Query 029788
Match_columns 188
No_of_seqs 179 out of 1165
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 6.5E-70 1.4E-74 467.8 18.5 187 1-188 1-202 (361)
2 PTZ00023 glyceraldehyde-3-phos 100.0 6.2E-66 1.3E-70 442.8 20.5 184 1-187 1-185 (337)
3 PRK15425 gapA glyceraldehyde-3 100.0 7.1E-65 1.5E-69 435.3 20.7 181 3-187 2-183 (331)
4 PLN02237 glyceraldehyde-3-phos 100.0 2.5E-64 5.3E-69 442.3 20.1 184 3-188 75-263 (442)
5 PTZ00353 glycosomal glyceralde 100.0 4.1E-64 8.8E-69 431.6 20.2 181 3-184 2-183 (342)
6 PRK07403 glyceraldehyde-3-phos 100.0 5.2E-64 1.1E-68 430.6 19.8 181 4-187 2-187 (337)
7 PLN02272 glyceraldehyde-3-phos 100.0 9.1E-64 2E-68 437.9 21.0 184 4-188 86-269 (421)
8 PRK07729 glyceraldehyde-3-phos 100.0 9.5E-64 2.1E-68 429.5 20.3 182 3-187 2-185 (343)
9 COG0057 GapA Glyceraldehyde-3- 100.0 2.2E-63 4.7E-68 421.0 19.9 182 4-188 2-186 (335)
10 PLN02358 glyceraldehyde-3-phos 100.0 5E-63 1.1E-67 425.7 21.2 185 3-188 5-190 (338)
11 PLN03096 glyceraldehyde-3-phos 100.0 6.8E-63 1.5E-67 430.2 20.4 184 3-188 60-246 (395)
12 TIGR01534 GAPDH-I glyceraldehy 100.0 8.7E-63 1.9E-67 422.6 19.8 181 5-187 1-185 (327)
13 PRK13535 erythrose 4-phosphate 100.0 2.5E-61 5.4E-66 414.7 20.4 182 4-188 2-188 (336)
14 PRK08955 glyceraldehyde-3-phos 100.0 1.3E-60 2.9E-65 410.2 20.5 182 3-188 2-186 (334)
15 PRK08289 glyceraldehyde-3-phos 100.0 1.5E-60 3.3E-65 419.6 19.9 183 3-187 127-322 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 5.8E-58 1.3E-62 393.1 20.3 181 5-188 1-186 (325)
17 PF00044 Gp_dh_N: Glyceraldehy 100.0 7.7E-53 1.7E-57 325.9 11.7 149 4-154 1-151 (151)
18 smart00846 Gp_dh_N Glyceraldeh 100.0 2.3E-47 5.1E-52 295.1 16.4 148 4-154 1-149 (149)
19 KOG0657 Glyceraldehyde 3-phosp 100.0 1.2E-48 2.5E-53 322.0 5.6 169 14-188 1-169 (285)
20 TIGR01546 GAPDH-II_archae glyc 100.0 4.6E-41 9.9E-46 288.7 15.7 164 6-187 1-169 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 2.5E-36 5.5E-41 261.3 16.2 166 4-186 2-172 (341)
22 PRK06901 aspartate-semialdehyd 100.0 4.3E-32 9.2E-37 231.0 13.6 154 1-186 1-162 (322)
23 COG0136 Asd Aspartate-semialde 100.0 1.8E-29 4E-34 215.4 12.9 153 4-186 2-165 (334)
24 TIGR01745 asd_gamma aspartate- 100.0 8.2E-29 1.8E-33 214.9 10.6 155 4-186 1-166 (366)
25 PRK14874 aspartate-semialdehyd 100.0 1.4E-27 3.1E-32 206.2 14.5 149 4-185 2-160 (334)
26 TIGR01296 asd_B aspartate-semi 99.9 3.4E-26 7.4E-31 198.0 14.4 149 5-186 1-159 (339)
27 PRK06728 aspartate-semialdehyd 99.9 1.7E-25 3.7E-30 193.5 15.1 154 3-186 5-164 (347)
28 PRK08040 putative semialdehyde 99.9 6.4E-25 1.4E-29 189.6 15.9 152 2-186 3-164 (336)
29 PRK06598 aspartate-semialdehyd 99.9 2.2E-25 4.9E-30 193.9 12.4 153 4-186 2-167 (369)
30 PRK05671 aspartate-semialdehyd 99.9 3.9E-23 8.4E-28 178.6 15.0 151 3-186 4-163 (336)
31 PLN02383 aspartate semialdehyd 99.9 2.4E-22 5.3E-27 174.2 14.0 151 3-186 7-171 (344)
32 PRK08664 aspartate-semialdehyd 99.9 3.5E-22 7.5E-27 173.6 13.2 167 1-188 1-183 (349)
33 TIGR00978 asd_EA aspartate-sem 99.9 3.9E-21 8.4E-26 166.5 14.2 165 4-188 1-180 (341)
34 KOG4777 Aspartate-semialdehyde 99.8 4.1E-22 8.8E-27 164.2 3.9 166 1-186 1-185 (361)
35 PRK00436 argC N-acetyl-gamma-g 99.8 8E-20 1.7E-24 158.5 13.6 157 1-186 1-184 (343)
36 PRK11863 N-acetyl-gamma-glutam 99.8 3.3E-19 7E-24 152.6 12.4 138 3-185 2-147 (313)
37 TIGR01850 argC N-acetyl-gamma- 99.8 1.5E-18 3.1E-23 150.8 13.6 156 4-186 1-184 (346)
38 PLN02968 Probable N-acetyl-gam 99.8 1.9E-18 4.2E-23 151.7 13.1 156 3-186 38-219 (381)
39 PRK08300 acetaldehyde dehydrog 99.8 2.8E-18 6E-23 146.0 10.1 156 1-184 2-160 (302)
40 TIGR01851 argC_other N-acetyl- 99.7 2.2E-17 4.8E-22 140.9 11.2 137 4-185 2-146 (310)
41 TIGR03215 ac_ald_DH_ac acetald 99.6 1.2E-14 2.7E-19 123.1 11.1 151 4-185 2-155 (285)
42 PF01118 Semialdhyde_dh: Semia 99.3 8.7E-13 1.9E-17 98.2 3.6 113 5-143 1-119 (121)
43 COG0002 ArgC Acetylglutamate s 99.0 3.8E-09 8.3E-14 91.1 10.3 156 3-185 2-183 (349)
44 smart00859 Semialdhyde_dh Semi 98.7 3.8E-08 8.3E-13 72.9 6.6 113 5-142 1-120 (122)
45 PRK13303 L-aspartate dehydroge 98.3 3.4E-06 7.3E-11 70.9 8.5 145 4-183 2-148 (265)
46 TIGR01921 DAP-DH diaminopimela 98.2 3.5E-06 7.6E-11 72.8 7.3 91 1-125 1-91 (324)
47 PRK13301 putative L-aspartate 98.2 1.9E-06 4.1E-11 72.4 4.9 139 3-181 2-147 (267)
48 PRK13302 putative L-aspartate 98.2 9.5E-06 2.1E-10 68.5 8.2 89 1-119 4-93 (271)
49 TIGR00036 dapB dihydrodipicoli 98.1 7.1E-06 1.5E-10 69.0 6.0 95 4-123 2-97 (266)
50 COG0289 DapB Dihydrodipicolina 98.0 5E-05 1.1E-09 63.6 8.7 96 3-123 2-98 (266)
51 COG1712 Predicted dinucleotide 97.9 4.6E-05 1E-09 62.6 8.1 92 4-126 1-93 (255)
52 PRK06270 homoserine dehydrogen 97.9 4.6E-05 9.9E-10 66.3 8.5 34 3-36 2-44 (341)
53 PRK00048 dihydrodipicolinate r 97.9 3.6E-05 7.7E-10 64.4 6.5 84 4-119 2-86 (257)
54 PRK06349 homoserine dehydrogen 97.9 2.6E-05 5.6E-10 69.8 5.9 93 1-125 1-103 (426)
55 PRK13304 L-aspartate dehydroge 97.8 6.6E-05 1.4E-09 63.1 7.4 88 4-122 2-90 (265)
56 PF01408 GFO_IDH_MocA: Oxidore 97.7 0.00015 3.3E-09 52.7 6.4 94 4-127 1-95 (120)
57 PRK11579 putative oxidoreducta 97.5 0.0007 1.5E-08 58.6 9.5 94 1-126 1-96 (346)
58 PF01113 DapB_N: Dihydrodipico 97.5 0.00016 3.4E-09 54.0 4.7 92 4-119 1-93 (124)
59 COG0460 ThrA Homoserine dehydr 97.5 0.00035 7.5E-09 60.6 7.2 36 1-36 1-45 (333)
60 PRK06813 homoserine dehydrogen 97.5 0.0002 4.4E-09 62.5 5.8 34 3-36 2-44 (346)
61 PRK08374 homoserine dehydrogen 97.5 9.9E-05 2.2E-09 64.1 3.8 109 3-125 2-121 (336)
62 PRK06392 homoserine dehydrogen 97.4 0.00018 3.8E-09 62.4 4.4 33 4-36 1-40 (326)
63 PLN02775 Probable dihydrodipic 97.3 0.00084 1.8E-08 57.1 7.4 33 3-36 11-44 (286)
64 PF03447 NAD_binding_3: Homose 97.2 0.00032 6.9E-09 51.4 3.0 86 10-126 1-90 (117)
65 COG4569 MhpF Acetaldehyde dehy 97.1 0.0038 8.3E-08 51.0 8.5 133 3-166 4-142 (310)
66 COG4091 Predicted homoserine d 97.0 0.0012 2.5E-08 57.7 5.4 43 3-45 17-59 (438)
67 COG0673 MviM Predicted dehydro 97.0 0.0046 1E-07 52.7 8.6 97 1-126 1-99 (342)
68 cd01076 NAD_bind_1_Glu_DH NAD( 96.9 0.022 4.8E-07 46.9 11.4 34 2-36 30-63 (227)
69 PRK05447 1-deoxy-D-xylulose 5- 96.9 0.0035 7.7E-08 55.4 7.1 112 4-125 2-122 (385)
70 cd05211 NAD_bind_Glu_Leu_Phe_V 96.8 0.022 4.8E-07 46.6 10.9 36 2-38 22-57 (217)
71 cd05313 NAD_bind_2_Glu_DH NAD( 96.7 0.016 3.4E-07 48.7 9.7 106 3-125 38-153 (254)
72 PRK09414 glutamate dehydrogena 96.7 0.0077 1.7E-07 54.4 7.8 100 3-123 232-341 (445)
73 TIGR02130 dapB_plant dihydrodi 96.6 0.0045 9.8E-08 52.5 5.9 29 4-33 1-30 (275)
74 PRK10206 putative oxidoreducta 96.6 0.0096 2.1E-07 51.7 7.7 93 4-126 2-96 (344)
75 PLN02819 lysine-ketoglutarate 96.4 0.011 2.4E-07 58.4 7.5 98 3-126 569-679 (1042)
76 KOG4354 N-acetyl-gamma-glutamy 96.2 0.016 3.4E-07 48.5 6.5 33 3-35 19-52 (340)
77 PRK05472 redox-sensing transcr 96.0 0.019 4.2E-07 46.5 6.3 95 3-126 84-179 (213)
78 COG1748 LYS9 Saccharopine dehy 96.0 0.031 6.8E-07 49.6 7.9 97 4-123 2-98 (389)
79 PLN02477 glutamate dehydrogena 96.0 0.11 2.3E-06 46.6 11.1 34 3-37 206-239 (410)
80 PRK07819 3-hydroxybutyryl-CoA 95.9 0.043 9.3E-07 46.5 7.9 149 4-172 6-180 (286)
81 COG2344 AT-rich DNA-binding pr 95.8 0.023 4.9E-07 45.8 5.4 95 3-126 84-179 (211)
82 PRK14030 glutamate dehydrogena 95.7 0.096 2.1E-06 47.4 9.9 105 3-123 228-341 (445)
83 PRK09436 thrA bifunctional asp 95.7 0.022 4.7E-07 55.2 6.1 35 2-36 464-506 (819)
84 PLN02696 1-deoxy-D-xylulose-5- 95.6 0.05 1.1E-06 49.2 7.6 112 4-125 58-180 (454)
85 PF02826 2-Hacid_dh_C: D-isome 95.6 0.022 4.8E-07 44.8 4.8 32 4-36 37-68 (178)
86 COG0569 TrkA K+ transport syst 95.6 0.044 9.5E-07 45.0 6.6 98 4-127 1-102 (225)
87 PRK09466 metL bifunctional asp 95.5 0.011 2.3E-07 57.2 3.1 36 1-36 456-500 (810)
88 PF03435 Saccharop_dh: Sacchar 95.4 0.029 6.3E-07 49.2 5.4 97 6-125 1-97 (386)
89 PLN02700 homoserine dehydrogen 95.4 0.016 3.5E-07 51.2 3.8 36 1-36 1-44 (377)
90 PTZ00079 NADP-specific glutama 95.3 0.13 2.8E-06 46.6 9.3 103 4-123 238-350 (454)
91 PRK08229 2-dehydropantoate 2-r 95.2 0.13 2.9E-06 44.0 8.9 33 1-35 1-33 (341)
92 PF05368 NmrA: NmrA-like famil 95.2 0.027 5.9E-07 45.5 4.3 95 6-125 1-102 (233)
93 CHL00194 ycf39 Ycf39; Provisio 95.0 0.16 3.4E-06 43.2 8.4 30 5-35 2-32 (317)
94 COG1063 Tdh Threonine dehydrog 94.9 0.09 2E-06 45.8 6.9 102 5-128 171-273 (350)
95 PF13460 NAD_binding_10: NADH( 94.9 0.042 9.1E-07 42.4 4.4 30 6-36 1-31 (183)
96 PRK14031 glutamate dehydrogena 94.8 0.2 4.3E-06 45.3 9.1 104 3-124 228-341 (444)
97 PF13380 CoA_binding_2: CoA bi 94.8 0.15 3.3E-06 37.4 6.9 83 5-126 2-88 (116)
98 PF02629 CoA_binding: CoA bind 94.8 0.054 1.2E-06 38.3 4.3 93 3-126 3-95 (96)
99 PF03807 F420_oxidored: NADP o 94.5 0.11 2.4E-06 36.0 5.3 41 5-47 1-43 (96)
100 PF10727 Rossmann-like: Rossma 94.3 0.029 6.3E-07 42.2 2.1 33 3-36 10-42 (127)
101 PTZ00117 malate dehydrogenase; 94.3 0.16 3.5E-06 43.7 6.9 33 3-36 5-37 (319)
102 TIGR03736 PRTRC_ThiF PRTRC sys 94.2 0.13 2.7E-06 43.0 5.9 106 3-114 11-127 (244)
103 PF03446 NAD_binding_2: NAD bi 94.2 0.09 2E-06 40.6 4.7 30 4-34 2-31 (163)
104 cd08230 glucose_DH Glucose deh 94.1 0.91 2E-05 39.0 11.4 140 4-168 174-315 (355)
105 PTZ00082 L-lactate dehydrogena 94.1 0.16 3.4E-06 44.0 6.5 34 3-37 6-39 (321)
106 PRK08410 2-hydroxyacid dehydro 94.0 0.079 1.7E-06 45.6 4.4 31 4-35 146-176 (311)
107 PRK06487 glycerate dehydrogena 93.9 0.089 1.9E-06 45.3 4.7 31 4-35 149-179 (317)
108 PRK08507 prephenate dehydrogen 93.7 0.36 7.9E-06 40.3 7.9 30 5-34 2-32 (275)
109 COG0111 SerA Phosphoglycerate 93.6 0.1 2.2E-06 45.2 4.4 102 4-118 143-251 (324)
110 PRK07634 pyrroline-5-carboxyla 93.5 0.19 4E-06 41.0 5.7 35 1-35 1-39 (245)
111 PRK06932 glycerate dehydrogena 93.5 0.11 2.3E-06 44.8 4.4 30 4-34 148-177 (314)
112 TIGR01202 bchC 2-desacetyl-2-h 93.2 1.5 3.2E-05 37.0 10.9 124 5-168 147-271 (308)
113 PLN02928 oxidoreductase family 93.2 0.13 2.8E-06 44.9 4.4 31 4-35 160-190 (347)
114 PF00056 Ldh_1_N: lactate/mala 93.1 0.29 6.4E-06 37.1 5.8 79 4-105 1-81 (141)
115 PRK07574 formate dehydrogenase 93.1 0.14 3E-06 45.5 4.5 31 4-35 193-223 (385)
116 PRK00066 ldh L-lactate dehydro 93.0 0.66 1.4E-05 40.0 8.5 31 3-33 6-37 (315)
117 KOG1502 Flavonol reductase/cin 92.9 0.75 1.6E-05 40.0 8.7 47 3-50 6-53 (327)
118 PLN02256 arogenate dehydrogena 92.9 0.2 4.3E-06 43.0 5.1 34 2-36 35-68 (304)
119 cd01483 E1_enzyme_family Super 92.9 0.17 3.6E-06 38.0 4.2 28 5-33 1-29 (143)
120 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.22 4.7E-06 40.1 5.0 32 3-36 28-59 (200)
121 PRK06223 malate dehydrogenase; 92.8 0.27 5.8E-06 41.8 5.8 32 4-36 3-34 (307)
122 PRK06436 glycerate dehydrogena 92.8 0.16 3.5E-06 43.6 4.5 31 4-35 123-153 (303)
123 COG1052 LdhA Lactate dehydroge 92.8 0.15 3.3E-06 44.2 4.3 32 4-36 147-178 (324)
124 PRK11880 pyrroline-5-carboxyla 92.7 0.18 3.8E-06 41.8 4.4 24 1-25 1-24 (267)
125 PRK11199 tyrA bifunctional cho 92.7 0.6 1.3E-05 41.1 7.9 30 4-34 99-129 (374)
126 PRK13243 glyoxylate reductase; 92.7 0.17 3.7E-06 43.9 4.4 30 4-34 151-180 (333)
127 PRK15409 bifunctional glyoxyla 92.6 0.18 3.9E-06 43.6 4.5 29 4-33 146-175 (323)
128 PRK11790 D-3-phosphoglycerate 92.6 0.18 3.8E-06 45.1 4.5 30 4-34 152-181 (409)
129 PRK11559 garR tartronate semia 92.5 0.2 4.4E-06 42.2 4.6 32 1-34 1-32 (296)
130 TIGR03649 ergot_EASG ergot alk 92.5 0.33 7.2E-06 40.3 5.8 31 5-36 1-32 (285)
131 PRK12480 D-lactate dehydrogena 92.4 0.22 4.8E-06 43.2 4.7 31 4-35 147-177 (330)
132 COG2085 Predicted dinucleotide 92.3 0.65 1.4E-05 37.9 7.0 92 4-126 2-93 (211)
133 COG2910 Putative NADH-flavin r 92.2 0.21 4.5E-06 40.3 4.0 31 4-35 1-32 (211)
134 PRK15469 ghrA bifunctional gly 92.2 0.23 5E-06 42.8 4.6 31 4-35 137-167 (312)
135 PF02670 DXP_reductoisom: 1-de 92.1 0.32 6.9E-06 36.7 4.7 41 6-47 1-43 (129)
136 TIGR03366 HpnZ_proposed putati 92.0 1.6 3.4E-05 36.3 9.4 137 4-168 122-260 (280)
137 PRK09880 L-idonate 5-dehydroge 91.8 1.7 3.7E-05 37.1 9.6 94 4-123 171-265 (343)
138 PRK15438 erythronate-4-phospha 91.8 0.25 5.5E-06 43.8 4.5 30 4-34 117-146 (378)
139 PLN03139 formate dehydrogenase 91.7 0.24 5.2E-06 44.0 4.3 30 4-34 200-229 (386)
140 KOG4039 Serine/threonine kinas 91.6 1.1 2.4E-05 36.1 7.5 35 1-35 16-52 (238)
141 KOG0455 Homoserine dehydrogena 91.6 0.24 5.1E-06 41.9 3.8 36 1-36 1-44 (364)
142 PLN00016 RNA-binding protein; 91.2 0.68 1.5E-05 40.4 6.5 33 3-36 52-89 (378)
143 PRK11064 wecC UDP-N-acetyl-D-m 91.1 0.36 7.8E-06 43.1 4.8 34 1-35 1-34 (415)
144 PRK13403 ketol-acid reductoiso 91.0 0.37 8.1E-06 42.0 4.6 32 4-36 17-48 (335)
145 PLN02306 hydroxypyruvate reduc 90.9 0.36 7.9E-06 42.9 4.6 30 4-34 166-196 (386)
146 PLN02602 lactate dehydrogenase 90.8 0.43 9.3E-06 41.9 4.9 23 4-26 38-60 (350)
147 KOG2741 Dimeric dihydrodiol de 90.7 0.35 7.6E-06 42.3 4.2 34 3-36 6-41 (351)
148 cd01338 MDH_choloroplast_like 90.6 0.73 1.6E-05 39.9 6.1 24 3-26 2-26 (322)
149 PRK08644 thiamine biosynthesis 90.5 0.2 4.2E-06 40.8 2.4 24 3-26 28-51 (212)
150 PRK08605 D-lactate dehydrogena 90.5 0.43 9.3E-06 41.4 4.6 31 4-34 147-177 (332)
151 cd00755 YgdL_like Family of ac 90.3 1.4 3.1E-05 36.3 7.3 24 3-26 11-34 (231)
152 PRK07417 arogenate dehydrogena 90.2 0.47 1E-05 39.9 4.5 29 5-34 2-30 (279)
153 PRK00257 erythronate-4-phospha 90.2 0.45 9.7E-06 42.3 4.5 30 4-34 117-146 (381)
154 COG0039 Mdh Malate/lactate deh 90.1 1.2 2.6E-05 38.5 6.9 23 4-26 1-23 (313)
155 cd05293 LDH_1 A subgroup of L- 90.0 0.54 1.2E-05 40.5 4.8 31 3-33 3-34 (312)
156 PRK05808 3-hydroxybutyryl-CoA 89.9 0.55 1.2E-05 39.4 4.7 33 1-34 1-33 (282)
157 cd05294 LDH-like_MDH_nadp A la 89.8 0.82 1.8E-05 39.2 5.8 31 4-34 1-33 (309)
158 PLN02712 arogenate dehydrogena 89.8 0.52 1.1E-05 44.8 4.9 33 3-36 369-401 (667)
159 PLN02712 arogenate dehydrogena 89.8 0.52 1.1E-05 44.8 4.9 32 3-35 52-83 (667)
160 PRK07679 pyrroline-5-carboxyla 89.5 0.63 1.4E-05 39.0 4.7 34 1-34 1-37 (279)
161 TIGR01327 PGDH D-3-phosphoglyc 89.5 0.51 1.1E-05 43.5 4.5 30 4-34 139-168 (525)
162 TIGR02717 AcCoA-syn-alpha acet 89.4 1.8 4E-05 39.0 7.9 82 3-123 7-94 (447)
163 PRK13581 D-3-phosphoglycerate 89.4 0.52 1.1E-05 43.5 4.4 31 4-35 141-171 (526)
164 PRK06035 3-hydroxyacyl-CoA deh 89.1 0.75 1.6E-05 38.8 4.9 33 1-34 1-33 (291)
165 TIGR01761 thiaz-red thiazoliny 89.1 0.67 1.5E-05 40.6 4.7 33 3-36 3-36 (343)
166 COG0771 MurD UDP-N-acetylmuram 89.1 2.9 6.4E-05 38.0 8.9 89 3-119 7-95 (448)
167 PRK07502 cyclohexadienyl dehyd 89.0 0.76 1.6E-05 39.1 4.9 31 3-33 6-37 (307)
168 PRK05442 malate dehydrogenase; 89.0 0.85 1.8E-05 39.6 5.3 25 1-25 1-27 (326)
169 PRK00094 gpsA NAD(P)H-dependen 89.0 0.76 1.6E-05 38.9 4.9 31 4-35 2-32 (325)
170 PLN02545 3-hydroxybutyryl-CoA 88.8 0.8 1.7E-05 38.6 4.9 33 1-34 1-34 (295)
171 PRK07530 3-hydroxybutyryl-CoA 88.8 0.81 1.7E-05 38.6 4.9 31 3-34 4-34 (292)
172 PTZ00431 pyrroline carboxylate 88.4 0.55 1.2E-05 39.1 3.6 26 1-26 1-26 (260)
173 PF03721 UDPG_MGDP_dh_N: UDP-g 88.3 0.67 1.5E-05 36.8 3.9 30 4-34 1-30 (185)
174 PRK06249 2-dehydropantoate 2-r 88.1 0.86 1.9E-05 38.9 4.7 33 2-35 4-36 (313)
175 PF00208 ELFV_dehydrog: Glutam 88.1 0.94 2E-05 37.7 4.8 137 3-162 32-178 (244)
176 KOG0069 Glyoxylate/hydroxypyru 88.0 0.42 9.1E-06 41.7 2.7 22 4-25 163-184 (336)
177 PRK09599 6-phosphogluconate de 87.9 0.87 1.9E-05 38.6 4.6 30 5-35 2-31 (301)
178 PRK14618 NAD(P)H-dependent gly 87.7 1 2.2E-05 38.6 4.9 32 3-35 4-35 (328)
179 COG0334 GdhA Glutamate dehydro 87.7 5.6 0.00012 35.7 9.6 34 4-38 208-241 (411)
180 PF02737 3HCDH_N: 3-hydroxyacy 87.6 1 2.2E-05 35.6 4.5 150 5-173 1-173 (180)
181 TIGR02853 spore_dpaA dipicolin 87.6 0.92 2E-05 38.6 4.5 31 4-35 152-182 (287)
182 TIGR00243 Dxr 1-deoxy-D-xylulo 87.4 0.91 2E-05 40.4 4.5 42 4-46 2-45 (389)
183 COG3804 Uncharacterized conser 87.4 0.96 2.1E-05 38.8 4.4 34 3-36 2-35 (350)
184 PLN02662 cinnamyl-alcohol dehy 87.4 4.8 0.0001 33.7 8.8 31 4-35 5-36 (322)
185 cd01486 Apg7 Apg7 is an E1-lik 87.1 0.3 6.6E-06 42.1 1.3 22 5-26 1-22 (307)
186 PRK12490 6-phosphogluconate de 87.1 1.1 2.3E-05 38.1 4.6 29 5-34 2-30 (299)
187 PRK06718 precorrin-2 dehydroge 87.0 10 0.00023 30.4 10.2 30 4-34 11-40 (202)
188 PLN03209 translocon at the inn 86.9 2.8 6.2E-05 39.2 7.6 31 4-35 81-112 (576)
189 cd00757 ThiF_MoeB_HesA_family 86.8 0.52 1.1E-05 38.5 2.5 32 3-35 21-52 (228)
190 PRK03369 murD UDP-N-acetylmura 86.6 4.9 0.00011 36.6 9.0 83 4-118 13-95 (488)
191 PF01210 NAD_Gly3P_dh_N: NAD-d 86.6 2.1 4.5E-05 32.8 5.6 100 5-126 1-103 (157)
192 PRK06476 pyrroline-5-carboxyla 86.5 1.6 3.6E-05 36.0 5.4 32 5-36 2-34 (258)
193 TIGR00872 gnd_rel 6-phosphoglu 86.5 1.2 2.5E-05 37.9 4.5 29 5-34 2-30 (298)
194 cd08239 THR_DH_like L-threonin 86.5 2.5 5.3E-05 35.8 6.6 137 4-168 165-302 (339)
195 PRK05690 molybdopterin biosynt 86.5 0.4 8.6E-06 39.8 1.6 24 3-26 32-55 (245)
196 PLN02688 pyrroline-5-carboxyla 86.5 1.8 3.8E-05 35.8 5.6 33 4-36 1-36 (266)
197 cd08237 ribitol-5-phosphate_DH 86.4 5.4 0.00012 34.1 8.8 31 4-34 165-196 (341)
198 cd01487 E1_ThiF_like E1_ThiF_l 86.4 0.62 1.3E-05 36.6 2.7 24 5-29 1-24 (174)
199 TIGR01505 tartro_sem_red 2-hyd 86.3 0.95 2.1E-05 38.1 3.9 29 5-34 1-29 (291)
200 cd08281 liver_ADH_like1 Zinc-d 86.2 2.3 5E-05 36.8 6.4 99 4-126 193-292 (371)
201 PRK01438 murD UDP-N-acetylmura 85.9 4.8 0.00011 36.2 8.5 30 4-34 17-46 (480)
202 PRK11908 NAD-dependent epimera 85.8 1.5 3.2E-05 37.6 4.9 32 4-35 2-34 (347)
203 PRK14106 murD UDP-N-acetylmura 85.8 5.2 0.00011 35.6 8.6 30 3-33 5-34 (450)
204 PF02254 TrkA_N: TrkA-N domain 85.7 1.8 3.9E-05 30.8 4.6 29 6-35 1-29 (116)
205 TIGR02355 moeB molybdopterin s 85.7 0.44 9.5E-06 39.5 1.5 24 3-26 24-47 (240)
206 PRK08293 3-hydroxybutyryl-CoA 85.7 1.6 3.4E-05 36.7 5.0 33 1-34 1-33 (287)
207 PRK06928 pyrroline-5-carboxyla 85.6 1.6 3.4E-05 36.8 4.8 32 4-35 2-36 (277)
208 COG0287 TyrA Prephenate dehydr 85.5 1.5 3.2E-05 37.3 4.7 25 2-26 2-26 (279)
209 PRK12491 pyrroline-5-carboxyla 85.4 1.8 4E-05 36.4 5.2 24 3-26 2-25 (272)
210 PRK08219 short chain dehydroge 85.3 1.5 3.2E-05 34.6 4.3 33 1-35 1-34 (227)
211 PRK06130 3-hydroxybutyryl-CoA 85.2 1.7 3.7E-05 36.8 5.0 30 4-34 5-34 (311)
212 PRK05479 ketol-acid reductoiso 85.2 1.5 3.3E-05 38.2 4.7 32 3-35 17-48 (330)
213 COG0373 HemA Glutamyl-tRNA red 85.2 3.7 7.9E-05 37.0 7.2 32 4-35 179-210 (414)
214 COG1062 AdhC Zn-dependent alco 85.0 2.5 5.4E-05 37.2 5.8 90 4-116 187-277 (366)
215 COG0743 Dxr 1-deoxy-D-xylulose 84.9 1.4 3.1E-05 38.9 4.3 41 4-45 2-44 (385)
216 cd08298 CAD2 Cinnamyl alcohol 84.8 22 0.00047 29.7 11.6 128 4-168 169-296 (329)
217 cd08242 MDR_like Medium chain 84.7 9.1 0.0002 31.9 9.2 85 4-120 157-241 (319)
218 PRK15116 sulfur acceptor prote 84.6 1.4 3E-05 37.3 4.1 24 3-26 30-53 (268)
219 PRK15461 NADH-dependent gamma- 84.5 1.6 3.4E-05 37.1 4.4 30 4-34 2-31 (296)
220 PRK14619 NAD(P)H-dependent gly 84.5 1.7 3.6E-05 37.1 4.6 32 3-35 4-35 (308)
221 TIGR00465 ilvC ketol-acid redu 84.5 1.8 4E-05 37.3 4.9 33 3-36 3-35 (314)
222 TIGR02356 adenyl_thiF thiazole 84.4 0.75 1.6E-05 36.9 2.3 31 3-34 21-52 (202)
223 TIGR02437 FadB fatty oxidation 84.4 0.98 2.1E-05 43.3 3.4 30 4-34 314-343 (714)
224 PTZ00075 Adenosylhomocysteinas 84.3 1.7 3.6E-05 39.8 4.7 30 4-34 255-284 (476)
225 TIGR02441 fa_ox_alpha_mit fatt 84.1 0.64 1.4E-05 44.7 2.0 38 4-45 336-373 (737)
226 PRK11154 fadJ multifunctional 84.0 8.3 0.00018 37.0 9.5 153 4-176 310-487 (708)
227 PLN02586 probable cinnamyl alc 83.7 8.4 0.00018 33.3 8.7 31 4-35 185-215 (360)
228 PRK12475 thiamine/molybdopteri 83.6 1.3 2.9E-05 38.5 3.7 32 3-35 24-55 (338)
229 PRK08818 prephenate dehydrogen 83.5 1.9 4.1E-05 38.2 4.6 31 3-33 4-35 (370)
230 PRK09496 trkA potassium transp 83.3 1.8 4E-05 38.4 4.5 30 5-35 2-31 (453)
231 KOG0068 D-3-phosphoglycerate d 83.2 1.9 4.1E-05 37.9 4.4 31 4-35 147-177 (406)
232 cd00704 MDH Malate dehydrogena 83.2 3.5 7.7E-05 35.7 6.1 23 4-26 1-24 (323)
233 PRK06129 3-hydroxyacyl-CoA deh 83.2 2 4.3E-05 36.6 4.5 31 4-35 3-33 (308)
234 TIGR03026 NDP-sugDHase nucleot 83.2 1.7 3.7E-05 38.5 4.3 29 5-34 2-30 (411)
235 COG0345 ProC Pyrroline-5-carbo 83.1 2.9 6.3E-05 35.4 5.4 38 4-44 2-42 (266)
236 PRK03659 glutathione-regulated 82.9 2.2 4.8E-05 40.0 5.1 39 4-46 401-439 (601)
237 PRK15059 tartronate semialdehy 82.9 2.1 4.4E-05 36.4 4.5 29 5-34 2-30 (292)
238 cd01484 E1-2_like Ubiquitin ac 82.9 1.3 2.8E-05 36.7 3.1 22 5-26 1-22 (234)
239 PRK11730 fadB multifunctional 82.8 1.8 3.9E-05 41.5 4.4 30 4-34 314-343 (715)
240 PRK06522 2-dehydropantoate 2-r 82.7 2.3 4.9E-05 35.5 4.7 30 5-35 2-31 (304)
241 TIGR03201 dearomat_had 6-hydro 82.7 17 0.00038 31.0 10.2 139 4-168 168-312 (349)
242 PRK07531 bifunctional 3-hydrox 82.5 2.3 5E-05 38.9 4.9 30 4-34 5-34 (495)
243 KOG1399 Flavin-containing mono 82.3 1.9 4.2E-05 39.1 4.3 31 2-33 5-35 (448)
244 TIGR01759 MalateDH-SF1 malate 82.2 3.6 7.9E-05 35.6 5.8 24 3-26 3-27 (323)
245 PRK03562 glutathione-regulated 82.2 2.3 5E-05 40.0 4.9 39 4-46 401-439 (621)
246 PRK00683 murD UDP-N-acetylmura 82.2 2.4 5.2E-05 37.6 4.8 33 1-34 1-33 (418)
247 PRK08306 dipicolinate synthase 82.1 2.5 5.3E-05 36.1 4.7 32 3-35 152-183 (296)
248 PRK07877 hypothetical protein; 81.9 0.48 1E-05 45.4 0.3 117 3-126 107-228 (722)
249 TIGR02354 thiF_fam2 thiamine b 81.8 0.86 1.9E-05 36.7 1.7 33 3-36 21-53 (200)
250 PRK07680 late competence prote 81.6 3.7 8.1E-05 34.2 5.5 22 5-26 2-23 (273)
251 PRK09260 3-hydroxybutyryl-CoA 81.5 2.5 5.4E-05 35.5 4.5 30 4-34 2-31 (288)
252 cd05213 NAD_bind_Glutamyl_tRNA 81.4 2.5 5.4E-05 36.2 4.5 32 3-34 178-209 (311)
253 KOG3923 D-aspartate oxidase [A 81.3 1.9 4E-05 37.4 3.6 36 1-36 1-42 (342)
254 PLN02494 adenosylhomocysteinas 81.0 2.6 5.7E-05 38.5 4.6 30 4-34 255-284 (477)
255 cd08301 alcohol_DH_plants Plan 80.9 5.3 0.00011 34.4 6.4 31 4-35 189-220 (369)
256 KOG0024 Sorbitol dehydrogenase 80.9 3.7 8E-05 35.9 5.2 30 93-123 242-271 (354)
257 PRK08268 3-hydroxy-acyl-CoA de 80.8 2.9 6.2E-05 38.5 4.9 30 4-34 8-37 (507)
258 PRK07236 hypothetical protein; 80.7 2.7 5.8E-05 36.6 4.6 33 1-34 4-36 (386)
259 PF04321 RmlD_sub_bind: RmlD s 80.7 2.9 6.2E-05 35.2 4.5 32 4-36 1-33 (286)
260 PRK02318 mannitol-1-phosphate 80.5 2.3 4.9E-05 37.5 4.0 31 4-34 1-31 (381)
261 TIGR03451 mycoS_dep_FDH mycoth 80.4 21 0.00046 30.5 10.0 30 4-34 178-208 (358)
262 PRK07066 3-hydroxybutyryl-CoA 80.3 3.4 7.3E-05 35.8 4.9 31 4-36 8-38 (321)
263 PRK05653 fabG 3-ketoacyl-(acyl 80.3 4.2 9.1E-05 32.1 5.2 32 3-35 5-37 (246)
264 PTZ00142 6-phosphogluconate de 80.2 2.5 5.4E-05 38.6 4.3 31 4-35 2-32 (470)
265 TIGR01915 npdG NADPH-dependent 80.1 3.5 7.6E-05 33.2 4.8 29 5-34 2-31 (219)
266 PLN02427 UDP-apiose/xylose syn 79.9 3.3 7.3E-05 36.0 4.9 33 3-35 14-47 (386)
267 TIGR00936 ahcY adenosylhomocys 79.8 2.9 6.3E-05 37.5 4.5 30 4-34 196-225 (406)
268 PLN02514 cinnamyl-alcohol dehy 79.6 21 0.00045 30.7 9.7 138 4-174 182-320 (357)
269 PRK04690 murD UDP-N-acetylmura 79.4 19 0.00042 32.5 9.8 31 4-36 9-39 (468)
270 cd01065 NAD_bind_Shikimate_DH 79.4 4.5 9.8E-05 30.2 4.9 33 3-36 19-51 (155)
271 PLN02178 cinnamyl-alcohol dehy 79.1 16 0.00035 31.8 9.0 31 4-35 180-210 (375)
272 PTZ00325 malate dehydrogenase; 78.8 3.9 8.4E-05 35.5 4.8 24 3-26 8-32 (321)
273 PLN02353 probable UDP-glucose 78.7 3.8 8.3E-05 37.4 5.0 31 4-34 2-33 (473)
274 cd01339 LDH-like_MDH L-lactate 78.7 4.4 9.6E-05 34.3 5.1 30 6-36 1-30 (300)
275 TIGR01019 sucCoAalpha succinyl 78.5 9.2 0.0002 32.7 7.0 87 3-123 6-93 (286)
276 PRK05600 thiamine biosynthesis 78.4 1.2 2.5E-05 39.4 1.5 24 3-26 41-64 (370)
277 cd01336 MDH_cytoplasmic_cytoso 78.3 4.2 9E-05 35.2 4.9 32 3-34 2-40 (325)
278 PRK10669 putative cation:proto 78.3 3.8 8.1E-05 37.9 4.9 31 4-35 418-448 (558)
279 KOG0022 Alcohol dehydrogenase, 78.3 8 0.00017 33.9 6.5 97 4-123 194-293 (375)
280 cd05291 HicDH_like L-2-hydroxy 78.2 4.1 8.9E-05 34.7 4.8 30 5-34 2-32 (306)
281 PF01262 AlaDh_PNT_C: Alanine 78.1 5.1 0.00011 31.0 4.9 32 3-35 20-51 (168)
282 cd01490 Ube1_repeat2 Ubiquitin 77.9 2.2 4.7E-05 38.6 3.1 21 5-25 1-21 (435)
283 TIGR01087 murD UDP-N-acetylmur 77.7 13 0.00028 32.9 8.0 30 5-36 1-30 (433)
284 PRK12921 2-dehydropantoate 2-r 77.6 3.8 8.2E-05 34.3 4.4 31 4-35 1-31 (305)
285 PRK03806 murD UDP-N-acetylmura 77.6 22 0.00049 31.5 9.5 89 4-125 7-95 (438)
286 PF01488 Shikimate_DH: Shikima 77.5 5.3 0.00011 29.8 4.7 31 4-35 13-44 (135)
287 COG1023 Gnd Predicted 6-phosph 77.2 2.8 6.1E-05 35.3 3.3 43 4-50 1-43 (300)
288 PRK05597 molybdopterin biosynt 76.9 2 4.3E-05 37.6 2.6 24 3-26 28-51 (355)
289 cd05290 LDH_3 A subgroup of L- 76.9 3.9 8.4E-05 35.2 4.3 24 5-28 1-24 (307)
290 PRK06444 prephenate dehydrogen 76.9 3.5 7.6E-05 33.2 3.8 22 4-25 1-23 (197)
291 TIGR01381 E1_like_apg7 E1-like 76.9 1.3 2.7E-05 42.1 1.3 24 3-26 338-361 (664)
292 PRK06046 alanine dehydrogenase 76.7 4.7 0.0001 34.8 4.8 33 4-36 130-162 (326)
293 PRK10083 putative oxidoreducta 76.7 14 0.00031 31.0 7.7 100 4-126 162-261 (339)
294 PRK02006 murD UDP-N-acetylmura 76.6 23 0.00049 32.2 9.4 31 4-36 8-38 (498)
295 COG1179 Dinucleotide-utilizing 76.5 3.2 6.8E-05 34.9 3.4 23 4-26 31-53 (263)
296 PF00743 FMO-like: Flavin-bind 76.5 5.5 0.00012 36.9 5.4 30 4-34 2-31 (531)
297 TIGR01470 cysG_Nterm siroheme 76.4 26 0.00055 28.2 8.7 30 4-34 10-39 (205)
298 PLN00141 Tic62-NAD(P)-related 76.1 5.4 0.00012 32.4 4.8 31 4-35 18-49 (251)
299 TIGR02818 adh_III_F_hyde S-(hy 76.0 7.6 0.00017 33.6 6.0 30 4-34 187-217 (368)
300 COG1064 AdhP Zn-dependent alco 75.9 24 0.00051 31.0 8.9 131 4-168 168-301 (339)
301 cd05292 LDH_2 A subgroup of L- 75.8 4.7 0.0001 34.5 4.5 22 5-26 2-23 (308)
302 PRK15181 Vi polysaccharide bio 75.7 5.2 0.00011 34.3 4.8 33 2-35 14-47 (348)
303 cd08255 2-desacetyl-2-hydroxye 75.7 23 0.00049 28.7 8.5 31 4-35 99-130 (277)
304 PRK15057 UDP-glucose 6-dehydro 75.6 4.3 9.3E-05 36.0 4.3 39 5-48 2-40 (388)
305 PLN02240 UDP-glucose 4-epimera 75.4 5.3 0.00011 33.9 4.7 32 3-35 5-37 (352)
306 PRK05476 S-adenosyl-L-homocyst 75.4 4.7 0.0001 36.4 4.5 29 4-33 213-241 (425)
307 PRK04663 murD UDP-N-acetylmura 75.3 21 0.00046 31.8 8.8 84 4-118 8-93 (438)
308 cd08296 CAD_like Cinnamyl alco 75.2 19 0.00041 30.4 8.1 96 5-126 166-261 (333)
309 TIGR01035 hemA glutamyl-tRNA r 75.0 5 0.00011 35.9 4.6 32 4-35 181-212 (417)
310 PRK06153 hypothetical protein; 75.0 1.9 4.1E-05 38.5 1.9 30 4-33 177-206 (393)
311 cd05191 NAD_bind_amino_acid_DH 75.0 7.5 0.00016 26.5 4.6 23 3-25 23-45 (86)
312 cd08284 FDH_like_2 Glutathione 74.9 11 0.00023 31.8 6.5 29 4-33 169-198 (344)
313 PRK05708 2-dehydropantoate 2-r 74.8 4.9 0.00011 34.2 4.3 32 3-35 2-33 (305)
314 PRK07326 short chain dehydroge 74.6 6 0.00013 31.3 4.6 31 4-35 7-38 (237)
315 cd08277 liver_alcohol_DH_like 73.7 21 0.00046 30.7 8.1 30 4-34 186-216 (365)
316 COG5322 Predicted dehydrogenas 73.6 14 0.00031 31.7 6.7 24 4-27 168-192 (351)
317 PRK06988 putative formyltransf 73.5 5.7 0.00012 34.2 4.4 32 1-34 1-32 (312)
318 PF02558 ApbA: Ketopantoate re 73.4 7.7 0.00017 28.8 4.7 30 6-36 1-30 (151)
319 PLN02740 Alcohol dehydrogenase 73.1 12 0.00026 32.5 6.4 30 4-34 200-230 (381)
320 cd08294 leukotriene_B4_DH_like 73.0 7.5 0.00016 32.4 5.0 31 4-35 145-176 (329)
321 PRK08223 hypothetical protein; 73.0 3.3 7.1E-05 35.5 2.8 24 3-26 27-50 (287)
322 PRK14573 bifunctional D-alanyl 73.0 24 0.00051 34.3 9.0 34 1-36 1-36 (809)
323 PRK10309 galactitol-1-phosphat 73.0 14 0.00031 31.3 6.8 29 4-33 162-191 (347)
324 PRK06545 prephenate dehydrogen 72.9 5.3 0.00011 34.9 4.2 22 5-26 2-23 (359)
325 KOG2380 Prephenate dehydrogena 72.9 4.6 9.9E-05 35.8 3.7 25 3-27 52-76 (480)
326 TIGR01757 Malate-DH_plant mala 72.7 8.5 0.00018 34.3 5.4 24 3-26 44-68 (387)
327 cd08287 FDH_like_ADH3 formalde 72.7 24 0.00052 29.7 8.1 136 5-168 171-308 (345)
328 PRK08655 prephenate dehydrogen 72.6 6.3 0.00014 35.5 4.7 29 5-34 2-31 (437)
329 PF00899 ThiF: ThiF family; I 72.6 7.4 0.00016 28.7 4.4 104 3-112 2-111 (135)
330 KOG1203 Predicted dehydrogenas 72.5 5.2 0.00011 36.0 4.0 31 3-34 79-110 (411)
331 cd05283 CAD1 Cinnamyl alcohol 72.5 36 0.00078 28.7 9.2 31 4-35 171-201 (337)
332 cd08245 CAD Cinnamyl alcohol d 72.3 26 0.00056 29.2 8.2 31 4-35 164-194 (330)
333 PF07991 IlvN: Acetohydroxy ac 72.3 6.5 0.00014 30.9 4.1 32 3-35 4-35 (165)
334 PRK00141 murD UDP-N-acetylmura 72.3 31 0.00068 31.2 9.1 31 4-36 16-46 (473)
335 cd08278 benzyl_alcohol_DH Benz 72.1 13 0.00028 32.0 6.4 30 4-34 188-218 (365)
336 PLN02827 Alcohol dehydrogenase 72.0 12 0.00026 32.6 6.2 29 4-33 195-224 (378)
337 PRK09126 hypothetical protein; 72.0 6.2 0.00013 34.1 4.4 33 1-34 1-33 (392)
338 COG1250 FadB 3-hydroxyacyl-CoA 71.9 5.6 0.00012 34.4 4.0 34 1-36 1-34 (307)
339 PRK09496 trkA potassium transp 71.8 6.6 0.00014 34.8 4.6 31 4-35 232-262 (453)
340 PRK05678 succinyl-CoA syntheta 71.8 20 0.00043 30.7 7.3 87 3-123 8-95 (291)
341 TIGR00518 alaDH alanine dehydr 71.8 6.8 0.00015 34.5 4.6 31 4-35 168-198 (370)
342 cd01337 MDH_glyoxysomal_mitoch 71.1 7.7 0.00017 33.4 4.7 23 4-26 1-24 (310)
343 PRK12825 fabG 3-ketoacyl-(acyl 71.1 8.7 0.00019 30.3 4.8 33 2-35 5-38 (249)
344 PRK05732 2-octaprenyl-6-methox 71.0 6.9 0.00015 33.7 4.5 35 1-35 1-37 (395)
345 cd08233 butanediol_DH_like (2R 70.7 48 0.001 28.1 9.6 30 4-34 174-204 (351)
346 PLN02350 phosphogluconate dehy 70.7 4.9 0.00011 36.9 3.6 32 3-35 6-37 (493)
347 PRK15076 alpha-galactosidase; 70.6 5.6 0.00012 35.8 3.9 13 4-16 2-14 (431)
348 PRK03803 murD UDP-N-acetylmura 70.5 30 0.00064 30.9 8.5 31 4-36 7-37 (448)
349 TIGR00873 gnd 6-phosphoglucona 70.2 5.6 0.00012 36.2 3.8 30 5-35 1-30 (467)
350 PRK15182 Vi polysaccharide bio 70.1 6.5 0.00014 35.3 4.2 31 3-35 6-36 (425)
351 PRK14620 NAD(P)H-dependent gly 69.9 8.3 0.00018 32.9 4.7 28 5-33 2-29 (326)
352 cd08295 double_bond_reductase_ 69.9 18 0.0004 30.5 6.8 31 4-35 153-184 (338)
353 TIGR02819 fdhA_non_GSH formald 69.8 19 0.00041 31.7 7.1 32 4-36 187-218 (393)
354 COG0702 Predicted nucleoside-d 69.8 7.5 0.00016 31.4 4.2 30 5-35 2-32 (275)
355 PLN02172 flavin-containing mon 69.6 9.3 0.0002 34.6 5.1 31 3-34 10-40 (461)
356 PRK08328 hypothetical protein; 69.6 8.8 0.00019 31.4 4.6 32 3-35 27-58 (231)
357 PF00070 Pyr_redox: Pyridine n 69.5 12 0.00027 24.8 4.6 29 5-34 1-29 (80)
358 cd08235 iditol_2_DH_like L-idi 69.2 16 0.00034 30.7 6.2 30 4-34 167-197 (343)
359 cd08289 MDR_yhfp_like Yhfp put 69.2 25 0.00054 29.1 7.4 31 5-36 149-180 (326)
360 PF01073 3Beta_HSD: 3-beta hyd 69.2 26 0.00057 29.4 7.5 24 8-31 2-27 (280)
361 cd00401 AdoHcyase S-adenosyl-L 68.9 8.7 0.00019 34.6 4.7 31 4-36 203-233 (413)
362 TIGR01763 MalateDH_bact malate 68.8 9.4 0.0002 32.7 4.7 30 4-33 2-31 (305)
363 PLN00106 malate dehydrogenase 68.7 9.2 0.0002 33.2 4.7 25 3-27 18-43 (323)
364 PLN00198 anthocyanidin reducta 68.7 9.6 0.00021 32.3 4.8 32 2-34 8-40 (338)
365 PRK06719 precorrin-2 dehydroge 68.5 12 0.00025 28.9 4.8 30 4-34 14-43 (157)
366 PLN02166 dTDP-glucose 4,6-dehy 68.4 9.3 0.0002 34.3 4.8 32 3-35 120-152 (436)
367 PRK00421 murC UDP-N-acetylmura 68.4 37 0.00079 30.5 8.7 31 4-36 8-39 (461)
368 PLN02657 3,8-divinyl protochlo 68.4 9.9 0.00021 33.5 4.9 32 3-35 60-92 (390)
369 cd08300 alcohol_DH_class_III c 68.3 61 0.0013 27.8 9.8 31 4-35 188-219 (368)
370 PLN02778 3,5-epimerase/4-reduc 68.1 14 0.0003 31.1 5.6 29 3-32 9-38 (298)
371 PRK07411 hypothetical protein; 68.1 3.3 7.2E-05 36.8 1.9 32 3-35 38-69 (390)
372 PRK07878 molybdopterin biosynt 68.1 2.2 4.7E-05 37.9 0.7 32 3-35 42-73 (392)
373 PRK12826 3-ketoacyl-(acyl-carr 67.7 11 0.00023 30.0 4.6 32 3-35 6-38 (251)
374 cd08234 threonine_DH_like L-th 67.4 72 0.0016 26.5 10.0 30 4-34 161-191 (334)
375 cd08254 hydroxyacyl_CoA_DH 6-h 67.3 16 0.00036 30.3 5.9 96 4-123 167-262 (338)
376 TIGR02279 PaaC-3OHAcCoADH 3-hy 67.3 9 0.00019 35.3 4.6 31 4-35 6-36 (503)
377 TIGR01408 Ube1 ubiquitin-activ 67.2 4.5 9.8E-05 40.4 2.7 23 3-25 419-441 (1008)
378 PRK08017 oxidoreductase; Provi 67.1 12 0.00026 29.9 4.9 31 4-35 3-34 (256)
379 COG1087 GalE UDP-glucose 4-epi 67.1 18 0.00039 31.5 6.0 32 5-37 2-34 (329)
380 PRK06019 phosphoribosylaminoim 67.1 11 0.00023 33.0 4.8 31 4-35 3-33 (372)
381 PRK11259 solA N-methyltryptoph 67.0 10 0.00023 32.4 4.7 34 1-35 1-34 (376)
382 PRK02472 murD UDP-N-acetylmura 66.8 34 0.00074 30.3 8.1 31 4-36 6-36 (447)
383 PRK08618 ornithine cyclodeamin 66.8 13 0.00028 31.9 5.3 33 4-36 128-160 (325)
384 PRK08163 salicylate hydroxylas 66.8 9.8 0.00021 32.9 4.5 31 2-33 3-33 (396)
385 cd08260 Zn_ADH6 Alcohol dehydr 66.6 19 0.00041 30.4 6.2 31 4-35 167-197 (345)
386 cd08293 PTGR2 Prostaglandin re 66.4 22 0.00048 29.9 6.6 31 4-35 156-188 (345)
387 PRK09291 short chain dehydroge 66.2 13 0.00028 29.8 4.9 33 1-35 1-34 (257)
388 cd05188 MDR Medium chain reduc 66.1 36 0.00078 26.9 7.5 31 4-35 136-166 (271)
389 PRK00045 hemA glutamyl-tRNA re 65.9 10 0.00023 33.8 4.6 31 4-35 183-214 (423)
390 cd08269 Zn_ADH9 Alcohol dehydr 65.8 26 0.00057 28.7 6.8 31 4-35 131-162 (312)
391 TIGR02825 B4_12hDH leukotriene 65.8 20 0.00044 30.0 6.2 31 4-35 140-171 (325)
392 PRK08013 oxidoreductase; Provi 65.4 11 0.00023 33.1 4.5 33 1-34 1-33 (400)
393 PRK12827 short chain dehydroge 65.0 13 0.00028 29.5 4.6 31 3-34 6-37 (249)
394 PLN00112 malate dehydrogenase 64.9 15 0.00033 33.4 5.4 23 3-25 100-123 (444)
395 PF00670 AdoHcyase_NAD: S-aden 64.8 15 0.00032 28.8 4.7 31 4-36 24-54 (162)
396 PRK10675 UDP-galactose-4-epime 64.6 12 0.00026 31.5 4.6 30 5-35 2-32 (338)
397 PRK08849 2-octaprenyl-3-methyl 64.3 11 0.00025 32.6 4.5 33 1-34 1-33 (384)
398 COG1893 ApbA Ketopantoate redu 64.0 11 0.00023 32.4 4.1 31 4-35 1-31 (307)
399 cd05284 arabinose_DH_like D-ar 63.8 28 0.00061 29.1 6.7 32 4-35 169-200 (340)
400 PRK06914 short chain dehydroge 63.8 17 0.00037 29.7 5.2 34 1-35 1-35 (280)
401 PRK12829 short chain dehydroge 63.4 14 0.0003 29.6 4.6 32 3-35 11-43 (264)
402 TIGR00507 aroE shikimate 5-deh 63.3 49 0.0011 27.5 7.9 31 4-35 118-148 (270)
403 cd08231 MDR_TM0436_like Hypoth 63.3 76 0.0017 26.9 9.4 31 4-35 179-210 (361)
404 PRK14806 bifunctional cyclohex 63.0 12 0.00027 35.6 4.8 31 4-34 4-35 (735)
405 TIGR00514 accC acetyl-CoA carb 62.9 13 0.00029 33.3 4.7 32 1-34 1-32 (449)
406 PRK05086 malate dehydrogenase; 62.6 14 0.00031 31.7 4.7 21 4-24 1-22 (312)
407 TIGR03466 HpnA hopanoid-associ 62.6 12 0.00026 31.0 4.2 30 5-35 2-32 (328)
408 PRK05586 biotin carboxylase; V 62.6 12 0.00026 33.5 4.4 31 3-34 2-32 (447)
409 PRK08125 bifunctional UDP-gluc 62.5 13 0.00028 35.1 4.8 32 4-35 316-348 (660)
410 PRK07577 short chain dehydroge 62.5 17 0.00036 28.7 4.8 34 1-35 1-35 (234)
411 PLN00203 glutamyl-tRNA reducta 62.5 11 0.00024 34.9 4.2 33 3-35 266-298 (519)
412 PRK06180 short chain dehydroge 62.4 16 0.00036 29.9 4.9 32 3-35 4-36 (277)
413 cd08236 sugar_DH NAD(P)-depend 62.4 33 0.00071 28.8 6.9 30 5-35 162-192 (343)
414 cd08262 Zn_ADH8 Alcohol dehydr 62.3 23 0.00049 29.8 5.9 31 4-35 163-193 (341)
415 TIGR03570 NeuD_NnaD sugar O-ac 62.2 16 0.00034 28.2 4.5 31 5-36 1-31 (201)
416 PLN02702 L-idonate 5-dehydroge 62.2 27 0.00059 29.9 6.4 31 4-35 183-213 (364)
417 KOG0029 Amine oxidase [Seconda 62.2 15 0.00031 33.9 4.9 32 2-34 14-45 (501)
418 PLN02206 UDP-glucuronate decar 62.1 14 0.0003 33.3 4.7 31 4-35 120-151 (442)
419 PLN02695 GDP-D-mannose-3',5'-e 62.1 14 0.00031 32.1 4.7 32 3-35 21-53 (370)
420 cd08285 NADP_ADH NADP(H)-depen 62.1 27 0.00059 29.6 6.4 30 4-34 168-198 (351)
421 PTZ00357 methyltransferase; Pr 62.0 30 0.00065 33.7 6.9 101 4-120 702-819 (1072)
422 PRK06182 short chain dehydroge 62.0 17 0.00037 29.7 4.9 34 1-35 1-35 (273)
423 PRK08850 2-octaprenyl-6-methox 61.8 13 0.00028 32.5 4.4 33 1-34 1-34 (405)
424 TIGR01214 rmlD dTDP-4-dehydror 61.8 12 0.00027 30.6 4.1 30 5-35 1-31 (287)
425 PRK12409 D-amino acid dehydrog 61.1 14 0.00031 32.2 4.5 30 4-34 2-31 (410)
426 cd08246 crotonyl_coA_red croto 60.9 1.1E+02 0.0024 26.4 10.5 31 4-35 195-226 (393)
427 cd01080 NAD_bind_m-THF_DH_Cycl 60.5 26 0.00057 27.4 5.5 31 4-35 45-76 (168)
428 PRK14989 nitrite reductase sub 60.4 15 0.00032 36.1 4.9 36 1-36 1-39 (847)
429 cd05279 Zn_ADH1 Liver alcohol 60.4 25 0.00055 30.2 5.9 29 4-33 185-214 (365)
430 PRK08263 short chain dehydroge 60.4 19 0.00042 29.4 5.0 34 1-35 1-35 (275)
431 PLN02572 UDP-sulfoquinovose sy 60.3 15 0.00032 33.0 4.5 30 4-34 48-78 (442)
432 TIGR01772 MDH_euk_gproteo mala 60.3 15 0.00032 31.7 4.4 22 5-26 1-23 (312)
433 PRK05335 tRNA (uracil-5-)-meth 59.6 15 0.00032 33.4 4.4 30 4-34 3-32 (436)
434 cd08263 Zn_ADH10 Alcohol dehyd 59.4 1E+02 0.0022 26.4 9.5 30 5-35 190-220 (367)
435 PLN02214 cinnamoyl-CoA reducta 59.4 17 0.00037 31.1 4.7 31 4-35 11-42 (342)
436 PRK09987 dTDP-4-dehydrorhamnos 59.2 15 0.00032 30.8 4.2 28 5-34 2-30 (299)
437 PRK00258 aroE shikimate 5-dehy 59.1 18 0.00039 30.3 4.6 32 4-35 124-155 (278)
438 PRK06847 hypothetical protein; 59.0 16 0.00035 31.2 4.5 31 3-34 4-34 (375)
439 PRK05565 fabG 3-ketoacyl-(acyl 58.9 20 0.00043 28.3 4.7 31 2-33 4-35 (247)
440 PF01370 Epimerase: NAD depend 58.9 21 0.00046 27.9 4.9 30 6-36 1-31 (236)
441 cd08252 AL_MDR Arginate lyase 58.8 48 0.0011 27.5 7.3 32 4-35 151-183 (336)
442 PRK07023 short chain dehydroge 58.8 18 0.00038 28.9 4.4 30 4-34 2-32 (243)
443 COG0644 FixC Dehydrogenases (f 58.8 16 0.00035 32.0 4.5 34 1-35 1-34 (396)
444 cd08232 idonate-5-DH L-idonate 58.7 90 0.0019 26.1 8.9 30 4-34 167-197 (339)
445 PRK14851 hypothetical protein; 58.6 7.9 0.00017 37.1 2.6 24 3-26 43-66 (679)
446 COG0665 DadA Glycine/D-amino a 58.5 20 0.00044 30.6 5.0 32 2-34 3-34 (387)
447 COG1091 RfbD dTDP-4-dehydrorha 58.4 14 0.00031 31.5 3.9 42 5-48 2-47 (281)
448 TIGR01181 dTDP_gluc_dehyt dTDP 58.3 14 0.00031 30.3 3.9 31 5-35 1-33 (317)
449 cd08258 Zn_ADH4 Alcohol dehydr 58.3 62 0.0013 27.0 7.8 138 5-168 167-305 (306)
450 PLN02896 cinnamyl-alcohol dehy 58.3 19 0.00042 30.7 4.8 31 4-35 11-42 (353)
451 PF00107 ADH_zinc_N: Zinc-bind 58.2 4 8.7E-05 29.4 0.5 126 13-165 1-127 (130)
452 PLN02260 probable rhamnose bio 57.8 19 0.00041 33.9 5.0 32 3-35 380-413 (668)
453 COG0677 WecC UDP-N-acetyl-D-ma 57.8 11 0.00024 33.9 3.2 29 4-33 10-38 (436)
454 PLN02948 phosphoribosylaminoim 57.4 19 0.00041 33.8 4.8 32 2-34 21-52 (577)
455 PRK06947 glucose-1-dehydrogena 57.3 20 0.00043 28.6 4.5 31 1-33 1-32 (248)
456 PRK07494 2-octaprenyl-6-methox 57.3 18 0.00039 31.2 4.5 30 4-34 8-37 (388)
457 TIGR02371 ala_DH_arch alanine 57.0 20 0.00044 30.9 4.7 33 4-36 129-161 (325)
458 PRK12439 NAD(P)H-dependent gly 57.0 18 0.00039 31.3 4.4 24 3-26 7-30 (341)
459 PRK08267 short chain dehydroge 56.8 22 0.00048 28.6 4.7 31 4-35 2-33 (260)
460 PRK06184 hypothetical protein; 56.8 18 0.00038 32.8 4.5 33 1-34 1-33 (502)
461 cd08240 6_hydroxyhexanoate_dh_ 56.6 29 0.00064 29.3 5.6 29 4-33 177-206 (350)
462 PRK07231 fabG 3-ketoacyl-(acyl 56.6 23 0.00051 28.0 4.8 31 4-35 6-37 (251)
463 TIGR03589 PseB UDP-N-acetylglu 56.3 21 0.00046 30.3 4.7 33 2-34 3-37 (324)
464 KOG2250 Glutamate/leucine/phen 56.3 68 0.0015 29.6 7.9 103 4-123 252-363 (514)
465 cd05280 MDR_yhdh_yhfp Yhdh and 56.1 49 0.0011 27.3 6.8 30 5-35 149-179 (325)
466 PRK07806 short chain dehydroge 55.9 25 0.00054 28.0 4.8 31 4-35 7-38 (248)
467 PRK01710 murD UDP-N-acetylmura 55.9 18 0.00039 32.5 4.4 31 4-36 15-45 (458)
468 PRK08773 2-octaprenyl-3-methyl 55.8 20 0.00044 31.0 4.6 31 3-34 6-36 (392)
469 PRK10217 dTDP-glucose 4,6-dehy 55.7 19 0.0004 30.7 4.2 31 4-35 2-33 (355)
470 PRK10538 malonic semialdehyde 55.6 23 0.00051 28.3 4.7 30 5-35 2-32 (248)
471 cd05288 PGDH Prostaglandin deh 55.6 46 0.00099 27.6 6.6 31 4-35 147-178 (329)
472 PLN02858 fructose-bisphosphate 55.6 17 0.00037 37.6 4.6 31 4-35 325-355 (1378)
473 PRK09186 flagellin modificatio 55.5 25 0.00055 28.0 4.8 32 3-35 4-36 (256)
474 PF13241 NAD_binding_7: Putati 55.4 28 0.00061 24.5 4.5 32 3-35 7-38 (103)
475 PRK08703 short chain dehydroge 55.2 25 0.00054 27.9 4.7 31 4-35 7-38 (239)
476 PRK07102 short chain dehydroge 55.1 25 0.00054 28.0 4.7 31 4-35 2-33 (243)
477 PRK14982 acyl-ACP reductase; P 54.6 22 0.00049 31.1 4.6 33 3-35 155-189 (340)
478 PRK06500 short chain dehydroge 54.6 25 0.00055 27.8 4.7 30 4-34 7-37 (249)
479 PRK08063 enoyl-(acyl carrier p 54.4 26 0.00056 27.9 4.7 30 3-33 4-34 (250)
480 PRK05396 tdh L-threonine 3-deh 54.4 56 0.0012 27.5 7.0 29 4-33 165-194 (341)
481 COG0362 Gnd 6-phosphogluconate 54.4 16 0.00036 32.9 3.7 35 1-36 1-35 (473)
482 PLN02260 probable rhamnose bio 54.2 22 0.00047 33.5 4.7 33 3-35 6-40 (668)
483 PRK10754 quinone oxidoreductas 54.1 34 0.00073 28.5 5.5 31 4-35 142-173 (327)
484 PRK00676 hemA glutamyl-tRNA re 54.1 22 0.00048 31.2 4.4 32 4-35 175-206 (338)
485 PRK08243 4-hydroxybenzoate 3-m 54.0 21 0.00046 31.1 4.4 31 3-34 2-32 (392)
486 TIGR01751 crot-CoA-red crotony 53.8 1.2E+02 0.0025 26.4 9.1 30 4-34 191-221 (398)
487 PRK07688 thiamine/molybdopteri 53.8 28 0.00061 30.3 5.1 32 3-35 24-56 (339)
488 PF00106 adh_short: short chai 53.7 34 0.00074 25.3 5.0 31 5-35 2-33 (167)
489 PLN02686 cinnamoyl-CoA reducta 53.7 26 0.00056 30.5 4.8 33 2-35 52-85 (367)
490 TIGR03219 salicylate_mono sali 53.6 21 0.00046 31.2 4.4 30 4-33 1-30 (414)
491 PRK05714 2-octaprenyl-3-methyl 53.5 22 0.00048 31.0 4.4 31 3-34 2-32 (405)
492 PLN02986 cinnamyl-alcohol dehy 53.4 39 0.00084 28.3 5.8 32 4-36 6-38 (322)
493 PF01494 FAD_binding_3: FAD bi 53.4 23 0.00049 29.4 4.4 30 4-34 2-31 (356)
494 COG0654 UbiH 2-polyprenyl-6-me 53.3 21 0.00046 31.1 4.3 32 3-35 2-33 (387)
495 PRK09135 pteridine reductase; 53.2 28 0.00061 27.4 4.7 31 4-35 7-38 (249)
496 PRK11728 hydroxyglutarate oxid 53.2 23 0.0005 30.8 4.5 34 1-35 1-35 (393)
497 COG2084 MmsB 3-hydroxyisobutyr 53.1 23 0.00049 30.4 4.3 31 4-35 1-31 (286)
498 PRK06617 2-octaprenyl-6-methox 53.1 23 0.00049 30.7 4.4 30 4-34 2-31 (374)
499 PRK12464 1-deoxy-D-xylulose 5- 53.0 14 0.0003 33.0 3.0 39 8-47 1-41 (383)
500 cd08238 sorbose_phosphate_red 53.0 97 0.0021 27.2 8.5 34 92-125 256-289 (410)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-70 Score=467.78 Aligned_cols=187 Identities=50% Similarity=0.883 Sum_probs=175.2
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcC----CCceEEEEeCCCCChhhhhhhheeccccccccccceEEe-------CCCce
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTL 69 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~----~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~-------~~~~l 69 (188)
||++||||||||||||.++|+++++ +++|+|+|||+..++++++|||+|||+||+|+ ++++.+ +++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCCEE
Confidence 7779999999999999999998874 57999999998789999999999999999999 888862 34569
Q ss_pred EECCEEEEEE-eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCC-CC
Q 029788 70 LFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-EL 146 (188)
Q Consensus 70 ~i~g~~i~v~-~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~-~~ 146 (188)
.+||++|.++ +++||+++||+++|+|||+||||.|++++.++.|+++||||||||+|++| .|+||+|||++.|++ .+
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 99999999999999999999999999999999999999999999999887 679999999999997 57
Q ss_pred cEEEcCChhhHhHHHHHHHH-HHhcCceEEEEEEEeeccCCCC
Q 029788 147 NIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 147 ~ivs~~sCtT~~la~~lk~l-~~~~gI~~~~vtTvha~s~~~~ 188 (188)
+||||+|||||||||++|+| ||+|||++++|||+||||++|.
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~ 202 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQK 202 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcc
Confidence 89999999999999999999 7999999999999999999993
No 2
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-66 Score=442.79 Aligned_cols=184 Identities=64% Similarity=1.033 Sum_probs=175.1
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+ +||||||||||||.++|++++++++++|+|||+..++++++|||+|||+||+|+ ++++.++ +.|.+||++|++++
T Consensus 1 m~-~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~-~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MV-VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTD-GFLMIGSKKVHVFF 77 (337)
T ss_pred Cc-eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecC-CEEEECCeEEEEEe
Confidence 54 899999999999999999988888999999998789999999999999999999 8898754 46999999999999
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEEEcCChhhHhH
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~l 159 (188)
++||+++||++.|+|+||||||.|+++++++.|+++||++|++|+|.++ +|++|||||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 9999999999999999999999999999999999999999999999765 799999999999987678999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 160 APLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 160 a~~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
+|++|+||++|||+++.||||||+|++|
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q 185 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQ 185 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCc
Confidence 9999999999999999999999999999
No 3
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=7.1e-65 Score=435.31 Aligned_cols=181 Identities=54% Similarity=0.930 Sum_probs=172.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++||||||||||||.++|++++++++|+|+|||+ .++++++|||+|||+||+|+ ++++.++ +.|.++|++|.+++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~-~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKD-GHLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecC-CEEEECCeEEEEEEcC
Confidence 3799999999999999999988888999999996 69999999999999999999 8888754 4699999999999999
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEEEcCChhhHhHHH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~ 161 (188)
+|+++||+++|+|+||||||.|+++++++.|+++|||+|++|+|+++ +|+||||||++.|++ ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 799999999999975 7899999999999999
Q ss_pred HHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 162 LAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 162 ~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
++|+||++|||+++.||||||+|++|
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q 183 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQ 183 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCcc
Confidence 99999999999999999999999998
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=2.5e-64 Score=442.30 Aligned_cols=184 Identities=51% Similarity=0.841 Sum_probs=172.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcC--CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~--~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
++||||||||||||.++|+++++ +++|||+|||+ .++++++|||+|||+||+|+ ++++..+++.|.++|++|++++
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEEE
Confidence 48999999999999999998765 67999999996 69999999999999999999 8887534567999999999999
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCcCCC-CcEEEcCChhhH
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPE-LNIVSNASCTTN 157 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d--~p~~V~gvN~~~~~~~-~~ivs~~sCtT~ 157 (188)
+++|.++||++.|+|+||||||.|.++++++.|+++|||+|++|+|.+| +|+||||||++.|++. ++||||||||||
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTN 232 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTN 232 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHH
Confidence 8999999999999999999999999999999999999999999999765 7999999999999875 789999999999
Q ss_pred hHHHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 158 CLAPLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 158 ~la~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
||+|++|+||++|||+++.||||||||+||.
T Consensus 233 cLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~ 263 (442)
T PLN02237 233 CLAPFVKVLDEEFGIVKGTMTTTHSYTGDQR 263 (442)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCCcc
Confidence 9999999999999999999999999999993
No 5
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-64 Score=431.63 Aligned_cols=181 Identities=28% Similarity=0.548 Sum_probs=170.7
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECC-EEEEEEee
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g-~~i~v~~~ 81 (188)
++||||||||||||.++|++++++++|+|+|||+..++++++|||+|||+||+|++.+++.+ ++.|.+|| ++|.++++
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~-~~~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVV-GEQIVLNGTQKIRVSAK 80 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEc-CCEEecCCCeEEEEEec
Confidence 37999999999999999999888889999999977899999999999999999951478874 45699998 89999999
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcCChhhHhHHH
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~ 161 (188)
++|+++||+++|+|+||||||.|++++.+..|+++|||||+||+|++|+||||||||++.|++.++||||||||||||+|
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 160 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP 160 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998767899999999999999
Q ss_pred HHHHHHHhcCceEEEEEEEeecc
Q 029788 162 LAKVIHDKFGIVEGLMTTVHSIT 184 (188)
Q Consensus 162 ~lk~l~~~~gI~~~~vtTvha~s 184 (188)
++|+||++|||++++|||||||+
T Consensus 161 vlkvL~~~fGI~~g~mTTvHs~q 183 (342)
T PTZ00353 161 VIRALHEVYGVEECSYTAIHGMQ 183 (342)
T ss_pred HHHHHHHhcCeeEEEeeeeeecc
Confidence 99999999999999999999996
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5.2e-64 Score=430.58 Aligned_cols=181 Identities=48% Similarity=0.830 Sum_probs=171.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcC--CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~--~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||||||||||||.++|+++++ +++++|+|||+ .++++++|||+|||+||+|+ ++++.+ ++.|.++|++|+++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~-~~~l~v~g~~I~v~~~ 78 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISAD-ENSITVNGKTIKCVSD 78 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEc-CCEEEECCEEEEEEEc
Confidence 6999999999999999998876 57999999996 59999999999999999999 888874 5679999999999999
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCcCC-CCcEEEcCChhhHh
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKP-ELNIVSNASCTTNC 158 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d--~p~~V~gvN~~~~~~-~~~ivs~~sCtT~~ 158 (188)
+||+++||+++|+|+||||||.|+++++++.|+++|||+|++|+|++| +|++|||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999754 699999999999985 47899999999999
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 159 la~~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
|+|++|+||++|||+++.||||||||++|
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q 187 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQ 187 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCc
Confidence 99999999999999999999999999999
No 7
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=9.1e-64 Score=437.86 Aligned_cols=184 Identities=69% Similarity=1.116 Sum_probs=175.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||||||||||.++|.+.+++++++++|||+..++++++|||+|||+||+|+ ++++..+++.|.++|++|.++++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecCC
Confidence 699999999999999999987778999999998899999999999999999999 8888634556999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcCChhhHhHHHHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLA 163 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~~l 163 (188)
|++++|++.|+|+||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|++
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~l 244 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999999999876789999999999999999
Q ss_pred HHHHHhcCceEEEEEEEeeccCCCC
Q 029788 164 KVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 164 k~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
|+||++|||+++.|||||++|++|.
T Consensus 245 k~L~~~fGI~~g~mTTvha~T~tQ~ 269 (421)
T PLN02272 245 KVVHEEFGILEGLMTTVHATTATQK 269 (421)
T ss_pred HHHHHhCCeEEEEEEEEEeccCccc
Confidence 9999999999999999999999984
No 8
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.5e-64 Score=429.51 Aligned_cols=182 Identities=45% Similarity=0.801 Sum_probs=171.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++||||||||||||.++|++++++++++|+|||+ .++++++|||+|||+||+|+ ++++.+ ++.|.++|++|++++++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~-~~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAF-EDHLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEec-CCEEEECCEEEEEEEcC
Confidence 4899999999999999999988888999999996 59999999999999999999 888874 55799999999999999
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCC-CCcEEEcCChhhHhHH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLA 160 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~-~~~ivs~~sCtT~~la 160 (188)
+|+++||++.|+|+||||||.|+++++++.|+++||++|++|+|++| ++++|+|||++.|++ .++||||||||||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999766 456799999999987 4789999999999999
Q ss_pred HHHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 161 PLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 161 ~~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
|++|+||++|||+++.||||||+|++|
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q 185 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQ 185 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcc
Confidence 999999999999999999999999998
No 9
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-63 Score=420.97 Aligned_cols=182 Identities=55% Similarity=0.917 Sum_probs=174.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||||||||||+++|++.+++ ++|+|+|||+ .+++++||||+|||+||+|. ++++. +++.+.|+|+.|+++.++
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-Ccccc-cCCeEEECCceEEEEecC
Confidence 79999999999999999999998 7999999997 69999999999999999999 88875 445699999999999999
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhC-CCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEEEcCChhhHhHH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~a-Gak~vvis~ps~d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la 160 (188)
+|+++||+++|+|+|+||||.|+++|.++.|+++ |||||++|+|+++ +++||+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999988 5999999999987 9999999999999988899999999999999
Q ss_pred HHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 161 PLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 161 ~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
|++|+|+++|||++++|||+|++|++|+
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~ 186 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQK 186 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCc
Confidence 9999999999999999999999999995
No 10
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=5e-63 Score=425.72 Aligned_cols=185 Identities=89% Similarity=1.393 Sum_probs=177.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheecccccccccc-ceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~-~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||||||||||||..+|.+.+++++++++|||+..++++++|||+|||+||+|+ + +++.++|+.|.++|++|.++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 4899999999999999999988889999999998889999999999999999998 6 7887667779999999999999
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcCChhhHhHHH
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~ 161 (188)
+||+++||++.|+|+||||||.|+++++++.|+++|||||++|+|++|+|+||||||++.|++.++||||||||||||+|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777899999999999999
Q ss_pred HHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 162 LAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 162 ~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
++|+||++|||+++.||||||+|++|.
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~ 190 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQK 190 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCccc
Confidence 999999999999999999999999993
No 11
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=6.8e-63 Score=430.22 Aligned_cols=184 Identities=47% Similarity=0.786 Sum_probs=173.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcC--CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~--~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
++||||||||||||.++|+|+++ +.+++++|||+ .++++++|||+|||+||+|+ ++++..+|+.|.++|++|.+++
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEE
Confidence 47999999999999999999877 67999999996 59999999999999999999 8887656678999999999999
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEEEcCChhhHhH
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~l 159 (188)
++||+++||++.|+|+||||||.|.++++++.|+++|||||++|+|.++ +|+||||||++.|++.++||||||||||||
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L 217 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL 217 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence 9999999999999999999999999999999999999999999999765 799999999999987678999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 160 APLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 160 a~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
+|++|+||++|||+++.||||||||++|.
T Consensus 218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~ 246 (395)
T PLN03096 218 APFVKVLDQKFGIIKGTMTTTHSYTGDQR 246 (395)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEccccccc
Confidence 99999999999999999999999999993
No 12
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=8.7e-63 Score=422.62 Aligned_cols=181 Identities=57% Similarity=0.951 Sum_probs=171.3
Q ss_pred eEEEEccCHHHHHHHHHHHcC--CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCE-EEEEEee
Q 029788 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~--~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~-~i~v~~~ 81 (188)
||||||||||||.++|+++++ +++++|+|||+ .++++++|||+|||+||+|+ ++++.++++.|.++|+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999998877 47999999997 79999999999999999999 8898754315999999 9999999
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEEEcCChhhHhHH
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la 160 (188)
++|++++|+++|+|+||||||.|+++++++.|+++|||+|++|+|++| +||+|||||++.|+.+++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 161 PLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 161 ~~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
|++|+||++|||+++.||||||+|++|
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q 185 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQ 185 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCcc
Confidence 999999999999999999999999998
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-61 Score=414.69 Aligned_cols=182 Identities=37% Similarity=0.735 Sum_probs=171.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcC---CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~---~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+||||||||||||.++|+|+++ +++++++|||+ .++++++|||+|||+||+|+ ++++. +|+.|.++|++|.+++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~-~~~~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQ-ERDQLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEe-cCCEEEECCEEEEEEE
Confidence 6999999999999999999875 47999999996 59999999999999999999 88886 4667999999999999
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC-C-CCeEEeecCccCcCCCCcEEEcCChhhHh
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNEHEYKPELNIVSNASCTTNC 158 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~-d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~ 158 (188)
+++|+++||++.|+|+||||||.|.++++++.|+++|||+|++|+|++ | .++||||||++.|++.++|||||||||||
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999975 5 45899999999998767899999999999
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 159 la~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
|+|++|+||++|||+++.||||||||++|.
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~ 188 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQ 188 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcc
Confidence 999999999999999999999999999983
No 14
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-60 Score=410.16 Aligned_cols=182 Identities=40% Similarity=0.745 Sum_probs=172.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++||||||||||||.++|.+.++++++++++||+..++++++|||+|||+||+|+ ++++. +|+.|.++|++|++++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~-~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTA-EGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEE-cCCEEEECCEEEEEEecC
Confidence 4899999999999999999998889999999998889999999999999999999 78876 566799999999999999
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCcCC-CCcEEEcCChhhHhH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKP-ELNIVSNASCTTNCL 159 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d--~p~~V~gvN~~~~~~-~~~ivs~~sCtT~~l 159 (188)
+|++++|+ |+|+||||||.|.++++++.|+++|||+|++|+|++| +|++|||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999997 8999999999999999999999999999999999754 699999999999987 378999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 160 APLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 160 a~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
+|++||||++|||+++.||||||+|++|.
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~ 186 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQT 186 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccc
Confidence 99999999999999999999999999984
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-60 Score=419.63 Aligned_cols=183 Identities=35% Similarity=0.601 Sum_probs=171.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcC----CCceEEEEe----CCCCChhhhhhhheeccccccccccceEEeC-CCceEECC
Q 029788 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVN----DPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGE 73 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~----~~~~vv~In----d~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~-~~~l~i~g 73 (188)
+.||||||||||||+++|++.++ ++++++||| |. .++++++|||+|||+||+|+ ++++.++ ++.|.+||
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing 204 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANG 204 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECC
Confidence 46999999999999999999876 579999996 44 58999999999999999999 8888752 56799999
Q ss_pred EEEEEEeecCCCCCCCcCCCcc--EEEeecCCccCHhhHHHHHh-CCCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEE
Q 029788 74 KPVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIV 149 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vd--iV~e~tg~~~~~~~~~~~l~-aGak~vvis~ps~d-~p~~V~gvN~~~~~~~~~iv 149 (188)
+.|+++++++|+++||+++|+| +|+||||.|.+++.++.|++ +||||||||+|++| +|+||||||++.|++.++||
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~II 284 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIV 284 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEE
Confidence 9999999999999999999999 99999999999999999999 89999999999986 79999999999998777899
Q ss_pred EcCChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 150 s~~sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
||||||||||+|++|+||++|||++++|||+||||++|
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ 322 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQ 322 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCCh
Confidence 99999999999999999999999999999999999998
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=5.8e-58 Score=393.13 Aligned_cols=181 Identities=39% Similarity=0.726 Sum_probs=169.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCC---CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~---~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
||||||||||||.++|++++++ +|++++|||+ .++++++|||+|||+||+|+ ++++. +|+.|.++|+.|.++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~-~~~~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKV-DGDCLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEE-eCCEEEECCeEEEEEEc
Confidence 6999999999999999999764 6999999996 58999999999999999999 88886 45679999999999999
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC-C-CCeEEeecCccCcCCCCcEEEcCChhhHhH
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNEHEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~-d-~p~~V~gvN~~~~~~~~~ivs~~sCtT~~l 159 (188)
++|+++||++.++|+||||||.|.++++++.|+++||++|++|+|++ | .+++|||||++.|++.++||||||||||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999975 3 358999999999987678999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 160 APLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 160 a~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
+|++|+||++|||+++.||||||+|++|.
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~ 186 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQ 186 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcc
Confidence 99999999999999999999999999883
No 17
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=7.7e-53 Score=325.91 Aligned_cols=149 Identities=56% Similarity=0.984 Sum_probs=138.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||||||||||+++|+++.+++|++++|||+..++++++|||+|||+||+|+ ++++.++ +.|.++|++|+++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~-~~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDD-DGLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEET-TEEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-ccccccc-ceeEeecccccchhhhh
Confidence 599999999999999999999999999999999889999999999999999998 7888754 46999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCcCCCCcEEEcCCh
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASC 154 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d--~p~~V~gvN~~~~~~~~~ivs~~sC 154 (188)
|+++||++.++|+|+||||.|.+++.++.|+++|||||++|+|++| +||||+|||++.|+++++|||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999987 8999999999999987799999999
No 18
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=2.3e-47 Score=295.06 Aligned_cols=148 Identities=55% Similarity=0.942 Sum_probs=139.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||+|||||||.++|.+.+++++++++++|+ .++++++|||+|||+||+|+ .+++.+++ .|.++|+.|.++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 489999999999999999998889999999997 69999999999999999999 78887544 5999999999999999
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCcCCCCcEEEcCCh
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASC 154 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d-~p~~V~gvN~~~~~~~~~ivs~~sC 154 (188)
|.++||++.|+|+|+||||.|.+++.++.|+++|||||++|+|++| .++||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999987 4699999999999987779999999
No 19
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=322.03 Aligned_cols=169 Identities=60% Similarity=1.037 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCCCCCCCcCCC
Q 029788 14 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 93 (188)
Q Consensus 14 IGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~~~~w~~~~ 93 (188)
|||.++ + +++++++++||++++.++++||++|||+||+|+ +.++.+++ .+.++|++|.++++++|..++|.+.+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 466666 2 556999999999999999999999999999999 88888655 47788999999999999999999999
Q ss_pred ccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcCChhhHhHHHHHHHHHHhcCce
Q 029788 94 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (188)
Q Consensus 94 vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI~ 173 (188)
+|+|+|+||.|.+.+.+..|+++||||++||+|++|.||||+|||+++|+++..||||+|||||||||+.|+||++|||.
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999877799999999999999999999999999
Q ss_pred EEEEEEEeeccCCCC
Q 029788 174 EGLMTTVHSITGIVD 188 (188)
Q Consensus 174 ~~~vtTvha~s~~~~ 188 (188)
+++|||+|++|++|.
T Consensus 155 EgLMtTvha~tatQk 169 (285)
T KOG0657|consen 155 EGLMTTVHAITATQK 169 (285)
T ss_pred cccccceeeeccccc
Confidence 999999999999994
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=4.6e-41 Score=288.74 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=141.4
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChh---hhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD---YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 6 vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~---~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
|||||||||||.++|++.+++++++|+|||. +++ +++|+++|||.| ++....+++++ ..+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~-~~~~~~~~~~~-~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYA-ASEEFIPRFEE-AGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEe-ecCCcceEecc-CceEecCC--------
Confidence 6999999999999999988889999999995 677 788888899988 44412455533 33655543
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCcCCCCcEEEcCChhhHhHH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d--~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la 160 (188)
++++. .++|+|++|||.+.+++.++.|+++|+|+|++|+|++| +++||+|+|++.|.+.+ +|||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 45553 26999999999999999999999999999999999987 46899999999998644 9999999999999
Q ss_pred HHHHHHHHhcCceEEEEEEEeeccCCC
Q 029788 161 PLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 161 ~~lk~l~~~~gI~~~~vtTvha~s~~~ 187 (188)
|++|+|+++|||+++.|||+|+ |+||
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq 169 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADP 169 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCCh
Confidence 9999999999999999999997 9998
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-36 Score=261.29 Aligned_cols=166 Identities=25% Similarity=0.299 Sum_probs=133.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheec--cccccccccceEEeCCCceEECCEEEEEEee
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~yd--S~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||||||||||||.+++++.++|++++++++|. ++++.+|+++|. ..|++++ ...+. +++..+.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~-~~~~~-------~~~~~i~V~-- 69 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADP-EREKA-------FEEAGIPVA-- 69 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCc-ccccc-------ccCCceEEc--
Confidence 799999999999999999999999999999996 578999998842 1455554 22220 222233332
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC-CCC--eEEeecCccCcCCCCcEEEcCChhhHh
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAP--MFVVGVNEHEYKPELNIVSNASCTTNC 158 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~-d~p--~~V~gvN~~~~~~~~~ivs~~sCtT~~ 158 (188)
.+++++. .++|+||||||.+.+.+.++.|+++| ++||+++|++ ++| +||||||++.+... ++|+||||||||
T Consensus 70 ~~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT~~ 144 (341)
T PRK04207 70 GTIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNTTG 144 (341)
T ss_pred CChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHHHH
Confidence 1333332 26999999999999999999999999 6788888863 343 48999999998753 489999999999
Q ss_pred HHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 159 LAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 159 la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
|+|+||+||++|||+++.|||||++|+.
T Consensus 145 l~~~l~~L~~~fgI~~~~vTtv~a~td~ 172 (341)
T PRK04207 145 LCRTLCALDRAFGVKKVRATLVRRAADP 172 (341)
T ss_pred HHHHHHHHHHhcCceEEEEEEEEcCCCc
Confidence 9999999999999999999999999854
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.98 E-value=4.3e-32 Score=231.00 Aligned_cols=154 Identities=19% Similarity=0.302 Sum_probs=131.6
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|.+++||| |+ |.+||.+++.|.+|+ | ++.++ ++|. |. ..+ .|+.+.|+|+.+.|.
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-f---pv~~l--------~l~~--s~-------~~s--~gk~i~f~g~~~~V~ 56 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-L---EIEQI--------SIVE--IE-------PFG--EEQGIRFNNKAVEQI 56 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-C---chhhe--------eecc--cc-------ccc--CCCEEEECCEEEEEE
Confidence 66789999 99 999999999999994 7 55554 5554 30 011 367799999999996
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC--CCcEEEcC
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP--ELNIVSNA 152 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~--~~~ivs~~ 152 (188)
+++..+|+ ++|+||+ +|...++++++...++|| +|||++| +|+|++|||||++.+.. .++||+||
T Consensus 57 ---~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanP 128 (322)
T PRK06901 57 ---APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLP 128 (322)
T ss_pred ---ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECC
Confidence 45566775 7999999 998999999999889999 9999997 47999999999998875 35799999
Q ss_pred ChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 153 sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
||||.+|+++|+|||+.|||+++.+|||||+||.
T Consensus 129 NCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGa 162 (322)
T PRK06901 129 DPQVSQLALALAPFLQEQPLSQIFVTSLLPASYT 162 (322)
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhc
Confidence 9999999999999999999999999999999985
No 23
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=215.42 Aligned_cols=153 Identities=24% Similarity=0.397 Sum_probs=124.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcC-CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCc-eEECCEEEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKT-LLFGEKPVTVFG 80 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~-~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~-l~i~g~~i~v~~ 80 (188)
+||||+|+ |.+|+.+++.|.++ ++++.+.+-. | +.+ .|+. +.+.|+.+.+.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~A---------------S--------~rS--aG~~~~~f~~~~~~v~- 55 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLA---------------S--------ARS--AGKKYIEFGGKSIGVP- 55 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEe---------------c--------ccc--cCCccccccCccccCc-
Confidence 69999999 99999999999985 4454333322 2 111 1333 66777776653
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC--CCc-EEEcC
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP--ELN-IVSNA 152 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~--~~~-ivs~~ 152 (188)
+.-.+...|+ ++||||+|.|...+++.++...++|+ +|||++| +|+|++||+||++++.. .++ ||+||
T Consensus 56 ~~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 56 EDAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred cccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 2125667786 79999999999999999999999997 9999997 47999999999998754 244 99999
Q ss_pred ChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 153 sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
||||.+|+++||||+++|||+++.+|||||+||.
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGA 165 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGA 165 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhc
Confidence 9999999999999999999999999999999985
No 24
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.96 E-value=8.2e-29 Score=214.93 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=125.5
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||+|+ |.+||.+++.|+++++|+ +..+ +++. | ..+ .|+.+.++|+.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp---~~~~--------~~~s--s--------~~s--~g~~~~f~~~~~~v~--- 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFD---AIRP--------VFFS--T--------SQL--GQAAPSFGGTTGTLQ--- 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCc---cccE--------EEEE--c--------hhh--CCCcCCCCCCcceEE---
Confidence 38999999 999999999999666784 2222 3332 2 111 355677888877664
Q ss_pred CCCCC-CCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCCC--CcE--EEcC
Q 029788 83 NPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKPE--LNI--VSNA 152 (188)
Q Consensus 83 ~p~~~-~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~~--~~i--vs~~ 152 (188)
+.+++ .|. ++|+||+|+|...++++++...++|..++|||++| +|+|++||+||++.+..+ +.| |+||
T Consensus 55 ~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 55 DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 34343 554 79999999999999999999999995558999997 479999999999987642 567 8999
Q ss_pred ChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 153 sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
||||++|+++|+|||+.|||+++.+|||||+||.
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGA 166 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGG 166 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhc
Confidence 9999999999999999999999999999999985
No 25
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.95 E-value=1.4e-27 Score=206.16 Aligned_cols=149 Identities=25% Similarity=0.358 Sum_probs=124.6
Q ss_pred ceEEEEcc-CHHHHHHHHHHHc--CCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~--~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+||+|+|+ |.+|+.++|.|.+ +|.++++++.... + .|+.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-------------~-------------~g~~l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-------------S-------------AGKELSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-------------c-------------CCCeeeeCCceeEEe-
Confidence 59999999 9999999999998 5778888875421 1 123344556555553
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCcCCC--CcEEEcCC
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNEHEYKPE--LNIVSNAS 153 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~-----d~p~~V~gvN~~~~~~~--~~ivs~~s 153 (188)
+++..+|. ++|+||+|+|.+.+++.++.|+++|+ +||+.+++ ++|+++||+|++.++.. +++||||+
T Consensus 55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 45555784 79999999999999999999999998 78987752 48999999999999764 47999999
Q ss_pred hhhHhHHHHHHHHHHhcCceEEEEEEEeeccC
Q 029788 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 154 CtT~~la~~lk~l~~~~gI~~~~vtTvha~s~ 185 (188)
|+|+|++|+|+||+++|+|+++.|||+|++|+
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SG 160 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSG 160 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhh
Confidence 99999999999999999999999999999996
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.94 E-value=3.4e-26 Score=197.98 Aligned_cols=149 Identities=24% Similarity=0.364 Sum_probs=119.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHc--CCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 5 KIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~--~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
||+|+|+ |.+|+.++|.|.+ +|.++++.+... .+ .|+.+.+.|+.+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------~~-------------~g~~~~~~~~~~~~~-- 52 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------RS-------------AGRKVTFKGKELEVN-- 52 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------cc-------------CCCeeeeCCeeEEEE--
Confidence 6899999 9999999999988 455665554321 01 133355556555543
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC--CCcEEEcCCh
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP--ELNIVSNASC 154 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~--~~~ivs~~sC 154 (188)
+.+...|. ++|+||+|+|.+.+++.++.|+++|+ +||+.++ +++|+++||||++.++. .+++||||+|
T Consensus 53 -~~~~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 53 -EAKIESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred -eCChHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 22223453 79999999999999999999999998 6898875 25899999999999875 2459999999
Q ss_pred hhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 155 tT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
+|+|++++|+||+++|+|+++.|||+|++|+.
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSga 159 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGA 159 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhc
Confidence 99999999999999999999999999999986
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=1.7e-25 Score=193.53 Aligned_cols=154 Identities=19% Similarity=0.365 Sum_probs=125.7
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
.+||||+|+ |.+|+.++|+|.++|+|++.-+ +++ .| ..+ .|+.+.+.|+.+.+. +
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l-----------~~~--aS--------~~s--aGk~~~~~~~~l~v~-~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEV-----------TLL--SS--------KRS--AGKTVQFKGREIIIQ-E 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccE-----------EEE--EC--------ccc--CCCCeeeCCcceEEE-e
Confidence 479999999 9999999999998888963222 112 12 111 356677878777764 3
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCCCCcEEEcCChhh
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKPELNIVSNASCTT 156 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~~~~ivs~~sCtT 156 (188)
.+++. |. ++|+||+|+|...+++.++...++|+ +||++++ .|+|+++||||.+.+...++||+||+|+|
T Consensus 61 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 34543 53 79999999999999999998888887 8899986 36999999999998875447999999999
Q ss_pred HhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 157 ~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
+++...|+||+++++|+++.++|+|++||.
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGA 164 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGS 164 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeeccccc
Confidence 999999999999999999999999999984
No 28
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=6.4e-25 Score=189.57 Aligned_cols=152 Identities=25% Similarity=0.318 Sum_probs=127.4
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHc--CCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEE
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~--~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
+++||||+|+ |.+|+.++|+|.+ +|.++++.+... .| .|+.+.+.|+.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-------------~s-------------aG~~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-------------ES-------------AGETLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-------------Cc-------------CCceEEECCcceEE
Confidence 4689999999 9999999999998 688888777432 12 24456677766666
Q ss_pred EeecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC--CCcEEEc
Q 029788 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP--ELNIVSN 151 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~--~~~ivs~ 151 (188)
. ++++++|. ++|+||+|++...++++++...++|+ +||+.++ +++|+++||+|.+.++. ..++|+|
T Consensus 57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAn 129 (336)
T PRK08040 57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAV 129 (336)
T ss_pred E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEEC
Confidence 4 56677885 69999999999999999998888888 7898886 35899999999965543 4679999
Q ss_pred CChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 152 ~sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
|+|+|++++..|+||+++++|+++.|+|+|++||.
T Consensus 130 PgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGA 164 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAH 164 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEEeecccccc
Confidence 99999999999999999999999999999999984
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.93 E-value=2.2e-25 Score=193.94 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=121.1
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCce---EEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~---vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
+||||+|+ |.+|+.++|.++++++|+ ++... |. + ..++.+.++|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~s----------------s~---------~-sg~~~~~f~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFS----------------TS---------Q-AGGAAPSFGGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEec----------------ch---------h-hCCcccccCCCcceEE
Confidence 69999999 999999999777777785 33321 10 0 0233345667666665
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCCC--C--cEEE
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKPE--L--NIVS 150 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~~--~--~ivs 150 (188)
...+++ .|. ++|+||+|+|...++++++...++|++++||++++ +|+|++|||||++.+... + ++|+
T Consensus 56 ~~~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 323333 353 69999999999999999999888996668999987 369999999999987642 2 4899
Q ss_pred cCChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 151 ~~sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
||+|+|++++..|+||+++++|+++.++|||++||.
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGA 167 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGA 167 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeeccccc
Confidence 999999999999999999999999999999999984
No 30
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.90 E-value=3.9e-23 Score=178.64 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=122.6
Q ss_pred cceEEEEcc-CHHHHHHHHHHH--cCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 3 KVKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~--~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|+||+|+|+ |.+|+.++|+|. .+|.++++.+... ++ .|+.+.+.|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------~~-------------aG~~l~~~~~~l~~~ 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------ES-------------AGHSVPFAGKNLRVR 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------cc-------------CCCeeccCCcceEEe
Confidence 589999999 999999999999 5678887777543 11 133344555455543
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC----CCCCeEEeecCccCcCC--CCcEEEcCC
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS----KDAPMFVVGVNEHEYKP--ELNIVSNAS 153 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps----~d~p~~V~gvN~~~~~~--~~~ivs~~s 153 (188)
+++..+|+ ++|+||.|++...+.++++...++|+ .||+.++ +++|+++||+|.+.+.. ..++|+||+
T Consensus 58 ---~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPg 130 (336)
T PRK05671 58 ---EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPS 130 (336)
T ss_pred ---eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCC
Confidence 23333463 79999999999999999998888888 6788876 36999999999998764 257999999
Q ss_pred hhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 154 CtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
|+|+++...|+||++.++++++.++|+|++||.
T Consensus 131 C~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGa 163 (336)
T PRK05671 131 ASAVALAVALAPLKGLLDIQRVQVTACLAVSSL 163 (336)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEeecCccc
Confidence 999999999999999999999999999999985
No 31
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.89 E-value=2.4e-22 Score=174.21 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=120.5
Q ss_pred cceEEEEcc-CHHHHHHHHHHHc--CCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~--~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
++||+|+|+ |.+|+.++|.|.+ +|.+++..+... .| .|+.+.++|+.+.+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-------------rs-------------aGk~~~~~~~~~~v~ 60 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-------------RS-------------AGKKVTFEGRDYTVE 60 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-------------CC-------------CCCeeeecCceeEEE
Confidence 589999999 9999999999998 677877777432 11 123344445454443
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCCC------CcE
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKPE------LNI 148 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~~------~~i 148 (188)
..+++ .|. ++|+||+|+|...++++++...++|+ +||+.++ +++|+++||+|.+.+... +++
T Consensus 61 -~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 61 -ELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred -eCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 22333 343 79999999999999999998878887 7888886 358999999999987652 349
Q ss_pred EEcCChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCC
Q 029788 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 149 vs~~sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~ 186 (188)
|+||+|+|++++..|+||+++++|+++.++|+|++|+.
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGA 171 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGA 171 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeeccccc
Confidence 99999999999999999999999999999999999984
No 32
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.88 E-value=3.5e-22 Score=173.55 Aligned_cols=167 Identities=24% Similarity=0.323 Sum_probs=117.4
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
||++||+|+|+ |.+|+.++|.|.++|+++++.+.....+.. .. +++.++ +. + .+. +.-.-+.+.+.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G---~~--~~~~~~-~~-~-----~~~-~~~~~~~~~v~ 67 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAG---KT--YGEAVR-WQ-L-----DGP-IPEEVADMEVV 67 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcC---Cc--cccccc-cc-c-----ccc-ccccccceEEE
Confidence 77899999998 999999999999999999999932210100 00 011010 00 0 000 00000123332
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC----------
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP---------- 144 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~---------- 144 (188)
..+++. |. ++|+||+|++...+.+.++...++|++ +|+.++ ++.|++++++|++.|..
T Consensus 68 -~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~ 140 (349)
T PRK08664 68 -STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGW 140 (349)
T ss_pred -eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccC
Confidence 234554 32 699999999999888888877778884 455543 24789999999986632
Q ss_pred CCcEEEcCChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 145 ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 145 ~~~ivs~~sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
+.++|+||+|+|+|++++|+||++ |||+++.|||+|++|+.++
T Consensus 141 ~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~ 183 (349)
T PRK08664 141 DGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGY 183 (349)
T ss_pred CceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCc
Confidence 125999999999999999999999 9999999999999999763
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.86 E-value=3.9e-21 Score=166.50 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=117.4
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||+|+ |.+|+.+++.|.++|+++++++.+...+.. .. +...+..+ .+ ++ +.-.-..+.+. ..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g---~~--~~~~~~~~-----~~-~~--~~~~~~~~~~~-~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAG---KR--YGEAVKWI-----EP-GD--MPEYVRDLPIV-EP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcC---Cc--chhhcccc-----cc-CC--CccccceeEEE-eC
Confidence 48999999 999999999999999999999965421100 00 00000000 00 00 00000122332 22
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC---------CCcE
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP---------ELNI 148 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~---------~~~i 148 (188)
+++ .| .++|+||+|++...+.+.++...++|++ ||+.++ +++|+++|++|++.|.. ..++
T Consensus 67 ~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 67 EPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred CHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 333 34 3799999999999999998888788884 555554 35899999999987753 1259
Q ss_pred EEcCChhhHhHHHHHHHHHHhcCceEEEEEEEeeccCCCC
Q 029788 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIVD 188 (188)
Q Consensus 149 vs~~sCtT~~la~~lk~l~~~~gI~~~~vtTvha~s~~~~ 188 (188)
|+||+|+|+|++++|+||+++++|+++.|||+|++|+.+.
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~ 180 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGY 180 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCC
Confidence 9999999999999999999999999999999999999863
No 34
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.85 E-value=4.1e-22 Score=164.16 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=122.7
Q ss_pred CCcceEE-EEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEE
Q 029788 1 MGKVKIG-INGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~~~~va-InG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
|.-.|+| |+|+ |.+||+++-.|.+||+|++--+..+. .|...+|. -...|+.-..|.-.-..+.|
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~------------RSAGK~ya-~a~~wkqt~~lp~~~~e~~V 67 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASK------------RSAGKRYA-FAGNWKQTDLLPESAHEYTV 67 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccc------------cccCCceE-ecccchhcccccchhhhhhH
Confidence 5445777 9999 99999999999999999876664431 13222222 12222111112222235555
Q ss_pred EeecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC---C-----
Q 029788 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP---E----- 145 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~---~----- 145 (188)
.+-+++.|. ++||||+..+...+.|.-+...++|. +|+|+++ +++|++||+||+++++. .
T Consensus 68 -~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k 140 (361)
T KOG4777|consen 68 -EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGK 140 (361)
T ss_pred -hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCC
Confidence 345677664 79999999999888877666666666 8999986 35999999999998864 1
Q ss_pred ---CcEEEcCChhhHhHHHHHHHHHHhc-CceEEEEEEEeeccCC
Q 029788 146 ---LNIVSNASCTTNCLAPLAKVIHDKF-GIVEGLMTTVHSITGI 186 (188)
Q Consensus 146 ---~~ivs~~sCtT~~la~~lk~l~~~~-gI~~~~vtTvha~s~~ 186 (188)
.-||+|+||+|..+...|||||++| .|++..++||||+||.
T Consensus 141 ~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGA 185 (361)
T KOG4777|consen 141 MGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGA 185 (361)
T ss_pred CCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccC
Confidence 2599999999999999999999999 5999999999999974
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.83 E-value=8e-20 Score=158.46 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=117.7
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|| +||||+|+ |.+|+.+++.|.++|+++++++.+.....+. + ...|+++. + + . ...+
T Consensus 1 ~m-~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~----l--~~~~~~~~--------~--~-~---~~~~- 58 (343)
T PRK00436 1 MM-IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKP----L--SDVHPHLR--------G--L-V---DLVL- 58 (343)
T ss_pred CC-eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcc----h--HHhCcccc--------c--c-c---Ccee-
Confidence 54 89999999 9999999999999999999998773100000 0 01011111 0 0 0 0111
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC------C------------------CCeEEe
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------D------------------APMFVV 135 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~------d------------------~p~~V~ 135 (188)
. +.+...|. ++|+||.|++...+.+.+...+++|+ .||+++++ | .|..+|
T Consensus 59 ~--~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 E--PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred e--cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 1 22222343 69999999999999999988888776 78988752 3 689999
Q ss_pred ecCccCcCCCCcEEEcCChhhHhHHHHHHHHHHhcCce--EEEEEEEeeccCC
Q 029788 136 GVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITGI 186 (188)
Q Consensus 136 gvN~~~~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI~--~~~vtTvha~s~~ 186 (188)
|+|.+.+.. .++|+||+|+|+++...|+||++..+|+ ++.++|++++||.
T Consensus 133 e~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGa 184 (343)
T PRK00436 133 ELNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGA 184 (343)
T ss_pred ccCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccC
Confidence 999998874 5899999999999999999999998888 8999999999974
No 36
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.80 E-value=3.3e-19 Score=152.64 Aligned_cols=138 Identities=15% Similarity=0.163 Sum_probs=110.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||||+|+ |.+|+.++|.|.+||+++++.+... + ++.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~--------------~--------------~~~~------------ 41 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA--------------K--------------RKDA------------ 41 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC--------------C--------------CCcc------------
Confidence 489999999 9999999999999999998888542 0 1101
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC--CCcEEEcCCh
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP--ELNIVSNASC 154 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~--~~~ivs~~sC 154 (188)
.+....|. ++|+||.|++...++++++...++|+ +||+.++ +++|..+||+|++..+. ..++|+||+|
T Consensus 42 -~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC 116 (313)
T PRK11863 42 -AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGC 116 (313)
T ss_pred -cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCc
Confidence 01112343 68999999999999999998878888 6888876 35899999999765442 4679999999
Q ss_pred hhHhHHHHHHHHHHhcCceEEEEEEEeeccC
Q 029788 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 155 tT~~la~~lk~l~~~~gI~~~~vtTvha~s~ 185 (188)
.++++...|+||+++..|++...++++|+||
T Consensus 117 ~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG 147 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSG 147 (313)
T ss_pred HHHHHHHHHHHHHHcCCcccCceEEEEEccc
Confidence 9999999999999976666666799999975
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.79 E-value=1.5e-18 Score=150.80 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=115.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCE-EEEEEee
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~-~i~v~~~ 81 (188)
+||||+|+ |.+|+.++|.|.++|+++++++-++..+.. ..+ ...|+++. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sag---k~~--~~~~~~l~---------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAG---KPV--SEVHPHLR---------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcC---CCh--HHhCcccc---------------ccCCcee-ec
Confidence 48999999 999999999999999999998755321000 000 01111111 10 1111 11
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC----C--------------------CCCeEEeec
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS----K--------------------DAPMFVVGV 137 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps----~--------------------d~p~~V~gv 137 (188)
.++++ |.+ ++|+||.|++...+++.++..+++|+ +||+.++ + +.|..+||+
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12322 322 69999999999999999998888775 6888775 2 478999999
Q ss_pred CccCcCCCCcEEEcCChhhHhHHHHHHHHHHhcCce--EEEEEEEeeccCC
Q 029788 138 NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITGI 186 (188)
Q Consensus 138 N~~~~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI~--~~~vtTvha~s~~ 186 (188)
|.+.+.. .++|+||+|.++++...|+||+++..|+ ++.++|++++||.
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGa 184 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGA 184 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECccc
Confidence 9988864 6799999999999999999999998887 7999999999974
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.78 E-value=1.9e-18 Score=151.71 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=112.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||+|+|+ |.+|+.++|.|.+||+++++.+.... + .|+- +.. .. ..+.+....-+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~-------------s-aG~~----i~~-~~--~~l~~~~~~~~~- 95 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR-------------K-AGQS----FGS-VF--PHLITQDLPNLV- 95 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh-------------h-cCCC----chh-hC--ccccCcccccee-
Confidence 479999999 99999999999999999999886521 1 1110 000 00 001111111111
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC-----C--------CCeEEeecCccC-cC----
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----D--------APMFVVGVNEHE-YK---- 143 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~-----d--------~p~~V~gvN~~~-~~---- 143 (188)
+.+..+|. ++|+||.|+|...+++.++. +++|+ +||+.+++ + .|..+|++|.+. |.
T Consensus 96 -~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~ 169 (381)
T PLN02968 96 -AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTEL 169 (381)
T ss_pred -cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchh
Confidence 12222343 79999999999888888877 56665 67888752 3 689999999874 43
Q ss_pred -----CCCcEEEcCChhhHhHHHHHHHHHHhcCc--eEEEEEEEeeccCC
Q 029788 144 -----PELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITGI 186 (188)
Q Consensus 144 -----~~~~ivs~~sCtT~~la~~lk~l~~~~gI--~~~~vtTvha~s~~ 186 (188)
...++|+||+|.|+++...|+||+++++| +++.++|++++||.
T Consensus 170 ~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGA 219 (381)
T PLN02968 170 QREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGA 219 (381)
T ss_pred CHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeecccc
Confidence 13579999999999999999999999999 78999999999984
No 39
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.76 E-value=2.8e-18 Score=146.00 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=115.1
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+++||||+|.|.||+.++..+.+.++++++++.|...+.+-++.--+ +|. ...+ .+..- +
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~----~Gi----~~~~--------~~ie~-L-- 62 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR----LGV----ATSA--------EGIDG-L-- 62 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH----cCC----Cccc--------CCHHH-H--
Confidence 447999999999999998888887888999999987322222222111 111 0000 11000 0
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-CCCCeEEeecCccCcCC--CCcEEEcCChhhH
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEHEYKP--ELNIVSNASCTTN 157 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-~d~p~~V~gvN~~~~~~--~~~ivs~~sCtT~ 157 (188)
.+..+|. ++|+||+|||.....+.++..+++|+ .||+..+ ...|++||+||.+.+.. ..++|+||+|+|+
T Consensus 63 ---L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati 135 (302)
T PRK08300 63 ---LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATI 135 (302)
T ss_pred ---HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHH
Confidence 1122353 69999999999999999999999887 6777654 46999999999987654 3589999999999
Q ss_pred hHHHHHHHHHHhcCceEEEEEEEeecc
Q 029788 158 CLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (188)
Q Consensus 158 ~la~~lk~l~~~~gI~~~~vtTvha~s 184 (188)
.++..|+++++. ++.++. +||+|.|
T Consensus 136 ~~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 136 PIVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHhcccCcC-ceeeee-eeehhhc
Confidence 999999998764 888877 9999988
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.73 E-value=2.2e-17 Score=140.88 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=110.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
.||+|.|+ |-.|..++|.|..||++|++.+.... + |. ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-------~----------~~-----------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-------R----------KD-----------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-------c----------cC-----------------------cC
Confidence 58999999 99999999999999999999986521 0 00 00
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCcCC--CCcEEEcCChh
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNEHEYKP--ELNIVSNASCT 155 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-----~d~p~~V~gvN~~~~~~--~~~ivs~~sCt 155 (188)
+++.+ + .++|+||.|++...++++++...++|+ .||+.++ ++.|..+||+|++..+. ..++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11122 1 158999999999999999988777777 6888875 35899999999775442 46899999999
Q ss_pred hHhHHHHHHHHHHhcCceEEEEEEEeeccC
Q 029788 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 156 T~~la~~lk~l~~~~gI~~~~vtTvha~s~ 185 (188)
++++...|+||+++..|++...++++|+|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999987777776899999987
No 41
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.58 E-value=1.2e-14 Score=123.09 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=110.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||+|.|+||+.++..+.+.++++++++.++..+.+-+...-+ +|. . ..+.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~----~Gi----~--------~~~~~---------- 55 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE----LGV----K--------TSAEG---------- 55 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH----CCC----C--------EEECC----------
Confidence 799999999999988877777778999999987322211111111 110 0 11111
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC-CCCCCCeEEeecCccCcCC--CCcEEEcCChhhHhHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA-PSKDAPMFVVGVNEHEYKP--ELNIVSNASCTTNCLA 160 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~-ps~d~p~~V~gvN~~~~~~--~~~ivs~~sCtT~~la 160 (188)
.+.+ ..+.++|+||+||+.....+.+...+++|. .||+. |....|+++|+||.+.... ..++|++++|+|+.+.
T Consensus 56 ~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 56 VDGL-LANPDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred HHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 1100 001268999999999999999999998887 55555 4457999999999886543 4689999999999999
Q ss_pred HHHHHHHHhcCceEEEEEEEeeccC
Q 029788 161 PLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 161 ~~lk~l~~~~gI~~~~vtTvha~s~ 185 (188)
..++++++...+ ..++||++.|.
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999987755 57788999985
No 42
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.33 E-value=8.7e-13 Score=98.17 Aligned_cols=113 Identities=27% Similarity=0.325 Sum_probs=78.2
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
||||+|+ |.+|+.++|.|.++|+++++.+-....+. -.++...++.+. ....+.+. ..+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-----g~~~~~~~~~~~--------------~~~~~~~~-~~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-----GKPLSEVFPHPK--------------GFEDLSVE-DAD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-----TSBHHHTTGGGT--------------TTEEEBEE-ETS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-----CCeeehhccccc--------------cccceeEe-ecc
Confidence 7999997 99999999999999999999987653200 111111111111 01123332 223
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCcC
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNEHEYK 143 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~-----d~p~~V~gvN~~~~~ 143 (188)
++.+ .++|+||.|++...+++.++..++.|+ .||+.+++ +.|+.+||+|.+++.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 279999999999999999999999999 68888762 589999999988763
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.98 E-value=3.8e-09 Score=91.10 Aligned_cols=156 Identities=17% Similarity=0.258 Sum_probs=99.5
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
|+||+|+|+ |-.|-.++|.|..||++|+..+.... ... -.....|..+. |. + ..+. +.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~-~~g-----~~~~~~~p~l~--------g~---~---~l~~-~~ 60 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE-RAG-----KPVSDVHPNLR--------GL---V---DLPF-QT 60 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh-hcC-----CchHHhCcccc--------cc---c---cccc-cc
Confidence 489999999 99999999999999999966665431 000 00001111111 10 0 1111 22
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC----------------C-C----CeEEe---ec
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK----------------D-A----PMFVV---GV 137 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~----------------d-~----p~~V~---gv 137 (188)
.+++.+ ...++|+||.|++...+++.++..++.|++ ||+.+.+ . . .--|| |.
T Consensus 61 ~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl 136 (349)
T COG0002 61 IDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPEL 136 (349)
T ss_pred CChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCccc
Confidence 345544 223689999999999999999999988885 7776542 0 1 12333 45
Q ss_pred CccCcCCCCcEEEcCChhhHhHHHHHHHHHHhcCce-EEEEEEEeeccC
Q 029788 138 NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV-EGLMTTVHSITG 185 (188)
Q Consensus 138 N~~~~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI~-~~~vtTvha~s~ 185 (188)
|.+++. +.+.|+||.|-.+|...+|+||-++ ||- --..-++.+.||
T Consensus 137 ~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~-~ll~~~~~~ivdakSG 183 (349)
T COG0002 137 HREKIR-GAKLIANPGCYPTAAILALAPLVKA-GLLDPDSPPIVDAKSG 183 (349)
T ss_pred CHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc-CCcCCCCceEEEEeEe
Confidence 555554 3579999999999999999999875 432 222224566555
No 44
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.71 E-value=3.8e-08 Score=72.85 Aligned_cols=113 Identities=24% Similarity=0.239 Sum_probs=69.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
|+||+|+ |++|+.+++.+.+.++++++++.... + + .|+- .....++ + . .+ +.. +
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~---~---------~-~~~~----~~~~~~~-~--~--~~-~~~--~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA---R---------S-AGKR----VSEAGPH-L--K--GE-VVL--E 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech---h---------h-cCcC----HHHHCcc-c--c--cc-ccc--c
Confidence 6899997 99999999999998899999995431 0 0 0110 0000000 1 0 00 001 1
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHh-CCCcEEEEeCCC-----CCCCeEEeecCccCc
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK-GGAKKVIISAPS-----KDAPMFVVGVNEHEY 142 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~-aGak~vvis~ps-----~d~p~~V~gvN~~~~ 142 (188)
.+...|...++|+||.|++.....+.+...+. +..+++||+.++ .+.|+.+|++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHh
Confidence 22223443479999999988776664432221 244458888775 357999999998754
No 45
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.30 E-value=3.4e-06 Score=70.91 Aligned_cols=145 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||+|+|+||+.+++.+.+.++++++++.+.....+... .. + +..+.++ .+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--------------~~--------~---~~~~~~~--~d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--------------RA--------L---GEAVRVV--SS 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--------------hh--------h---ccCCeee--CC
Confidence 69999999999999999999888899999875411111000 00 0 0012222 24
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC--CCCCeEEeecCccCcCCCCcEEEcCChhhHhHHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS--KDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps--~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~ 161 (188)
++.+. ..+|+|+|||+.....+.+...+++|.. |++-.|. .| +-+...+..-.-.....+.- ++- ......
T Consensus 55 ~~~l~---~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~~Al~d-~~~~~~L~~~A~~~g~~l~v-~sg-a~gg~d 127 (265)
T PRK13303 55 VDALP---QRPDLVVECAGHAALKEHVVPILKAGID-CAVISVGALAD-EALRERLEQAAEAGGARLHL-LSG-AIGGID 127 (265)
T ss_pred HHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeChHHhcC-HHHHHHHHHHHHHCCCEEEE-eCh-HhhCHH
Confidence 44442 3689999999988888999999999875 4443332 12 10100010000001112222 221 113345
Q ss_pred HHHHHHHhcCceEEEEEEEeec
Q 029788 162 LAKVIHDKFGIVEGLMTTVHSI 183 (188)
Q Consensus 162 ~lk~l~~~~gI~~~~vtTvha~ 183 (188)
+++.. +.-|++.+.+++.+..
T Consensus 128 ~l~~~-~~g~~~~v~~~~~k~p 148 (265)
T PRK13303 128 ALAAA-KEGGLDEVTYTGRKPP 148 (265)
T ss_pred HHHHH-HhCCceEEEEEEecCh
Confidence 55543 3467999998887654
No 46
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.23 E-value=3.5e-06 Score=72.78 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=63.7
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+++||||+|+|.||+.+++++..+|+++++++-+.. +++.+. .. + .+..
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~-----~~-----------------~-------~v~~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD-----TE-----------------T-------PVYA 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh-----hc-----------------C-------Cccc
Confidence 7789999999999999999999999999999998863 112110 00 0 0000
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
..+.+. +. .++|+|+-||+.....+.+...+++|.. ||-|-
T Consensus 51 ~~d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~ 91 (324)
T TIGR01921 51 VADDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSF 91 (324)
T ss_pred cCCHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECC
Confidence 011111 11 3689999999999999999999998874 44443
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.20 E-value=1.9e-06 Score=72.39 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=84.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcC--CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~--~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+.||||+|+|.||+.+.+.+... +.++++++++.. ++....+. +. ..+.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~--~~~~~~~~------------------~~--------~~~~- 52 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA--ADLPPALA------------------GR--------VALL- 52 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC--HHHHHHhh------------------cc--------Cccc-
Confidence 58999999999999999988754 348999998862 21110000 00 1111
Q ss_pred ecCCCCC-CCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-CCCCeEEeecCccCcC---CCCcEEEcCChh
Q 029788 81 VRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEHEYK---PELNIVSNASCT 155 (188)
Q Consensus 81 ~~~p~~~-~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-~d~p~~V~gvN~~~~~---~~~~ivs~~sCt 155 (188)
.+++++ .| ..|+|+||.+...-++++++.|++|+.-+++|-.. .|.- | ..+..+ ....-|--||=.
T Consensus 53 -~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~-~----~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 53 -DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDA-L----RARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred -CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHH-H----HHHHHHHHHhCCCEEEEeChH
Confidence 245554 44 58999999999999999999999999877776432 3310 1 111110 011222334544
Q ss_pred hHhHHHHHHHHHHhcCceEEEEEEEe
Q 029788 156 TNCLAPLAKVIHDKFGIVEGLMTTVH 181 (188)
Q Consensus 156 T~~la~~lk~l~~~~gI~~~~vtTvh 181 (188)
.-.|--+- .. ...|++++.+||--
T Consensus 124 igGlD~l~-aa-~~~~~~~v~~~t~K 147 (267)
T PRK13301 124 IAGLDYLQ-AV-AGRDDAEVVYESRK 147 (267)
T ss_pred HHhHHHHH-Hh-hccCceEEEEEEec
Confidence 44443332 22 33678888887753
No 48
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.15 E-value=9.5e-06 Score=68.45 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCcceEEEEccCHHHHHHHHHHHc-CCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEE
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~-~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|+++||||+|+|+||+.+++.+.. .++++++++.|. +++...-+.+ .+|. .. .
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a~---~~g~----------~~----------~- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFIW---GLRR----------PP----------P- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHHH---hcCC----------Cc----------c-
Confidence 567999999999999999999887 478999999887 3332111110 0000 00 0
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCc
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak 119 (188)
..+++++.. ++|+|++|++.....+.+...+++|..
T Consensus 58 -~~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 58 -VVPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred -cCCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 013333422 479999999988888888888888764
No 49
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.08 E-value=7.1e-06 Score=69.01 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=61.2
Q ss_pred ceEEEEc-cCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG-~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+| +|++|+.+++.+.++|+++++++.|.. +++.. .+|. +... + +.-.| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~~-------~~~~---~--~~~~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTDA-------GELA---G--IGKVG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCCH-------HHhc---C--cCcCC--ceee--C
Confidence 6999999 599999999999988899999998832 11110 0010 0100 0 00001 2222 2
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
+++.+. ..+|+|+|||......+.+...+++|.. +|+
T Consensus 61 d~~~l~---~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAVE---TDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHhc---CCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 444441 2589999999888888888888888875 444
No 50
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.95 E-value=5e-05 Score=63.61 Aligned_cols=96 Identities=26% Similarity=0.331 Sum_probs=61.6
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||+|+|+ ||+||.+++++.+.|++++++.-+...+. ..|+-. +..- + ++-..+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----------~~g~d~-ge~~---g----~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----------SLGSDA-GELA---G----LGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----------ccccch-hhhc---c----ccccCceee--
Confidence 489999999 99999999999999999999887753111 111111 1110 0 111122332
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
.++. -.+.+.|+++|-|-...+.+.++..++.|.+ .||
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~-lVI 98 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKP-LVI 98 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCC-eEE
Confidence 1211 1223689999999888888888888888865 444
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.94 E-value=4.6e-05 Score=62.60 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=65.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcC-CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~-~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++|||+|+|+||+.+++.+.+. .+|+++++.|. +.+..-.+.+ | +.++.. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~~--~-------------------~~~~~~-----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELEA--S-------------------VGRRCV-----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHHh--h-------------------cCCCcc-----c
Confidence 4899999999999999988855 36999999986 3443323321 1 111110 1
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
+.+++- .++|+++||.+..--++.+++.|++|...+|+|-.
T Consensus 53 ~ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 53 DIDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred cHHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence 222221 26899999999888889999999999998888765
No 52
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.93 E-value=4.6e-05 Score=66.31 Aligned_cols=34 Identities=35% Similarity=0.720 Sum_probs=30.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC---------CceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~---------~~~vv~Ind~ 36 (188)
++||||.|+|.||+.+++.+.+++ ++++++|.|.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 599999999999999999987653 6999999885
No 53
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.87 E-value=3.6e-05 Score=64.39 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=55.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+|+ |++|+.+++.+.+.++++++++.|.. ++..... + .. .+.+. .
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~--~~~~~~~---~--------------~~--------~i~~~--~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP--GSPLVGQ---G--------------AL--------GVAIT--D 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--Ccccccc---C--------------CC--------Ccccc--C
Confidence 69999999 99999999999888889999998862 1110000 0 00 01111 1
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCc
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak 119 (188)
+.+.+- . ++|+|+++|......+.+...+++|..
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~ 86 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP 86 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC
Confidence 333321 1 478888888766667778888888774
No 54
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.86 E-value=2.6e-05 Score=69.80 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=57.8
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC---------CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEE
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~---------~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i 71 (188)
|+++||||+|+|.||+.+++.+.+++ ++++++|.+.. ++.. + ... .
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~--~~~~------~---------~~~--------~ 55 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD--LEKD------R---------GVD--------L 55 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC--hhhc------c---------CCC--------C
Confidence 77799999999999999999886542 58999998862 2110 0 000 0
Q ss_pred CCEEEEEEeecCCCCCCCcCCCccEEEeecCCc-cCHhhHHHHHhCCCcEEEEeC
Q 029788 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 72 ~g~~i~v~~~~~p~~~~w~~~~vdiV~e~tg~~-~~~~~~~~~l~aGak~vvis~ 125 (188)
.+ ..++ .+++++ ..+.++|+|+||||.. ...+.....+++|. -|+++
T Consensus 56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 00 0111 123222 1223689999999753 34567778888775 55653
No 55
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.82 E-value=6.6e-05 Score=63.07 Aligned_cols=88 Identities=26% Similarity=0.384 Sum_probs=59.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||+|+|+||+.+++.+.+.+ +++++++.|. +.+....+.+ . -+ ..++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~-------------~--~~---------~~~~--~ 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS-------------K--TG---------AKAC--L 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH-------------h--cC---------CeeE--C
Confidence 59999999999999999988764 7999999987 3332222111 0 01 0111 1
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEE
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vv 122 (188)
+.+++. .++|+|++|++...-.+.++..+++|..-++
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVII 90 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEE
Confidence 344443 1589999999888778888888888865333
No 56
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.66 E-value=0.00015 Score=52.71 Aligned_cols=94 Identities=30% Similarity=0.521 Sum_probs=64.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcC-CCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~-~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||+|+|.+|+..++.+... +++++++|.|+ +++......+ +| + + + .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~------~~---------~--~-----~--~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFAE------KY---------G--I-----P--VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHHH------HT---------T--S-----E--EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHHH------Hh---------c--c-----c--ch--h
Confidence 5899999999999999988877 78999999997 4433222111 00 0 0 0 11 1
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps 127 (188)
+.+++. ++.++|+|+-||+.....+.+...+++|. -|++.-|-
T Consensus 53 ~~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 222221 22369999999999988899999999988 46666663
No 57
>PRK11579 putative oxidoreductase; Provisional
Probab=97.51 E-value=0.0007 Score=58.61 Aligned_cols=94 Identities=26% Similarity=0.423 Sum_probs=62.5
Q ss_pred CC-cceEEEEccCHHHHH-HHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEE
Q 029788 1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~-~~~vaInG~GrIGr~-~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
|+ ++||||+|+|.||+. .++.+...+++++++|.|. +.+... -+ |. +. .+
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~--~~-------~~-~~----------------~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVK--AD-------WP-TV----------------TV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHH--hh-------CC-CC----------------ce
Confidence 54 589999999999985 5677777788999999997 333221 00 11 00 01
Q ss_pred EeecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
+ .+.+++- .+.++|+|+-||+.....+.+...+++|. -|++--|
T Consensus 53 ~--~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 53 V--SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred e--CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 1 1222221 12368999999999999999999998885 3555545
No 58
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.51 E-value=0.00016 Score=53.97 Aligned_cols=92 Identities=32% Similarity=0.371 Sum_probs=55.8
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+|+ ||+||.+++.+.++++++++++-+...+. ..|+-- +.+- + .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-----------~~g~d~-g~~~---~----~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-----------KVGKDV-GELA---G----IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-----------TTTSBC-HHHC---T----SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-----------cccchh-hhhh---C----cCCcccccc--h
Confidence 59999999 99999999999998999999998874211 011110 1100 0 001112221 2
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCc
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak 119 (188)
+.+.+. ..+|+++|.|-.....+.++..++.|..
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 333322 1389999999777777778888888774
No 59
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00035 Score=60.64 Aligned_cols=36 Identities=33% Similarity=0.674 Sum_probs=31.2
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC---------CceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~---------~~~vv~Ind~ 36 (188)
||++||+|.|||-||+.++|.+.+++ ++++++|.+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 78899999999999999999998642 4788888875
No 60
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.49 E-value=0.0002 Score=62.52 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=28.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC---------CceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~---------~~~vv~Ind~ 36 (188)
+++|+|.|||.||+.+++.|.++. +++|++|.+.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 489999999999999999986432 4789999875
No 61
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.48 E-value=9.9e-05 Score=64.15 Aligned_cols=109 Identities=28% Similarity=0.406 Sum_probs=58.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC---------CceEEEEeCCCCChhhhhhhheeccccccccccceEEe-CCCceE-E
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-DDKTLL-F 71 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~---------~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~-~~~~l~-i 71 (188)
++||+|.|||-||+.+++.+.++. ++++++|.|.... .|+. .|--.....+.. ....+. +
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~--------~~~~-~Gid~~~l~~~~~~~~~~~~~ 72 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGT--------IWLP-EDIDLREAKEVKENFGKLSNW 72 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCcc--------ccCC-CCCChHHHHHhhhccCchhhc
Confidence 599999999999999999887631 3889999885311 1111 010000000000 000010 0
Q ss_pred CCEEEEEEeecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 72 ~g~~i~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
. ...... ..+++++ +.+..+|+++|+|+.....+.....++.|. -|+++
T Consensus 73 ~-~~~~~~-~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVta 121 (336)
T PRK08374 73 G-NDYEVY-NFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTS 121 (336)
T ss_pred c-cccccc-CCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEEC
Confidence 0 000000 0012222 223468999999988777777778888877 44544
No 62
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.41 E-value=0.00018 Score=62.43 Aligned_cols=33 Identities=36% Similarity=0.702 Sum_probs=28.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcC-------CCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~-------~~~~vv~Ind~ 36 (188)
+||+|.|||.||+.+++.|.++ .++++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 3899999999999999998764 36899999886
No 63
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.32 E-value=0.00084 Score=57.14 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.3
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+||.|||+ |++||.+.+++.+ ++|++|+..|+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~ 44 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFT 44 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecc
Confidence 489999999 9999999999998 78999998775
No 64
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.19 E-value=0.00032 Score=51.37 Aligned_cols=86 Identities=27% Similarity=0.408 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHcCC---CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCCCC
Q 029788 10 GFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEE 86 (188)
Q Consensus 10 G~GrIGr~~lr~l~~~~---~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~~ 86 (188)
|+|.||+.+++.+.++. ++++++|.+.. . ++..+ +. . .. .+. ... .++++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~------~~~~~-----~~--~-~~-~~~-~~~----------~~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-M------LISKD-----WA--A-SF-PDE-AFT----------TDLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-E------EEETT-----HH--H-HH-THS-CEE----------SSHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-c------hhhhh-----hh--h-hc-ccc-ccc----------CCHHH
Confidence 89999999999998775 79999999863 1 00000 00 0 00 000 000 11211
Q ss_pred -CCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 87 -IPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 87 -~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
+.| ..+|+|+|||+.....+..+..++.|. -||+++
T Consensus 54 ~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~n 90 (117)
T PF03447_consen 54 LIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTAN 90 (117)
T ss_dssp HHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES-
T ss_pred HhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEEC
Confidence 111 158999999998888888889998887 556543
No 65
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.09 E-value=0.0038 Score=50.96 Aligned_cols=133 Identities=22% Similarity=0.313 Sum_probs=77.7
Q ss_pred cceEEEEccCHHHHHHHHHHHcC-CCceEEEEeCCCCChhhhhhhhee--ccccccccccceEEeCCCceEECCEEEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKY--DSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~-~~~~vv~Ind~~~~~~~~a~ll~y--dS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
+.||+|+|.|.||.-++--++.+ .++|.-..--+....+-++...+. ..|| +| + . .+.
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~-----------eg--v--~----~ll 64 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTH-----------EG--V--I----GLL 64 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchh-----------hH--H--H----HHH
Confidence 68999999999999766555555 345543333221122333332221 1111 11 0 0 011
Q ss_pred eecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC-CCCCCCeEEeecCcc-CcCC-CCcEEEcCChhh
Q 029788 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA-PSKDAPMFVVGVNEH-EYKP-ELNIVSNASCTT 156 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~-ps~d~p~~V~gvN~~-~~~~-~~~ivs~~sCtT 156 (188)
+-|+ | .++|+|||+|......+.+.+..++|.+- |+- |.+--|-+||-+|.+ +++. .-+.|++..
T Consensus 65 --~~p~---~--~di~lvfdatsa~~h~~~a~~~ae~gi~~--idltpaaigp~vvp~~n~~eh~~a~nvnmvtcgg--- 132 (310)
T COG4569 65 --NMPE---F--ADIDLVFDATSAGAHVKNAAALAEAGIRL--IDLTPAAIGPYVVPVVNLEEHVDALNVNMVTCGG--- 132 (310)
T ss_pred --hCCC---C--CCcceEEeccccchhhcchHhHHhcCCce--eecchhccCCeeccccchHHhcCCCCcceEeecC---
Confidence 1122 2 26899999999999888888888899854 443 333479999999986 4543 456775544
Q ss_pred HhHHHHHHHH
Q 029788 157 NCLAPLAKVI 166 (188)
Q Consensus 157 ~~la~~lk~l 166 (188)
.+-.|++...
T Consensus 133 qatipiv~av 142 (310)
T COG4569 133 QATIPIVAAV 142 (310)
T ss_pred cccchhhhhh
Confidence 4444444443
No 66
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0012 Score=57.71 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=36.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhh
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY 45 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ 45 (188)
++|||++|+|..|+-++-....-|++++|+|+|...+....+|
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~ 59 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY 59 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH
Confidence 5899999999999998888887789999999998766555444
No 67
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.97 E-value=0.0046 Score=52.70 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=62.4
Q ss_pred CCcceEEEEccCHHHH-HHHHHHHcCCC-ceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEE
Q 029788 1 MGKVKIGINGFGRIGR-LVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~~~~vaInG~GrIGr-~~lr~l~~~~~-~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
|+++||||+|+|.+++ ..+..+.+.++ ++++++.|+ +++....+.+ .+|- . ..
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a~---~~~~----~----------------~~ 55 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFAE---EFGI----A----------------KA 55 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHHH---HcCC----C----------------cc
Confidence 6789999999986665 57888887776 799999987 4443222211 1110 0 01
Q ss_pred EeecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
+ .+.+++- .+.++|+|+=||+.....+.+...|++|. -|++--|
T Consensus 56 ~--~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 56 Y--TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred c--CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 0 1122211 11248999999999999999999998886 2444444
No 68
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.85 E-value=0.022 Score=46.89 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=30.9
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
+.+||+|.|||.||+.+++.|.+. +.++++|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 458999999999999999999877 6999999996
No 69
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.85 E-value=0.0035 Score=55.44 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=64.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhhe-eccccccccccceEEeCCC---ceE--ECCEE
Q 029788 4 VKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TLL--FGEKP 75 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll~-ydS~~g~~~~~~v~~~~~~---~l~--i~g~~ 75 (188)
.||+|+|. |.||+..++.+...| .|+++++..- .+.+.+..+.+ |.. .-+-..+.+ .|. +.+..
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~~~f~p-------~~v~i~~~~~~~~l~~~l~~~~ 73 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQAREFRP-------KYVVVADEEAAKELKEALAAAG 73 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhccCC
Confidence 59999997 999999999988765 6999999832 24544433332 111 011110100 010 11112
Q ss_pred EEEEeec-CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 76 VTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 76 i~v~~~~-~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
+.++... .+.++- ...++|+|+.+++.+...+..-..+++|. +|.+.+
T Consensus 74 ~~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaLAN 122 (385)
T PRK05447 74 IEVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIALAN 122 (385)
T ss_pred ceEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEEeC
Confidence 2333322 122221 11269999999988888777778888884 455533
No 70
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.79 E-value=0.022 Score=46.59 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=31.6
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~ 38 (188)
+..||+|-|||.+|+.+++.|.+. +..+|+|.|...
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 347999999999999999999987 589999999743
No 71
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.72 E-value=0.016 Score=48.66 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=62.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------Chhhhhhhheecccccc-ccccceEEeCCCceEECC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~~g~-~~~~~v~~~~~~~l~i~g 73 (188)
..||+|-|||.||+.+++.|.+. +.++|+|+|... |++.+..++.++..++. .. .+. ..+.+
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~----~~~----~~~~~ 108 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS----EYA----KKYGT 108 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH----HHh----hcCCC
Confidence 36999999999999999999887 599999998532 33334344433321111 00 000 00111
Q ss_pred EEEEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEEeC
Q 029788 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvis~ 125 (188)
.+. .+++++ |. ..+|+.+=|. +.-++.+.++.-.+.+|| +|+-+
T Consensus 109 --a~~---~~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~Eg 153 (254)
T cd05313 109 --AKY---FEGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVAEG 153 (254)
T ss_pred --CEE---eCCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEEeC
Confidence 011 133433 54 4689888776 777787877765555775 45533
No 72
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.65 E-value=0.0077 Score=54.38 Aligned_cols=100 Identities=13% Similarity=0.225 Sum_probs=61.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------Chhhhhhhheecccc-ccccccceEEeCCCceEECC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE 73 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~~-g~~~~~~v~~~~~~~l~i~g 73 (188)
..||+|-|||.||+.+++.|.+. +.+||+|+|..+ |++ .|++|-..+ |+.. .+.+. . |
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~---~L~~~k~~~~~~l~----~~~~~----~-~ 298 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLE---KLKEIKEVRRGRIS----EYAEE----F-G 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHH---HHHHHHHhcCCchh----hhhhh----c-C
Confidence 47999999999999999999887 599999999422 222 223221111 1111 00000 0 1
Q ss_pred EEEEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEE
Q 029788 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvi 123 (188)
... .+++.+ |. ..+|+.+.|+ +..++.+.+..+.+.+|| +|+
T Consensus 299 --~~~---i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 299 --AEY---LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred --Cee---cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 001 123332 54 4799999999 777788888888777785 455
No 73
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.64 E-value=0.0045 Score=52.46 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=26.6
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEE
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~I 33 (188)
+||.|||+ |++||.+.+++.+ +++++|+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEee
Confidence 48999999 9999999999888 78999986
No 74
>PRK10206 putative oxidoreductase; Provisional
Probab=96.58 E-value=0.0096 Score=51.74 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=58.6
Q ss_pred ceEEEEccCHHHH-HHHHHHHc-CCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 4 VKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~GrIGr-~~lr~l~~-~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||||+|+|++++ ..++.+.. .+++++++|.|.. .+.....-+|.- + .++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~--~~~~~~~~~~~~-----------------~-------~~~-- 53 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH--AKPEEQAPIYSH-----------------I-------HFT-- 53 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC--hhHHHHHHhcCC-----------------C-------ccc--
Confidence 7999999999875 45666644 4579999999973 221111111110 0 011
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
.+.+++ ..+.++|+|+-||+.....+.+...+++|. -|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcCC-cEEEecC
Confidence 122222 122368999999999999999999998884 4555555
No 75
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.37 E-value=0.011 Score=58.39 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=63.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCce------------EEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLL 70 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~------------vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~ 70 (188)
+.||+|+|+|+||+.+++.|.+.++++ +|+|.|+ +++....+.+- ++ .+ +.+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~~------~~--~~-----~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVEG------IE--NA-----EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHHh------cC--CC-----ceEE
Confidence 468999999999999999998877766 6888887 34333222210 00 00 0011
Q ss_pred ECCEEEEEEeecCCCCCC-CcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 71 FGEKPVTVFGVRNPEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 71 i~g~~i~v~~~~~p~~~~-w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
+ .+ .|++++. +- .++|+|+.|++.....+-+...+++|. -+++..
T Consensus 634 l-----Dv---~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGk--Hvv~ek 679 (1042)
T PLN02819 634 L-----DV---SDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKK--HLVTAS 679 (1042)
T ss_pred e-----ec---CCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCC--CEEECc
Confidence 1 11 1333221 10 259999999999999999999999887 445543
No 76
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.016 Score=48.53 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=30.6
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..|||..|+ |-.|+.++|++..+|++|+..+..
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvss 52 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSS 52 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeeh
Confidence 479999999 999999999999999999988875
No 77
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.04 E-value=0.019 Score=46.48 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=58.2
Q ss_pred cceEEEEccCHHHHHHHHHHH-cCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~-~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
..||+|+|+|.+|+.+++.+. ...+++++++-|. +++.. +. .++|.++ ...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------------------~~--~i~g~~v--~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------------------GT--KIGGIPV--YHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------------------CC--EeCCeEE--cCH
Confidence 468999999999999988643 3457999999875 22110 10 0122222 111
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
.+..++ ..+.++|.|+.|++.....+.....+++|.+.++...|
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 122222 12346999999998776666666777788765544344
No 78
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.02 E-value=0.031 Score=49.62 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=60.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||-|+|+|.||+.+++.|..+.+.+|..... +.+..+.... +..++ ++ .+.++ + .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdR---s~~~~~~i~~--~~~~~-----v~-----~~~vD-----~---~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADR---SKEKCARIAE--LIGGK-----VE-----ALQVD-----A---AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeC---CHHHHHHHHh--hcccc-----ce-----eEEec-----c---cC
Confidence 59999999999999999998887777755543 3444434332 21111 11 12221 1 01
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
.+.+.=--.+.|+|+.|.+.|.+..-++..+++|..-+-+
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDt 98 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDT 98 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEc
Confidence 1111000014599999999999998888999999854333
No 79
>PLN02477 glutamate dehydrogenase
Probab=95.95 E-value=0.11 Score=46.60 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~ 37 (188)
..+|+|-|||.||+.+++.|.+. +.+||+|+|..
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~ 239 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT 239 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 36899999999999999999887 59999999974
No 80
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.043 Score=46.54 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=77.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhhee-----c--cccccccccceEEeCCCceEECCEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-----D--SVHGQWKHHELKVKDDKTLLFGEKPV 76 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~y-----d--S~~g~~~~~~v~~~~~~~l~i~g~~i 76 (188)
.||||+|+|.+|+.++..+... +++++-.+- +++.+....++ | -..|... .. .. .. . .+ .+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~-~~-~~--~~-~-~~--~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFET---TEELATAGRNRIEKSLERAVSRGKLT-ER-ER--DA-A-LA--RL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEEC---CHHHHHHHHHHHHHHHHHHHhcccCC-hh-hH--HH-H-Hh--Ce
Confidence 5899999999999999888877 588766643 34433331110 0 0012111 00 00 00 0 11 23
Q ss_pred EEEeecCCCCCCCcCCCccEEEeecCCccCHhhH-----HHHH-hCCCcEEEEeCCCC----------CCCe---EEeec
Q 029788 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-----AAHL-KGGAKKVIISAPSK----------DAPM---FVVGV 137 (188)
Q Consensus 77 ~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~-----~~~l-~aGak~vvis~ps~----------d~p~---~V~gv 137 (188)
++. .+++.+ .++|+||||.......+.. +.+. ..++ ++.|+.|. ..|- -.--.
T Consensus 74 ~~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 74 RFT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred Eee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 322 344433 3799999998655543322 2333 3344 88887752 1221 11223
Q ss_pred CccCcCCCCcEEEcCChhhHhHHHHHHHHHHhcCc
Q 029788 138 NEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172 (188)
Q Consensus 138 N~~~~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI 172 (188)
|+-.+.+--.|+..+.++...++.+...+.+.+|-
T Consensus 146 ~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 146 NPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 33222222357777777777777666665555553
No 81
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.79 E-value=0.023 Score=45.76 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=63.0
Q ss_pred cceEEEEccCHHHHHHHHHHH-cCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~-~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+.|+.|+|.|.+||.++.--+ .+.+|+++++=|. +++. -|+. +.+ +.|..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~----------VG~~--------------~~~--v~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDK----------VGTK--------------IGD--VPVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHH----------hCcc--------------cCC--eeeech
Confidence 479999999999998876544 3557999999886 3321 1221 111 233222
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
.+.+.+- ++.++|+++-|.++..+-+-+..-.++|.|.+.--+|
T Consensus 136 d~le~~v-~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 136 DDLEKFV-KKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHHH-HhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 2333221 2347999999999888878888888999987554455
No 82
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.75 E-value=0.096 Score=47.35 Aligned_cols=105 Identities=13% Similarity=0.229 Sum_probs=64.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------ChhhhhhhheeccccccccccceEEeCCCceEECCE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~ 74 (188)
..+|+|-|||.||+.+++.|.+. +.+||+|+|..+ +.+.+.+|++|-..+|... .. ... .+.|-
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga 299 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC
Confidence 36899999999999999999877 599999877543 3444556666533222110 00 000 11121
Q ss_pred EEEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEE
Q 029788 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 75 ~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvi 123 (188)
+ .+ +++++ |. ..+|+.+=|. +..++.+.++.-.+.+|| +|+
T Consensus 300 ~-~i----~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 300 T-FF----AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred E-Ec----CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1 11 23332 64 4789988776 778888888876667786 344
No 83
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=95.71 E-value=0.022 Score=55.19 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=28.8
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCC--------CceEEEEeCC
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~--------~~~vv~Ind~ 36 (188)
+.++|+|.|||.||+.+++.|.++. ++++++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 3589999999999999999986542 4788899764
No 84
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.62 E-value=0.05 Score=49.16 Aligned_cols=112 Identities=14% Similarity=0.226 Sum_probs=64.1
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhhe-eccccccccccceEEeCCC---ceE--ECCE-
Q 029788 4 VKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TLL--FGEK- 74 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll~-ydS~~g~~~~~~v~~~~~~---~l~--i~g~- 74 (188)
.||+|.|. |-||+..++.+.++| .|+++++..- ...+.++...+ |.. .-+...+.. .|. +.+.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~~f~p-------~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVRKFKP-------KLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhcCCC
Confidence 69999999 999999999998776 4999999764 35555444222 111 011110100 000 0110
Q ss_pred -EEEEEee-cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 75 -PVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 75 -~i~v~~~-~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
.+.++.. .+..++- ...++|+|+.+.+.+...+..-.++++| |+|.+.|
T Consensus 130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 1233321 1222221 1126899999998777766666778888 4565554
No 85
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.61 E-value=0.022 Score=44.83 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=27.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+|||+|+|+|||.+++.+..- +++|.+.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecC-CceeEEeccc
Confidence 6899999999999999999877 5898888764
No 86
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.044 Score=44.98 Aligned_cols=98 Identities=30% Similarity=0.314 Sum_probs=56.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhhe--eccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~--ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+++.|+|+|++|+.+++.|.+.+ -+++.|.+ +.+.....++ +|. .. +..++....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~-------~~--------v~gd~t~~~~--- 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT-------HV--------VIGDATDEDV--- 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce-------EE--------EEecCCCHHH---
Confidence 38999999999999999999884 67778865 3443323222 211 00 1111111111
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCH-hhHHHHHh-CCCcEEEEeCCC
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDK-DKAAAHLK-GGAKKVIISAPS 127 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~-~~~~~~l~-aGak~vvis~ps 127 (188)
..+..- ..+|+++-+||..... -.+..+++ -|.++++..+.+
T Consensus 59 --L~~agi--~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 59 --LEEAGI--DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred --HHhcCC--CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 111111 2579999999975433 23334444 588887776654
No 87
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=95.49 E-value=0.011 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC---------CceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~---------~~~vv~Ind~ 36 (188)
|++++|+|.|||.||+.+++.|.++. ++++++|.+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 34689999999999999999986532 4788999765
No 88
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.42 E-value=0.029 Score=49.18 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=53.6
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCCC
Q 029788 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (188)
Q Consensus 6 vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~ 85 (188)
|.|+|+|.+|+.+++.|.+++.++-+.+.+. +.+.+..+.+.- .. ..++. ..+ . ..|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~~-~~-----~~~~~-----~~~-----d---~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEKL-LG-----DRVEA-----VQV-----D---VNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT---TT-----TTEEE-----EE----------TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhhc-cc-----cceeE-----EEE-----e---cCCHH
Confidence 6899999999999999999877733344454 444443443210 00 11111 101 0 11222
Q ss_pred CCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 86 ~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
.+.=--.+.|+|+.|+|.|....-++..+++|+ -.++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 111001267999999999988888888888888 45663
No 89
>PLN02700 homoserine dehydrogenase family protein
Probab=95.41 E-value=0.016 Score=51.22 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=30.4
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC--------CceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~--------~~~vv~Ind~ 36 (188)
|++++|+|.|+|.||+.+++.+.++. ++.|++|.++
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 88899999999999999999876432 3788999885
No 90
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.34 E-value=0.13 Score=46.61 Aligned_cols=103 Identities=16% Similarity=0.315 Sum_probs=64.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------Chhhhhhhheecccc-ccccccceEEeCCCceEECCE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEK 74 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~~-g~~~~~~v~~~~~~~l~i~g~ 74 (188)
.+|+|-|||.||+.+++.|.+. +.++++|+|+.+ |.+.+.+++++-..+ |+.. .+.+ . ..|
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~----~~~~---~-~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK----EYAK---H-SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH----hhhh---c-cCC-
Confidence 6899999999999999999887 599999999852 344554444432211 1111 0000 0 001
Q ss_pred EEEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEE
Q 029788 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 75 ~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvi 123 (188)
.+.. ++++ .|. ..+|+.+=|. +-.++.+.++.-.+.||| +|+
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 0111 1222 375 4799998776 777888888876678886 344
No 91
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.25 E-value=0.13 Score=44.04 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=27.0
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|| +||+|+|+|.+|..+...|.... .+|..++.
T Consensus 1 ~~-mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r 33 (341)
T PRK08229 1 MM-ARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR 33 (341)
T ss_pred CC-ceEEEECCCHHHHHHHHHHHhcC-CcEEEEec
Confidence 55 79999999999999999998774 66666654
No 92
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.21 E-value=0.027 Score=45.45 Aligned_cols=95 Identities=23% Similarity=0.246 Sum_probs=54.9
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCC
Q 029788 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 6 vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
|+|.|+ |.+|+.+++.|... .++|.++.... .+..+.-|+.. | . +.-.++ ..++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~~--~~~~~~~l~~~---g-----~-~vv~~d-------------~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRDP--SSDRAQQLQAL---G-----A-EVVEAD-------------YDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESSS--HHHHHHHHHHT---T-----T-EEEES--------------TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEecc--chhhhhhhhcc---c-----c-eEeecc-------------cCCH
Confidence 789999 99999999999984 69999987642 22222222210 0 0 100011 0122
Q ss_pred CCCCCcCCCccEEEeecCCccC------HhhHHHHHhCCCcEEEEeC
Q 029788 85 EEIPWAETGAEYVVESTGVFTD------KDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~------~~~~~~~l~aGak~vvis~ 125 (188)
+.+.=.-.|+|.||.+++.... ...+.+..++|.|++|.|.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 2222111389999999996522 1334566678999988754
No 93
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.97 E-value=0.16 Score=43.17 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.8
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
||.|.|+ |.||+.+++.|.+++ .+|.++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 8999999 999999999999874 78888865
No 94
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.91 E-value=0.09 Score=45.76 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=54.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEEC-CEEEEEEeecC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFGVRN 83 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~-g~~i~v~~~~~ 83 (188)
+|.|.|+|.||...+..+...+--+|+.+ |. +.+.+....++.. ....++ .+. .. ...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g---------------~~~~~~~~~~-~~--~~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG---------------ADVVVNPSED-DA--GAE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC---------------CeEeecCccc-cH--HHH
Confidence 69999999999988777766654566555 54 4444444333211 011111 111 00 000
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCC
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK 128 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~ 128 (188)
...+..+ .++|+||||+|...+.+.+-..++.|-.-+++.-+..
T Consensus 230 ~~~~t~g-~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 230 ILELTGG-RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred HHHHhCC-CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 0011111 3799999999965544555555555544444544443
No 95
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.91 E-value=0.042 Score=42.40 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=27.3
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|.|.|+ |.+|+.+++.|.+++ .+|.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 689999 999999999999996 999999874
No 96
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.85 E-value=0.2 Score=45.33 Aligned_cols=104 Identities=13% Similarity=0.285 Sum_probs=61.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------Chhhhhhhheeccc-cccccccceEEeCCCceEECC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSV-HGQWKHHELKVKDDKTLLFGE 73 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~-~g~~~~~~v~~~~~~~l~i~g 73 (188)
..||+|-|||.+|+..++.|.+. +.+|++|+|... +++.+.|+.++... +++.. .+.+. . |
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~----~~~~~----~-g 297 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR----EYAEK----Y-G 297 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchh----hhHhh----c-C
Confidence 36899999999999999999887 599999999321 34444444332211 11110 00000 0 1
Q ss_pred EEEEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEEe
Q 029788 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIIS 124 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvis 124 (188)
.... ++++ .|. ..+|+.+=|. +..++.+.++.-...|++ +|+.
T Consensus 298 --a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 298 --CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred --CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 1111 2233 364 4799998777 777888888776555673 4443
No 97
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.78 E-value=0.15 Score=37.42 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=53.5
Q ss_pred eEEEEcc----CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 5 KIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 5 ~vaInG~----GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+|||+|+ ++.|+.+++.|.++ ++++.+||-. ++... | .+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~------------~~~i~------------G-------~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPK------------GGEIL------------G-------IK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTT------------CSEET------------T-------EE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCC------------ceEEC------------c-------EE--ee-
Confidence 7999995 89999999999986 5899999753 12211 1 11 11
Q ss_pred ecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
.+.++.| ..+|+++-+++.....+..+...+.|++.+++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1222222 36899999999888888888888889999888554
No 98
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.77 E-value=0.054 Score=38.35 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=58.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+.|+.|.|+|+.|+.++...+....++++++-|. +++ +. | -.++| ++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~-------------~~---------G--~~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPE-------------KI---------G--KEIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTT-------------TT---------T--SEETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCC-------------cc---------C--cEECC--EEeec--
Confidence 4689999999999988765555557888888775 111 11 1 11233 33331
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
..+++.=. .++|+++-|.+.....+.+...+++|.|.++.-+|
T Consensus 53 ~~~~l~~~-~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 53 SMDELEEF-IEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp SHHHHHHH-CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred cHHHhhhh-hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11111100 13899999999888888888999999998776544
No 99
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.48 E-value=0.11 Score=36.04 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=30.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCC--CceEEEEeCCCCChhhhhhhh
Q 029788 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMF 47 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~--~~~vv~Ind~~~~~~~~a~ll 47 (188)
||||+|+|.+|..+++.+.+++ .-++.-+++. +++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH
Confidence 7999999999999999998773 2566656454 566555554
No 100
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.32 E-value=0.029 Score=42.20 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=27.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+||+|+|+|++|+.+.++|.+. +++|+++...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHT-TSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 37999999999999999999877 4888888654
No 101
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.25 E-value=0.16 Score=43.74 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=24.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
..||+|+|+|.+|..+...+..++-.++ .+-|.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l-~L~Di 37 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDV-VLYDV 37 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeE-EEEEC
Confidence 4799999999999998887776642343 33344
No 102
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.22 E-value=0.13 Score=43.03 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=54.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC----------CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEEC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD----------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~----------~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~ 72 (188)
..||.|+|+|-+|-.+++.|.... .++++-+..-..+...+-.-+-+++.-|+.+ ..+-.+ .--.++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~--ri~~~~ 87 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVLVN--RLNQAM 87 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHHHH--HHHhcc
Confidence 479999999999999999987531 2355444321122222222222233345544 222110 000122
Q ss_pred CEEEEEEeec-CCCCCCCcCCCccEEEeecCCccCHhhHHHHH
Q 029788 73 EKPVTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (188)
Q Consensus 73 g~~i~v~~~~-~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l 114 (188)
+..+....+. +++++ + .+.|+|++|+....++...-..+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 3333333221 22222 2 26899999999888876554333
No 103
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.18 E-value=0.09 Score=40.62 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=24.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.|||++|+|++|+.+++.|... ++++..-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-GYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-TTEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhc-CCeEEeec
Confidence 5999999999999999999887 48876654
No 104
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.14 E-value=0.91 Score=38.96 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=69.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|.|.|.+|...++.+.... .+++++.....+.+.+..+.++ |. . . ++-+.-.+. +
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~~----Ga----~--------~-v~~~~~~~~---~ 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEEL----GA----T--------Y-VNSSKTPVA---E 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHc----CC----E--------E-ecCCccchh---h
Confidence 47999999999999998877764 6777775321123332222111 10 0 0 110000000 0
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCe-EE-eecCccCcCCCCcEEEcCChhhHhHHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM-FV-VGVNEHEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~-~V-~gvN~~~~~~~~~ivs~~sCtT~~la~ 161 (188)
.. .+ .++|+||||+|.....+.+-..++.|-+-+++..++.+.+. +- ..++...+..+..+..+-.++..-+..
T Consensus 233 -~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 308 (355)
T cd08230 233 -VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ 308 (355)
T ss_pred -hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH
Confidence 00 11 26899999999654444555666655543334333321121 10 011122222234566655555555666
Q ss_pred HHHHHHH
Q 029788 162 LAKVIHD 168 (188)
Q Consensus 162 ~lk~l~~ 168 (188)
+++.|.+
T Consensus 309 ~~~~l~~ 315 (355)
T cd08230 309 AVEDLAQ 315 (355)
T ss_pred HHHHHHh
Confidence 7776654
No 105
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.10 E-value=0.16 Score=43.97 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=25.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~ 37 (188)
+.||+|+|+|.+|..++..+..++-.+ +.+-|..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIV 39 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCC
Confidence 368999999999999988777664236 4555653
No 106
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.99 E-value=0.079 Score=45.57 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+|||.+++.+..- +++|.+.+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d~ 176 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYYST 176 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEEECC
Confidence 5899999999999999988766 588877753
No 107
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.94 E-value=0.089 Score=45.35 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+|||.+++.+..- +++|.+.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEECC
Confidence 5899999999999999998766 588887764
No 108
>PRK08507 prephenate dehydrogenase; Validated
Probab=93.74 E-value=0.36 Score=40.35 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCC-ceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDD-VELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~-~~vv~In 34 (188)
||+|+|+|.+|+.+.+.|.+.+. .++...+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 89999999999999999887642 3555543
No 109
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.60 E-value=0.1 Score=45.24 Aligned_cols=102 Identities=21% Similarity=0.365 Sum_probs=56.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhh--hhhhheeccccccccccceEEeCCCceE----ECCEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDY--MTYMFKYDSVHGQWKHHELKVKDDKTLL----FGEKPVT 77 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~--~a~ll~ydS~~g~~~~~~v~~~~~~~l~----i~g~~i~ 77 (188)
.+|||+|||+|||.+.+.+..- ++++.+.+- ....+. .......+|-..-+. .-+.|+ ...+...
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d~-~~~~~~~~~~~~~~~~~Ld~lL~-------~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYDP-YSPRERAGVDGVVGVDSLDELLA-------EADILTLHLPLTPETRG 213 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEECC-CCchhhhccccceecccHHHHHh-------hCCEEEEcCCCCcchhc
Confidence 5899999999999999988877 588877754 212210 000111111100000 011121 2223333
Q ss_pred EEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCC
Q 029788 78 VFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGA 118 (188)
Q Consensus 78 v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGa 118 (188)
+...+..+.++ .|+ +.+-|. |.-+..+..-.+++.|.
T Consensus 214 ~i~~~~~a~MK---~ga-ilIN~aRG~vVde~aL~~AL~~G~ 251 (324)
T COG0111 214 LINAEELAKMK---PGA-ILINAARGGVVDEDALLAALDSGK 251 (324)
T ss_pred ccCHHHHhhCC---CCe-EEEECCCcceecHHHHHHHHHcCC
Confidence 33333344443 355 777877 77777777778888774
No 110
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.53 E-value=0.19 Score=41.04 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=26.6
Q ss_pred CC-cceEEEEccCHHHHHHHHHHHcCC--Cce-EEEEeC
Q 029788 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVE-LVAVND 35 (188)
Q Consensus 1 m~-~~~vaInG~GrIGr~~lr~l~~~~--~~~-vv~Ind 35 (188)
|| .+||+|+|+|++|+.+++.+..++ .++ ++..++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 54 689999999999999999887653 344 555554
No 111
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.53 E-value=0.11 Score=44.80 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=25.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|+|||.+++.+..- +++|.+.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 5899999999999999988766 58887765
No 112
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.21 E-value=1.5 Score=37.03 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=64.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
++.|+|.|.||...++.+...+ .+.+.+.+. +.+.+....+ ...++ +
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~--~~~rl~~a~~-------------------~~~i~-----------~ 193 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET--NPRRRDGATG-------------------YEVLD-----------P 193 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC--CHHHHHhhhh-------------------ccccC-----------h
Confidence 6899999999999998777664 654444443 2222111000 00011 0
Q ss_pred CCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CcCCCCcEEEcCChhhHhHHHHH
Q 029788 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEH-EYKPELNIVSNASCTTNCLAPLA 163 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~-~~~~~~~ivs~~sCtT~~la~~l 163 (188)
.+- ...++|+||||+|...+.+.+-..++.|.+-+++..+.. |+ .+|.. .+.....++.+...+..-+..++
T Consensus 194 ~~~--~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 266 (308)
T TIGR01202 194 EKD--PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE--PV---NFDFVPAFMKEARLRIAAEWQPGDLHAVR 266 (308)
T ss_pred hhc--cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC--Cc---ccccchhhhcceEEEEecccchhHHHHHH
Confidence 000 123689999999975444555555655554333333321 21 12221 12223355655555555567777
Q ss_pred HHHHH
Q 029788 164 KVIHD 168 (188)
Q Consensus 164 k~l~~ 168 (188)
+.+.+
T Consensus 267 ~l~~~ 271 (308)
T TIGR01202 267 ELIES 271 (308)
T ss_pred HHHHc
Confidence 77754
No 113
>PLN02928 oxidoreductase family protein
Probab=93.16 E-value=0.13 Score=44.93 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+|||.+++.+... +++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEECC
Confidence 5899999999999999999876 588888754
No 114
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.12 E-value=0.29 Score=37.11 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=45.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCc-eEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~-~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||+|+|+ |.+|..++-.|..++-. |++-+ |.. . ..+.-...|-.|..+. .+..+.+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~-D~~--~-~~~~g~a~Dl~~~~~~--------------~~~~~~i~~- 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLI-DIN--E-DKAEGEALDLSHASAP--------------LPSPVRITS- 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEE-ESS--H-HHHHHHHHHHHHHHHG--------------STEEEEEEE-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEe-ccC--c-ccceeeehhhhhhhhh--------------ccccccccc-
Confidence 49999999 99999999888877532 44444 332 1 1222222232222111 112334433
Q ss_pred cCCCCCCCcCCCccEEEeecCCcc
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFT 105 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~ 105 (188)
.+.+.+. ++|+|+-+.|.-.
T Consensus 62 ~~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 62 GDYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SSGGGGT----TESEEEETTSTSS
T ss_pred ccccccc----cccEEEEeccccc
Confidence 4555553 7999999988743
No 115
>PRK07574 formate dehydrogenase; Provisional
Probab=93.07 E-value=0.14 Score=45.55 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=26.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+|||.+++.|... ++++.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECC
Confidence 5899999999999999998876 588877754
No 116
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.01 E-value=0.66 Score=39.97 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCc-eEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~-~vv~I 33 (188)
..||+|+|+|.||..++-.|..++-. +++-+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~ 37 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVII 37 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 37999999999999999888877643 44433
No 117
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=92.93 E-value=0.75 Score=40.02 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=34.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheec
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD 50 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~yd 50 (188)
..+|-|-|+ |-||..+++.|+.++ ..|.+--....+.+...||.+.+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcc
Confidence 368999999 999999999999996 44555444334666666776654
No 118
>PLN02256 arogenate dehydrogenase
Probab=92.89 E-value=0.2 Score=43.02 Aligned_cols=34 Identities=32% Similarity=0.676 Sum_probs=28.0
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
+++||+|+|+|.+|+.+++.+.+.+ .++.+++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECc
Confidence 4579999999999999999988764 788777653
No 119
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.88 E-value=0.17 Score=38.04 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc-eEEEE
Q 029788 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~-~vv~I 33 (188)
||.|+|+|.+|..+++.|...+ + +++-+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~iv 29 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLI 29 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEE
Confidence 6899999999999999998764 4 34444
No 120
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.86 E-value=0.22 Score=40.09 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=27.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.++++|.|||++|+.+.+.|.+. +.+|+ +.|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~-G~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE-GAKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcC
Confidence 36899999999999999999887 47888 5565
No 121
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.83 E-value=0.27 Score=41.78 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=24.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
+||+|+|+|.+|..++..+...+-.+++-+ |.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~-D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF-DI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE-EC
Confidence 699999999999999988876641265554 44
No 122
>PRK06436 glycerate dehydrogenase; Provisional
Probab=92.82 E-value=0.16 Score=43.56 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=26.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+||+.+++.+..- ++++.+.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEECC
Confidence 6899999999999999987655 588888764
No 123
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.82 E-value=0.15 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=26.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.++||+|+||||+.++|.+..- +++|..-+..
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~~~ 178 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYDRS 178 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEECCC
Confidence 6899999999999999998855 5787766543
No 124
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.70 E-value=0.18 Score=41.83 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~ 25 (188)
|| +||+|+|+|.+|..+++.+.+.
T Consensus 1 ~m-m~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MM-KKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CC-CEEEEEechHHHHHHHHHHHhC
Confidence 54 7999999999999999988765
No 125
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.68 E-value=0.6 Score=41.14 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.3
Q ss_pred ceEEEEc-cCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG-~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+| +|.+|+.+.+.+.... .++...+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 6899999 8999999999998774 6554443
No 126
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.66 E-value=0.17 Score=43.91 Aligned_cols=30 Identities=40% Similarity=0.575 Sum_probs=25.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|+||+.+++.+... +++|.+.+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~~d 180 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRILYYS 180 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999999866 48887664
No 127
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.62 E-value=0.18 Score=43.65 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.0
Q ss_pred ceEEEEccCHHHHHHHHHHH-cCCCceEEEE
Q 029788 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~-~~~~~~vv~I 33 (188)
.++||+|+|+|||.+.+.+. .- +++|++-
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~ 175 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYN 175 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEEE
Confidence 68999999999999999886 55 4777654
No 128
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.57 E-value=0.18 Score=45.10 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|+|||.+++.+..- ++++.+.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999998876 58887765
No 129
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.49 E-value=0.2 Score=42.18 Aligned_cols=32 Identities=28% Similarity=0.593 Sum_probs=26.0
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|+ +||||+|+|.+|+.+++.+... ++++...+
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~-g~~v~~~d 32 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKA-GYSLVVYD 32 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHC-CCeEEEEc
Confidence 54 6999999999999999988876 47776543
No 130
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.48 E-value=0.33 Score=40.26 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=26.1
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
+|.|.|+ |.||+.+++.|.++ +.++.++...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCC
Confidence 5889999 99999999999887 4788787653
No 131
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.36 E-value=0.22 Score=43.21 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+||+.+++.|... +++|++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d~ 177 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYDA 177 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeC
Confidence 5899999999999999998876 588877753
No 132
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.25 E-value=0.65 Score=37.94 Aligned_cols=92 Identities=21% Similarity=0.133 Sum_probs=52.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
++++|.|.|.||..+.+.+... +.|++-.+.- +++..+-+.+|- +. . +.- ...
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a-g~eV~igs~r--~~~~~~a~a~~l---------------~~-~------i~~--~~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA-GHEVIIGSSR--GPKALAAAAAAL---------------GP-L------ITG--GSN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC-CCeEEEecCC--ChhHHHHHHHhh---------------cc-c------ccc--CCh
Confidence 5999999999999999988866 4776655432 344443333221 10 0 111 111
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
++.. ...|+||-+.+-.--..-.+.+.+.=..|+|||..
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 2222 25789998887554444444443321257888654
No 133
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.24 E-value=0.21 Score=40.29 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.9
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||||+|+ |++|..+++-+..| +-|+++|..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEe
Confidence 49999999 99999999999988 489999976
No 134
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.22 E-value=0.23 Score=42.79 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|.||+.+++.|... ++++.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 5899999999999999999876 588877764
No 135
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=92.09 E-value=0.32 Score=36.74 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=32.7
Q ss_pred EEEEcc-CHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhh
Q 029788 6 IGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMF 47 (188)
Q Consensus 6 vaInG~-GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll 47 (188)
|+|.|. |-||++.++.+.++| .|+++++.. ..+.+.+....
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~ 43 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQA 43 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHH
Confidence 689999 999999999999887 699999986 34555554443
No 136
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.01 E-value=1.6 Score=36.27 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=71.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|.|.|.+|...++.+... +.+ ++++ +. +.+.+..+.++ |. ...++.+.. . .
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~-~~--~~~r~~~a~~~----Ga------------~~~i~~~~~---~-~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA-GAARVVAA-DP--SPDRRELALSF----GA------------TALAEPEVL---A-E 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEE-CC--CHHHHHHHHHc----CC------------cEecCchhh---H-H
Confidence 3789999999999998887766 465 6555 43 23333222221 10 011111000 0 0
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCc-CCCCcEEEcCChhhHhHHH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEY-KPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~-~~~~~ivs~~sCtT~~la~ 161 (188)
...++.. ..++|+||||+|.-.+.+.+-..++.|.+.+++.......+ ..+|...+ ..+..++..-..+...+..
T Consensus 178 ~~~~~~~-~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~ 253 (280)
T TIGR03366 178 RQGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQ 253 (280)
T ss_pred HHHHHhC-CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCc---eeeCHHHHHhCCcEEEecCCCCHHHHHH
Confidence 0000111 13699999999876555556666766654444443322222 12333322 2244566655555556777
Q ss_pred HHHHHHH
Q 029788 162 LAKVIHD 168 (188)
Q Consensus 162 ~lk~l~~ 168 (188)
+++.|.+
T Consensus 254 ~~~~l~~ 260 (280)
T TIGR03366 254 AVRFLAA 260 (280)
T ss_pred HHHHHHh
Confidence 7777765
No 137
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.81 E-value=1.7 Score=37.11 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=50.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|+..++.+.... . +++++.. +.+.+..+.++ |. . ..++-+.-.+ .+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~l----Ga----~--------~vi~~~~~~~-~~- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLAREM----GA----D--------KLVNPQNDDL-DH- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHHc----CC----c--------EEecCCcccH-HH-
Confidence 37999999999999998887764 5 4545432 23333333321 21 0 1111100000 00
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
... .. .++|+||||+|.-.+.+.+-..++.|-+-+.+
T Consensus 229 -~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 229 -YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 000 01 15899999999754445566677666543333
No 138
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.78 E-value=0.25 Score=43.79 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=25.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|.||+.+.+.+..- ++++.+.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~-G~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL-GIKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999999876 58887664
No 139
>PLN03139 formate dehydrogenase; Provisional
Probab=91.73 E-value=0.24 Score=44.02 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=25.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|+||+.+++.+..- ++++.+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~d 229 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYHD 229 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999999865 58887654
No 140
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=91.59 E-value=1.1 Score=36.12 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=28.6
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
|.++..-|+|+ |..|+.+++.+.+.|.| ++++|..
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 44578899999 99999999999999876 5556654
No 141
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=91.58 E-value=0.24 Score=41.89 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=29.6
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC--------CceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~--------~~~vv~Ind~ 36 (188)
|+.++|+++|.|-|||.+++.+.... .+.+|++++.
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 67799999999999999998775321 3789999875
No 142
>PLN00016 RNA-binding protein; Provisional
Probab=91.17 E-value=0.68 Score=40.35 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=28.1
Q ss_pred cceEEEE----cc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGIN----GF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaIn----G~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
+.||.|. |. |.||+.+++.|.+++ .+|.++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 3689999 98 999999999999874 788888754
No 143
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.06 E-value=0.36 Score=43.13 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=29.3
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|.++||+|+|.|.+|..+...|.++ ++++++++-
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASR-QKQVIGVDI 34 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhC-CCEEEEEeC
Confidence 7678999999999999999999887 488887753
No 144
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.99 E-value=0.37 Score=41.98 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+|||+|+|++|+.+++.|... +++|+.-+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 6899999999999999999887 5888776654
No 145
>PLN02306 hydroxypyruvate reductase
Probab=90.86 E-value=0.36 Score=42.86 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=24.6
Q ss_pred ceEEEEccCHHHHHHHHHHH-cCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~-~~~~~~vv~In 34 (188)
.+|||+|+|+||+.+++.+. .- +++|.+.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d 196 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD 196 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEEC
Confidence 68999999999999999875 44 57877664
No 146
>PLN02602 lactate dehydrogenase
Probab=90.79 E-value=0.43 Score=41.88 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=20.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
.||+|+|+|.||..++-.|..++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~ 60 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD 60 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 59999999999999998887665
No 147
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.70 E-value=0.35 Score=42.26 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=31.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC--CceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~--~~~vv~Ind~ 36 (188)
.+|.||.|+|+|+|.++++|..-| +.+|++|.++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~ 41 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP 41 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc
Confidence 589999999999999999998776 7999999998
No 148
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.57 E-value=0.73 Score=39.88 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
+.||+|+|+ |.||..++..|..+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 579999999 999999988887654
No 149
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.53 E-value=0.2 Score=40.77 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=20.9
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|+|+|-+|-.+++.|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999988664
No 150
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.49 E-value=0.43 Score=41.38 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=24.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|+||+.+++.|...-++++.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 5899999999999999988432257776654
No 151
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.29 E-value=1.4 Score=36.33 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|.|.|-+|..+++.|....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G 34 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG 34 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999998664
No 152
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.23 E-value=0.47 Score=39.87 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||+|+|+|.+|+.+.+.|... +.+|..++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d 30 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVS 30 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999999877 47776665
No 153
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.15 E-value=0.45 Score=42.26 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=25.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|.||+.+.+.+..- ++++.+.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999999876 58876653
No 154
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.09 E-value=1.2 Score=38.54 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=19.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
+||+|+|+|.||+.++-.|..+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999998886554
No 155
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.00 E-value=0.54 Score=40.52 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=23.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCc-eEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~-~vv~I 33 (188)
..||+|+|+|.||..++-.|..++-. +++-+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 46999999999999998888766532 44434
No 156
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.90 E-value=0.55 Score=39.35 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=26.9
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|.+.||+|+|+|.+|..++..+..+. .+++.+.
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~d 33 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMVD 33 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCC-CceEEEe
Confidence 54468999999999999999988774 6776663
No 157
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=89.81 E-value=0.82 Score=39.21 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=24.8
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCC-ceEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVN 34 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~-~~vv~In 34 (188)
+||+|.|+ |.+|..++..+...+- .+++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 48999999 9999999999887753 2566654
No 158
>PLN02712 arogenate dehydrogenase
Probab=89.80 E-value=0.52 Score=44.80 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=27.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
++||||+|+|+||+.+++.+.+. +.+|++.+..
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~-G~~V~~~dr~ 401 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQ-GHTVLAYSRS 401 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHC-cCEEEEEECC
Confidence 47999999999999999999876 4788877653
No 159
>PLN02712 arogenate dehydrogenase
Probab=89.78 E-value=0.52 Score=44.81 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=27.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++||||+|+|++|+.+++.+... +++|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ-GHTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46999999999999999999877 478877764
No 160
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.49 E-value=0.63 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.3
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC---CceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD---DVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~---~~~vv~In 34 (188)
|..+||+++|+|.+|+.+++.|.+++ ..++...+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 65679999999999999999998763 14454443
No 161
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.47 E-value=0.51 Score=43.49 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998866 47887775
No 162
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=89.38 E-value=1.8 Score=39.02 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=54.8
Q ss_pred cceEEEEcc----CHHHHHHHHHHHcCCCc--eEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEE
Q 029788 3 KVKIGINGF----GRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (188)
Q Consensus 3 ~~~vaInG~----GrIGr~~lr~l~~~~~~--~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i 76 (188)
+.+|+|+|+ |.+|+.+++.+.+.+ | ++.+||-. ++..+|.
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~i~G~--------------------- 52 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGEILGV--------------------- 52 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCccCCc---------------------
Confidence 468999999 789999999998774 5 67777742 1221111
Q ss_pred EEEeecCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 77 ~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
+++ .+.+++| ..+|+++-+++.....+..+...+.|+|.++|
T Consensus 53 ~~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 53 KAY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred ccc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 111 1233343 25788888888777777777777788887765
No 163
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.37 E-value=0.52 Score=43.46 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=26.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|+||+.+++.+... ++++.+.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~ 171 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYDP 171 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECC
Confidence 5899999999999999998876 588877753
No 164
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.10 E-value=0.75 Score=38.77 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=26.7
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|...||+|+|+|.+|+.++..+..+ +++|+.++
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d 33 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFART-GYDVTIVD 33 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhc-CCeEEEEe
Confidence 4446899999999999999988877 47776664
No 165
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=89.09 E-value=0.67 Score=40.55 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=29.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC-CceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~-~~~vv~Ind~ 36 (188)
++||||+|. ++|+..++++.+.+ ++++++|.|.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~ 36 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ 36 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 589999999 68999999998877 7999999997
No 166
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.06 E-value=2.9 Score=37.96 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=55.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
..||.|.|+|+-|+.++|.|.++. .++ .++|....++.. . ... +... .+.+...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~~-------~--------~~~------~~~~--~i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEGL-------A--------AQP------LLLE--GIEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccch-------h--------hhh------hhcc--CceeecCc
Confidence 369999999999999999999885 555 445532121100 0 000 0000 11111122
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCc
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak 119 (188)
.+. .+|. +.|+|+-+-|...+-...+...++|++
T Consensus 62 ~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 222 4454 689999999999988888888888885
No 167
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.03 E-value=0.76 Score=39.06 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCC-ceEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAV 33 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~-~~vv~I 33 (188)
..||+|+|+|.+|+.+++.+..... .++...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~ 37 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGA 37 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEE
Confidence 4689999999999999998887642 255444
No 168
>PRK05442 malate dehydrogenase; Provisional
Probab=89.01 E-value=0.85 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.7
Q ss_pred CC-cceEEEEcc-CHHHHHHHHHHHcC
Q 029788 1 MG-KVKIGINGF-GRIGRLVARVILQR 25 (188)
Q Consensus 1 m~-~~~vaInG~-GrIGr~~lr~l~~~ 25 (188)
|+ +.||+|+|+ |.||..++-.|..+
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhh
Confidence 53 589999999 99999988777654
No 169
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.97 E-value=0.76 Score=38.90 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=25.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||+|+|+|.+|..+...|.+. +.++..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-GHDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 4899999999999999998876 466655543
No 170
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.84 E-value=0.8 Score=38.64 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCc-ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~-~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|+. .||||+|+|.+|..+++.+... +++|+..+
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d 34 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAA-GMDVWLLD 34 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhc-CCeEEEEe
Confidence 543 6799999999999999998877 47776664
No 171
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.82 E-value=0.81 Score=38.55 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.7
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
..||+|+|+|.+|..+...+..+ +++|+..+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d 34 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-GYDVLLND 34 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEEEEe
Confidence 47899999999999999988877 47776554
No 172
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=88.36 E-value=0.55 Score=39.07 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.7
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
|..+||+|+|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 55579999999999999999998764
No 173
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.31 E-value=0.67 Score=36.83 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=23.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|||+|.|.|.+|..++-.+.+. +++++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-GHQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-TSEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhC-CCEEEEEe
Confidence 4999999999999988888877 58888883
No 174
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.14 E-value=0.86 Score=38.86 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=25.5
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++||+|+|+|.||..+...|.+.. .++..+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r 36 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLR 36 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEe
Confidence 4579999999999999998887653 55555543
No 175
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=88.13 E-value=0.94 Score=37.69 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=71.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------Chhhhhhhheecccccc-ccccceEEeCCCceEECC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~~g~-~~~~~v~~~~~~~l~i~g 73 (188)
..+++|-|||.+|+.+++.|.+. ...+++|.|..+ +.+.+..+. +. +|. +. .. ... .-++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~----~~-~~~--~~~~ 100 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVD----DY-PLE--SPDG 100 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHST----TG-THT--CSST
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccc----cc-ccc--cccc
Confidence 46899999999999999999988 599999977531 233222221 11 111 11 00 000 0000
Q ss_pred EEEEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcC
Q 029788 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNA 152 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~ 152 (188)
...... .+++ |. ..+|+.+=|. +.-++.+.++..++.||| +|+-+. +-|+- ++-.. .|. ++.|+-.|
T Consensus 101 --~~~~~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIvegA--N~p~t-~~a~~-~L~-~rGI~viP 168 (244)
T PF00208_consen 101 --AEYIPN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEGA--NGPLT-PEADE-ILR-ERGILVIP 168 (244)
T ss_dssp --SEEECH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEESS--SSSBS-HHHHH-HHH-HTT-EEE-
T ss_pred --eeEecc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeCc--chhcc-HHHHH-HHH-HCCCEEEc
Confidence 011111 1122 43 4799999998 777777777766778887 455332 23321 22211 222 34566666
Q ss_pred ChhhHhHHHH
Q 029788 153 SCTTNCLAPL 162 (188)
Q Consensus 153 sCtT~~la~~ 162 (188)
.=.+|+=..+
T Consensus 169 D~~aNaGGvi 178 (244)
T PF00208_consen 169 DFLANAGGVI 178 (244)
T ss_dssp HHHHTTHHHH
T ss_pred chhhcCCCeE
Confidence 6666654443
No 176
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=88.00 E-value=0.42 Score=41.73 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcC
Q 029788 4 VKIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~ 25 (188)
.+|+|+|+|+||+.+++.|..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 5899999999999999887653
No 177
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.87 E-value=0.87 Score=38.64 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=25.2
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|||++|+|.+|+.+++.|.+. +++++..+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVGYDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEEEEC
Confidence 899999999999999999877 477766543
No 178
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.74 E-value=1 Score=38.63 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++||+|+|+|.+|..+...|... +.+|...+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r 35 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-GVPVRLWAR 35 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEeC
Confidence 36999999999999999998876 467666654
No 179
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=87.72 E-value=5.6 Score=35.72 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~ 38 (188)
.||+|-|||.+|+.+++.|.+. .-+||++.|...
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g 241 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKG 241 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 6899999999999999998766 689999999754
No 180
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.63 E-value=1 Score=35.56 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=69.8
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhhe-------eccccccccccceEEeCCCceEECCEEEE
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-------YDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~-------ydS~~g~~~~~~v~~~~~~~l~i~g~~i~ 77 (188)
||||+|+|.+|+.+...+... +++++-+ |. +++.+....+ ..--.|++. .. .. .. . .+ .++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~-d~--~~~~l~~~~~~i~~~l~~~~~~~~~~-~~-~~-~~--~-~~--~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLY-DR--SPEALERARKRIERLLDRLVRKGRLS-QE-EA-DA--A-LA--RIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE--S--SHHHHHHHHHHHHHHHHHHHHTTTTT-HH-HH-HH--H-HH--TEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEE-EC--ChHHHHhhhhHHHHHHhhhhhhccch-hh-hh-hh--h-hh--hcc
Confidence 799999999999999888877 5877555 43 3333222211 111112211 00 00 00 0 11 233
Q ss_pred EEeecCCCCCCCcCCCccEEEeecCCccCHh-hHHHHHhC--CCcEEEEeCCCC----------CCC--eEE-eecCccC
Q 029788 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKD-KAAAHLKG--GAKKVIISAPSK----------DAP--MFV-VGVNEHE 141 (188)
Q Consensus 78 v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~-~~~~~l~a--Gak~vvis~ps~----------d~p--~~V-~gvN~~~ 141 (188)
+. .+.+... ++|+|+||...-...+ ..-..++. ....++.|+.|. .-| ++. --.|+-.
T Consensus 69 ~~--~dl~~~~----~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~ 142 (180)
T PF02737_consen 69 FT--TDLEEAV----DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPH 142 (180)
T ss_dssp EE--SSGGGGC----TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTT
T ss_pred cc--cCHHHHh----hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccc
Confidence 32 3455442 7999999996544332 12233332 334477788762 123 222 2234333
Q ss_pred cCCCCcEEEcCChhhHhHHHHHHHHHHhcCce
Q 029788 142 YKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (188)
Q Consensus 142 ~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI~ 173 (188)
..+--.||..+...-..+.-+...+.+ .|-.
T Consensus 143 ~~~lVEvv~~~~T~~~~~~~~~~~~~~-~gk~ 173 (180)
T PF02737_consen 143 LMPLVEVVPGPKTSPETVDRVRALLRS-LGKT 173 (180)
T ss_dssp T--EEEEEE-TTS-HHHHHHHHHHHHH-TT-E
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHH-CCCE
Confidence 322236888888766666666666554 4543
No 181
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.58 E-value=0.92 Score=38.59 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+++|.|+|++|+.+++.|.... .++...+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeC
Confidence 58999999999999999998875 67766654
No 182
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=87.43 E-value=0.91 Score=40.38 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=33.0
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhh
Q 029788 4 VKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYM 46 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~l 46 (188)
.||+|.|. |-||+..++.+..+| .|+++++..- ...+.+...
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q 45 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQ 45 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHH
Confidence 59999999 999999999988765 5999999763 355544443
No 183
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=87.39 E-value=0.96 Score=38.83 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+++-+.|+|.+|+..+|.+..+|.+++|+.-+.
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 4899999999999999999999999999998765
No 184
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=87.35 E-value=4.8 Score=33.66 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=25.9
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|-|-|. |-||+.+++.|.+++ .+|+++..
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEEc
Confidence 57999998 999999999999884 67776653
No 185
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=87.14 E-value=0.3 Score=42.07 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 029788 5 KIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~ 26 (188)
||.|+|+|-+|-.+++.|....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998764
No 186
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.06 E-value=1.1 Score=38.13 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=24.8
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|||++|+|++|+.+++.|.+. +++|+..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-g~~v~v~d 30 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-GHEVVGYD 30 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEE
Confidence 899999999999999999876 47777554
No 187
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.00 E-value=10 Score=30.39 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|-|+|.|.+|...++.|.+.+ -+++-|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 68999999999999999998875 6666665
No 188
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.87 E-value=2.8 Score=39.22 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.0
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|.|.|+ |.||+.+++.|.++ +.+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeC
Confidence 46899999 99999999999887 478777754
No 189
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.80 E-value=0.52 Score=38.51 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=24.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..||.|+|+|.+|..+++.|.... +.-+.+-|
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD 52 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD 52 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 468999999999999999998664 43334444
No 190
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.62 E-value=4.9 Score=36.57 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=49.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.||.|.|+|+.|+..++.|..+. .+++. .|. ..+....+.+ .|-.+ +.+ ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~--~~~~~~~l~~----------------~g~~~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD--DPDALRPHAE----------------RGVAT-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC--CHHHHHHHHh----------------CCCEE-EcC-------cch
Confidence 58999999999999999888774 66544 664 2222222111 01001 100 111
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCC
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGa 118 (188)
++.+. +.|+||.+.|.-.+........+.|.
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22232 47999999998766665656666666
No 191
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=86.60 E-value=2.1 Score=32.81 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=53.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
||+|.|.|..|..+...|.++. .+|. +-.. +.+.+..+-+... ..++- .+..+.- .+.+. .|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~-l~~~--~~~~~~~i~~~~~-n~~~~-------~~~~l~~---~i~~t--~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVT-LWGR--DEEQIEEINETRQ-NPKYL-------PGIKLPE---NIKAT--TDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEE-EETS--CHHHHHHHHHHTS-ETTTS-------TTSBEET---TEEEE--SSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEE-EEec--cHHHHHHHHHhCC-CCCCC-------CCcccCc---ccccc--cCH
Confidence 7999999999999999888875 5443 3332 4455444443211 00111 1111211 23332 355
Q ss_pred CCCCCcCCCccEEEeecCCccCHhhHH---HHHhCCCcEEEEeCC
Q 029788 85 EEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAP 126 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~---~~l~aGak~vvis~p 126 (188)
++.- .+.|+++-+++.+.-++.++ .|++.+. .+|+.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 4321 26899999999887765554 4444555 666665
No 192
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.54 E-value=1.6 Score=35.98 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=23.7
Q ss_pred eEEEEccCHHHHHHHHHHHcCC-CceEEEEeCC
Q 029788 5 KIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~-~~~vv~Ind~ 36 (188)
||||+|+|++|+.+++.|...+ ..+.+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 8999999999999999988653 1222345554
No 193
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.51 E-value=1.2 Score=37.92 Aligned_cols=29 Identities=28% Similarity=0.625 Sum_probs=24.8
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||||+|+|++|..+.+.|.++ +++|+..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~~d 30 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVGYD 30 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999998876 47876654
No 194
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.48 E-value=2.5 Score=35.82 Aligned_cols=137 Identities=12% Similarity=0.179 Sum_probs=68.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|..+++.+.... .+ ++++.. +.+.+..+.++ |. . ..++.+.-.. +
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~---~~~~~~~~~~~----ga-~-----------~~i~~~~~~~--~- 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG-AEDVIGVDP---SPERLELAKAL----GA-D-----------FVINSGQDDV--Q- 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEECC---CHHHHHHHHHh----CC-C-----------EEEcCCcchH--H-
Confidence 47999999999999988877664 66 666643 23333232221 10 0 1111100000 0
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcCChhhHhHHHH
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~~ 162 (188)
...++. ...++|+||||+|.....+.+-..++.+.+.+++..++ + +.+.+ ....+..+..++..-.++...+.-+
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~~ 296 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG-E-LTIEV--SNDLIRKQRTLIGSWYFSVPDMEEC 296 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC-C-cccCc--HHHHHhCCCEEEEEecCCHHHHHHH
Confidence 000010 11269999999997654455556676666444444332 2 11110 0112222344555444455567777
Q ss_pred HHHHHH
Q 029788 163 AKVIHD 168 (188)
Q Consensus 163 lk~l~~ 168 (188)
++.+.+
T Consensus 297 ~~~~~~ 302 (339)
T cd08239 297 AEFLAR 302 (339)
T ss_pred HHHHHc
Confidence 777765
No 195
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.48 E-value=0.4 Score=39.82 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|+|+|-+|..+++.|...+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 368999999999999999988664
No 196
>PLN02688 pyrroline-5-carboxylate reductase
Probab=86.46 E-value=1.8 Score=35.78 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=25.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCC---ceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~---~~vv~Ind~ 36 (188)
+||+++|+|.+|..+++.|.+.+. .+++..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 379999999999999999987642 266655354
No 197
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.44 E-value=5.4 Score=34.12 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred ceEEEEccCHHHHHHHHHHHc-CCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~-~~~~~vv~In 34 (188)
-+|.|.|+|.||...++.+.. ....+++++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 379999999999988776653 3334555553
No 198
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.42 E-value=0.62 Score=36.59 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCce
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVE 29 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~ 29 (188)
||+|+|+|-+|..+++.|.... +.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg 24 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VG 24 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CC
Confidence 6899999999999999888664 53
No 199
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.26 E-value=0.95 Score=38.07 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=24.7
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||||+|+|.+|+.+.+.+.+. +++|+..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~~~d 29 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLHVTT 29 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEEEEc
Confidence 699999999999999999877 47877664
No 200
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.22 E-value=2.3 Score=36.79 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=52.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|...++.+... +. +++++.. +.+.+..+.++ |. . -.++.+.-... +
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~---~~~r~~~a~~~----Ga-~-----------~~i~~~~~~~~--~ 250 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA-GASQVVAVDL---NEDKLALAREL----GA-T-----------ATVNAGDPNAV--E 250 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcC---CHHHHHHHHHc----CC-c-----------eEeCCCchhHH--H
Confidence 3699999999999998887766 45 4655532 33433333221 11 0 11111000000 0
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
...++. ..++|+||||+|.-.+.+.+-..++.|-+-+.+..+
T Consensus 251 ~i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 251 QVRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred HHHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 000111 126899999998655555556667666544444433
No 201
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.95 E-value=4.8 Score=36.22 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=25.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|.|+|.|.+|..+++.|.++. .+++.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999998874 7776654
No 202
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=85.79 E-value=1.5 Score=37.56 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=27.4
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||-|-|. |.||+.+++.|.++.+.+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 48999999 999999999998764578888864
No 203
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.76 E-value=5.2 Score=35.57 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=25.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
..++.|.|.|++|+.+++.|.++. .+|+.+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~ 34 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVILT 34 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 468999999999999999999885 676554
No 204
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.73 E-value=1.8 Score=30.83 Aligned_cols=29 Identities=31% Similarity=0.673 Sum_probs=23.7
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 6 IGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 6 vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|-|.|+|++|+.+++.|.++ +.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 46899999999999999985 578888865
No 205
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.68 E-value=0.44 Score=39.49 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.9
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|+|.|-+|..+++.|....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 368999999999999999998664
No 206
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.67 E-value=1.6 Score=36.75 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.8
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|...||+|+|+|.+|+.++..+... +.+|+.+.
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~-G~~V~l~d 33 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFH-GFDVTIYD 33 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhc-CCeEEEEe
Confidence 4446899999999999999888766 46665554
No 207
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.57 E-value=1.6 Score=36.75 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=25.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCC---ceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~---~~vv~Ind 35 (188)
.||+|+|+|.+|+.+++.+.+.+. .+++.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 489999999999999999886642 45666654
No 208
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.53 E-value=1.5 Score=37.30 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.3
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCC
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
++.+|+|.|+|.||+.+.|.+.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3579999999999999999998775
No 209
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.35 E-value=1.8 Score=36.36 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
.+||+++|+|.+|..+++.|.+++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g 25 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKN 25 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCC
Confidence 369999999999999999998764
No 210
>PRK08219 short chain dehydrogenase; Provisional
Probab=85.25 E-value=1.5 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.1
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
||+.++-|.|. |.+|+.+++.|.++ .+++.+..
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 55578999999 99999999998876 66777754
No 211
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.18 E-value=1.7 Score=36.83 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=25.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+|+|.+|..++..+... +++|+.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 5899999999999999988876 47776664
No 212
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.16 E-value=1.5 Score=38.19 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.9
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..+|||+|+|.+|+.+++.|.+.. ++++....
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 368999999999999999998774 77665443
No 213
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=85.16 E-value=3.7 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=25.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.|+.|+|+|-+|+.+++.|.+++--++.-+|.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 57999999999999999999885344444454
No 214
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.04 E-value=2.5 Score=37.18 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=51.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEE-EEEeec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV-TVFGVR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i-~v~~~~ 82 (188)
-.|+|.|.|-||-..+..+..-.--.|++| |+ .++.+....++.-|| .+|.+.. .+.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~--~~~Kl~~A~~fGAT~----------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DI--NPEKLELAKKFGATH----------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEE-eC--CHHHHHHHHhcCCce----------------eecchhhhhHHH--
Confidence 369999999999988887776555677787 33 344443443332221 1232222 1110
Q ss_pred CCCCCCCcCCCccEEEeecCCccCHhhHHHHHhC
Q 029788 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG 116 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~a 116 (188)
-..++ | +.|+|++|||+|.-...+.+-.....
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~ 277 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEATHR 277 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhc
Confidence 01111 2 23899999999987766555444433
No 215
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=84.90 E-value=1.4 Score=38.92 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=33.0
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCC-ceEEEEeCCCCChhhhhh
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTY 45 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~-~~vv~Ind~~~~~~~~a~ 45 (188)
.|+.|.|. |-||...|+.+.++|+ |+++++..- ...+.++-
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~~ 44 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLAE 44 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHHH
Confidence 59999999 9999999999998874 999999864 24554433
No 216
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.82 E-value=22 Score=29.68 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=68.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|.|.|.+|+.+++.+... +++++.+.+. .+....+-++ | . . ..++. +.
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~---~~~~~~~~~~----g-----~-~------~~~~~--------~~ 220 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ-GAEVFAFTRS---GEHQELAREL----G-----A-D------WAGDS--------DD 220 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCC---hHHHHHHHHh----C-----C-c------EEecc--------Cc
Confidence 3688999999999998877766 4888777654 1222222111 1 0 0 11110 00
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCcCCCCcEEEcCChhhHhHHHHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLA 163 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~~~~~~~ivs~~sCtT~~la~~l 163 (188)
+ .+.++|+++++++.....+.+..+++.+...+.+...... ++.++...+.....+...+.-....+..++
T Consensus 221 ~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (329)
T cd08298 221 L-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSD----IPAFDYELLWGEKTIRSVANLTRQDGEEFL 291 (329)
T ss_pred c-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCC----CCccchhhhhCceEEEEecCCCHHHHHHHH
Confidence 1 1136899999987666667777888776644433211111 122332222223345444444555666666
Q ss_pred HHHHH
Q 029788 164 KVIHD 168 (188)
Q Consensus 164 k~l~~ 168 (188)
+.+.+
T Consensus 292 ~l~~~ 296 (329)
T cd08298 292 KLAAE 296 (329)
T ss_pred HHHHc
Confidence 65543
No 217
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=84.75 E-value=9.1 Score=31.90 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=50.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|.|.|.+|+.+++.+... +.+++++.. +.+...++.++.. . ..++- .+
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~---~~~~~~~~~~~g~--------~--------~~~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT-GPDVVLVGR---HSEKLALARRLGV--------E--------TVLPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEcC---CHHHHHHHHHcCC--------c--------EEeCc--------cc
Confidence 3789999999999999888777 477766644 2344334433211 0 00110 00
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcE
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~ 120 (188)
. .++ .++|++|+|+|.-...+.+..+++.+.+.
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~~ 241 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGTV 241 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 0 122 36999999998644455566677666543
No 218
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.64 E-value=1.4 Score=37.28 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..+|.|.|.|-+|-.+++.|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 368999999999999999998764
No 219
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=84.54 E-value=1.6 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=24.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+|+|.+|..+.+.|.++. +++...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d 31 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFD 31 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEc
Confidence 48999999999999999998774 6765554
No 220
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.54 E-value=1.7 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=26.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+||+|+|+|.+|+.+.+.|.... .+|...+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~r 35 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVRVWSR 35 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 368999999999999999998774 67765553
No 221
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=84.51 E-value=1.8 Score=37.30 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
..||||+|+|.+|+.+++.|.+.. ++++...+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~~ 35 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLRK 35 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEECc
Confidence 368999999999999999998774 666544443
No 222
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.43 E-value=0.75 Score=36.93 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=24.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
..||.|+|.|.+|..+++.|.... + +++-+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD 52 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVD 52 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEec
Confidence 368999999999999999998764 4 444443
No 223
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.36 E-value=0.98 Score=43.28 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=24.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+|+|.+|.-+...+... +++|+-+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d 343 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVMKD 343 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEEEe
Confidence 4799999999999999888877 58775553
No 224
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=84.28 E-value=1.7 Score=39.80 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=24.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|+|+|+|+|||.+++.+... +.+|+..+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF-GARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999999877 46765553
No 225
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.09 E-value=0.64 Score=44.69 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=28.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhh
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY 45 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ 45 (188)
.||+|+|+|.+|.-+...+... +++|+-+ |. +.+.+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~-d~--~~~~l~~ 373 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLK-DA--TPAGLDR 373 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEe-cC--CHHHHHH
Confidence 5799999999999999888777 5877655 44 4444433
No 226
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.97 E-value=8.3 Score=36.96 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=75.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhhee-------ccccccccccceEEeCCCceEECCEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-------DSVHGQWKHHELKVKDDKTLLFGEKPV 76 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~y-------dS~~g~~~~~~v~~~~~~~l~i~g~~i 76 (188)
.||+|+|+|.+|+.+...+..+.+++|+-. |. +.+.+....++ .-..|++. .. .. .. . . ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~-d~--~~~~l~~~~~~~~~~l~~~~~~~~~~-~~-~~--~~-~-~--~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK-DI--NPQGINHALKYSWDLLDKKVKRRHLK-PS-ER--DK-Q-M--ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCC-HH-HH--HH-H-H--hcE
Confidence 579999999999999888773435777554 44 33333222211 00112211 00 00 00 0 0 133
Q ss_pred EEEeecCCCCCCCcCCCccEEEeecCCccCHh-----hHHHHHhCCCcEEEEeCCCC----------CCCeEEee---cC
Q 029788 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKD-----KAAAHLKGGAKKVIISAPSK----------DAPMFVVG---VN 138 (188)
Q Consensus 77 ~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~-----~~~~~l~aGak~vvis~ps~----------d~p~~V~g---vN 138 (188)
+.. .+.+.+ .++|+|+||.......+ ..+.+...++ ++-||.|. .-|-=+.| .|
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~ 450 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFS 450 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCC
Confidence 333 233333 27999999976544332 2234433334 77777662 12311111 22
Q ss_pred ccCcCCCCcEEEcCChhhHhHHHHHHHHHHhcCceEEE
Q 029788 139 EHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176 (188)
Q Consensus 139 ~~~~~~~~~ivs~~sCtT~~la~~lk~l~~~~gI~~~~ 176 (188)
+-.+-+--.||..+.++-..+.-+...+. ..|..-+.
T Consensus 451 P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~-~~gk~pv~ 487 (708)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALAK-KQGKTPIV 487 (708)
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHH-HcCCceEE
Confidence 22222112477777766666666665554 45654443
No 227
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.73 E-value=8.4 Score=33.30 Aligned_cols=31 Identities=13% Similarity=0.459 Sum_probs=24.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|.|.|.||...++.+... +.+++.+..
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~ 215 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAF-GLKVTVISS 215 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3689999999999998888766 467666644
No 228
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.61 E-value=1.3 Score=38.54 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=24.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..||.|+|.|.+|..+++.|.... +.-+.|-|
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD 55 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-IGKLTIAD 55 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 368999999999999999998764 53334444
No 229
>PRK08818 prephenate dehydrogenase; Provisional
Probab=83.54 E-value=1.9 Score=38.16 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=25.3
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEE
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~I 33 (188)
..||+|+|. |.||+.+.+++.+....+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 579999999 9999999999986545666554
No 230
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.31 E-value=1.8 Score=38.37 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+|.|.|+|++|+.+++.|.++ +.+++.|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~ 31 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDT 31 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEEC
Confidence 899999999999999998876 478887854
No 231
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=83.24 E-value=1.9 Score=37.94 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=23.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..+||+|+||||+.+.+.+..- .+.++.-.+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~-gm~vI~~dp 177 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM-GMHVIGYDP 177 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc-CceEEeecC
Confidence 4699999999999999887755 355544433
No 232
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.23 E-value=3.5 Score=35.66 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
.||+|.|+ |.||..++..|..++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999999 999999998888664
No 233
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.22 E-value=2 Score=36.60 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||+|+|+|.+|..+...+..+ +.+|+..+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeEEEeC
Confidence 4899999999999999998887 477766653
No 234
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=83.16 E-value=1.7 Score=38.54 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=25.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||+|+|+|.+|..+...|.+. +.+|+.++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEE
Confidence 899999999999999998877 47777764
No 235
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=83.08 E-value=2.9 Score=35.37 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=28.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCC---ceEEEEeCCCCChhhhh
Q 029788 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMT 44 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~---~~vv~Ind~~~~~~~~a 44 (188)
+|||++|+|.+|+.+++-|.+++. .+| -+.++ +.+...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I-~v~~~--~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEI-IVTNR--SEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceE-EEeCC--CHHHHH
Confidence 599999999999999999988752 344 45554 445443
No 236
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.93 E-value=2.2 Score=39.99 Aligned_cols=39 Identities=21% Similarity=0.544 Sum_probs=30.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhh
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~l 46 (188)
.+|-|.|+||+||.+.|.|.++ +.+++.|.. |++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4789999999999999999877 478888854 55554444
No 237
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=82.89 E-value=2.1 Score=36.41 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.2
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|||++|.|++|..+.+.|.+.. +++...+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEEe
Confidence 7999999999999999998774 6765443
No 238
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=82.87 E-value=1.3 Score=36.70 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 029788 5 KIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~ 26 (188)
||.|+|+|-+|-.+++.|...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~G 22 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG 22 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999988664
No 239
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.77 E-value=1.8 Score=41.51 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+|+|.+|+-+...+... +++|+-+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEEe
Confidence 4799999999999999887766 57765553
No 240
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.73 E-value=2.3 Score=35.54 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=24.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
||+|+|+|.+|..+...|.+.. .+|+.+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 8999999999999998888663 56666654
No 241
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.70 E-value=17 Score=30.95 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=68.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe-ec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VR 82 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~-~~ 82 (188)
-+|.|.|.|.+|..+++.+.... .+++++.. +.+.+..+.++ |. . ..++-+...... .+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----Ga-~-----------~~i~~~~~~~~~~~~ 227 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDI---DPEKLEMMKGF----GA-D-----------LTLNPKDKSAREVKK 227 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHh----CC-c-----------eEecCccccHHHHHH
Confidence 36999999999999988887774 67766643 33443333221 10 0 111100000000 00
Q ss_pred CCCCCCCcCCCcc----EEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CcCCCCcEEEcCChhhH
Q 029788 83 NPEEIPWAETGAE----YVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEH-EYKPELNIVSNASCTTN 157 (188)
Q Consensus 83 ~p~~~~w~~~~vd----iV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~-~~~~~~~ivs~~sCtT~ 157 (188)
...++ ....++| +||||+|.....+.+-..++.|-+-+.+..++... .++.. .+.....++.+-.|+..
T Consensus 228 ~~~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~ 301 (349)
T TIGR03201 228 LIKAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKT-----EYRLSNLMAFHARALGNWGCPPD 301 (349)
T ss_pred HHHhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCc-----ccCHHHHhhcccEEEEEecCCHH
Confidence 00000 0112454 89999997655555556676665433333332211 11211 12112345555555566
Q ss_pred hHHHHHHHHHH
Q 029788 158 CLAPLAKVIHD 168 (188)
Q Consensus 158 ~la~~lk~l~~ 168 (188)
.+..+++.+.+
T Consensus 302 ~~~~~~~~i~~ 312 (349)
T TIGR03201 302 RYPAALDLVLD 312 (349)
T ss_pred HHHHHHHHHHc
Confidence 67777777764
No 242
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=82.51 E-value=2.3 Score=38.85 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=24.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+||||+|+|.+|+.++..+... +++|+..+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-G~~V~v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-GIDVAVFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEe
Confidence 5899999999999999998877 47765543
No 243
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.30 E-value=1.9 Score=39.11 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.5
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
+..+|+|+|+|..|-..+|.|.++ +++++..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vf 35 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE-GHEVVVF 35 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC-CCCceEE
Confidence 468999999999999999999877 4655554
No 244
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=82.22 E-value=3.6 Score=35.64 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
+.||+|+|+ |.||..++-.|..++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 589999999 999999988887664
No 245
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.21 E-value=2.3 Score=40.03 Aligned_cols=39 Identities=28% Similarity=0.642 Sum_probs=30.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhh
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~l 46 (188)
.+|-|.||||+||.+.|.|.++ +++++.|.. |++..-.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDH---DPDHIETL 439 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4688999999999999999887 478888843 45544333
No 246
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.18 E-value=2.4 Score=37.65 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=27.0
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|+..||.|+|+|.+|+.+++.|.+++ .++++..
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g~D 33 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIGVD 33 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEEEe
Confidence 66679999999999999999998875 5655543
No 247
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.10 E-value=2.5 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=26.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..|+.|+|+|++|+.+++.|...+ .++...+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG-ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 368999999999999999998774 67666654
No 248
>PRK07877 hypothetical protein; Provisional
Probab=81.90 E-value=0.48 Score=45.45 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=55.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCc--eEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEEC-CEEEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVF 79 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~--~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~-g~~i~v~ 79 (188)
..||+|+|+| +|-.++..|.... + ++.-+..-..++..+-..+-..+.-|+.+ -.+- ...-..+| .-+|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K-v~~a--~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNK-AVVA--ARRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHH-HHHH--HHHHHHHCCCCEEEEE
Confidence 3689999999 8999998887653 2 33222211112222222211112234433 1110 00101122 1233333
Q ss_pred eec-CCCCCCCcCCCccEEEeecCCccCHhhHH-HHHhCCCcEEEEeCC
Q 029788 80 GVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (188)
Q Consensus 80 ~~~-~p~~~~w~~~~vdiV~e~tg~~~~~~~~~-~~l~aGak~vvis~p 126 (188)
.+. ++++++=--.++|+|+||+..|.++-... ...+.|. .+|++.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~ 228 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMAT 228 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 321 22332200126899999999997765443 2334444 455554
No 249
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.76 E-value=0.86 Score=36.68 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
..||+|+|+|.+|..++..|... ++.-+.+-|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECC
Confidence 46899999999999999998876 4632344443
No 250
>PRK07680 late competence protein ComER; Validated
Probab=81.59 E-value=3.7 Score=34.18 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=19.9
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 029788 5 KIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~ 26 (188)
||+|+|+|.+|+.+++.|.+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCC
Confidence 7999999999999999988664
No 251
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.51 E-value=2.5 Score=35.51 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=24.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+|+|.+|+.++..+..+ +.+|+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-CCcEEEEe
Confidence 4899999999999999988877 46766554
No 252
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.44 E-value=2.5 Score=36.18 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=23.9
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
..+|+|+|+|.+|+.+++.+.....-++..++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~ 209 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 36899999999999999998875323443443
No 253
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=81.31 E-value=1.9 Score=37.36 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=25.5
Q ss_pred CCcceEEEEccCHHHHHHHHHHHc------CCCceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~------~~~~~vv~Ind~ 36 (188)
|+++||||+|+|.||-..+-.+.+ .|..++.-+.|-
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 567899999999999877655544 244556566553
No 254
>PLN02494 adenosylhomocysteinase
Probab=81.00 E-value=2.6 Score=38.55 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=25.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|+|.|+|.||+.+++.+... +.+|+.++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999998877 47776654
No 255
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.91 E-value=5.3 Score=34.42 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=24.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
-+|.|.|.|.+|..+++.+.... . +++++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 46899999999999998887664 6 5666643
No 256
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.86 E-value=3.7 Score=35.91 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=22.4
Q ss_pred CccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 93 ~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
..|++|||||...+.+.+-..++.|=. +++
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt-~vl 271 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT-VVL 271 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE-EEE
Confidence 489999999999988877666665432 444
No 257
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=80.83 E-value=2.9 Score=38.49 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||||+|+|.+|+-+++.+... +++|+..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEe
Confidence 5799999999999999988877 58876554
No 258
>PRK07236 hypothetical protein; Provisional
Probab=80.71 E-value=2.7 Score=36.56 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=26.4
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|++.+|.|+|.|..|-.++..|..+ +++++-+-
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEe
Confidence 5678999999999999988888766 46665554
No 259
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=80.67 E-value=2.9 Score=35.21 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=27.5
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|||-|.|. |.+|+.+.+.+.++ ++++++++..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSRS 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEESTT
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCch
Confidence 49999999 99999999998886 5888898543
No 260
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=80.45 E-value=2.3 Score=37.50 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|||.+.|+|.+||-++..++.+.+.+|+.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 3899999999999776666655568888886
No 261
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.38 E-value=21 Score=30.55 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~In 34 (188)
-+|.|.|.|.+|..+++.+... +.+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA-GASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEc
Confidence 4799999999999998887776 464 66664
No 262
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.31 E-value=3.4 Score=35.82 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.||||+|+|.+|+.++..+... +++|+.. |+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~l~-D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVVAW-DP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEE-eC
Confidence 5799999999999999988877 5887654 44
No 263
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.29 E-value=4.2 Score=32.13 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.7
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..++-|.|. |.+|+.+++.+.+++ .+++.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 368999999 999999999998874 66766664
No 264
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=80.16 E-value=2.5 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|||+|+|.+|..+++.|.++. ++|...|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEeC
Confidence 48999999999999999999884 77766654
No 265
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=80.09 E-value=3.5 Score=33.23 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=23.4
Q ss_pred eEEEEc-cCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG-~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||+|+| .|.+|..+.+.|.+.. .+++..+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~ 31 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGS 31 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 899997 8999999999998764 5665443
No 266
>PLN02427 UDP-apiose/xylose synthase
Probab=79.86 E-value=3.3 Score=35.97 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=28.3
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++||.|-|. |.||+.+++.|.++++.+|+++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 368999999 999999999999875578888864
No 267
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.76 E-value=2.9 Score=37.47 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=25.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|+|.|+|.||+.+++.+... +.+++.+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-GARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-cCEEEEEe
Confidence 5899999999999999988876 47766653
No 268
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=79.64 E-value=21 Score=30.71 Aligned_cols=138 Identities=12% Similarity=0.172 Sum_probs=70.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|+|.|.+|..+++.+... +.+++.+... .+....+++ .+|. . -.++... +..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~---~~~~~~~~~---~~Ga----~--------~~i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVISSS---DKKREEALE---HLGA----D--------DYLVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCC---HHHHHHHHH---hcCC----c--------EEecCCC-----hHH
Confidence 4688999999999999888776 4677666543 222212221 1111 0 0011000 000
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccC-cCCCCcEEEcCChhhHhHHHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHE-YKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~~-~~~~~~ivs~~sCtT~~la~~ 162 (188)
..... .++|+||||+|...+.+.+-..++.|.+.+.+..++... .++... +..+..+..+..++..-+.-+
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 309 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPL-----QFVTPMLMLGRKVITGSFIGSMKETEEM 309 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCC-----cccHHHHhhCCcEEEEEecCCHHHHHHH
Confidence 11111 168999999996545555666676666544444332211 122221 112345555555555556666
Q ss_pred HHHHHHhcCceE
Q 029788 163 AKVIHDKFGIVE 174 (188)
Q Consensus 163 lk~l~~~~gI~~ 174 (188)
++.+.+. .++.
T Consensus 310 ~~~~~~g-~l~~ 320 (357)
T PLN02514 310 LEFCKEK-GLTS 320 (357)
T ss_pred HHHHHhC-CCcC
Confidence 6666553 4543
No 269
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.43 E-value=19 Score=32.54 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.||+|.|+|+-|+..+|.|.++. .++ .+.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQ-ALTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEE-EEEcC
Confidence 58999999999999999999874 654 34553
No 270
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.38 E-value=4.5 Score=30.16 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=24.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
..+++|.|.|.+|+.+++.+...+ ...+.+-+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 368999999999999999998764 333344443
No 271
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=79.12 E-value=16 Score=31.82 Aligned_cols=31 Identities=16% Similarity=0.519 Sum_probs=24.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|.|.|.+|...++.+.... .+++++..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~ 210 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG-LRVTVISR 210 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC-CeEEEEeC
Confidence 36899999999999988887774 67766654
No 272
>PTZ00325 malate dehydrogenase; Provisional
Probab=78.78 E-value=3.9 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.6
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
|.||+|.|+ |+||..++..|..++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~ 32 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNP 32 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCC
Confidence 479999999 999999988887554
No 273
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.75 E-value=3.8 Score=37.39 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=25.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC-CceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~-~~~vv~In 34 (188)
+||+|+|.|.+|..+.-.+.++. +++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 58999999999998887777663 58888884
No 274
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=78.69 E-value=4.4 Score=34.34 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|+|+|+|.+|..+...+..+.-.+++-+ |.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~-Di 30 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL-DI 30 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE-eC
Confidence 6899999999998887776531265544 54
No 275
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=78.51 E-value=9.2 Score=32.65 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=51.4
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
.-||-|.|. |++|+.+++.+...+.-.+.+||-. ++. .++ .| ++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~------------------~~~-~~v----------~G--~~~y-- 52 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPG------------------KGG-TTV----------LG--LPVF-- 52 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCC------------------CCc-cee----------cC--eecc--
Confidence 358999999 9999999998877652233345421 111 111 11 1111
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
+..+++|..- ++|+++-+.+.....+..+...+.|+|.+||
T Consensus 53 ~sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 53 DSVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CCHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 1233444210 2688888887776666667777778777655
No 276
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.38 E-value=1.2 Score=39.38 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|+|+|-+|..+++.|....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G 64 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG 64 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 368999999999999999998764
No 277
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.34 E-value=4.2 Score=35.20 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=25.4
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCC------ceEEEEe
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDD------VELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~------~~vv~In 34 (188)
+.||+|.|+ |.||..++..|..++- .+++.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 579999999 9999999999887542 3666663
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.32 E-value=3.8 Score=37.90 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=26.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-++-|.|+|++||.+.|.|.+++ .+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 46789999999999999998874 77788854
No 279
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.32 E-value=8 Score=33.87 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=53.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCE--EEEEEee
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK--PVTVFGV 81 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~--~i~v~~~ 81 (188)
-.+||.|+|.+|-.++.-...+.--+|.+| |.+ ++...+ ....| .-++ +|-+ .-++ +|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgv-DiN--~~Kf~~----ak~fG-----aTe~-------iNp~d~~~~i-~e 253 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGV-DIN--PDKFEK----AKEFG-----ATEF-------INPKDLKKPI-QE 253 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEE-ecC--HHHHHH----HHhcC-----ccee-------cChhhccccH-HH
Confidence 358999999999999888777766677787 332 222111 11111 1111 2211 0011 11
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcE-EEE
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK-VII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~-vvi 123 (188)
. ..++ .+.|+||-|||+|.-..+..+-.....|-++ |+|
T Consensus 254 v-i~Em--TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 254 V-IIEM--TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred H-HHHH--hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 1 1111 2358999999999887766554444455433 444
No 280
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=78.24 E-value=4.1 Score=34.71 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=24.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
||+|+|+|.+|+.++..|..++-. +++-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999998877533 555554
No 281
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.08 E-value=5.1 Score=30.95 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=26.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+.||.|.|+|++|+..++.+..-+ .+++.+..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 479999999999999999998885 88777765
No 282
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=77.92 E-value=2.2 Score=38.63 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.9
Q ss_pred eEEEEccCHHHHHHHHHHHcC
Q 029788 5 KIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~ 25 (188)
||.|+|+|.+|-.+++.|...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~ 21 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999998765
No 283
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=77.65 E-value=13 Score=32.95 Aligned_cols=30 Identities=43% Similarity=0.660 Sum_probs=24.2
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
||.|+|+|.+|+.++|.|.++. .+| .++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V-~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEV-TVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEE-EEEeC
Confidence 5889999999999999988874 665 45664
No 284
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=77.61 E-value=3.8 Score=34.33 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=24.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||+|+|+|.+|..+...|.+.. .+|..+..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEec
Confidence 38999999999999999888763 55555543
No 285
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.58 E-value=22 Score=31.51 Aligned_cols=89 Identities=25% Similarity=0.251 Sum_probs=50.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.+|.|+|+|..|+..++.|..+. .++.+ .|....+..... |. .|-.+.. ...+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~~~~~~~~~~-----------------------l~-~g~~~~~-~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV-IDTRITPPGLDK-----------------------LP-ENVERHT-GSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcCCCCchhHHH-----------------------Hh-cCCEEEe-CCCC
Confidence 47999999999999999877764 66544 553211100000 10 0111111 1112
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
+..+. +.|+||-+.|.-.+......+.+.|+. |++-
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~ 95 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVGD 95 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEH
Confidence 22221 468888888876666666677778874 5653
No 286
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=77.48 E-value=5.3 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind 35 (188)
.|+.|+|+|-+||.++..|.... ++ +.-+|.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 68999999999999999999884 54 666665
No 287
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.24 E-value=2.8 Score=35.33 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=32.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheec
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD 50 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~yd 50 (188)
+++|.+|+||.|..+.+.+.++. -++|+- |. +++.+..+-.|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y-D~--n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY-DV--NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE-cC--CHHHHHHHHhcC
Confidence 37999999999999999999884 777665 33 455555666543
No 288
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.95 E-value=2 Score=37.64 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|+|+|-+|..+++.|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999988653
No 289
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.91 E-value=3.9 Score=35.17 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc
Q 029788 5 KIGINGFGRIGRLVARVILQRDDV 28 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~ 28 (188)
||+|+|+|.||..++..|..++-+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~ 24 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF 24 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC
Confidence 799999999999998888776533
No 290
>PRK06444 prephenate dehydrogenase; Provisional
Probab=76.91 E-value=3.5 Score=33.22 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcC
Q 029788 4 VKIGINGF-GRIGRLVARVILQR 25 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~ 25 (188)
+|++|+|. |++||.+.+.+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 38999999 99999999888765
No 291
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=76.86 E-value=1.3 Score=42.05 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||.|+|+|-+|-.+++.|...+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC
Confidence 368999999999999999998774
No 292
>PRK06046 alanine dehydrogenase; Validated
Probab=76.73 E-value=4.7 Score=34.76 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=29.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+++|+|.|..|+..++.+...+.++.+.|-+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 579999999999999999886667999999887
No 293
>PRK10083 putative oxidoreductase; Provisional
Probab=76.67 E-value=14 Score=31.01 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=50.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|+|.|.+|+.+++.+...-+.+.+.+.+. +.+.+..+.++ |. . ..++-+.-.+ . +.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~----Ga-~-----------~~i~~~~~~~-~-~~ 221 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKES----GA-D-----------WVINNAQEPL-G-EA 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHh----CC-c-----------EEecCccccH-H-HH
Confidence 378999999999998887764213554444443 33433333322 11 0 1111100000 0 01
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
..... .++|++|+|+|.-.+...+..+++.+-+.+.+..+
T Consensus 222 ~~~~g---~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 222 LEEKG---IKPTLIIDAACHPSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred HhcCC---CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 11111 24679999998543445556677666655555433
No 294
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.62 E-value=23 Score=32.21 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+|.|.|+|+.|+.++|.|..+. .++. +.|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLR-VADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEE-EEcC
Confidence 47999999999999999998885 6664 4554
No 295
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=76.48 E-value=3.2 Score=34.89 Aligned_cols=23 Identities=13% Similarity=0.413 Sum_probs=20.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
-+|.|.|.|-+|-..+++|....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsG 53 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSG 53 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcC
Confidence 47999999999999999998764
No 296
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=76.47 E-value=5.5 Score=36.89 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=23.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||+|+|+|.-|-..++.|.+. +++++..-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g~~~~~fE 31 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-GLEVTCFE 31 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T-EEEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCeEEe
Confidence 5899999999999999999987 58887764
No 297
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.40 E-value=26 Score=28.22 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||.|+|.|.+|..-++.|.+.+ -+|+.|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 58999999999999999998874 5555553
No 298
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=76.11 E-value=5.4 Score=32.42 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||.|.|+ |.||+.+++.|.++ +.+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhC-CCEEEEEec
Confidence 68999999 99999999999887 477777654
No 299
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=76.01 E-value=7.6 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=23.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
-+|.|.|.|.||...++.+.... . +++++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK-ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 36899999999999988877664 5 566663
No 300
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.91 E-value=24 Score=30.98 Aligned_cols=131 Identities=15% Similarity=0.253 Sum_probs=74.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|+|.|+|-+|-..++.+..-. .+++++.-. .+.+....+. |-...++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~l----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKKL----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHHh----------------CCcEEEEcC--------C
Confidence 47999999989988888777664 899999754 2322122111 111222211 1
Q ss_pred CCCCC-CcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCC-CCCCeEEeecCcc-CcCCCCcEEEcCChhhHhHH
Q 029788 84 PEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEH-EYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 84 p~~~~-w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps-~d~p~~V~gvN~~-~~~~~~~ivs~~sCtT~~la 160 (188)
++.+. ..+ .+|+++++.+ ..+.+.+-..++.|=+-|++-.|. ...|.+ +.. ..-.+..|+.+..=|-.=+-
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~----~~~~li~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLL----PAFLLILKEISIVGSLVGTRADLE 293 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCC----CHHHhhhcCeEEEEEecCCHHHHH
Confidence 21111 111 2899999999 777777778887776666666663 222211 111 11113456666666655555
Q ss_pred HHHHHHHH
Q 029788 161 PLAKVIHD 168 (188)
Q Consensus 161 ~~lk~l~~ 168 (188)
-+|+...+
T Consensus 294 e~l~f~~~ 301 (339)
T COG1064 294 EALDFAAE 301 (339)
T ss_pred HHHHHHHh
Confidence 55555443
No 301
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.80 E-value=4.7 Score=34.48 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 029788 5 KIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~ 26 (188)
||+|+|.|.+|..++..|..++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 8999999999999999888765
No 302
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=75.71 E-value=5.2 Score=34.34 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=28.3
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++.||-|-|. |-||+.+++.|.+++ .+|+++..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 3479999999 999999999999884 78888854
No 303
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=75.67 E-value=23 Score=28.74 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind 35 (188)
-++.|+|.|.+|+.+++.+.... .+ ++++..
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~ 130 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDP 130 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCcEEEECC
Confidence 36899999999999988887663 66 666643
No 304
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=75.57 E-value=4.3 Score=36.03 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=28.7
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhhe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK 48 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ 48 (188)
||+|+|.|.+|..+...+. . +++|+.++- +.+.+.-+.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~---d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDI---LPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEEC---CHHHHHHHHc
Confidence 8999999999999986555 4 488887754 4555555544
No 305
>PLN02240 UDP-glucose 4-epimerase
Probab=75.44 E-value=5.3 Score=33.91 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=27.4
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..||.|.|. |.||+.+++.|.+++ .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 468999999 999999999998874 78888754
No 306
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=75.38 E-value=4.7 Score=36.41 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=24.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
.+|+|.|+|.||+.+++.+... +.+|+.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~-Ga~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL-GARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 5799999999999999988877 4675554
No 307
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.32 E-value=21 Score=31.80 Aligned_cols=84 Identities=20% Similarity=0.172 Sum_probs=49.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCC-ceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee-
Q 029788 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV- 81 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~-~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~- 81 (188)
.||.|+|+|..|+..++.|..+.+ .++. +.|....+....+ |.- | +.++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~-----------------------l~~-g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ-----------------------LPE-D--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH-----------------------hhc-C--CEEEeCC
Confidence 579999999999999999887644 6554 5664211110000 100 1 112111
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCC
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGa 118 (188)
.++++++ +.|+|+-+.|.-.+........+.|.
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2444442 57899988888666555555556665
No 308
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=75.18 E-value=19 Score=30.36 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=52.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
+|.|.|.|.+|+.+++.+... +.+++.+... .+.+.++.++ |. + -.++.++-... +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~---~~~~~~~~~~----g~-----------~-~~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM-GFRTVAISRG---SDKADLARKL----GA-----------H-HYIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCC---hHHHHHHHHc----CC-----------c-EEecCCCccHH--HHH
Confidence 689999999999998888876 4677777543 2333333221 10 0 11111110000 001
Q ss_pred CCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCC
Q 029788 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~p 126 (188)
. .| .++|++++|+|.-...+.+..++..+...+.+..+
T Consensus 224 ~--~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 224 Q--EL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred H--hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecC
Confidence 1 12 26899999987544555566777666544444433
No 309
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=75.05 E-value=5 Score=35.90 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=25.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|+|+|+|.+|+.+++.|...+-.+++.++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999998764245555554
No 310
>PRK06153 hypothetical protein; Provisional
Probab=75.02 E-value=1.9 Score=38.46 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
.||+|+|+|-+|-.++..|...+=-+++-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999987753344444
No 311
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=74.98 E-value=7.5 Score=26.49 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.4
Q ss_pred cceEEEEccCHHHHHHHHHHHcC
Q 029788 3 KVKIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~ 25 (188)
..+++|.|+|.+|+.+++.+.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc
Confidence 36899999999999999988876
No 312
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=74.90 E-value=11 Score=31.78 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~I 33 (188)
-+|.|.|.|.+|+.+++.+..+. + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 37899999999999999888774 5 67777
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=74.77 E-value=4.9 Score=34.22 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=24.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+||+|+|+|.||..+.-.|... +.+|+.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r 33 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVRLILR 33 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeEEEEe
Confidence 36999999999999888777655 355555544
No 314
>PRK07326 short chain dehydrogenase; Provisional
Probab=74.57 E-value=6 Score=31.33 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=26.4
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.+|+.+++.|.++ +.+|+.+..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeC
Confidence 57999999 99999999999887 578777754
No 315
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=73.67 E-value=21 Score=30.66 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=23.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
-+|.|.|.|.+|..+++.+.... . .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 47899999999999988877764 6 466664
No 316
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=73.57 E-value=14 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDD 27 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~ 27 (188)
-.|||.|+ |-||-.+.|.|..+..
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~ 192 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG 192 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC
Confidence 46999999 9999999998876643
No 317
>PRK06988 putative formyltransferase; Provisional
Probab=73.47 E-value=5.7 Score=34.16 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.8
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|| +||.+.|.+.+|...++.|.++. +++++|-
T Consensus 1 ~~-mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~Vv 32 (312)
T PRK06988 1 MK-PRAVVFAYHNVGVRCLQVLLARG-VDVALVV 32 (312)
T ss_pred CC-cEEEEEeCcHHHHHHHHHHHhCC-CCEEEEE
Confidence 65 79999999999999999998774 7776663
No 318
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.41 E-value=7.7 Score=28.84 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=24.3
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|+|+|+|.||..+...|.+. ..++.-+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEcc
Confidence 78999999999999888774 5777777654
No 319
>PLN02740 Alcohol dehydrogenase-like
Probab=73.14 E-value=12 Score=32.55 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=23.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
-+|.|.|.|.||...++.+.... . +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 37999999999999999887774 5 466663
No 320
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.03 E-value=7.5 Score=32.39 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=24.8
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|-|+|. |.+|+.+++.+... +.+++++..
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~ 176 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAG 176 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 36889997 99999999888776 477777654
No 321
>PRK08223 hypothetical protein; Validated
Probab=73.00 E-value=3.3 Score=35.46 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=20.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
.-||.|+|+|-+|-.++..|....
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC
Confidence 368999999999999999887663
No 322
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=72.98 E-value=24 Score=34.28 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=26.0
Q ss_pred CCc-ceEEEEccCHHHHHH-HHHHHcCCCceEEEEeCC
Q 029788 1 MGK-VKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~-~~vaInG~GrIGr~~-lr~l~~~~~~~vv~Ind~ 36 (188)
||+ .+|.|+|.|..|+.. ++.|.++. .+| .++|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-~~V-~~sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-YSV-SGSDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-CeE-EEECC
Confidence 553 469999999999997 88888774 665 45665
No 323
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=72.98 E-value=14 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~I 33 (188)
-+|.|.|.|.+|+..++.+... +.+ ++++
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~ 191 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAI 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 3799999999999998888766 465 4444
No 324
>PRK06545 prephenate dehydrogenase; Validated
Probab=72.89 E-value=5.3 Score=34.88 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 029788 5 KIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~ 26 (188)
||+|+|+|.||..+.+.+....
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 7999999999999999998764
No 325
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=72.89 E-value=4.6 Score=35.79 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=22.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDD 27 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~ 27 (188)
+.+|||+|||-.||.+.+-+...++
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc
Confidence 4789999999999999999988764
No 326
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=72.73 E-value=8.5 Score=34.32 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.2
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
++||+|+|+ |+||..++-.+..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 589999999 999999998887664
No 327
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.68 E-value=24 Score=29.68 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=66.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCce-EEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+|.|.|.|.+|+.+++.+...+ .+ ++++... .+....+-++.. . -.++.+.... .++
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~---~~~~~~~~~~ga-----~-----------~v~~~~~~~~--~~~ 228 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRH---EDRQALAREFGA-----T-----------DIVAERGEEA--VAR 228 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEECCC---HHHHHHHHHcCC-----c-----------eEecCCcccH--HHH
Confidence 6888999999999988877764 65 5555432 222111111110 0 1111110000 000
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCc-cCcCCCCcEEEcCChhhHhHHHH
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNE-HEYKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~-~~~~~~~~ivs~~sCtT~~la~~ 162 (188)
...+.. ..++|++++|+|.-.+.+.+..++..+...+.++.+.... .+|. ..+.....+...+.+.-..+..+
T Consensus 229 i~~~~~-~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (345)
T cd08287 229 VRELTG-GVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGV-----ELDVRELFFRNVGLAGGPAPVRRYLPEL 302 (345)
T ss_pred HHHhcC-CCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCC-----ccCHHHHHhcceEEEEecCCcHHHHHHH
Confidence 111111 1369999999986545566667776654333333332111 1222 22222334555666666666666
Q ss_pred HHHHHH
Q 029788 163 AKVIHD 168 (188)
Q Consensus 163 lk~l~~ 168 (188)
++.+.+
T Consensus 303 ~~~~~~ 308 (345)
T cd08287 303 LDDVLA 308 (345)
T ss_pred HHHHHc
Confidence 665543
No 328
>PRK08655 prephenate dehydrogenase; Provisional
Probab=72.59 E-value=6.3 Score=35.50 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=23.8
Q ss_pred eEEEEc-cCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG-~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||+|+| +|.+|+.+.+.+.+.. .++...+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 899998 7999999999998764 6665554
No 329
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=72.57 E-value=7.4 Score=28.73 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=51.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheecc-ccccccccceEEeCCCceE-EC-CEEEEEE
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDS-VHGQWKHHELKVKDDKTLL-FG-EKPVTVF 79 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS-~~g~~~~~~v~~~~~~~l~-i~-g~~i~v~ 79 (188)
..||.|.|+|.+|..+++.|...+--++.-+.+-..+++.+.+-+-|.+ .-|+.. ... +. . .|. ++ +-.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~K-a~~-~~-~-~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNK-AEA-AK-E-RLQEINPDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBH-HHH-HH-H-HHHHHSTTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHH-HHH-HH-H-HHHHhcCceeeeee
Confidence 3689999999999999999986642244444433334555544322222 224432 110 00 0 011 11 1233333
Q ss_pred eecCC--CCC-CCcCCCccEEEeecCCccCHhhHHH
Q 029788 80 GVRNP--EEI-PWAETGAEYVVESTGVFTDKDKAAA 112 (188)
Q Consensus 80 ~~~~p--~~~-~w~~~~vdiV~e~tg~~~~~~~~~~ 112 (188)
.. .. +++ .+- .+.|+||+|+..+..+.....
T Consensus 78 ~~-~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 78 PE-KIDEENIEELL-KDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp ES-HCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHH
T ss_pred ec-ccccccccccc-cCCCEEEEecCCHHHHHHHHH
Confidence 22 12 111 111 268999999988766555443
No 330
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=72.46 E-value=5.2 Score=35.97 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=26.1
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+.+|-|.|+ |++||++.+.|.++. |.+-+.-
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg-f~vra~V 110 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG-FSVRALV 110 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC-Ceeeeec
Confidence 578999999 999999999999995 6555553
No 331
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=72.46 E-value=36 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=23.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-++.|.|.|.+|+.+++.+... +.++..+..
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~ 201 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSR 201 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEEEcC
Confidence 3688888899999988877766 467666644
No 332
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=72.29 E-value=26 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=24.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|.|.|.+|+.+++.+... +++++.+..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM-GFETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3689999988999988888776 477777654
No 333
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=72.28 E-value=6.5 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..+|+|+|||.-|+.....|.++. ++|+--..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCEEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 368999999999999999999884 77654443
No 334
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.26 E-value=31 Score=31.20 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=24.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.||.|.|+|..|+.+++.|.... .++ .+.|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CDV-VVADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CEE-EEECC
Confidence 57999999999999999998775 554 44553
No 335
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=72.15 E-value=13 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=22.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~In 34 (188)
-+|.|+|.|.+|+.+++.+.... .+ ++++.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~ 218 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVD 218 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 36899999999999888887764 64 55543
No 336
>PLN02827 Alcohol dehydrogenase-like
Probab=72.01 E-value=12 Score=32.64 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=22.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~I 33 (188)
-+|.|.|.|.+|..+++.+.... .. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 47899999999999988877664 64 4444
No 337
>PRK09126 hypothetical protein; Provisional
Probab=71.96 E-value=6.2 Score=34.14 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||..+|.|+|.|..|-.++..|..+ +++++-+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEe
Confidence 7788999999999999888887766 57776664
No 338
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=71.86 E-value=5.6 Score=34.36 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.4
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|+..||||+|+|.+|+-++..+.. .+++|+. .|.
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l-~D~ 34 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVL-KDI 34 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceEE-EeC
Confidence 455799999999999999988776 4577644 455
No 339
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.85 E-value=6.6 Score=34.82 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|+|++|+.+++.|.++ +.+++.|..
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid~ 262 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE-GYSVKLIER 262 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEC
Confidence 6899999999999999998876 477777754
No 340
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=71.84 E-value=20 Score=30.68 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=52.5
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEee
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+-||-|.|. |.+|+.+++.|.+.+.-.+.+||-.. . |+... | ++.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~-~---------~~~v~-------------------G--~~~y-- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGK-G---------GTTVL-------------------G--LPVF-- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCC-C---------CCeEe-------------------C--eecc--
Confidence 368999999 99999999999876422444666320 0 11111 1 1111
Q ss_pred cCCCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
++.+++|=.. ++|+++-+++.....+..+...+.|+|.+||
T Consensus 55 ~sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 NTVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CCHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 1333343100 2788888888777667777777788877555
No 341
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=71.76 E-value=6.8 Score=34.51 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=25.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|.|+|+|++|+.+++.+.... .+++.++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~ 198 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILDI 198 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEEC
Confidence 57999999999999999998774 67666643
No 342
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.07 E-value=7.7 Score=33.44 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
+||+|+|+ |.||..++..|..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999999 999999998887665
No 343
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.05 E-value=8.7 Score=30.27 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.8
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++.+|-|.|. |.||+.+++.|.++. .+++.+..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~ 38 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG-ADVVVHYR 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC
Confidence 3468999999 999999999998875 56545443
No 344
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=70.97 E-value=6.9 Score=33.75 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcC--CCceEEEEeC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~--~~~~vv~Ind 35 (188)
|++.+|.|+|+|..|-.++-.|..+ .+++++-+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 7788999999999999887777654 2577766654
No 345
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=70.68 E-value=48 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
-+|.|+|.|.+|+..++.+.... . .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAG-ASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 36899999999999998888764 6 555553
No 346
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=70.68 E-value=4.9 Score=36.94 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+.+||++|+|.+|+.+.+.|.++ +++|+.-|.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~-G~~V~V~NR 37 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK-GFPISVYNR 37 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC-CCeEEEECC
Confidence 36899999999999999999988 488766654
No 347
>PRK15076 alpha-galactosidase; Provisional
Probab=70.59 E-value=5.6 Score=35.84 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=11.7
Q ss_pred ceEEEEccCHHHH
Q 029788 4 VKIGINGFGRIGR 16 (188)
Q Consensus 4 ~~vaInG~GrIGr 16 (188)
+||+|+|.|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5999999999984
No 348
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.49 E-value=30 Score=30.87 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=24.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
-.|+|+|+|..|+.++|.|.++. .++ .+.|.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G-~~v-~~~D~ 37 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQG-IPF-AVMDS 37 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCC-CeE-EEEeC
Confidence 35899999999999999998884 665 45664
No 349
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=70.22 E-value=5.6 Score=36.25 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=25.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||++|+|++|+.+++.|.++. ++|...|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeC
Confidence 4899999999999999999884 78776654
No 350
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=70.14 E-value=6.5 Score=35.32 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=25.7
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++||||+|.|.+|..+...+.+ . +++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C-CEEEEEeC
Confidence 4799999999999999988665 3 88888754
No 351
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.94 E-value=8.3 Score=32.87 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=22.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
||+|+|+|.+|..+...|.+.. -+|.-+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~ 29 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLW 29 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence 7999999999999998887663 455434
No 352
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=69.91 E-value=18 Score=30.50 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=24.7
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|+ |.+|+.+++.+... +.+++++..
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~ 184 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAG 184 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 36899999 99999999888776 477766654
No 353
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=69.85 E-value=19 Score=31.68 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=24.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
-+|.|.|.|.||+.+++.+... +.+++.+.+.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL-GAAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence 3688999999999998888766 4665555554
No 354
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.82 E-value=7.5 Score=31.35 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+|.|.|+ |.+|+.+++.|.++ ..++++++.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r 32 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR-GHEVRAAVR 32 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC-CCEEEEEEe
Confidence 7999999 99999999999998 577777775
No 355
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=69.64 E-value=9.3 Score=34.65 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
..+|+|+|+|..|-..++.|.+. +++++.+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE 40 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFE 40 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEe
Confidence 47899999999999999988876 47766664
No 356
>PRK08328 hypothetical protein; Provisional
Probab=69.57 E-value=8.8 Score=31.43 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=23.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..||.|+|+|-+|..+++.|.... +.-+.|-|
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD 58 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG-VGRILLID 58 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 368999999999999999988664 43333334
No 357
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=69.54 E-value=12 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=23.9
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||.|+|.|.+|-.++..+.+.. .++.-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEe
Confidence 6899999999999999998774 6665554
No 358
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=69.24 E-value=16 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=22.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~In 34 (188)
-+|.|+|.|.+|+.+++.+... +.+ ++++.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~ 197 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS-GARKVIVSD 197 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3789999999999998877665 466 55553
No 359
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=69.19 E-value=25 Score=29.15 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=25.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
+|.|+|. |.+|+.+++.+... +.+++.+...
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~ 180 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKL-GYEVVASTGK 180 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHC-CCeEEEEecC
Confidence 7899999 99999999888877 4777777543
No 360
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=69.17 E-value=26 Score=29.39 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEcc-CHHHHHHHHHHHcCCC-ceEE
Q 029788 8 INGF-GRIGRLVARVILQRDD-VELV 31 (188)
Q Consensus 8 InG~-GrIGr~~lr~l~~~~~-~~vv 31 (188)
|-|. |.+|+.+++.|.++++ .+|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr 27 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVR 27 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEE
Confidence 5677 9999999999998875 4443
No 361
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=68.92 E-value=8.7 Score=34.56 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+|+|.|+|.||+.+++.+.... .+++. .|.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 58999999999999999888774 56555 444
No 362
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=68.79 E-value=9.4 Score=32.65 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=23.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
+||+|+|.|.+|..++..+..++..+++-+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv 31 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLL 31 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEE
Confidence 489999999999999998887643364444
No 363
>PLN00106 malate dehydrogenase
Probab=68.72 E-value=9.2 Score=33.16 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.3
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDD 27 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~ 27 (188)
..||+|.|+ |+||..++..|..++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~ 43 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL 43 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 369999999 9999999998886653
No 364
>PLN00198 anthocyanidin reductase; Provisional
Probab=68.68 E-value=9.6 Score=32.31 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.4
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
++.+|.|-|. |-||+.+++.|.++. .+|+++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 3578999998 999999999999874 6776554
No 365
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.52 E-value=12 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=25.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.||-|+|.|.+|...++.|.+.+ -+++-|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 68999999999999999998774 5666663
No 366
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=68.43 E-value=9.3 Score=34.34 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=27.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+||-|-|. |-||+.+++.|.++ +.+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence 368999999 99999999999988 478888864
No 367
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=68.42 E-value=37 Score=30.48 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=24.9
Q ss_pred ceEEEEccCHHHHH-HHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~-~lr~l~~~~~~~vv~Ind~ 36 (188)
.||.|+|+|..|+. ++|.|..+. .+| .++|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECC
Confidence 57999999999999 799888874 665 45564
No 368
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=68.39 E-value=9.9 Score=33.48 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=27.4
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+||.|.|. |.||+.+++.|.++ +.+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEe
Confidence 468999999 99999999999887 478877764
No 369
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=68.29 E-value=61 Score=27.81 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=23.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
-+|.|+|.|.+|...++.+.... . .++++..
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~ 219 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDI 219 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 46899999999999988887764 5 4666643
No 370
>PLN02778 3,5-epimerase/4-reductase
Probab=68.11 E-value=14 Score=31.12 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.5
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEE
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~ 32 (188)
++||-|-|. |.||+.+++.|.+++ .+++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 479999999 999999999998874 56653
No 371
>PRK07411 hypothetical protein; Validated
Probab=68.10 E-value=3.3 Score=36.76 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=24.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..||.|+|+|-+|-.++..|.... +.-..|-|
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD 69 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVD 69 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 368999999999999999888663 43334444
No 372
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=68.08 E-value=2.2 Score=37.90 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=23.9
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..||.|+|+|-+|-.++..|.... +.-+.|-|
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G-vg~i~lvD 73 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG-VGTLGIVE 73 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 468999999999999999888653 43334433
No 373
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=67.74 E-value=11 Score=30.02 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..++.|.|. |.+|+.+++.+.++. .+|+.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 357999999 999999999998874 67777754
No 374
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.39 E-value=72 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=23.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~In 34 (188)
-+|.|+|.|.+|+.+++.+.... .+ ++.+.
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~ 191 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAE 191 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEC
Confidence 37899999999999988887764 65 44443
No 375
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=67.35 E-value=16 Score=30.32 Aligned_cols=96 Identities=11% Similarity=0.156 Sum_probs=51.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|-|+|.|.+|+.+++.+... +.+++.+... .+...++-++.. . -.++.+.... .+ .
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s---~~~~~~~~~~g~-----~-----------~~~~~~~~~~-~~-~ 224 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIK---EEKLELAKELGA-----D-----------EVLNSLDDSP-KD-K 224 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCC---HHHHHHHHHhCC-----C-----------EEEcCCCcCH-HH-H
Confidence 3688888899999998887776 4777766442 333333322110 0 0011000000 00 0
Q ss_pred CCCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEE
Q 029788 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvi 123 (188)
....+ ..++|+|++|.|.....+.+..+++.+.+.+.+
T Consensus 225 ~~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 225 KAAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00011 136999999998554455667788777644434
No 376
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=67.28 E-value=9 Score=35.25 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=25.9
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.||||+|+|.+|+-++..+... +++++..+-
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEEEEeC
Confidence 5899999999999999988877 588766643
No 377
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=67.22 E-value=4.5 Score=40.41 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.0
Q ss_pred cceEEEEccCHHHHHHHHHHHcC
Q 029788 3 KVKIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~ 25 (188)
..||.|+|+|.+|-.+++.|...
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~ 441 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALM 441 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHh
Confidence 36899999999999999988754
No 378
>PRK08017 oxidoreductase; Provisional
Probab=67.09 E-value=12 Score=29.93 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=26.0
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.||+.+++.|.+++ .+++.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 57999999 999999999998774 67777654
No 379
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.05 E-value=18 Score=31.48 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=26.9
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~ 37 (188)
+|-|-|- |-||-...+.|.+. +.++|.+.++.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~ 34 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLS 34 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-CCeEEEEecCC
Confidence 6777777 99999999999987 58988887764
No 380
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=67.05 E-value=11 Score=33.04 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=26.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|+|+|.|..||.+.+++... +++++.+..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l-G~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL-GYKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEeC
Confidence 5899999999999999888877 588777743
No 381
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=66.95 E-value=10 Score=32.39 Aligned_cols=34 Identities=12% Similarity=0.346 Sum_probs=28.1
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|++..|.|+|.|-+|..++..|.++ .++|+-|..
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~ 34 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDR 34 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 5667899999999999999888887 477766653
No 382
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.82 E-value=34 Score=30.31 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.++.|.|.|++|+..++.|.+.. .+|+. .|.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTV-NDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEE-EcC
Confidence 57999999999999999998874 66544 453
No 383
>PRK08618 ornithine cyclodeaminase; Validated
Probab=66.80 E-value=13 Score=31.95 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+++|+|.|.+||..++++.....++-+.|-+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 579999999999999988765445777778775
No 384
>PRK08163 salicylate hydroxylase; Provisional
Probab=66.79 E-value=9.8 Score=32.93 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=24.1
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
++.+|.|+|.|..|-.++..|..+ +++++-+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEE
Confidence 357899999999999888877765 4665555
No 385
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=66.64 E-value=19 Score=30.37 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|.|.+|+.+++.+... +++++++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL-GARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 3799999999999998888766 588777754
No 386
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=66.41 E-value=22 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.7
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
-+|.|+|+ |.+|+.+++.+... +. +++++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 37999999 99999999887766 46 6777754
No 387
>PRK09291 short chain dehydrogenase; Provisional
Probab=66.22 E-value=13 Score=29.81 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.0
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|+ .++-|.|. |.||+.+++.|.++. .++++...
T Consensus 1 m~-~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 1 MS-KTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 43 57999999 999999999998874 77777654
No 388
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.11 E-value=36 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=24.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|.|.+|+.+++.+.... .+++++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 47999999669999998887664 77766644
No 389
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=65.90 E-value=10 Score=33.85 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=24.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
.+|+|+|+|.+|+.+++.|...+ + +++.++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 58999999999999999998764 5 4544544
No 390
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.81 E-value=26 Score=28.71 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=24.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind 35 (188)
-+|.|+|.|.+|+.+++.+... +++ ++.+..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA-GARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC
Confidence 3689999999999999888776 477 666644
No 391
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=65.76 E-value=20 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=24.4
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|+ |.+|+.+++.+... +.+++++..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 36899997 99999999888766 467766654
No 392
>PRK08013 oxidoreductase; Provisional
Probab=65.36 E-value=11 Score=33.05 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=26.0
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|+...|.|+|.|..|-.++..|..+ +++++-+.
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE 33 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLE 33 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEe
Confidence 6567999999999999888777655 57766664
No 393
>PRK12827 short chain dehydrogenase; Provisional
Probab=65.02 E-value=13 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=25.9
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
..++-|.|. |.||+.+++.|.+++ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 468999999 999999999999874 6776654
No 394
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=64.88 E-value=15 Score=33.37 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.6
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQR 25 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~ 25 (188)
.+||+|+|+ |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 489999999 99999999888766
No 395
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=64.76 E-value=15 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=21.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.++.|.|||.+||-+++.|.... .++ .|.+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~V-~V~e~ 54 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-ARV-TVTEI 54 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--EE-EEE-S
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CEE-EEEEC
Confidence 57999999999999999998774 433 55554
No 396
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=64.64 E-value=12 Score=31.49 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.7
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
||.|.|. |-||+.+++.|.++ +.+|+.+..
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~ 32 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN 32 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC-CCeEEEEec
Confidence 8999998 99999999999887 478877753
No 397
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=64.26 E-value=11 Score=32.63 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|.+.+|.|+|.|..|-.++..|..+ +++++-+-
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E 33 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQ-GRSVAVIE 33 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEc
Confidence 6557999999999999888777665 46666554
No 398
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=64.04 E-value=11 Score=32.45 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=23.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||.|.|+|.||..+.-.|...+ -++.-+..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R 31 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVR 31 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEec
Confidence 48999999999999888887765 33334433
No 399
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=63.83 E-value=28 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=24.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|.|.|.+|+.+++.+......+++++..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 36899999889999988887664367777654
No 400
>PRK06914 short chain dehydrogenase; Provisional
Probab=63.81 E-value=17 Score=29.68 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.7
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|+...+-|.|. |.+|+.+++.|.++ +.+|+.+..
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r 35 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMR 35 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeC
Confidence 55556889999 99999999999887 477777754
No 401
>PRK12829 short chain dehydrogenase; Provisional
Probab=63.40 E-value=14 Score=29.65 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=26.7
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..++-|.|. |.||+.+++.|.+++ .+++.+..
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r 43 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDV 43 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 478999999 999999999998874 67766654
No 402
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=63.28 E-value=49 Score=27.48 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=25.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++.|.|.|.+|+.+++.+.+.. .++...|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 47999999999999999998775 57666654
No 403
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=63.28 E-value=76 Score=26.92 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=24.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
-+|.|.|.|.+|+.+++.+... +. .++++..
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~ 210 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDG 210 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 3689999999999999888776 46 6666643
No 404
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=63.02 E-value=12 Score=35.58 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=24.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCC-CceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~-~~~vv~In 34 (188)
.||+|+|+|.+|+.+++.+.... ..+|..++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d 35 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVD 35 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 68999999999999999988764 23555554
No 405
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=62.85 E-value=13 Score=33.25 Aligned_cols=32 Identities=31% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|| .||.|.|.|.++..+++++.+. +++++++.
T Consensus 1 ~~-kkili~g~g~~~~~~~~aa~~l-G~~vv~~~ 32 (449)
T TIGR00514 1 ML-DKILIANRGEIALRILRACKEL-GIKTVAVH 32 (449)
T ss_pred Cc-ceEEEeCCCHHHHHHHHHHHHc-CCeEEEEE
Confidence 54 6999999999999999999988 59998885
No 406
>PRK05086 malate dehydrogenase; Provisional
Probab=62.61 E-value=14 Score=31.67 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHc
Q 029788 4 VKIGINGF-GRIGRLVARVILQ 24 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~ 24 (188)
+||+|+|+ |+||+.++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 48999999 9999999887754
No 407
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=62.59 E-value=12 Score=31.03 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.0
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+|.|.|. |.||+.+++.|.+++ .+++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 7999999 999999999998875 67777765
No 408
>PRK05586 biotin carboxylase; Validated
Probab=62.57 E-value=12 Score=33.55 Aligned_cols=31 Identities=32% Similarity=0.250 Sum_probs=27.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
..||+|.|-|.+|+.+++.+.+. +++++++.
T Consensus 2 ~kkvli~g~G~~~~~~~~aa~~l-G~~~v~v~ 32 (447)
T PRK05586 2 FKKILIANRGEIAVRIIRACREM-GIETVAVY 32 (447)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCcEEEEc
Confidence 36999999999999999999887 58877883
No 409
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=62.53 E-value=13 Score=35.08 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=28.0
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||.|-|. |-||+.+++.|.++.+.+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 68999999 999999999999764588888865
No 410
>PRK07577 short chain dehydrogenase; Provisional
Probab=62.50 E-value=17 Score=28.70 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|+..++-|.|. |.||+.+++.+.++. .+++.+..
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r 35 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIAR 35 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 44467999999 999999999998874 67777654
No 411
>PLN00203 glutamyl-tRNA reductase
Probab=62.48 E-value=11 Score=34.91 Aligned_cols=33 Identities=21% Similarity=0.533 Sum_probs=25.8
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..+|+|+|+|.+|+.+++.|..++--+++.+|.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 368999999999999999998775224555554
No 412
>PRK06180 short chain dehydrogenase; Provisional
Probab=62.45 E-value=16 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.5
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+.++-|.|. |-||+.+++.|.++ +.+|+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeC
Confidence 357999999 99999999999877 477777754
No 413
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=62.38 E-value=33 Score=28.83 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCce-EEEEeC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind 35 (188)
+|.|+|.|.+|+.+++.+... +.+ ++.+..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 689999999999999877766 465 666654
No 414
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.28 E-value=23 Score=29.80 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=23.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|.|.+|+.+++.+... +.+++.+.+
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~-G~~~v~~~~ 193 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR-GVGPIVASD 193 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3689999999999988877766 365444444
No 415
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=62.22 E-value=16 Score=28.16 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=26.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
++.|.|+|..|+.+++.|.++ ++++++.-|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 478999999999999998765 6888888764
No 416
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.18 E-value=27 Score=29.85 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=22.8
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|.|.+|+.+++.+.... ...+.+.+
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~ 213 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFG-APRIVIVD 213 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 37899999999999988887663 55333444
No 417
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.18 E-value=15 Score=33.94 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.5
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
++.+|.|+|+|.-|-..+|.|.+. +++|+-.-
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLE 45 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLE 45 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEe
Confidence 457999999999999999999987 48765553
No 418
>PLN02206 UDP-glucuronate decarboxylase
Probab=62.14 E-value=14 Score=33.33 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=27.1
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||-|-|. |-||+.+++.|.+++ .+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 68999999 999999999999884 78888754
No 419
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=62.13 E-value=14 Score=32.08 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=27.6
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+||.|.|. |-||+.+++.|.+++ .+|+++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 478999999 999999999999874 78888864
No 420
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.13 E-value=27 Score=29.58 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=22.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~In 34 (188)
-+|.|+|.|.+|+.+++.+... +.+ ++.+.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~ 198 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR-GAGRIIAVG 198 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEe
Confidence 4789999999999999888766 454 44443
No 421
>PTZ00357 methyltransferase; Provisional
Probab=62.04 E-value=30 Score=33.68 Aligned_cols=101 Identities=11% Similarity=0.181 Sum_probs=52.6
Q ss_pred ceEEEEcc--CHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEe
Q 029788 4 VKIGINGF--GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 4 ~~vaInG~--GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+.|.|+|+ |..-+..++++.+.. +++|.+|-+ .++..+++++---..-.|. + ..... |..++|..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEK---NPpAA~~tllr~~N~eeW~-------n-~~~~~-G~~VtII~ 769 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEK---NLPAAAFTRMRWANDPEWT-------Q-LAYTF-GHTLEVIV 769 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEec---CcchHHHHHHHHhcccccc-------c-ccccC-CCeEEEEe
Confidence 46999999 555566677766432 588999976 2333333332100111232 1 00001 11222221
Q ss_pred ecCCCC-------------CCCcCCCccEEE-eecCCccCHhhHHHHHhCCCcE
Q 029788 81 VRNPEE-------------IPWAETGAEYVV-ESTGVFTDKDKAAAHLKGGAKK 120 (188)
Q Consensus 81 ~~~p~~-------------~~w~~~~vdiV~-e~tg~~~~~~~~~~~l~aGak~ 120 (188)
. |..+ ..|+ .+||+| |-.|.|-.-|..+.-|+ |+.+
T Consensus 770 s-DMR~W~~pe~~~s~~~P~~~g--KaDIVVSELLGSFGDNELSPECLD-GaQr 819 (1072)
T PTZ00357 770 A-DGRTIATAAENGSLTLPADFG--LCDLIVSELLGSLGDNELSPECLE-AFHA 819 (1072)
T ss_pred C-ccccccccccccccccccccc--ccceehHhhhcccccccCCHHHHH-HHHH
Confidence 1 2221 2243 589988 55699999998888774 4443
No 422
>PRK06182 short chain dehydrogenase; Validated
Probab=61.96 E-value=17 Score=29.66 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|...++-|.|. |.||+.+++.+.++ +.+|+.+..
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r 35 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQ-GYTVYGAAR 35 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeC
Confidence 55568999999 99999999999877 477777654
No 423
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=61.84 E-value=13 Score=32.48 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=25.2
Q ss_pred CC-cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~-~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|| ..+|.|+|+|.+|-.++-.|..+ +++++-+-
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE 34 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKES-DLRIAVIE 34 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhC-CCEEEEEc
Confidence 44 46899999999999888777655 57765553
No 424
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=61.76 E-value=12 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=25.2
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
||.|.|. |.||+.+++.|.++ +.+++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCC
Confidence 5889998 99999999999887 477777754
No 425
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=61.12 E-value=14 Score=32.22 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=25.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|.|+|.|.+|...++.|.++ +.+|+-+-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle 31 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFD 31 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEe
Confidence 4999999999999999888876 46776664
No 426
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=60.91 E-value=1.1e+02 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=24.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|.|. |.+|+.+++.+... +++++.+..
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~~~ 226 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA-GANPVAVVS 226 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCeEEEEeC
Confidence 37899998 99999998877766 577766643
No 427
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=60.46 E-value=26 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=24.8
Q ss_pred ceEEEEccCH-HHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGR-IGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~Gr-IGr~~lr~l~~~~~~~vv~Ind 35 (188)
.||.|+|+|. +|+.+++.|.++. .+++.++.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 6899999997 4998999998874 56666665
No 428
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=60.42 E-value=15 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.1
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcC---CCceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~---~~~~vv~Ind~ 36 (188)
||+.||.|+|.|..|-.+++.|.++ ++++|+-+.+-
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e 39 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE 39 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 7667999999999999888887643 46888888753
No 429
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=60.41 E-value=25 Score=30.19 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=22.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCce-EEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~-vv~I 33 (188)
-+|.|+|.|.+|+.+++.+...+ .. ++++
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~ 214 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAG-ASRIIAV 214 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37899999999999988877664 54 4444
No 430
>PRK08263 short chain dehydrogenase; Provisional
Probab=60.36 E-value=19 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=27.3
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
|+..++-|-|. |.||+.+++.+.++. .+++.+..
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r 35 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERG-DRVVATAR 35 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 55567999999 999999999998774 67666654
No 431
>PLN02572 UDP-sulfoquinovose synthase
Probab=60.29 E-value=15 Score=33.04 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=26.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+||-|-|. |.||+.+++.|.+++ .+|+.+.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 68999999 999999999999874 7887764
No 432
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=60.28 E-value=15 Score=31.70 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.5
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCC
Q 029788 5 KIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~ 26 (188)
||+|+|+ |.||..++..|..++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999999 999999988887665
No 433
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=59.63 E-value=15 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=24.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|.|+|.|.+|...+..|..+ +++++-+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE 32 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYE 32 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEE
Confidence 6899999999999999888876 46665554
No 434
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=59.44 E-value=1e+02 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=23.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCce-EEEEeC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~-vv~Ind 35 (188)
+|.|+|.|.+|+.+++.+...+ .+ ++.+..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6889999999999999887764 66 655543
No 435
>PLN02214 cinnamoyl-CoA reductase
Probab=59.43 E-value=17 Score=31.12 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=26.6
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+|.|-|. |.||+.+++.|.++. .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 58999999 999999999999874 77777754
No 436
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=59.23 E-value=15 Score=30.83 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
||-|-|. |-||+.+.+.|.++. +++++.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 8999999 999999999998775 455554
No 437
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=59.09 E-value=18 Score=30.30 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=25.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++.|.|+|.+||.++++|...+--+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 57999999999999999998774245555554
No 438
>PRK06847 hypothetical protein; Provisional
Probab=58.96 E-value=16 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=24.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+.+|.|+|.|..|-.++..|..+ +++++-+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E 34 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVE 34 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEe
Confidence 47899999999999888877765 46655553
No 439
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.94 E-value=20 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=25.6
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHcCCCceEEEE
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~I 33 (188)
|+.++-|.|. |.||+.+++.+.++ +.+++.+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKE-GAKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence 3468999999 99999999998877 4777666
No 440
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=58.86 E-value=21 Score=27.91 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=25.0
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|-|.|. |.||+.+++.|.++. .+++.+...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 578999 999999999999885 667777664
No 441
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=58.82 E-value=48 Score=27.53 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.9
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|. |.+|+.+++.+......+++.+..
T Consensus 151 ~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~ 183 (336)
T cd08252 151 KTLLIIGGAGGVGSIAIQLAKQLTGLTVIATAS 183 (336)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcC
Confidence 47899997 999999988887763277777754
No 442
>PRK07023 short chain dehydrogenase; Provisional
Probab=58.80 E-value=18 Score=28.88 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=25.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+++-|.|. |.||+.+++.+.++ +.+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~-G~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP-GIAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC-CCEEEEEe
Confidence 38999999 99999999999877 46776664
No 443
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=58.77 E-value=16 Score=32.02 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.2
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
||+..|.|+|+|.-|-..++.|.+.. ++++.+-.
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk 34 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEK 34 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEEec
Confidence 56689999999999999999888775 77776643
No 444
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=58.74 E-value=90 Score=26.08 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=22.7
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~In 34 (188)
-+|.|.|.|.+|+.+++.+... ++ .++++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~ 197 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRA-GAAEIVATD 197 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3688999999999998877766 45 555553
No 445
>PRK14851 hypothetical protein; Provisional
Probab=58.61 E-value=7.9 Score=37.05 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.5
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
..||+|+|+|-+|-.++..|...+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G 66 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG 66 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC
Confidence 368999999999999999887653
No 446
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=58.45 E-value=20 Score=30.62 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.4
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
++.+|.|+|.|-+|-..+..|.++. .+|+-+.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G-~~V~vie 34 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLE 34 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CEEEEEe
Confidence 4689999999999998888888775 5777665
No 447
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=58.36 E-value=14 Score=31.51 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=31.1
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCCCC---Chhhhhhhhe
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI---TTDYMTYMFK 48 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~~~---~~~~~a~ll~ 48 (188)
||.|.|. |.+|+.+.+.+. +.++++++..... +++.+..+++
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~ 47 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIR 47 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccChHHHHHHHH
Confidence 5999999 999999988877 5688888864432 4555555554
No 448
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=58.33 E-value=14 Score=30.32 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.4
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCC-CceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRD-DVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~-~~~vv~Ind 35 (188)
||.|.|. |.||+.+++.|.+++ ..+++++..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5889999 999999999988764 478877753
No 449
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=58.29 E-value=62 Score=26.96 Aligned_cols=138 Identities=19% Similarity=0.265 Sum_probs=69.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCC
Q 029788 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 ~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
+|.|.|.|.+|+.+++.+... +++++.+... .+.+...++.++ |- . .+.....+ + .+..
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~-G~~v~~~~~~-~~~~~~~~~~~~----g~-~--~~~~~~~~-~-----------~~~l 225 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQ-GATVVVVGTE-KDEVRLDVAKEL----GA-D--AVNGGEED-L-----------AELV 225 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCEEEEECCC-CCHHHHHHHHHh----CC-c--ccCCCcCC-H-----------HHHH
Confidence 688888899999999988877 4777666321 123322222221 10 0 00000000 0 0000
Q ss_pred CCCCCcCCCccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CcCCCCcEEEcCChhhHhHHHHH
Q 029788 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEH-EYKPELNIVSNASCTTNCLAPLA 163 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~-~~~~~~~ivs~~sCtT~~la~~l 163 (188)
..+ ....++|++++|.|.....+....+++.+.+.+.++..+ +.+ +.+|.. .+.....+..+-.++...+.-++
T Consensus 226 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~---~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 300 (306)
T cd08258 226 NEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-PLA---ASIDVERIIQKELSVIGSRSSTPASWETAL 300 (306)
T ss_pred HHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-CCC---cccCHHHHhhcCcEEEEEecCchHhHHHHH
Confidence 000 112368999999874333445556776555444344433 111 122221 22224456666667777788887
Q ss_pred HHHHH
Q 029788 164 KVIHD 168 (188)
Q Consensus 164 k~l~~ 168 (188)
+.+++
T Consensus 301 ~~~~~ 305 (306)
T cd08258 301 RLLAS 305 (306)
T ss_pred HHHhc
Confidence 77764
No 450
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=58.29 E-value=19 Score=30.72 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=26.7
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+||-|.|. |.||+.+++.|.+++ .+|+++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 68999998 999999999999874 78877654
No 451
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.20 E-value=4 Score=29.37 Aligned_cols=126 Identities=14% Similarity=0.234 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCCCChhhhhhhheeccccccccccceEEeCCCceEECCEEEEEEeecCCCCCCCcCC
Q 029788 13 RIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 92 (188)
Q Consensus 13 rIGr~~lr~l~~~~~~~vv~Ind~~~~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~~~~w~~~ 92 (188)
.||...++.+.... .+++++.. +.+.+.++.++ |. . ..+..++.+ + . +...++-. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~---~~~k~~~~~~~----Ga-~-~~~~~~~~~-~----------~-~~i~~~~~-~~ 57 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDR---SEEKLELAKEL----GA-D-HVIDYSDDD-F----------V-EQIRELTG-GR 57 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEES---SHHHHHHHHHT----TE-S-EEEETTTSS-H----------H-HHHHHHTT-TS
T ss_pred ChHHHHHHHHHHcC-CEEEEEEC---CHHHHHHHHhh----cc-c-ccccccccc-c----------c-cccccccc-cc
Confidence 37888888887775 78777764 34444444432 21 0 011110110 0 0 00111111 13
Q ss_pred CccEEEeecCCccCHhhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CcCCCCcEEEcCChhhHhHHHHHHH
Q 029788 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEH-EYKPELNIVSNASCTTNCLAPLAKV 165 (188)
Q Consensus 93 ~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ps~d~p~~V~gvN~~-~~~~~~~ivs~~sCtT~~la~~lk~ 165 (188)
++|+||||+|.....+.+-..++.|.+-+++..++ +.+ + .+|.. .+..+..+...-.++..-.--+++.
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~-~~~-~--~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 127 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG-GDP-I--SFNLMNLMFKEITIRGSWGGSPEDFQEALQL 127 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS-TSE-E--EEEHHHHHHTTEEEEEESSGGHHHHHHHHHH
T ss_pred cceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC-CCC-C--CCCHHHHHhCCcEEEEEccCCHHHHHHHHHH
Confidence 79999999996555666666776666556665554 111 1 11222 2222446777666664544444443
No 452
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=57.83 E-value=19 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=25.3
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceE-EEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVEL-VAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~v-v~Ind 35 (188)
.+||-|-|. |.||+.+.+.|.+++ .++ +...+
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~ 413 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGR 413 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCC-CeEEeeccc
Confidence 469999999 999999999998764 666 34444
No 453
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=57.83 E-value=11 Score=33.86 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
.+|||+|+|-||-.++-+...+ +++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 7999999999998877666655 5888887
No 454
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=57.38 E-value=19 Score=33.75 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=27.0
Q ss_pred CcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+..||||+|-|..||.+++++.+- +++++.+.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l-G~~Vi~ld 52 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM-GIKVKVLD 52 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 457999999999999999988876 58887774
No 455
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=57.33 E-value=20 Score=28.55 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCcceEEEEcc-CHHHHHHHHHHHcCCCceEEEE
Q 029788 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 1 m~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~I 33 (188)
|| .++.|.|. |.||+.+++.+.++. .+++.+
T Consensus 1 m~-k~ilItGas~giG~~la~~l~~~g-~~v~~~ 32 (248)
T PRK06947 1 MR-KVVLITGASRGIGRATAVLAAARG-WSVGIN 32 (248)
T ss_pred CC-cEEEEeCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 54 68999999 999999999998774 666544
No 456
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.31 E-value=18 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=24.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|.|+|.|..|-.++..|..+ +++++-|.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE 37 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-GASVALVA 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-CCeEEEEe
Confidence 5799999999999988877765 57766664
No 457
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=57.02 E-value=20 Score=30.89 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=27.3
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.++||+|.|..|+..++++.....++-+.|-+.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r 161 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR 161 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 579999999999998888876555777777776
No 458
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.99 E-value=18 Score=31.26 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred cceEEEEccCHHHHHHHHHHHcCC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~ 26 (188)
++||+|+|+|.+|..+...|.+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999999888764
No 459
>PRK08267 short chain dehydrogenase; Provisional
Probab=56.83 E-value=22 Score=28.62 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=25.7
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.||+.+++.|.++. .+++.+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G-~~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG-WRVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC
Confidence 47999999 999999999998874 67776653
No 460
>PRK06184 hypothetical protein; Provisional
Probab=56.77 E-value=18 Score=32.82 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
|.+..|.|+|+|..|-.++..|..+ +++++-+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE 33 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARR-GVSFRLIE 33 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEe
Confidence 6668999999999999888777766 47766664
No 461
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=56.61 E-value=29 Score=29.30 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=22.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~I 33 (188)
-+|.|+|.|.+|+.+++.+... +. .++.+
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~ 206 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKAL-GPANIIVV 206 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEE
Confidence 3689999999999998888766 46 44444
No 462
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.60 E-value=23 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.2
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.||+.+++.|.++. .+++.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 58999999 999999999999874 67777654
No 463
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=56.33 E-value=21 Score=30.31 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=25.9
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHcCC-CceEEEEe
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQRD-DVELVAVN 34 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~~~-~~~vv~In 34 (188)
+..+|-|.|. |.||+.+++.|.++. ..+|+.+.
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3468999999 999999999998763 35666654
No 464
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=56.29 E-value=68 Score=29.64 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=56.4
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCCCC--------ChhhhhhhheeccccccccccceEEeCCCceEECCEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 75 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~~~--------~~~~~a~ll~ydS~~g~~~~~~v~~~~~~~l~i~g~~ 75 (188)
.|+.|-|||-+|....+.|.+. +-.+++|.|..+ |++.+..+ ...++.+. ++++.+ ..-.+
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~~-G~kvvavsD~~G~l~np~Gid~~eL~~~---~~~k~~i~----~f~~~~-~~~~~-- 320 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSEK-GAKVVAVSDSKGVLINPDGIDIEELLDL---ADEKKTIK----SFDGAK-LSYEG-- 320 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHhc-CCEEEEEEcCceeEECCCCCCHHHHHHH---HHhhcccc----cccccc-ccCcc--
Confidence 6899999999999887777654 467778877543 34433222 22222222 111111 11111
Q ss_pred EEEEeecCCCCCCCcCCCccEEEeec-CCccCHhhHHHHHhCCCcEEEE
Q 029788 76 VTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 76 i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~~l~aGak~vvi 123 (188)
.... .| -..|- ..+|+.+=|. ...++.+.+..-.+.|+| .|+
T Consensus 321 ~~~~---~~-~~~~v-~~~DI~vPCA~qn~I~~~nA~~lvak~~~-~Iv 363 (514)
T KOG2250|consen 321 YIAG---LP-PWTLV-EKCDILVPCATQNEITGENAKALVAKGCK-YIV 363 (514)
T ss_pred cccc---Cc-chhhH-hhCcEEeecCccCcccHhhHHHHHhcCCc-EEE
Confidence 0010 11 12233 3588888877 456677888777777775 445
No 465
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=56.06 E-value=49 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=23.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+|.|+|. |.+|+.+++.+... +.+++....
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~ 179 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKL-GYTVVALTG 179 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 6999999 99999998877766 466555543
No 466
>PRK07806 short chain dehydrogenase; Provisional
Probab=55.93 E-value=25 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.||+.+++.|.++. .+++.+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G-~~V~~~~r 38 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG-AHVVVNYR 38 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 67999999 999999999998774 67766543
No 467
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.88 E-value=18 Score=32.51 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=25.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.||+|.|+|+.|+.+++.|..+. .++ .+.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence 48999999999999999998875 554 44554
No 468
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=55.79 E-value=20 Score=31.01 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=24.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+.+|.|+|.|..|-.++..|..+ +++++-|.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE 36 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA-GLSVALVE 36 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCEEEEEe
Confidence 46899999999999988877665 57766554
No 469
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=55.66 E-value=19 Score=30.67 Aligned_cols=31 Identities=39% Similarity=0.459 Sum_probs=24.5
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.||-|-|. |-||+.+++.|.++. .+++.+.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 48999999 999999999999874 44444433
No 470
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=55.65 E-value=23 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=25.1
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++-|.|. |.||+.+++.+.++ +.+++.+..
T Consensus 2 ~vlItGasg~iG~~la~~l~~~-G~~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQ-GHKVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEEC
Confidence 7899999 99999999999877 467776654
No 471
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=55.60 E-value=46 Score=27.58 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=24.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|+|. |.+|+.+++.+... +.+++.+..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~ 178 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAG 178 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc-CCEEEEEeC
Confidence 36889996 99999998888776 477767654
No 472
>PLN02858 fructose-bisphosphate aldolase
Probab=55.55 E-value=17 Score=37.63 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.1
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+||++|+|.+|..+++.|... ++++...|.
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~-G~~V~v~dr 355 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS-NFSVCGYDV 355 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC-CCEEEEEeC
Confidence 6899999999999999999877 477766553
No 473
>PRK09186 flagellin modification protein A; Provisional
Probab=55.51 E-value=25 Score=28.03 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=26.2
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..++-|.|. |.||+.+++.|.++. .+++.+..
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~r 36 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG-GIVIAADI 36 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEec
Confidence 467999999 999999999998874 67766643
No 474
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=55.42 E-value=28 Score=24.53 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=26.3
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
..+|.|+|.|.+|..-++.|.+.+ -++.-+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~ 38 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISP 38 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECC
Confidence 468999999999999999998874 77777765
No 475
>PRK08703 short chain dehydrogenase; Provisional
Probab=55.24 E-value=25 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.8
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.+|+.+++.+.+++ .+++.+..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAG-ATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeC
Confidence 57999999 999999999998874 67766654
No 476
>PRK07102 short chain dehydrogenase; Provisional
Probab=55.12 E-value=25 Score=27.97 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=25.4
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|.|. |.||+.+++.+.++. .+|+.+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r 33 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG-ARLYLAAR 33 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeC
Confidence 47899999 999999999999874 67666643
No 477
>PRK14982 acyl-ACP reductase; Provisional
Probab=54.57 E-value=22 Score=31.10 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=25.0
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCC-ceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~-~~vv~Ind 35 (188)
..+|.|.|+ |.||+.++|.|..+.. -+++.++.
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 368999999 9999999999975422 25555654
No 478
>PRK06500 short chain dehydrogenase; Provisional
Probab=54.55 E-value=25 Score=27.84 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=25.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.++-|.|. |.||+.+++.+.+++ .+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEG-ARVAITG 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEec
Confidence 58999999 999999999999875 6776664
No 479
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.40 E-value=26 Score=27.87 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.7
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcCCCceEEEE
Q 029788 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~I 33 (188)
..++.|.|. |.||+.+++.+.+++ .+++.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~ 34 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG-YDIAVN 34 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE
Confidence 368999999 999999999999884 565544
No 480
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=54.39 E-value=56 Score=27.47 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=22.2
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCc-eEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~-~vv~I 33 (188)
-+|.|.|.|.+|+.+++.+.... . .++.+
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~ 194 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVG-ARHVVIT 194 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC-CCEEEEE
Confidence 36889999999999988777653 5 45555
No 481
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.39 E-value=16 Score=32.93 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
|++..||++|+|.+|+.++....++ ++.|..-|..
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~-G~~VavyNRt 35 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADH-GYTVAVYNRT 35 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhc-CceEEEEeCC
Confidence 6668899999999999998888888 5888888875
No 482
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=54.15 E-value=22 Score=33.54 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.8
Q ss_pred cceEEEEcc-CHHHHHHHHHHHcC-CCceEEEEeC
Q 029788 3 KVKIGINGF-GRIGRLVARVILQR-DDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~-GrIGr~~lr~l~~~-~~~~vv~Ind 35 (188)
.+||.|-|. |.||+.+++.|.++ ++.+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 469999999 99999999999876 3578888764
No 483
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=54.13 E-value=34 Score=28.48 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=24.3
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
-+|.|.|. |.+|+.+++.+... +.+++.+..
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~-G~~v~~~~~ 173 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVG 173 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHc-CCEEEEEeC
Confidence 36889976 99999998877776 477777754
No 484
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=54.13 E-value=22 Score=31.16 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.||-|+|+|-+|+.+++.|.++.--++.-.|.
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 58999999999999999999885223444444
No 485
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=53.98 E-value=21 Score=31.05 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=24.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
+.+|.|+|+|..|-.+...|..+ +++++-+-
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E 32 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLE 32 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEE
Confidence 47999999999999888777655 56665554
No 486
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=53.81 E-value=1.2e+02 Score=26.40 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.5
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~In 34 (188)
-+|.|+|. |.+|+.+++.+... +.+++.+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~-G~~vi~~~ 221 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAG-GGNPVAVV 221 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc-CCeEEEEc
Confidence 37899999 99999998877766 47765554
No 487
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=53.80 E-value=28 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=25.2
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCc-eEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~-~vv~Ind 35 (188)
..||.|+|+|.+|..++..|.... + ++.-|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 468999999999999999988764 5 5555543
No 488
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=53.68 E-value=34 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=25.2
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 ~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.+-|.|. +.||+.+++.+.++..-.++.+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r 33 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSR 33 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeee
Confidence 4778999 999999999999885556666655
No 489
>PLN02686 cinnamoyl-CoA reductase
Probab=53.66 E-value=26 Score=30.46 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=27.3
Q ss_pred CcceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 2 ~~~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
++.+|-|-|. |-||+.+++.|.++ +.+|+++.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r 85 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVD 85 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3468999999 99999999999987 477777654
No 490
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=53.60 E-value=21 Score=31.22 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.0
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEE
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~I 33 (188)
+||+|+|.|..|-.++..|...+.++++-+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~ 30 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLF 30 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence 489999999999988888876643455444
No 491
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.48 E-value=22 Score=30.96 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=24.6
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
...|.|+|+|..|-.++..|..+ +++++-+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE 32 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLD 32 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEc
Confidence 36899999999999888877665 57776654
No 492
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=53.43 E-value=39 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=26.7
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeCC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind~ 36 (188)
.+|-|-|. |.||+.+++.|.+++ .+|+++.+.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence 58999999 999999999999884 777766543
No 493
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=53.36 E-value=23 Score=29.40 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=22.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|.|+|.|..|-.++..|..+ ++++.-+-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E 31 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-GIDVTIIE 31 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-TCEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhc-ccccccch
Confidence 5899999999999998888877 47765554
No 494
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=53.33 E-value=21 Score=31.09 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=24.7
Q ss_pred cceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
+..|.|+|.|.+|-.+.-.|...+ ++++-+-.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~E~ 33 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-LDVTLLER 33 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-CcEEEEcc
Confidence 368999999999998877777664 77666643
No 495
>PRK09135 pteridine reductase; Provisional
Probab=53.22 E-value=28 Score=27.44 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=26.1
Q ss_pred ceEEEEcc-CHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~-GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.++-|-|. |.||+.+.+.|.++ +.+++.+..
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r 38 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA-GYRVAIHYH 38 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcC
Confidence 57999999 99999999999887 477777754
No 496
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=53.16 E-value=23 Score=30.83 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCcceEEEEccCHHHHHHHHHHHcC-CCceEEEEeC
Q 029788 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVND 35 (188)
Q Consensus 1 m~~~~vaInG~GrIGr~~lr~l~~~-~~~~vv~Ind 35 (188)
|+ ..|.|+|.|-+|-.++..|.++ |+.+|+-+..
T Consensus 1 ~~-~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~ 35 (393)
T PRK11728 1 AM-YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEK 35 (393)
T ss_pred CC-ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 54 7999999999999999888765 3466665643
No 497
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=53.11 E-value=23 Score=30.35 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=26.6
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEeC
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~Ind 35 (188)
.|||.+|+|..|..+.+.|.+.. +++..-|.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r 31 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNR 31 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeC
Confidence 38999999999999999999884 87766665
No 498
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=53.07 E-value=23 Score=30.70 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.5
Q ss_pred ceEEEEccCHHHHHHHHHHHcCCCceEEEEe
Q 029788 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~~vaInG~GrIGr~~lr~l~~~~~~~vv~In 34 (188)
.+|.|+|.|..|-.++.+|..+ +++++-+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E 31 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFE 31 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEec
Confidence 6899999999999988877655 46655553
No 499
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=53.02 E-value=14 Score=32.96 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=29.3
Q ss_pred EEcc-CHHHHHHHHHHHcCC-CceEEEEeCCCCChhhhhhhh
Q 029788 8 INGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMF 47 (188)
Q Consensus 8 InG~-GrIGr~~lr~l~~~~-~~~vv~Ind~~~~~~~~a~ll 47 (188)
|.|. |-||+..++.+..+| +|+|+++..- .+.+.+....
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~-~n~~~L~~q~ 41 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTAN-YNIELLEQQI 41 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECC-CCHHHHHHHH
Confidence 5799 999999999988765 5999999863 3555444433
No 500
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=53.01 E-value=97 Score=27.16 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=22.7
Q ss_pred CCccEEEeecCCccCHhhHHHHHhCCCcEEEEeC
Q 029788 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 92 ~~vdiV~e~tg~~~~~~~~~~~l~aGak~vvis~ 125 (188)
.++|+||+|+|...+.+.+-..++.+-+.+++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 3689999999865555556666764555555544
Done!