++.+++.+++++ .++.+++|+|+++|+
T Consensus 2 ~~l~a~~R~~~Gk~~arrLRr~G~vPaVvYG~-----~~e~~~i~v~~~~~~~~l~~---~~~~~~~i~L~i~G~----- 68 (94)
T 1b75_A 2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGG-----KEAPLAIELDHDKVMNMQAK---AEFYSEVLTIVVDGK----- 68 (94)
T ss_dssp CCEEECSSCCSSSSSSSSTTTTTBCCEEEECS-----SSCCEEECCBSHHHHHHHTT---THHHHTCEEEEESSC-----
T ss_pred eEEEEEEecccCChHHHHHHHCCCceEEEECC-----CCCCEEEEECHHHHHHHHhc---cCcceEEEEEEECCE-----
Confidence 57999999999999999999999999999998 57899999999999999974 445678999999985
Q ss_pred CcceEeEEEeeeeccCCCCCceeEEeEEe
Q 029787 132 LIEKVRVLPRKVHLHSGTDAPLNVTFLRA 160 (188)
Q Consensus 132 ~~e~~~vliKeVQ~hpvt~~ilHVDF~~v 160 (188)
++.|++||||+||++++++||||++|
T Consensus 69 ---~~~vlikdvQ~hp~~~~i~HvDF~~v 94 (94)
T 1b75_A 69 ---EIKVKAQDVQRHPYKPKLQHIDFVRA 94 (94)
T ss_dssp ---EEEECCSEEECCSSSCCCCEEEEEBC
T ss_pred ---EEEEEEEEEEeCCCCCCeEEEEEEEC
Confidence 78899999999999999999999975
No 4
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=55.37 E-value=21 Score=25.63 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=28.2
Q ss_pred eEEEEEEECCccCCCCCcceEeEEEeeeeccCCCCCceeEEeEE
Q 029787 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLR 159 (188)
Q Consensus 116 s~v~~L~v~g~~~~g~~~e~~~vliKeVQ~hpvt~~ilHVDF~~ 159 (188)
...|.|.|..+ .+...+.-+|-+||.|++++-++|.+
T Consensus 48 ~E~Fklwl~e~-------~kefgV~V~I~f~p~T~kv~sI~~~E 84 (87)
T 2lyx_A 48 VKQYHLTLREG-------SKEFGVFVTISFDPYSQKVNKIAILE 84 (87)
T ss_dssp EEEEEEEEEET-------TEEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEEEEeC-------CEEEEEEEEEEEECCCCeEEEEEEEE
Confidence 34578888543 25555667899999999999999976
No 5
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=29.80 E-value=57 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.4
Q ss_pred cCCCCChHhHHHHHCCCCcEEEecCC
Q 029787 59 RASPGTRVSVKERKAGRVPSIVFEQE 84 (188)
Q Consensus 59 R~~~Gk~~arrLRr~G~VPgVvYG~~ 84 (188)
-...|...++.++..| +|++.||+.
T Consensus 21 ~~~~g~TDar~~~~~g-ip~v~fGPg 45 (88)
T 1q7l_B 21 EIMPAAGDNRYIRAVG-VPALGFSPM 45 (88)
T ss_dssp EECCSCSHHHHHHHTT-CCEEEECCC
T ss_pred eeeceeCcHHHHHHcC-CCEEEECCC
Confidence 3457888899999876 899999985
No 6
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=29.58 E-value=24 Score=27.57 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=32.1
Q ss_pred EeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCcc
Q 029787 140 PRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPG 182 (188)
Q Consensus 140 iKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~G 182 (188)
-|++=-++.-++. .|.+.-.||.|..++|+.|.|-..++|
T Consensus 74 ~ke~iC~g~dd~y---SFC~~lKGEti~t~~p~s~~g~~fpkG 113 (144)
T 2e56_A 74 RKEVICRGSDDDY---SFCRALKGETVNTTISFSFKGIKFSKG 113 (144)
T ss_dssp EEEECSCSSSSSC---GGGGCCTTCCEEEEEEEEECCCTTCCS
T ss_pred cccccccCCCCCc---eeeccccCceEEEeeecccCcEecCCC
Confidence 4555555555553 699999999999999999999988877
No 7
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*
Probab=29.22 E-value=95 Score=24.35 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=31.3
Q ss_pred EeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCcc
Q 029787 140 PRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPG 182 (188)
Q Consensus 140 iKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~G 182 (188)
-++.=-...-++. .|....+||.|..++||.+.|.+.++|
T Consensus 76 ~~e~LCe~~~~~~---sfC~~~KGE~i~~~~~v~~pg~~~p~G 115 (151)
T 3mtx_A 76 YSETLCGPGLSKL---IFCGKKKGEHLYYEGPITLGIKEIPQR 115 (151)
T ss_dssp EEEEEESTTCCCS---TTTTCCTTCEEEEEEEEECCCSSCCCE
T ss_pred cccccccCCCCcc---cccCccCCeeEEEEEEeecCceecCCC
Confidence 4444445555555 599999999999999999999877777
No 8
>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C*
Probab=13.35 E-value=87 Score=24.35 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.0
Q ss_pred eEEeCCCCeEEEEEeEEEEecCCCcc
Q 029787 157 FLRAPPEALLKIDVPLVFRGDDVSPG 182 (188)
Q Consensus 157 F~~v~~~~~V~v~VPV~f~Ged~s~G 182 (188)
|...-.||.|...+|+.+.|.+.+.|
T Consensus 88 fCg~~KGE~i~~~~~~~~~~~~fpkG 113 (144)
T 3vq2_C 88 FCRALKGETVNTSIPFSFEGILFPKG 113 (144)
T ss_dssp GGGCCTTCCEEEEEEEEECCCCCCSS
T ss_pred ecccccCcEEEEEEEeecCcEEccCC
Confidence 99999999999999999999987766
No 9
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=12.01 E-value=2.3e+02 Score=22.18 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCCCceecCC--CCCCCCCcceEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHH
Q 029787 33 PSAPLTYLDG--LPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV 106 (188)
Q Consensus 33 ~~~~~~~~~~--~~~~~~~~~~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kll 106 (188)
.|||+|||-. --.|+.....+|+|..=+-+|+=.. -+..=.|-|.|-- |..-..+.++..-|.+++
T Consensus 19 ~s~PFtYL~~l~~~~~~~~~~~kVKafI~tl~~~l~~--~~~~W~l~a~IsD------GS~~LdV~f~~~VLt~lI 86 (157)
T 3mxn_A 19 YSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSS--SGGIWSITAKVSD------GTAYLDVDFVDEILTSLI 86 (157)
T ss_dssp HCSSCCCHHHHHHTCCSSCEEEEEEEEEEEECSCCBC--GGGSCBCEEEEEC------SSCEEEEEECHHHHHHHH
T ss_pred CCCchHHHHHHHhhccCCceEEEEEEEEEEeccceee--cCCEEEEEEEEeC------CceeEEEEeeHHHHHhhh
Confidence 6799999854 1245667788889988877776322 1112234444442 445677777777776665
No 10
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*
Probab=9.26 E-value=68 Score=25.40 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.3
Q ss_pred eEEeCCCCeEEEEEeEEEEecCCCcc
Q 029787 157 FLRAPPEALLKIDVPLVFRGDDVSPG 182 (188)
Q Consensus 157 F~~v~~~~~V~v~VPV~f~Ged~s~G 182 (188)
|..+.+||.|...+|+.+-|.+.++|
T Consensus 111 fCp~~KGE~v~~~~~v~~p~~e~P~G 136 (162)
T 3m7o_A 111 FCGRRKGEQIYYAGPVNNPGLDVPQG 136 (162)
T ss_dssp STTCCTTCEEEEEEECCCCEEECCSE
T ss_pred cCCcCCCeEEEEEEEeecCceecCCC
Confidence 88999999999999999999767777
Done!