BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029790
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
           Nicotinate Phosphoribosyltransferase, New York
           Structural Genomics Consortium
          Length = 494

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%)

Query: 3   QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIKLSEDVSKV 57
              L  +M+  ++D +G+GT L+T Y Q ALG VFKLV I  +       IKLS +  KV
Sbjct: 298 NTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKV 357

Query: 58  SIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQK 112
           + P KK+ +R+  K     EG    D +T  NE  P+  E I   HP +     YV   +
Sbjct: 358 TTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTFINKYVRDFE 412

Query: 113 VEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYD 172
              +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +S   ++
Sbjct: 413 ARPVLQDIFV--EGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTDCWN 470


>pdb|3OS4|A Chain A, The Crystal Structure Of Nicotinate
           Phosphoribosyltransferase From Yersinia Pestis
 pdb|3OS4|B Chain B, The Crystal Structure Of Nicotinate
           Phosphoribosyltransferase From Yersinia Pestis
          Length = 407

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 18  FGIGTYLVTCYAQAA--LGCVFKLVEINKQPRIKLSE 52
           FGIGT L TC       L  V KLVE N +P  KLS+
Sbjct: 337 FGIGTRL-TCDIPDVKPLNIVIKLVECNDKPVAKLSD 372


>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
           Domain Of L3mbtl3 And Unc1215
 pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
           Domain Of L3mbtl3 And Unc1215
          Length = 332

 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 11  KGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQP 46
           KG++ + F   TYL TC AQAA   +F+   I   P
Sbjct: 106 KGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIP 141


>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
          Length = 324

 Score = 27.7 bits (60), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 11  KGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQP 46
           KG++ + F   TYL TC AQAA   +F+   I   P
Sbjct: 106 KGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIP 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,867,478
Number of Sequences: 62578
Number of extensions: 234116
Number of successful extensions: 483
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)