Query 029790
Match_columns 188
No_of_seqs 140 out of 1005
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 6.8E-54 1.5E-58 397.0 18.0 185 2-188 359-545 (545)
2 PRK09243 nicotinate phosphorib 100.0 1.2E-42 2.6E-47 318.1 12.6 163 3-170 298-464 (464)
3 TIGR01513 NAPRTase_put putativ 100.0 2.2E-41 4.7E-46 308.0 14.0 156 2-170 288-443 (443)
4 PRK12484 nicotinate phosphorib 100.0 8.2E-41 1.8E-45 304.3 15.8 152 2-180 290-441 (443)
5 PRK09198 putative nicotinate p 99.8 2E-20 4.4E-25 171.2 9.9 109 3-145 341-462 (463)
6 KOG2511 Nicotinic acid phospho 99.8 1.3E-20 2.8E-25 165.1 3.1 108 3-124 313-420 (420)
7 COG1488 PncB Nicotinic acid ph 99.8 4.4E-20 9.5E-25 167.0 4.9 98 4-143 306-405 (405)
8 PHA02594 nadV nicotinamide pho 99.8 2.8E-19 6E-24 163.8 9.8 110 3-145 346-469 (470)
9 PRK05321 nicotinate phosphorib 99.7 1.2E-16 2.6E-21 144.4 5.9 63 2-64 318-383 (400)
10 TIGR01514 NAPRTase nicotinate 99.6 1.4E-16 3E-21 143.6 5.8 57 2-58 318-377 (394)
11 PF04095 NAPRTase: Nicotinate 99.4 7.1E-15 1.5E-19 125.0 -1.6 69 2-70 159-242 (245)
12 cd01569 PBEF_like pre-B-cell c 98.9 8.7E-10 1.9E-14 100.0 5.5 44 7-50 346-395 (407)
13 PRK07188 nicotinate phosphorib 98.9 9.6E-10 2.1E-14 98.3 5.3 46 3-52 292-337 (352)
14 PRK08662 nicotinate phosphorib 98.5 1.5E-07 3.2E-12 84.0 4.4 57 3-65 273-329 (343)
15 cd01401 PncB_like Nicotinate p 97.0 0.00037 7.9E-09 63.2 2.3 27 2-28 315-343 (377)
16 COG3693 XynA Beta-1,4-xylanase 68.4 2.8 6.1E-05 37.6 1.5 24 4-27 209-232 (345)
17 PF00331 Glyco_hydro_10: Glyco 44.1 8.7 0.00019 33.8 0.4 28 2-29 191-218 (320)
18 smart00633 Glyco_10 Glycosyl h 40.0 15 0.00033 30.9 1.3 25 2-26 139-163 (254)
19 COG2846 Regulator of cell morp 39.3 24 0.00052 29.8 2.2 41 139-179 85-129 (221)
20 cd01452 VWA_26S_proteasome_sub 38.7 22 0.00048 29.2 2.0 22 2-23 126-147 (187)
21 cd05009 SIS_GlmS_GlmD_2 SIS (S 38.5 3.8 8.2E-05 31.0 -2.5 43 3-50 4-46 (153)
22 PRK02655 psbI photosystem II r 36.3 19 0.00042 22.2 0.9 14 50-65 24-37 (38)
23 TIGR00441 gmhA phosphoheptose 34.9 21 0.00046 27.7 1.3 27 3-29 2-28 (154)
24 KOG2968 Predicted esterase of 29.8 25 0.00055 35.9 1.1 22 3-25 856-877 (1158)
25 KOG3361 Iron binding protein i 29.4 31 0.00068 27.3 1.3 19 19-40 52-70 (157)
26 PF08799 PRP4: pre-mRNA proces 28.0 25 0.00055 20.6 0.5 16 5-20 2-17 (30)
27 CHL00024 psbI photosystem II p 27.1 37 0.0008 20.7 1.1 13 50-64 24-36 (36)
28 PF04722 Ssu72: Ssu72-like pro 26.2 48 0.001 27.7 2.0 26 6-31 20-48 (195)
29 PRK13936 phosphoheptose isomer 25.4 36 0.00077 27.7 1.1 26 3-28 34-59 (197)
30 PRK07807 inosine 5-monophospha 21.0 22 0.00048 33.4 -1.1 77 4-86 281-368 (479)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=6.8e-54 Score=396.97 Aligned_cols=185 Identities=83% Similarity=1.409 Sum_probs=175.4
Q ss_pred chhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceEEEeecCCCCeeeeEEe
Q 029790 2 FQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMT 81 (188)
Q Consensus 2 ~~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~KqvyR~~~~~g~~~~D~i~ 81 (188)
+++|.+|.++|++||+|||||+||||.++|+|||||||||++|+|+||+|++++|.|+||+|||||+||++|++.+|+|+
T Consensus 359 e~~i~~L~~~g~~id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~ 438 (545)
T PLN02885 359 EETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMT 438 (545)
T ss_pred HHHHHHHHHcCCCccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999877999999999
Q ss_pred cCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecC--CcccCCCCCCCHHHHHHHHHHHHhhCChhhhhccCC
Q 029790 82 GENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPG--SSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNP 159 (188)
Q Consensus 82 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~--Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~rl~~p 159 (188)
+.+|+.+..++.+.|+||.++|+++.+.++.+++||++||++ |+++ ++.|+|++||+|+++||++|||+++|+.||
T Consensus 439 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g~~~--~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p 516 (545)
T PLN02885 439 GENEPPPKVGERILCRHPFNESKRAYVVPQRVEELLKCYWDGSSGKPR--EELPSLKEIRERCMKQLERMRPDHMRRLNP 516 (545)
T ss_pred cCCCCCCCCCCceEEeCCccchheeeeccccHHhhhHHHeECCCCcCc--CCCCCHHHHHHHHHHHHhhCCHHHHhccCC
Confidence 999975667889999999999999999999999999999999 6554 589999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHhccCCCCCCC
Q 029790 160 TPYKVSVSAKLYDFIHFLWLNEAPVGELQ 188 (188)
Q Consensus 160 ~~Y~V~lS~~L~~l~~~l~~~~~~~~~~~ 188 (188)
++|+|++|++|++++++||+++++++|++
T Consensus 517 ~~y~V~~s~~l~~~~~~l~~~~~~~~~~~ 545 (545)
T PLN02885 517 TPYKVSVSAKLYDFIHFLWLNEAPVGELQ 545 (545)
T ss_pred ccceeccCHHHHHHHHHHHHhcCccccCC
Confidence 99999999999999999999988888764
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=1.2e-42 Score=318.05 Aligned_cols=163 Identities=34% Similarity=0.504 Sum_probs=154.3
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCc----ceeeecCCCCccCCCCcceEEEeecCCCCeeee
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ----PRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVD 78 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~----P~~K~S~~~~K~t~PG~KqvyR~~~~~g~~~~D 78 (188)
++|.+|..+|++||+|||||+|+||.++|+||+|||||+++|. |++|+|++++|.|+||+|+|||+|+.+|.+.+|
T Consensus 298 ~~i~~l~~~g~~id~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R~~~~~~~~~~d 377 (464)
T PRK09243 298 YTIASLKLQGAPIDGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYRIYDKGGKAEAD 377 (464)
T ss_pred HHHHHHHhCCCCceEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEEEEcCCCCcceE
Confidence 6899999999999999999999999999999999999999985 999999999999999999999999877899999
Q ss_pred EEecCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHHHhhCChhhhhccC
Q 029790 79 IMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLN 158 (188)
Q Consensus 79 ~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~rl~~ 158 (188)
+|++.+|+ + ++++.|+||.++|++..+.++.+++||+++|++|+++. +.|++++||+|+++||++||++++|+.|
T Consensus 378 ~i~~~~e~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~G~~~~--~~~~l~~~r~~~~~~l~~l~~~~~~l~~ 452 (464)
T PRK09243 378 VITLADEE-E--EEPLKMFHPVHTYKSKTVKNFDAEPLLVPVMENGKRVY--ELPSLEEIRAYAAAQLASLPEEYKRLLN 452 (464)
T ss_pred EEeccCCC-c--cccceeecccchhhhhcccccchhhhhHHHhcCCEEcC--CCCCHHHHHHHHHHHHHhCCHHHhcccC
Confidence 99999885 3 67788999999999999999899999999999999974 7899999999999999999999999999
Q ss_pred CcccccccCHHH
Q 029790 159 PTPYKVSVSAKL 170 (188)
Q Consensus 159 p~~Y~V~lS~~L 170 (188)
|++|+|.+|++|
T Consensus 453 p~~y~v~~s~~l 464 (464)
T PRK09243 453 PHAYPVDLSQAL 464 (464)
T ss_pred CCceeEEecCCC
Confidence 999999999875
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=2.2e-41 Score=308.00 Aligned_cols=156 Identities=36% Similarity=0.555 Sum_probs=143.2
Q ss_pred chhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceEEEeecCCCCeeeeEEe
Q 029790 2 FQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMT 81 (188)
Q Consensus 2 ~~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~KqvyR~~~~~g~~~~D~i~ 81 (188)
+++|.+|.++|++||+|||||+|+||.++|+|++|||||+++|+|++|+|++++|.|+||+|||||+|+.+|.+..|+|+
T Consensus 288 e~~i~~l~~~g~~~d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~~~~g~~~~d~i~ 367 (443)
T TIGR01513 288 ENSIAALKAEGAPIDVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELT 367 (443)
T ss_pred HHHHHHHHHCCCceeEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEeCCCCCeeeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999867889999999
Q ss_pred cCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHHHhhCChhhhhccCCcc
Q 029790 82 GENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTP 161 (188)
Q Consensus 82 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~rl~~p~~ 161 (188)
+.+|+ +..+++..|+||. ...++||++||++|+++. +.||+++||+|+++||++||++++|+.||++
T Consensus 368 ~~~e~-~~~~~~~~~~~~~----------~~~~~ll~~v~~~G~~~~--~~~~l~eir~~~~~~l~~l~~~~~rl~~p~~ 434 (443)
T TIGR01513 368 LADEP-IEDLNQEKCTPVF----------APVEPLLRLVMKNGQRVR--PLPSLAEIRARAREQLSKLPPEYLRLLNPHV 434 (443)
T ss_pred ecCCC-CccccceeeecCC----------cchhcchhheeECCEEeC--CCCCHHHHHHHHHHHHHhCCHHHhcccCCcc
Confidence 99986 4455667788875 346899999999999974 6789999999999999999999999999999
Q ss_pred cccccCHHH
Q 029790 162 YKVSVSAKL 170 (188)
Q Consensus 162 Y~V~lS~~L 170 (188)
|+|.+|++|
T Consensus 435 y~v~~s~~l 443 (443)
T TIGR01513 435 YPVSLSPRL 443 (443)
T ss_pred ceeeccCCC
Confidence 999999875
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.2e-41 Score=304.33 Aligned_cols=152 Identities=28% Similarity=0.392 Sum_probs=139.4
Q ss_pred chhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceEEEeecCCCCeeeeEEe
Q 029790 2 FQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMT 81 (188)
Q Consensus 2 ~~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~KqvyR~~~~~g~~~~D~i~ 81 (188)
+++|.+|.++|++||+|||||+|+||.++|+|++|||||+++|.|++|+|. +|.|+||+|||||+|+. +.+.+|+|+
T Consensus 290 e~~i~~l~~~g~~id~fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~~-~~~~~d~i~ 366 (443)
T PRK12484 290 EYRIAALLAAGAPIDGFGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYEH-GTACGDVIG 366 (443)
T ss_pred HHHHHHHHHCCCcCeEEeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcCC-CCceeEEEE
Confidence 368999999999999999999999999999999999999999999999987 99999999999999974 447889999
Q ss_pred cCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHHHhhCChhhhhccCCcc
Q 029790 82 GENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTP 161 (188)
Q Consensus 82 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~rl~~p~~ 161 (188)
+.+|+.+ .+ .++||++||++|+++. +.|++++||+|++++|++||++++|+.||++
T Consensus 367 ~~~e~~~-~~---------------------~~~ll~~v~~~G~~~~--~~~~l~eir~~~~~~l~~l~~~~~~l~~p~~ 422 (443)
T PRK12484 367 LHTENIP-DG---------------------REPLLVPVMTNGRRIQ--HAPTLDGARDWCEAQLAALPPEARRLVDPVA 422 (443)
T ss_pred ecCCCCC-Cc---------------------ccchhhhheECCEEeC--CCCCHHHHHHHHHHHHHhCCHHHHhccCCcc
Confidence 9998533 22 2689999999999863 6889999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHhc
Q 029790 162 YKVSVSAKLYDFIHFLWLN 180 (188)
Q Consensus 162 Y~V~lS~~L~~l~~~l~~~ 180 (188)
|+|.+|++|++++++|+++
T Consensus 423 y~v~~s~~l~~~~~~l~~~ 441 (443)
T PRK12484 423 VSVTLSGELARLRHADTAE 441 (443)
T ss_pred ceeeeCHHHHHHHHHHHHh
Confidence 9999999999999999964
No 5
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.83 E-value=2e-20 Score=171.17 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=89.6
Q ss_pred hhHHH----HHhCCCeee--EEeecCccccCCCCCccceEEEEEEE--CC--cceee---ecCCCCccCCCCcceEEEee
Q 029790 3 QPFLF----FEMKGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NK--QPRIK---LSEDVSKVSIPCKKRSYRLY 69 (188)
Q Consensus 3 ~~I~~----L~~~Ga~ID--~fGVGT~LvT~~~~P~lg~VYKLvei--~g--~P~~K---~S~~~~K~t~PG~KqvyR~~ 69 (188)
++|++ |+++|++|| +|||||+|+|+.++|++|+|||||++ +| +|++| .|. +|.|.||+|+|||.
T Consensus 341 ~~i~~il~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~--gK~S~~G~k~v~r~- 417 (463)
T PRK09198 341 DSIEAILEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQ--GKKSKKGRLKLIKD- 417 (463)
T ss_pred HHHHHHHHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCC--CCcCccceeEEEEc-
Confidence 45666 789999999 99999999999999999999999965 66 49998 565 89999999999998
Q ss_pred cCCCCeeeeEEecCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHH
Q 029790 70 GKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ 145 (188)
Q Consensus 70 ~~~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~ 145 (188)
+|.. |.+.+.++.. . .++||++||+||+++. ..+|++||+|+.++
T Consensus 418 --~~~~--~~v~~~~~~~--~----------------------~~~lL~~v~~~G~l~~---~~~l~eiR~r~~~~ 462 (463)
T PRK09198 418 --NGEY--RTVDLDEAGD--E----------------------NDDLLQTVFENGKLLV---EYSLAEIRARLHAA 462 (463)
T ss_pred --CCcc--eEEeccccCC--C----------------------ccchhhhheeCCEECC---CCCHHHHHHHHhhc
Confidence 3433 6776665531 1 2679999999999874 46799999999764
No 6
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.3e-20 Score=165.07 Aligned_cols=108 Identities=63% Similarity=0.984 Sum_probs=99.2
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceEEEeecCCCCeeeeEEec
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTG 82 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~KqvyR~~~~~g~~~~D~i~l 82 (188)
.+|..|.+||+.+|+|||||+|+|| -|+ +.+| ||+|+|+.|.|.||.|.+||++.++|.++.|+..+
T Consensus 313 ~ti~~lnkq~~e~~aFGIGTnl~t~-~q~-----------~sqP-iKLseDvtkvSiP~~K~~~RLfg~eG~plvdi~~~ 379 (420)
T KOG2511|consen 313 ITIDALNKQGGEVDAFGIGTNLTTD-FQK-----------NSQP-IKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDL 379 (420)
T ss_pred HHHHHHHhcCCceeeeccccccccc-ccc-----------ccCC-cccccccceeccccchhheehhccCCchhhhHhhc
Confidence 4789999999999999999999999 566 6789 99999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCC
Q 029790 83 ENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGS 124 (188)
Q Consensus 83 ~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~G 124 (188)
++|++|..|+.+.|+||+. .++....|..+++|++.+++.|
T Consensus 380 ~~ep~p~~gq~l~~khp~~-~~~~~vip~~ve~llk~~w~~~ 420 (420)
T KOG2511|consen 380 ENEPPPDPGQVLRVKHPLN-SKRAYVIPQRVEELLKCYWRAG 420 (420)
T ss_pred cCCCCCCCCceEEeecccc-ccccccchhhhHHHHHHHhccC
Confidence 9999999999999999999 6667777888999998887754
No 7
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.79 E-value=4.4e-20 Score=166.97 Aligned_cols=98 Identities=35% Similarity=0.435 Sum_probs=80.9
Q ss_pred hHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceEEEeecC--CCCeeeeEEe
Q 029790 4 PFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK--EGYPLVDIMT 81 (188)
Q Consensus 4 ~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~KqvyR~~~~--~g~~~~D~i~ 81 (188)
.|+.|+.+|+++|+|||||+|+|+.++|++++||||||++|+|++|+|++ ||.|++||+++. .++..+|
T Consensus 306 ~i~~l~~~g~~~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~------Pgkk~~~r~~~~~~~~~~~~~--- 376 (405)
T COG1488 306 IIALLRAFGARNDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKN------PGKKQVYRSAFVRELLVVFGD--- 376 (405)
T ss_pred HHHHHHHhCCCccEeccchhhccCCCCCcceeEEEEEEECCccceeecCC------Cccceeecchhhhhhheeccc---
Confidence 57888889999999999999999999999999999999999999999874 999999999751 1222111
Q ss_pred cCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHH
Q 029790 82 GENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCI 143 (188)
Q Consensus 82 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~ 143 (188)
+. ..++||++||++| +++ + +|.+||+|+.
T Consensus 377 ---~~-------------------------~~~~l~~~~~~~G-~~~--~--~l~~ir~~~~ 405 (405)
T COG1488 377 ---EI-------------------------TYEPLLVKVFENG-LLY--D--SLDEIRERAL 405 (405)
T ss_pred ---cc-------------------------cchhHHHHHHhCC-eec--C--CHHHHHHhhC
Confidence 10 0178999999999 654 3 9999999973
No 8
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.79 E-value=2.8e-19 Score=163.81 Aligned_cols=110 Identities=25% Similarity=0.268 Sum_probs=84.4
Q ss_pred hhHHH----HHhCC--CeeeEEeecCccccCCCCCccceEEEEEEE--CCc--ceeee---cCCCCccCCCCcceEEEee
Q 029790 3 QPFLF----FEMKG--HEVDAFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKL---SEDVSKVSIPCKKRSYRLY 69 (188)
Q Consensus 3 ~~I~~----L~~~G--a~ID~fGVGT~LvT~~~~P~lg~VYKLvei--~g~--P~~K~---S~~~~K~t~PG~KqvyR~~ 69 (188)
++|++ |+++| +++|+|||||+|+|+.++|++||||||+++ +|+ |++|- |+ +|.|.||+|+ |.+
T Consensus 346 ~~i~~il~~L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~--gK~S~~Gr~~--~~~ 421 (470)
T PHA02594 346 ERINRILTRMKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDE--GKKSKKGRLA--RVK 421 (470)
T ss_pred HHHHHHHHHHHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCC--CCccccceeE--EEE
Confidence 35666 67899 666699999999999999999999999988 465 66853 55 8999999999 555
Q ss_pred cCCCCe-eeeEEecCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHH
Q 029790 70 GKEGYP-LVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ 145 (188)
Q Consensus 70 ~~~g~~-~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~ 145 (188)
+ +|.+ ..|.+ ..|. + .+ .++||++||+||+++. + ++|++||+|++++
T Consensus 422 ~-~g~~~~~~~~--~~e~-~-~~---------------------~~~lL~~v~~~G~~~~--~-~sl~eiR~r~~~~ 469 (470)
T PHA02594 422 D-GGSFKTVDGL--EEQS-E-AD---------------------LNDALVTYFDDGKLVR--Y-QSLAEIRERSDIQ 469 (470)
T ss_pred c-CCceeEeeec--cccc-c-cc---------------------ccchhheeeECCEECC--C-CCHHHHHHHHHhc
Confidence 5 5654 34544 3332 1 11 2579999999999973 3 8999999999875
No 9
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.65 E-value=1.2e-16 Score=144.36 Aligned_cols=63 Identities=33% Similarity=0.366 Sum_probs=56.9
Q ss_pred chhHHHHHhC--CCeeeEEeecCccccCC-CCCccceEEEEEEECCcceeeecCCCCccCCCCcce
Q 029790 2 FQPFLFFEMK--GHEVDAFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKR 64 (188)
Q Consensus 2 ~~~I~~L~~~--Ga~ID~fGVGT~LvT~~-~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~Kq 64 (188)
+++|.+|.++ |..+|+|||||+|+|+. ++|+||+|||||+++|+|+||+|++++|.|+|.-.-
T Consensus 318 e~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~~~~ 383 (400)
T PRK05321 318 FDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDDPEF 383 (400)
T ss_pred HHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCCHHH
Confidence 4689999887 66667999999999999 899999999999999999999999999999887543
No 10
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.65 E-value=1.4e-16 Score=143.57 Aligned_cols=57 Identities=35% Similarity=0.465 Sum_probs=54.7
Q ss_pred chhHHHHHh--CCCeeeEEeecCccccCCC-CCccceEEEEEEECCcceeeecCCCCccC
Q 029790 2 FQPFLFFEM--KGHEVDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVS 58 (188)
Q Consensus 2 ~~~I~~L~~--~Ga~ID~fGVGT~LvT~~~-~P~lg~VYKLvei~g~P~~K~S~~~~K~t 58 (188)
+++|.+|.+ +|+++|+|||||+|+|+.+ +|+|++|||||+++|+|++|+|++++|.|
T Consensus 318 e~~i~~L~~~~~g~~~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t 377 (394)
T TIGR01514 318 VEKAIELSHYFKGRVKASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTM 377 (394)
T ss_pred HHHHHHHHHHhcCCCceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccC
Confidence 468999999 9999999999999999998 99999999999999999999999999998
No 11
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.44 E-value=7.1e-15 Score=125.01 Aligned_cols=69 Identities=42% Similarity=0.473 Sum_probs=57.0
Q ss_pred chhHHHHHhCCCe---eeEEeecCccccCCCC---------CccceEEEEEEECCcceeeecCCCCccCC---CCcceEE
Q 029790 2 FQPFLFFEMKGHE---VDAFGIGTYLVTCYAQ---------AALGCVFKLVEINKQPRIKLSEDVSKVSI---PCKKRSY 66 (188)
Q Consensus 2 ~~~I~~L~~~Ga~---ID~fGVGT~LvT~~~~---------P~lg~VYKLvei~g~P~~K~S~~~~K~t~---PG~Kqvy 66 (188)
.++|.+|.+++++ +|+|||||+|+||.++ |++++||||++++|+|++|+|++++|.|. ++.+.++
T Consensus 159 e~~i~~l~~~~~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~P~~K~S~~~~K~t~~~~~~~~~~k 238 (245)
T PF04095_consen 159 EEKIEELLEQGAEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQPVIKLSDDSEKGTCGDPEGIKYLK 238 (245)
T ss_dssp HHHHHHHHHHHCCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTEETTBGGSSTTGSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCCCCccCCCCCCCCcCCCHHHHHHHH
Confidence 3689999999999 9999999999999999 66666666778889999999999999992 3455555
Q ss_pred Eeec
Q 029790 67 RLYG 70 (188)
Q Consensus 67 R~~~ 70 (188)
|+|.
T Consensus 239 ~vf~ 242 (245)
T PF04095_consen 239 RVFE 242 (245)
T ss_dssp HHEC
T ss_pred HHhC
Confidence 5554
No 12
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=98.95 E-value=8.7e-10 Score=99.98 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=40.0
Q ss_pred HHHhCCCeee--EEeecCccccCCCCCccceEEEEEEE--CCc--ceeee
Q 029790 7 FFEMKGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKL 50 (188)
Q Consensus 7 ~L~~~Ga~ID--~fGVGT~LvT~~~~P~lg~VYKLvei--~g~--P~~K~ 50 (188)
+|+++|++|| +|||||+|+|+.++|++||||||+++ +|+ |++|-
T Consensus 346 ~L~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~~~v~K~ 395 (407)
T cd01569 346 RLKAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKWRDVFKD 395 (407)
T ss_pred HHHHCCCccccceEecCccceecCCCcccCceeEEEEEecCCeeeeeeeC
Confidence 5888999999 99999999999999999999999988 443 88884
No 13
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=98.94 E-value=9.6e-10 Score=98.28 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=41.4
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecC
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSE 52 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~ 52 (188)
+.|++|.++|+|||+|||||+|+||. .++..||||+||+|++|+.-
T Consensus 292 ~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr 337 (352)
T PRK07188 292 KKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR 337 (352)
T ss_pred HHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC
Confidence 57999999999999999999999996 56666999999999999943
No 14
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=98.46 E-value=1.5e-07 Score=84.05 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=46.4
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceE
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 65 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~Kqv 65 (188)
+.|.++.+. ||.|||||.+.+ +|++|+++|+|+++|+|++|+|..+||.-+|-.++|
T Consensus 273 ~ni~~ya~~---vD~isvGs~~~~---a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~ 329 (343)
T PRK08662 273 ERIRELRDV---VDGFGVGTYISF---APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEI 329 (343)
T ss_pred HHHHHHHHh---CCEEEcCccccC---CCccceEEEEEEECCeeeEeecCCcccccCCCHHHH
Confidence 567788654 999999999986 489999999999999999999976666655555444
No 15
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=97.01 E-value=0.00037 Score=63.18 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.5
Q ss_pred chhHHHHHh--CCCeeeEEeecCccccCC
Q 029790 2 FQPFLFFEM--KGHEVDAFGIGTYLVTCY 28 (188)
Q Consensus 2 ~~~I~~L~~--~Ga~ID~fGVGT~LvT~~ 28 (188)
++.|.+|.+ +|++||+|||||+|+|+.
T Consensus 315 e~~i~~L~~~~~g~~~~~FGIGT~L~~d~ 343 (377)
T cd01401 315 VEKALELYEYFKGRIKVSFGIGTNLTNDF 343 (377)
T ss_pred HHHHHHHHHHHcCCcceeEecCcceecCC
Confidence 467899998 999999999999999985
No 16
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=68.38 E-value=2.8 Score=37.64 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred hHHHHHhCCCeeeEEeecCccccC
Q 029790 4 PFLFFEMKGHEVDAFGIGTYLVTC 27 (188)
Q Consensus 4 ~I~~L~~~Ga~ID~fGVGT~LvT~ 27 (188)
-|..|+++|+|||+.|+=.++-+.
T Consensus 209 lI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 209 LIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHCCCCccceeeeeeecCC
Confidence 588999999999999999886554
No 17
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=44.09 E-value=8.7 Score=33.81 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.2
Q ss_pred chhHHHHHhCCCeeeEEeecCccccCCC
Q 029790 2 FQPFLFFEMKGHEVDAFGIGTYLVTCYA 29 (188)
Q Consensus 2 ~~~I~~L~~~Ga~ID~fGVGT~LvT~~~ 29 (188)
++-|+.|+++|+|||++|+=.++-+...
T Consensus 191 ~~lv~~l~~~gvpIdgIG~Q~H~~~~~~ 218 (320)
T PF00331_consen 191 LNLVKDLKARGVPIDGIGLQSHFDAGYP 218 (320)
T ss_dssp HHHHHHHHHTTHCS-EEEEEEEEETTSS
T ss_pred HHHHHHHHhCCCccceechhhccCCCCC
Confidence 4568899999999999999999987654
No 18
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=40.05 E-value=15 Score=30.90 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.5
Q ss_pred chhHHHHHhCCCeeeEEeecCcccc
Q 029790 2 FQPFLFFEMKGHEVDAFGIGTYLVT 26 (188)
Q Consensus 2 ~~~I~~L~~~Ga~ID~fGVGT~LvT 26 (188)
++-|+.|+++|++||++|+=-++.+
T Consensus 139 ~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 139 YELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred HHHHHHHHHCCCccceeeeeeeecC
Confidence 4567899999999999999666654
No 19
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=39.27 E-value=24 Score=29.82 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCChhhhhcc----CCcccccccCHHHHHHHHHHHh
Q 029790 139 RERCIKQLEQMRPDHMRRL----NPTPYKVSVSAKLYDFIHFLWL 179 (188)
Q Consensus 139 R~~~~~~l~~L~~~~~rl~----~p~~Y~V~lS~~L~~l~~~l~~ 179 (188)
-+|+++||..|-+-..+.. .-+.||+.+++-|..++++|..
T Consensus 85 H~~hReqlpeLi~latKverVHgd~p~~p~gl~~~L~~l~~eL~~ 129 (221)
T COG2846 85 HERHREQLPELIPLATKVERVHGDKPSCPAGLAELLEALKEELES 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHH
Confidence 3467788877766666655 3448999999999999998865
No 20
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.71 E-value=22 Score=29.18 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.7
Q ss_pred chhHHHHHhCCCeeeEEeecCc
Q 029790 2 FQPFLFFEMKGHEVDAFGIGTY 23 (188)
Q Consensus 2 ~~~I~~L~~~Ga~ID~fGVGT~ 23 (188)
.+.++.|+++|..||+.|+|+.
T Consensus 126 ~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 126 VKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred HHHHHHHHHcCCeEEEEEeCCC
Confidence 3578899999999999999987
No 21
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.51 E-value=3.8 Score=30.96 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=32.8
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeee
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKL 50 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~ 50 (188)
+.+.++....-.|..+|.|++..+| ..+.+||.|+.+.|..-.
T Consensus 4 ~~~a~~~~~~~~i~~~G~G~s~~~a-----~e~~~kl~e~~~i~~~~~ 46 (153)
T cd05009 4 KELAEKLKEAKSFYVLGRGPNYGTA-----LEGALKLKETSYIHAEAY 46 (153)
T ss_pred HHHHHHHhccCcEEEEcCCCCHHHH-----HHHHHHHHHHHhhcceec
Confidence 4566666777789999999999987 678889888855555544
No 22
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=36.27 E-value=19 Score=22.16 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=10.8
Q ss_pred ecCCCCccCCCCcceE
Q 029790 50 LSEDVSKVSIPCKKRS 65 (188)
Q Consensus 50 ~S~~~~K~t~PG~Kqv 65 (188)
+|+|++. +||+|..
T Consensus 24 lsnDP~R--nP~rkd~ 37 (38)
T PRK02655 24 LSSDPTR--NPGRKDL 37 (38)
T ss_pred CCCCCCC--CCCcccC
Confidence 6888877 7999863
No 23
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=34.90 E-value=21 Score=27.72 Aligned_cols=27 Identities=15% Similarity=-0.091 Sum_probs=22.9
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCCC
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCYA 29 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~ 29 (188)
+.+.++..++-.|..||+|++...|.+
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~ 28 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQH 28 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHH
Confidence 567788899999999999999987743
No 24
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=29.78 E-value=25 Score=35.87 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.4
Q ss_pred hhHHHHHhCCCeeeEEeecCccc
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLV 25 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~Lv 25 (188)
+-|+.|.++|.|||+.| ||++.
T Consensus 856 Gvl~ALeE~GIPvD~VG-GTSIG 877 (1158)
T KOG2968|consen 856 GVLQALEEAGIPVDMVG-GTSIG 877 (1158)
T ss_pred HHHHHHHHcCCCeeeec-cccHH
Confidence 45889999999999998 88886
No 25
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=29.41 E-value=31 Score=27.34 Aligned_cols=19 Identities=47% Similarity=0.539 Sum_probs=16.0
Q ss_pred eecCccccCCCCCccceEEEEE
Q 029790 19 GIGTYLVTCYAQAALGCVFKLV 40 (188)
Q Consensus 19 GVGT~LvT~~~~P~lg~VYKLv 40 (188)
-|||-||.+ |+.|-|+||-
T Consensus 52 nVGtGlVGA---PACGDVMkLq 70 (157)
T KOG3361|consen 52 NVGTGLVGA---PACGDVMKLQ 70 (157)
T ss_pred CcccccccC---ccccceeeEE
Confidence 389999954 9999999994
No 26
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=28.05 E-value=25 Score=20.56 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=10.6
Q ss_pred HHHHHhCCCeeeEEee
Q 029790 5 FLFFEMKGHEVDAFGI 20 (188)
Q Consensus 5 I~~L~~~Ga~ID~fGV 20 (188)
++.|.+-|.||..||=
T Consensus 2 ~~~LR~lgePi~lFGE 17 (30)
T PF08799_consen 2 RRRLRELGEPITLFGE 17 (30)
T ss_dssp HHHHHHCT--SCETT-
T ss_pred hHHHHhcCCChhhhCC
Confidence 4678888999999983
No 27
>CHL00024 psbI photosystem II protein I
Probab=27.08 E-value=37 Score=20.74 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=9.6
Q ss_pred ecCCCCccCCCCcce
Q 029790 50 LSEDVSKVSIPCKKR 64 (188)
Q Consensus 50 ~S~~~~K~t~PG~Kq 64 (188)
+|+|++. +||+|+
T Consensus 24 lsnDp~R--nP~rk~ 36 (36)
T CHL00024 24 LSNDPGR--NPGRKE 36 (36)
T ss_pred cCCCCCC--CCCCCC
Confidence 5887776 788874
No 28
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=26.23 E-value=48 Score=27.71 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHhCCCeeeEEeecCccc---cCCCCC
Q 029790 6 LFFEMKGHEVDAFGIGTYLV---TCYAQA 31 (188)
Q Consensus 6 ~~L~~~Ga~ID~fGVGT~Lv---T~~~~P 31 (188)
.-|.++|-.|.+||-|+++- .+.+.|
T Consensus 20 ~~L~~~G~~V~SfGTGs~VkLPGps~d~P 48 (195)
T PF04722_consen 20 NVLKKAGFNVRSFGTGSHVKLPGPSIDKP 48 (195)
T ss_dssp HHHHHTT-EEEEEE-SSSEEEEESSTTCE
T ss_pred HHHHHCCCceEeecCCCcccCCCCCCCCC
Confidence 45788999999999999985 444556
No 29
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.40 E-value=36 Score=27.71 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=21.3
Q ss_pred hhHHHHHhCCCeeeEEeecCccccCC
Q 029790 3 QPFLFFEMKGHEVDAFGIGTYLVTCY 28 (188)
Q Consensus 3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~ 28 (188)
+.+.++..+|-.|..||+|.+..+|.
T Consensus 34 ~~~~~~l~~a~~I~i~G~G~S~~~A~ 59 (197)
T PRK13936 34 ELMVQALLNEGKILACGNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHCCCEEEEEeCcHhHHHHH
Confidence 45666788999999999999988763
No 30
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.01 E-value=22 Score=33.36 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=51.9
Q ss_pred hHHHHHhCCCeeeEEeecC------ccccCCCCCccceEEEEEEE---CCcceeeecCCCCccCCCC--cceEEEeecCC
Q 029790 4 PFLFFEMKGHEVDAFGIGT------YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC--KKRSYRLYGKE 72 (188)
Q Consensus 4 ~I~~L~~~Ga~ID~fGVGT------~LvT~~~~P~lg~VYKLvei---~g~P~~K~S~~~~K~t~PG--~KqvyR~~~~~ 72 (188)
.-..|.+.||.+=..|||| +.+|+-+.|-|..||++++. -|.|+| .+ |.+..|| .|.+. ...+
T Consensus 281 ~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi--a~--ggi~~~~~~~~al~--~ga~ 354 (479)
T PRK07807 281 GTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW--AD--GGVRHPRDVALALA--AGAS 354 (479)
T ss_pred HHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE--ec--CCCCCHHHHHHHHH--cCCC
Confidence 3457788896666677777 88899899999999999874 256776 44 6677776 23332 1334
Q ss_pred CCeeeeEEecCCCC
Q 029790 73 GYPLVDIMTGENEP 86 (188)
Q Consensus 73 g~~~~D~i~l~~e~ 86 (188)
.-+++.+++..+|.
T Consensus 355 ~v~~g~~~ag~~Es 368 (479)
T PRK07807 355 NVMIGSWFAGTYES 368 (479)
T ss_pred eeeccHhhccCccC
Confidence 45566666666664
Done!