Query 029789
Match_columns 188
No_of_seqs 14 out of 16
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 05:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029789.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029789hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pd0a4 d.109.2.1 (A:754-926) 39.0 5.4 0.00039 29.1 1.4 16 125-140 158-173 (173)
2 d1lrza1 a.2.7.4 (A:245-309) Me 33.1 40 0.0029 21.7 5.0 53 127-185 1-54 (65)
3 d2bbha1 d.328.1.1 (A:13-244) M 22.2 51 0.0037 23.5 4.4 45 125-182 167-211 (232)
4 d1nj1a2 d.68.5.1 (A:411-481) C 20.5 21 0.0015 23.0 1.7 17 121-137 1-17 (71)
5 d1ez3a_ a.47.2.1 (A:) Syntaxin 17.8 84 0.0061 20.8 4.5 52 134-185 15-69 (124)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 16.1 58 0.0042 21.8 3.3 32 2-33 88-119 (133)
7 d1af7a1 a.58.1.1 (A:11-91) Che 16.0 34 0.0025 21.4 1.9 28 122-151 51-78 (81)
8 d1hc7a3 d.68.5.1 (A:404-477) C 13.6 28 0.002 22.6 0.9 36 122-157 2-45 (74)
9 d1aiea_ a.53.1.1 (A:) p53 tetr 12.0 62 0.0045 18.5 2.0 20 8-31 10-29 (31)
10 d1r8ia_ a.8.7.1 (A:) Typo IV s 10.8 90 0.0065 22.0 3.1 32 2-33 117-148 (187)
No 1
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.97 E-value=5.4 Score=29.09 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=14.0
Q ss_pred cchHHHHHHHHhhhhh
Q 029789 125 SSFSGFLENLDQQLND 140 (188)
Q Consensus 125 SSY~dFlEhid~qL~~ 140 (188)
.||.+||.||-.|+++
T Consensus 158 ~SY~efL~~lh~~I~~ 173 (173)
T d1pd0a4 158 ESYREFLQIMKARISK 173 (173)
T ss_dssp CCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHhcC
Confidence 6999999999998763
No 2
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=33.07 E-value=40 Score=21.74 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHH-HHHHHHHHHHHHHHHhh
Q 029789 127 FSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQ-QAMELLESVRGIRGRIA 185 (188)
Q Consensus 127 Y~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Q-q~~eiLe~I~~iReRIa 185 (188)
|++|+.+|..+...|+..|..+- .+-+..|.|.|-+ |.-++-.-+.....||.
T Consensus 1 F~eYl~~L~~~~~~L~~~i~k~~------~~leknP~skK~~nk~~el~~Q~~s~~~ki~ 54 (65)
T d1lrza1 1 FDEYIKELNEERDILNKDLNKAL------KDIEKRPENKKAHNKRDNLQQQLDANEQKIE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH------HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999886543 3445677777754 34444444444444443
No 3
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.22 E-value=51 Score=23.53 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=25.0
Q ss_pred cchHHHHHHHHhhhhhhHHHHhhhhhhcceeecCCCCCchhhHHHHHHHHHHHHHHHH
Q 029789 125 SSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRG 182 (188)
Q Consensus 125 SSY~dFlEhid~qL~~iE~Elv~~ln~s~l~l~~~ekpkN~K~Qq~~eiLe~I~~iRe 182 (188)
-+|..+++.|+.++..||..+- .+|.+..+++++.+=..+...|.
T Consensus 167 d~y~~~l~~l~~~id~lE~~v~-------------~~~~~~~l~~i~~lrr~l~~lrr 211 (232)
T d2bbha1 167 DDYFVLLEKIDDEIDVLEEEVL-------------ERPEKETVQRTHQLKRNLVELRK 211 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------------hCCcHHHHHHHHHHHHHHHHHHH
Confidence 4577777888888888776532 23445556666665555555544
No 4
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=20.52 E-value=21 Score=22.97 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=14.6
Q ss_pred cccccchHHHHHHHHhh
Q 029789 121 WREISSFSGFLENLDQQ 137 (188)
Q Consensus 121 l~~iSSY~dFlEhid~q 137 (188)
++++.+||+|.+.|+++
T Consensus 1 I~~~~t~eE~k~~l~~~ 17 (71)
T d1nj1a2 1 IREAETLEEASRIVDEK 17 (71)
T ss_dssp EEECSSHHHHHHHHHHH
T ss_pred CeecCCHHHHHHHHHhC
Confidence 46789999999999875
No 5
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.78 E-value=84 Score=20.78 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHhhhhhhHHHHhhhhhhcceeec--CCCCCchhhHHH-HHHHHHHHHHHHHHhh
Q 029789 134 LDQQLNDIESELVTILNVSSLILD--NKEKPKNVKVQQ-AMELLESVRGIRGRIA 185 (188)
Q Consensus 134 id~qL~~iE~Elv~~ln~s~l~l~--~~ekpkN~K~Qq-~~eiLe~I~~iReRIa 185 (188)
|...+..|+..+..+=+.....+. ..++-...++.+ +.++...-+.+|.||.
T Consensus 15 Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk 69 (124)
T d1ez3a_ 15 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLK 69 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444333333 233333444543 3345555566666654
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.09 E-value=58 Score=21.79 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.9
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhhh
Q 029789 2 QAMEKSKNRIELLVELCTKLNGAISVKETQLI 33 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qLI 33 (188)
+|++-.+.||+.|.+.-.++.+.|.-.+.++-
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~ 119 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999988887776653
No 7
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=16.01 E-value=34 Score=21.42 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=19.9
Q ss_pred ccccchHHHHHHHHhhhhhhHHHHhhhhhh
Q 029789 122 REISSFSGFLENLDQQLNDIESELVTILNV 151 (188)
Q Consensus 122 ~~iSSY~dFlEhid~qL~~iE~Elv~~ln~ 151 (188)
.++.+|++|+++|.. +.=+.|+..++|.
T Consensus 51 ~g~~s~~~Y~~~L~~--~~~~~e~~~li~~ 78 (81)
T d1af7a1 51 LGLDDFGRYLSMLEA--NQNSAEWQAFINA 78 (81)
T ss_dssp HTCCCHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred hCCCCHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 467889999999875 3335677777663
No 8
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]}
Probab=13.64 E-value=28 Score=22.63 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=22.1
Q ss_pred ccccchHHHHHHHHhhh--------hhhHHHHhhhhhhcceeec
Q 029789 122 REISSFSGFLENLDQQL--------NDIESELVTILNVSSLILD 157 (188)
Q Consensus 122 ~~iSSY~dFlEhid~qL--------~~iE~Elv~~ln~s~l~l~ 157 (188)
+.+++||+|.++|+.-+ .+-|.+|..-+....+-..
T Consensus 2 ~~v~s~defk~~l~~Gfv~~~wcg~~ecE~~IKeet~at~rciP 45 (74)
T d1hc7a3 2 RKVDTYEAFKEAVQEGFALAFHCGDKACERLIQEETTATTRCVP 45 (74)
T ss_dssp EECSSHHHHHHHTTTSEEEECCCCCHHHHHHHHHHHCCEEEEEE
T ss_pred eEccCHHHHHHHHHCCEEEEEecCCHHHHHHHHHHhCcEEEEEE
Confidence 56899999999985432 1234455545555555443
No 9
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.02 E-value=62 Score=18.54 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhh
Q 029789 8 KNRIELLVELCTKLNGAISVKETQ 31 (188)
Q Consensus 8 K~RIElLD~LS~KlsEaISvKe~q 31 (188)
..|.|++.+ ||||.-+|.-|
T Consensus 10 r~rfemfre----lnealelkdaq 29 (31)
T d1aiea_ 10 RERFEMFRE----LNEALELKDAQ 29 (31)
T ss_dssp HHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHhhhhcc
Confidence 467887765 68999998765
No 10
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=10.80 E-value=90 Score=22.04 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=27.3
Q ss_pred hhhHhhHHHHHHHHHHHHhhhhhhchhhhhhh
Q 029789 2 QAMEKSKNRIELLVELCTKLNGAISVKETQLI 33 (188)
Q Consensus 2 qALE~sK~RIElLD~LS~KlsEaISvKe~qLI 33 (188)
++.+.+.+|++=++.|..+|+-+=-.|+.+=+
T Consensus 117 ~~y~~a~~rl~~i~~L~~~I~~a~D~K~~~DL 148 (187)
T d1r8ia_ 117 KAYNNQMQELSDMQALTEQIKSTPDLKSIADL 148 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHH
Confidence 46788999999999999999998888887633
Done!