Query 029791
Match_columns 188
No_of_seqs 164 out of 1220
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 2.6E-71 5.6E-76 480.1 18.6 187 1-188 1-202 (361)
2 PTZ00023 glyceraldehyde-3-phos 100.0 2.2E-66 4.8E-71 448.7 20.2 185 1-188 1-186 (337)
3 PRK15425 gapA glyceraldehyde-3 100.0 4.8E-65 1E-69 439.5 20.7 183 1-188 1-184 (331)
4 PLN02237 glyceraldehyde-3-phos 100.0 1.3E-64 2.8E-69 447.4 20.2 184 3-188 75-263 (442)
5 PTZ00353 glycosomal glyceralde 100.0 1.7E-64 3.6E-69 437.2 20.3 182 1-184 1-183 (342)
6 COG0057 GapA Glyceraldehyde-3- 100.0 2E-64 4.3E-69 430.7 19.9 182 4-188 2-186 (335)
7 PLN02272 glyceraldehyde-3-phos 100.0 4.6E-64 1E-68 442.9 21.2 184 4-188 86-269 (421)
8 PRK07403 glyceraldehyde-3-phos 100.0 3.8E-64 8.2E-69 434.5 19.9 182 4-188 2-188 (337)
9 PRK07729 glyceraldehyde-3-phos 100.0 5E-64 1.1E-68 434.3 20.3 184 1-188 1-186 (343)
10 PLN02358 glyceraldehyde-3-phos 100.0 1.8E-63 3.9E-68 431.4 20.7 185 3-188 5-190 (338)
11 PLN03096 glyceraldehyde-3-phos 100.0 7.5E-63 1.6E-67 433.1 20.5 184 3-188 60-246 (395)
12 TIGR01534 GAPDH-I glyceraldehy 100.0 7.7E-63 1.7E-67 425.9 19.8 182 5-188 1-186 (327)
13 PRK08289 glyceraldehyde-3-phos 100.0 1.8E-61 4E-66 428.7 19.4 184 3-188 127-323 (477)
14 PRK13535 erythrose 4-phosphate 100.0 5.3E-61 1.2E-65 415.5 20.6 182 4-188 2-188 (336)
15 PRK08955 glyceraldehyde-3-phos 100.0 8.2E-61 1.8E-65 414.3 20.8 182 3-188 2-186 (334)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 7.2E-58 1.6E-62 395.2 20.6 181 5-188 1-186 (325)
17 PF00044 Gp_dh_N: Glyceraldehy 100.0 5.2E-54 1.1E-58 334.9 12.6 149 4-154 1-151 (151)
18 smart00846 Gp_dh_N Glyceraldeh 100.0 1.3E-48 2.7E-53 304.2 16.7 148 4-154 1-149 (149)
19 KOG0657 Glyceraldehyde 3-phosp 100.0 2.1E-50 4.5E-55 335.2 6.0 169 14-188 1-169 (285)
20 TIGR01546 GAPDH-II_archae glyc 100.0 1.4E-42 3E-47 300.2 15.2 165 6-188 1-170 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 3.9E-36 8.4E-41 261.7 16.1 163 4-185 2-171 (341)
22 PRK06901 aspartate-semialdehyd 100.0 1.1E-27 2.3E-32 205.6 13.4 153 1-186 1-162 (322)
23 COG0136 Asd Aspartate-semialde 99.9 4.4E-25 9.6E-30 190.0 13.0 153 4-186 2-165 (334)
24 PRK14874 aspartate-semialdehyd 99.9 4.8E-25 1E-29 191.5 13.4 149 4-185 2-160 (334)
25 TIGR01745 asd_gamma aspartate- 99.9 1.1E-24 2.5E-29 190.5 9.6 155 4-186 1-166 (366)
26 TIGR01296 asd_B aspartate-semi 99.9 8.6E-24 1.9E-28 184.1 13.5 150 5-187 1-160 (339)
27 PRK06728 aspartate-semialdehyd 99.9 8.2E-22 1.8E-26 171.8 14.2 154 3-186 5-164 (347)
28 PRK08040 putative semialdehyde 99.9 1.6E-21 3.5E-26 169.6 14.6 152 2-186 3-164 (336)
29 PRK06598 aspartate-semialdehyd 99.9 2.2E-21 4.9E-26 170.1 12.2 153 4-186 2-167 (369)
30 PRK08664 aspartate-semialdehyd 99.8 4E-20 8.6E-25 161.6 13.7 166 1-188 1-183 (349)
31 PRK05671 aspartate-semialdehyd 99.8 9.9E-20 2.1E-24 158.5 14.3 151 3-186 4-163 (336)
32 TIGR00978 asd_EA aspartate-sem 99.8 2.5E-19 5.4E-24 156.1 14.2 164 4-188 1-180 (341)
33 PLN02383 aspartate semialdehyd 99.8 3.9E-19 8.4E-24 155.2 13.1 151 3-186 7-171 (344)
34 PRK00436 argC N-acetyl-gamma-g 99.7 3E-17 6.6E-22 143.2 14.5 157 1-186 1-184 (343)
35 PRK08300 acetaldehyde dehydrog 99.7 3.9E-17 8.5E-22 140.0 10.2 156 1-184 2-160 (302)
36 TIGR01850 argC N-acetyl-gamma- 99.7 3.8E-16 8.2E-21 136.5 12.8 157 4-186 1-184 (346)
37 KOG4777 Aspartate-semialdehyde 99.7 5.9E-17 1.3E-21 135.0 4.9 166 1-186 1-185 (361)
38 PRK11863 N-acetyl-gamma-glutam 99.7 9.1E-16 2E-20 132.4 11.8 138 3-185 2-147 (313)
39 PLN02968 Probable N-acetyl-gam 99.6 3.5E-15 7.7E-20 131.9 12.3 156 3-186 38-219 (381)
40 TIGR01851 argC_other N-acetyl- 99.6 1.5E-14 3.3E-19 124.4 10.6 137 4-185 2-146 (310)
41 TIGR03215 ac_ald_DH_ac acetald 99.6 2.7E-14 5.8E-19 121.9 11.5 153 3-185 1-155 (285)
42 PF01118 Semialdhyde_dh: Semia 99.1 9.4E-11 2E-15 87.7 4.3 111 5-142 1-118 (121)
43 COG0002 ArgC Acetylglutamate s 98.6 5.2E-07 1.1E-11 78.6 11.3 141 3-169 2-167 (349)
44 smart00859 Semialdhyde_dh Semi 98.5 4E-07 8.6E-12 67.7 6.4 111 5-142 1-120 (122)
45 TIGR01921 DAP-DH diaminopimela 98.4 1.4E-06 3.1E-11 75.7 8.4 92 1-126 1-92 (324)
46 PRK13303 L-aspartate dehydroge 98.3 2.3E-06 5E-11 72.3 8.1 146 4-184 2-149 (265)
47 PRK13302 putative L-aspartate 98.2 5E-06 1.1E-10 70.6 8.4 89 1-119 4-93 (271)
48 TIGR00036 dapB dihydrodipicoli 98.2 2.7E-06 5.8E-11 72.0 6.5 95 4-123 2-97 (266)
49 PRK13301 putative L-aspartate 98.2 4.4E-06 9.5E-11 70.7 7.7 90 3-125 2-94 (267)
50 PRK06270 homoserine dehydrogen 98.0 3.7E-05 8.1E-10 67.3 8.4 34 3-36 2-44 (341)
51 COG1712 Predicted dinucleotide 97.9 3.6E-05 7.7E-10 63.8 7.5 92 4-126 1-93 (255)
52 PF01113 DapB_N: Dihydrodipico 97.9 1.9E-05 4.1E-10 59.4 5.4 92 4-119 1-93 (124)
53 PRK13304 L-aspartate dehydroge 97.9 4.8E-05 1E-09 64.3 8.4 91 4-126 2-93 (265)
54 PRK00048 dihydrodipicolinate r 97.9 3E-05 6.5E-10 65.2 6.4 87 4-123 2-89 (257)
55 PF01408 GFO_IDH_MocA: Oxidore 97.9 6.1E-05 1.3E-09 55.1 7.0 93 4-127 1-95 (120)
56 PRK06349 homoserine dehydrogen 97.8 2.8E-05 6E-10 70.0 5.8 93 1-125 1-103 (426)
57 PRK11579 putative oxidoreducta 97.8 9.8E-05 2.1E-09 64.3 8.3 94 1-126 1-96 (346)
58 COG0289 DapB Dihydrodipicolina 97.5 0.00058 1.2E-08 57.8 8.9 96 3-123 2-98 (266)
59 COG0673 MviM Predicted dehydro 97.4 0.00067 1.4E-08 58.1 7.8 96 1-126 1-99 (342)
60 PRK06392 homoserine dehydrogen 97.3 0.00043 9.3E-09 60.4 5.6 34 4-37 1-41 (326)
61 PRK06813 homoserine dehydrogen 97.3 0.00042 9E-09 61.0 5.5 34 3-36 2-44 (346)
62 PRK08374 homoserine dehydrogen 97.2 0.00069 1.5E-08 59.3 5.9 106 3-125 2-121 (336)
63 PRK10206 putative oxidoreducta 97.2 0.0011 2.4E-08 57.9 6.9 93 4-126 2-96 (344)
64 COG4091 Predicted homoserine d 97.1 0.00072 1.6E-08 59.5 4.9 92 3-104 17-112 (438)
65 COG4569 MhpF Acetaldehyde dehy 97.1 0.0024 5.3E-08 52.5 7.5 133 3-168 4-144 (310)
66 COG0460 ThrA Homoserine dehydr 97.1 0.0021 4.5E-08 56.3 7.3 36 1-36 1-45 (333)
67 PLN02775 Probable dihydrodipic 96.9 0.0028 6.1E-08 54.4 7.0 34 3-37 11-45 (286)
68 PF03447 NAD_binding_3: Homose 96.9 0.0015 3.3E-08 48.0 4.6 84 10-126 1-90 (117)
69 PRK05447 1-deoxy-D-xylulose 5- 96.8 0.0018 3.8E-08 57.7 4.8 109 4-123 2-120 (385)
70 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.027 5.9E-07 46.4 11.2 35 3-38 23-57 (217)
71 cd01076 NAD_bind_1_Glu_DH NAD( 96.7 0.035 7.5E-07 46.0 11.8 34 2-36 30-63 (227)
72 PLN02700 homoserine dehydrogen 96.7 0.0037 7.9E-08 55.7 5.8 36 1-36 1-44 (377)
73 PRK05472 redox-sensing transcr 96.6 0.0077 1.7E-07 49.1 6.6 95 3-126 84-179 (213)
74 COG2344 AT-rich DNA-binding pr 96.4 0.0076 1.7E-07 48.8 5.4 95 3-126 84-179 (211)
75 PLN02819 lysine-ketoglutarate 96.0 0.019 4.2E-07 57.1 7.2 99 3-126 569-679 (1042)
76 PF02629 CoA_binding: CoA bind 96.0 0.013 2.7E-07 41.9 4.4 92 3-126 3-95 (96)
77 PRK09414 glutamate dehydrogena 96.0 0.031 6.7E-07 50.8 7.8 100 3-123 232-341 (445)
78 TIGR02130 dapB_plant dihydrodi 95.8 0.028 6.1E-07 48.0 6.6 32 4-36 1-34 (275)
79 PLN02477 glutamate dehydrogena 95.7 0.16 3.5E-06 45.8 11.4 33 4-37 207-239 (410)
80 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.069 1.5E-06 43.3 8.2 32 3-36 28-59 (200)
81 COG0569 TrkA K+ transport syst 95.7 0.034 7.4E-07 45.9 6.3 99 4-128 1-103 (225)
82 PF02826 2-Hacid_dh_C: D-isome 95.4 0.028 6E-07 44.5 4.8 32 4-36 37-68 (178)
83 cd05313 NAD_bind_2_Glu_DH NAD( 95.3 0.18 3.8E-06 42.7 9.4 105 4-125 39-153 (254)
84 PRK07819 3-hydroxybutyryl-CoA 95.3 0.22 4.7E-06 42.5 10.1 148 4-171 6-179 (286)
85 TIGR03736 PRTRC_ThiF PRTRC sys 95.2 0.055 1.2E-06 45.5 6.1 106 3-114 11-127 (244)
86 COG1748 LYS9 Saccharopine dehy 95.2 0.091 2E-06 47.0 7.7 98 4-126 2-99 (389)
87 PTZ00079 NADP-specific glutama 95.1 0.16 3.5E-06 46.3 9.2 103 4-123 238-350 (454)
88 TIGR01761 thiaz-red thiazoliny 95.1 0.12 2.6E-06 45.5 8.1 92 3-126 3-98 (343)
89 PF03807 F420_oxidored: NADP o 94.9 0.086 1.9E-06 36.8 5.6 89 5-125 1-93 (96)
90 KOG2741 Dimeric dihydrodiol de 94.9 0.11 2.4E-06 45.6 7.3 35 3-37 6-42 (351)
91 PF03435 Saccharop_dh: Sacchar 94.9 0.062 1.3E-06 47.3 5.8 97 6-125 1-97 (386)
92 COG1063 Tdh Threonine dehydrog 94.9 0.17 3.6E-06 44.3 8.5 138 5-168 171-311 (350)
93 PF03446 NAD_binding_2: NAD bi 94.8 0.053 1.1E-06 42.2 4.7 31 4-36 2-32 (163)
94 PRK09466 metL bifunctional asp 94.8 0.026 5.5E-07 55.0 3.5 35 2-36 457-500 (810)
95 PRK09436 thrA bifunctional asp 94.8 0.06 1.3E-06 52.5 5.9 34 3-36 465-506 (819)
96 PTZ00117 malate dehydrogenase; 94.7 0.11 2.4E-06 45.0 6.8 33 3-36 5-37 (319)
97 PRK08229 2-dehydropantoate 2-r 94.6 0.43 9.4E-06 41.1 10.3 32 1-34 1-32 (341)
98 PRK07634 pyrroline-5-carboxyla 94.3 0.11 2.3E-06 42.7 5.7 36 1-36 1-40 (245)
99 PLN02696 1-deoxy-D-xylulose-5- 94.3 0.23 5E-06 45.3 8.2 112 4-125 58-180 (454)
100 PRK08507 prephenate dehydrogen 94.3 0.27 5.9E-06 41.3 8.2 31 5-36 2-33 (275)
101 PTZ00082 L-lactate dehydrogena 93.9 0.19 4.2E-06 43.7 6.8 34 3-37 6-39 (321)
102 cd01483 E1_enzyme_family Super 93.8 0.1 2.2E-06 39.5 4.2 31 5-36 1-31 (143)
103 PRK08410 2-hydroxyacid dehydro 93.7 0.092 2E-06 45.4 4.4 30 4-34 146-175 (311)
104 PF05368 NmrA: NmrA-like famil 93.7 0.19 4E-06 40.7 6.0 95 6-125 1-102 (233)
105 PRK14030 glutamate dehydrogena 93.7 0.46 1E-05 43.3 8.9 104 4-123 229-341 (445)
106 CHL00194 ycf39 Ycf39; Provisio 93.6 0.39 8.4E-06 40.9 8.0 30 5-35 2-32 (317)
107 PRK06487 glycerate dehydrogena 93.6 0.11 2.4E-06 45.0 4.6 31 4-35 149-179 (317)
108 PRK11880 pyrroline-5-carboxyla 93.4 0.18 3.9E-06 42.0 5.5 35 1-36 1-36 (267)
109 COG0111 SerA Phosphoglycerate 93.3 0.12 2.6E-06 45.2 4.4 30 4-34 143-172 (324)
110 PRK06932 glycerate dehydrogena 93.3 0.12 2.7E-06 44.7 4.4 30 4-34 148-177 (314)
111 cd08230 glucose_DH Glucose deh 93.2 2.3 5E-05 36.6 12.3 140 4-168 174-315 (355)
112 PF13380 CoA_binding_2: CoA bi 93.1 0.55 1.2E-05 34.7 7.1 83 5-126 2-88 (116)
113 PRK07574 formate dehydrogenase 92.9 0.15 3.3E-06 45.6 4.4 30 4-34 193-222 (385)
114 PF10727 Rossmann-like: Rossma 92.9 0.089 1.9E-06 39.9 2.6 33 3-36 10-42 (127)
115 PLN02928 oxidoreductase family 92.8 0.15 3.3E-06 44.8 4.4 30 4-34 160-189 (347)
116 COG0287 TyrA Prephenate dehydr 92.8 0.66 1.4E-05 39.7 8.2 24 3-26 3-26 (279)
117 PLN02256 arogenate dehydrogena 92.8 0.21 4.5E-06 43.1 5.1 34 2-36 35-68 (304)
118 TIGR01202 bchC 2-desacetyl-2-h 92.7 2 4.3E-05 36.5 11.1 124 5-168 147-271 (308)
119 PRK06436 glycerate dehydrogena 92.6 0.18 3.8E-06 43.6 4.5 31 4-35 123-153 (303)
120 PRK13243 glyoxylate reductase; 92.6 0.17 3.8E-06 44.1 4.4 32 4-37 151-182 (333)
121 PRK11559 garR tartronate semia 92.5 0.2 4.2E-06 42.5 4.6 33 1-36 1-33 (296)
122 PRK11790 D-3-phosphoglycerate 92.4 0.19 4E-06 45.2 4.5 30 4-34 152-181 (409)
123 PRK14031 glutamate dehydrogena 92.3 0.77 1.7E-05 41.9 8.3 103 4-124 229-341 (444)
124 PRK06223 malate dehydrogenase; 92.3 0.37 8E-06 41.1 6.0 32 4-36 3-34 (307)
125 PRK13403 ketol-acid reductoiso 92.3 0.22 4.8E-06 43.7 4.6 32 4-36 17-48 (335)
126 PRK15409 bifunctional glyoxyla 92.2 0.21 4.5E-06 43.5 4.5 32 4-37 146-178 (323)
127 PRK12480 D-lactate dehydrogena 92.2 0.23 5E-06 43.3 4.7 30 4-34 147-176 (330)
128 COG1052 LdhA Lactate dehydroge 92.1 0.21 4.5E-06 43.6 4.3 30 4-34 147-176 (324)
129 cd00755 YgdL_like Family of ac 92.1 0.55 1.2E-05 39.0 6.6 32 3-35 11-42 (231)
130 PRK00066 ldh L-lactate dehydro 92.0 1.4 2.9E-05 38.3 9.1 33 4-36 7-39 (315)
131 PF00056 Ldh_1_N: lactate/mala 91.9 0.4 8.7E-06 36.6 5.2 80 4-105 1-81 (141)
132 PLN02306 hydroxypyruvate reduc 91.8 0.25 5.4E-06 44.2 4.5 32 4-37 166-198 (386)
133 PRK15469 ghrA bifunctional gly 91.7 0.29 6.2E-06 42.5 4.7 30 4-34 137-166 (312)
134 PRK15438 erythronate-4-phospha 91.5 0.27 5.9E-06 43.8 4.5 31 4-36 117-147 (378)
135 PLN03139 formate dehydrogenase 91.4 0.27 5.8E-06 44.0 4.3 31 4-36 200-230 (386)
136 PRK08605 D-lactate dehydrogena 91.3 0.31 6.8E-06 42.5 4.6 32 4-36 147-178 (332)
137 PRK11064 wecC UDP-N-acetyl-D-m 91.2 0.34 7.5E-06 43.5 4.8 33 1-34 1-33 (415)
138 cd00401 AdoHcyase S-adenosyl-L 91.2 0.53 1.2E-05 42.5 6.0 31 4-36 203-233 (413)
139 PRK08618 ornithine cyclodeamin 91.1 0.62 1.3E-05 40.4 6.2 34 4-37 128-161 (325)
140 PLN00016 RNA-binding protein; 90.9 0.75 1.6E-05 40.3 6.6 33 3-36 52-89 (378)
141 cd05293 LDH_1 A subgroup of L- 90.8 0.25 5.5E-06 42.8 3.4 34 3-36 3-36 (312)
142 PRK07679 pyrroline-5-carboxyla 90.6 0.44 9.5E-06 40.2 4.7 26 1-26 1-26 (279)
143 PLN02602 lactate dehydrogenase 90.6 0.55 1.2E-05 41.5 5.4 147 4-178 38-203 (350)
144 TIGR01915 npdG NADPH-dependent 90.5 0.81 1.8E-05 37.2 6.0 29 4-33 1-30 (219)
145 PRK06476 pyrroline-5-carboxyla 90.4 0.62 1.3E-05 38.7 5.4 32 5-36 2-34 (258)
146 KOG0455 Homoserine dehydrogena 90.3 0.36 7.7E-06 41.2 3.7 36 1-36 1-44 (364)
147 PRK07417 arogenate dehydrogena 90.2 0.46 1E-05 40.1 4.5 29 5-34 2-30 (279)
148 PRK07502 cyclohexadienyl dehyd 90.1 0.72 1.6E-05 39.4 5.6 33 3-36 6-39 (307)
149 PLN02712 arogenate dehydrogena 90.1 0.5 1.1E-05 45.2 5.1 32 3-35 369-400 (667)
150 PLN02688 pyrroline-5-carboxyla 90.1 0.76 1.6E-05 38.2 5.6 33 4-36 1-36 (266)
151 PRK00257 erythronate-4-phospha 89.9 0.51 1.1E-05 42.2 4.7 31 4-36 117-147 (381)
152 PLN02712 arogenate dehydrogena 89.5 0.55 1.2E-05 44.9 4.8 32 3-35 52-83 (667)
153 TIGR01327 PGDH D-3-phosphoglyc 89.4 0.52 1.1E-05 43.7 4.5 30 4-34 139-168 (525)
154 PRK09880 L-idonate 5-dehydroge 89.4 3 6.6E-05 35.7 9.0 92 4-121 171-263 (343)
155 cd01338 MDH_choloroplast_like 89.4 1.1 2.4E-05 39.0 6.3 147 3-174 2-173 (322)
156 cd05294 LDH-like_MDH_nadp A la 89.3 0.89 1.9E-05 39.2 5.6 31 4-34 1-33 (309)
157 PRK13581 D-3-phosphoglycerate 89.1 0.56 1.2E-05 43.5 4.4 30 4-34 141-170 (526)
158 PRK09599 6-phosphogluconate de 88.9 0.67 1.4E-05 39.6 4.6 30 5-36 2-31 (301)
159 PRK08644 thiamine biosynthesis 88.9 0.35 7.6E-06 39.5 2.7 33 3-36 28-60 (212)
160 PRK05442 malate dehydrogenase; 88.7 0.98 2.1E-05 39.5 5.5 25 1-25 1-27 (326)
161 cd00757 ThiF_MoeB_HesA_family 88.5 0.34 7.4E-06 39.8 2.4 33 3-36 21-53 (228)
162 PF03721 UDPG_MGDP_dh_N: UDP-g 88.5 0.68 1.5E-05 37.0 4.1 30 4-34 1-30 (185)
163 PTZ00431 pyrroline carboxylate 88.4 0.83 1.8E-05 38.2 4.7 26 1-26 1-26 (260)
164 COG0334 GdhA Glutamate dehydro 88.3 4.8 0.0001 36.4 9.6 34 4-38 208-241 (411)
165 PRK12491 pyrroline-5-carboxyla 88.3 1.2 2.7E-05 37.6 5.7 24 3-26 2-25 (272)
166 PRK12490 6-phosphogluconate de 88.2 0.81 1.8E-05 39.0 4.6 30 5-36 2-31 (299)
167 COG2910 Putative NADH-flavin r 87.9 0.87 1.9E-05 37.1 4.3 31 4-35 1-32 (211)
168 COG0039 Mdh Malate/lactate deh 87.8 2.2 4.7E-05 37.3 7.0 23 4-26 1-23 (313)
169 TIGR03366 HpnZ_proposed putati 87.7 3.5 7.5E-05 34.4 8.1 137 4-168 122-260 (280)
170 TIGR00872 gnd_rel 6-phosphoglu 87.7 0.88 1.9E-05 38.8 4.5 30 5-36 2-31 (298)
171 cd05291 HicDH_like L-2-hydroxy 87.6 1.3 2.9E-05 37.9 5.6 29 5-33 2-31 (306)
172 PRK05808 3-hydroxybutyryl-CoA 87.6 1 2.2E-05 38.0 4.7 34 1-36 1-34 (282)
173 PRK12475 thiamine/molybdopteri 87.6 0.57 1.2E-05 41.1 3.3 33 3-36 24-56 (338)
174 PRK15116 sulfur acceptor prote 87.5 0.69 1.5E-05 39.4 3.7 32 3-35 30-61 (268)
175 PRK03369 murD UDP-N-acetylmura 87.5 4.1 8.9E-05 37.3 9.0 84 4-119 13-96 (488)
176 PLN02545 3-hydroxybutyryl-CoA 87.3 1.1 2.4E-05 37.9 4.9 34 1-36 1-35 (295)
177 TIGR03649 ergot_EASG ergot alk 87.3 2.6 5.5E-05 35.0 7.0 30 5-35 1-31 (285)
178 PRK00094 gpsA NAD(P)H-dependen 87.3 1.1 2.4E-05 38.0 4.9 29 4-33 2-30 (325)
179 COG0345 ProC Pyrroline-5-carbo 87.3 1.5 3.2E-05 37.4 5.5 39 4-44 2-42 (266)
180 COG0771 MurD UDP-N-acetylmuram 87.1 4.4 9.6E-05 37.1 8.9 89 3-119 7-95 (448)
181 PRK05479 ketol-acid reductoiso 87.0 1.1 2.3E-05 39.4 4.6 31 4-35 18-48 (330)
182 COG3804 Uncharacterized conser 86.9 1.2 2.6E-05 38.5 4.8 35 3-37 2-36 (350)
183 cd05290 LDH_3 A subgroup of L- 86.9 1.2 2.7E-05 38.5 5.0 32 5-36 1-32 (307)
184 KOG0069 Glyoxylate/hydroxypyru 86.9 0.53 1.1E-05 41.4 2.7 22 4-25 163-184 (336)
185 PRK06046 alanine dehydrogenase 86.8 1.5 3.3E-05 38.0 5.5 34 4-37 130-163 (326)
186 KOG1502 Flavonol reductase/cin 86.6 5 0.00011 35.2 8.5 83 3-104 6-89 (327)
187 PRK07530 3-hydroxybutyryl-CoA 86.6 1.3 2.8E-05 37.5 4.9 32 3-36 4-35 (292)
188 TIGR02354 thiF_fam2 thiamine b 86.5 0.4 8.7E-06 38.9 1.7 33 3-36 21-53 (200)
189 PRK11154 fadJ multifunctional 86.5 1.3 2.7E-05 42.7 5.3 151 4-176 310-487 (708)
190 TIGR00465 ilvC ketol-acid redu 86.4 1.3 2.8E-05 38.5 4.8 33 3-36 3-35 (314)
191 PRK08818 prephenate dehydrogen 86.2 1.2 2.6E-05 39.7 4.6 31 3-33 4-35 (370)
192 TIGR01505 tartro_sem_red 2-hyd 86.0 0.95 2.1E-05 38.2 3.8 30 5-36 1-30 (291)
193 PRK06035 3-hydroxyacyl-CoA deh 86.0 1.5 3.2E-05 37.2 4.9 34 1-36 1-34 (291)
194 cd08237 ribitol-5-phosphate_DH 86.0 6 0.00013 34.0 8.8 31 4-34 165-196 (341)
195 TIGR02853 spore_dpaA dipicolin 85.6 1.3 2.9E-05 37.8 4.5 30 4-34 152-181 (287)
196 PLN02662 cinnamyl-alcohol dehy 85.6 6.1 0.00013 33.1 8.6 30 4-34 5-35 (322)
197 PF00208 ELFV_dehydrog: Glutam 85.5 1.6 3.4E-05 36.6 4.8 105 3-125 32-146 (244)
198 PRK15059 tartronate semialdehy 85.5 1.3 2.9E-05 37.8 4.5 30 5-36 2-31 (292)
199 PRK14618 NAD(P)H-dependent gly 85.5 1.5 3.3E-05 37.7 4.9 31 3-34 4-34 (328)
200 PRK15461 NADH-dependent gamma- 85.2 1.4 3E-05 37.6 4.4 31 4-36 2-32 (296)
201 PRK06928 pyrroline-5-carboxyla 85.0 1.7 3.6E-05 36.8 4.8 32 4-35 2-36 (277)
202 TIGR02440 FadJ fatty oxidation 85.0 1.2 2.7E-05 42.7 4.4 32 4-36 305-336 (699)
203 PRK06718 precorrin-2 dehydroge 85.0 16 0.00035 29.5 10.4 30 4-34 11-40 (202)
204 PF01210 NAD_Gly3P_dh_N: NAD-d 84.9 3.5 7.6E-05 31.7 6.2 100 5-126 1-103 (157)
205 PRK07680 late competence prote 84.9 2.2 4.8E-05 35.7 5.5 32 5-36 2-35 (273)
206 TIGR03026 NDP-sugDHase nucleot 84.5 1.4 3.1E-05 39.3 4.3 30 4-34 1-30 (411)
207 PRK05690 molybdopterin biosynt 84.4 0.89 1.9E-05 37.9 2.8 32 3-35 32-63 (245)
208 COG1062 AdhC Zn-dependent alco 84.3 3.7 7.9E-05 36.4 6.6 96 5-123 188-284 (366)
209 PRK14619 NAD(P)H-dependent gly 84.3 1.7 3.7E-05 37.2 4.6 31 3-34 4-34 (308)
210 TIGR02355 moeB molybdopterin s 84.3 0.88 1.9E-05 37.9 2.8 33 3-36 24-56 (240)
211 cd01486 Apg7 Apg7 is an E1-lik 84.1 0.58 1.2E-05 40.7 1.6 31 5-36 1-31 (307)
212 cd01065 NAD_bind_Shikimate_DH 83.9 3.4 7.5E-05 31.0 5.7 33 3-36 19-51 (155)
213 PF02254 TrkA_N: TrkA-N domain 83.7 2.4 5.3E-05 30.3 4.6 29 6-35 1-29 (116)
214 PRK06249 2-dehydropantoate 2-r 83.7 2.1 4.5E-05 36.7 4.9 32 2-34 4-35 (313)
215 COG1023 Gnd Predicted 6-phosph 83.5 1.3 2.8E-05 37.7 3.3 42 4-49 1-42 (300)
216 PF02737 3HCDH_N: 3-hydroxyacy 83.4 2.1 4.7E-05 33.9 4.5 149 5-172 1-172 (180)
217 PF02670 DXP_reductoisom: 1-de 83.3 3.8 8.2E-05 31.2 5.6 108 6-123 1-119 (129)
218 PTZ00075 Adenosylhomocysteinas 83.0 2 4.4E-05 39.5 4.7 29 4-33 255-283 (476)
219 cd01487 E1_ThiF_like E1_ThiF_l 82.9 0.94 2E-05 35.8 2.3 31 5-36 1-31 (174)
220 TIGR01019 sucCoAalpha succinyl 82.8 6.3 0.00014 33.9 7.5 87 3-123 6-93 (286)
221 KOG0068 D-3-phosphoglycerate d 82.7 1.9 4.2E-05 38.2 4.2 31 4-35 147-177 (406)
222 TIGR02437 FadB fatty oxidation 82.5 2.1 4.5E-05 41.3 4.8 31 4-36 314-344 (714)
223 cd08298 CAD2 Cinnamyl alcohol 82.3 28 0.0006 29.1 11.3 127 5-168 170-296 (329)
224 TIGR02356 adenyl_thiF thiazole 82.3 0.99 2.1E-05 36.5 2.2 33 3-36 21-53 (202)
225 PRK08293 3-hydroxybutyryl-CoA 82.2 2.7 5.9E-05 35.5 5.0 32 1-33 1-32 (287)
226 PRK14106 murD UDP-N-acetylmura 82.2 8.7 0.00019 34.3 8.5 94 3-125 5-98 (450)
227 cd08239 THR_DH_like L-threonin 82.1 4.4 9.5E-05 34.4 6.3 137 4-168 165-302 (339)
228 PRK06130 3-hydroxybutyryl-CoA 82.1 2.7 5.9E-05 35.7 5.0 30 4-34 5-34 (311)
229 PRK00683 murD UDP-N-acetylmura 82.0 2.4 5.2E-05 37.9 4.8 89 1-125 1-89 (418)
230 PTZ00142 6-phosphogluconate de 81.9 2 4.3E-05 39.5 4.2 31 4-36 2-32 (470)
231 PRK01438 murD UDP-N-acetylmura 81.7 9.9 0.00021 34.4 8.7 30 4-34 17-46 (480)
232 TIGR02441 fa_ox_alpha_mit fatt 81.0 1.6 3.6E-05 42.2 3.5 31 4-36 336-366 (737)
233 cd08242 MDR_like Medium chain 80.8 16 0.00034 30.6 9.1 84 4-119 157-240 (319)
234 PRK06129 3-hydroxyacyl-CoA deh 80.7 2.7 5.9E-05 35.9 4.5 31 4-36 3-33 (308)
235 COG2085 Predicted dinucleotide 80.5 4 8.7E-05 33.6 5.2 91 4-126 2-93 (211)
236 PRK09424 pntA NAD(P) transhydr 80.4 22 0.00048 33.1 10.6 31 4-36 166-196 (509)
237 cd05213 NAD_bind_Glutamyl_tRNA 80.2 2.9 6.2E-05 36.0 4.5 33 3-36 178-210 (311)
238 KOG0024 Sorbitol dehydrogenase 80.2 2.8 6.1E-05 36.9 4.4 30 93-123 242-271 (354)
239 PRK15057 UDP-glucose 6-dehydro 80.2 2.5 5.4E-05 37.8 4.2 38 5-47 2-39 (388)
240 PF07991 IlvN: Acetohydroxy ac 79.9 3 6.4E-05 33.1 4.1 31 4-35 5-35 (165)
241 PRK07877 hypothetical protein; 79.8 1.1 2.3E-05 43.4 1.8 117 3-126 107-228 (722)
242 PRK08306 dipicolinate synthase 79.7 3.3 7.2E-05 35.5 4.7 30 4-34 153-182 (296)
243 PRK06444 prephenate dehydrogen 79.4 3.3 7.1E-05 33.6 4.3 33 4-36 1-40 (197)
244 cd08281 liver_ADH_like1 Zinc-d 79.3 7 0.00015 33.9 6.7 97 4-124 193-290 (371)
245 PRK04690 murD UDP-N-acetylmura 79.3 16 0.00036 33.2 9.3 31 4-36 9-39 (468)
246 PRK05597 molybdopterin biosynt 78.9 1.7 3.7E-05 38.3 2.7 33 3-36 28-60 (355)
247 PLN02586 probable cinnamyl alc 78.9 12 0.00025 32.5 8.0 30 5-35 186-215 (360)
248 PRK11199 tyrA bifunctional cho 78.8 2.9 6.3E-05 37.0 4.1 29 4-33 99-128 (374)
249 cd01484 E1-2_like Ubiquitin ac 78.5 1.7 3.7E-05 36.2 2.5 31 5-36 1-31 (234)
250 PLN02494 adenosylhomocysteinas 78.5 3.5 7.6E-05 38.0 4.6 30 4-34 255-284 (477)
251 PRK09260 3-hydroxybutyryl-CoA 78.4 3.5 7.6E-05 34.8 4.4 31 4-36 2-32 (288)
252 TIGR00936 ahcY adenosylhomocys 78.3 3.4 7.4E-05 37.3 4.5 29 4-33 196-224 (406)
253 PRK11908 NAD-dependent epimera 78.3 4.1 8.9E-05 34.9 4.9 32 4-35 2-34 (347)
254 PRK09496 trkA potassium transp 78.0 3.6 7.7E-05 36.7 4.6 30 4-34 1-30 (453)
255 PF13460 NAD_binding_10: NADH( 78.0 4.4 9.6E-05 31.0 4.6 30 6-36 1-31 (183)
256 TIGR01759 MalateDH-SF1 malate 77.9 6.4 0.00014 34.3 6.0 24 3-26 3-27 (323)
257 PLN02350 phosphogluconate dehy 77.9 2.4 5.3E-05 39.2 3.5 31 3-34 6-36 (493)
258 PRK06522 2-dehydropantoate 2-r 77.8 4.1 9E-05 34.1 4.7 30 4-34 1-30 (304)
259 cd01339 LDH-like_MDH L-lactate 77.8 5.5 0.00012 33.9 5.5 31 6-37 1-31 (300)
260 PRK07531 bifunctional 3-hydrox 77.7 3.9 8.5E-05 37.6 4.8 31 4-36 5-35 (495)
261 PRK03806 murD UDP-N-acetylmura 77.7 22 0.00047 31.7 9.5 89 4-125 7-95 (438)
262 PRK11730 fadB multifunctional 77.7 2.2 4.8E-05 41.1 3.3 31 4-36 314-344 (715)
263 PRK05600 thiamine biosynthesis 77.5 1.5 3.4E-05 38.9 2.1 110 3-119 41-158 (370)
264 PRK08268 3-hydroxy-acyl-CoA de 77.3 4.2 9.1E-05 37.6 4.9 31 4-36 8-38 (507)
265 PRK00141 murD UDP-N-acetylmura 77.2 21 0.00045 32.5 9.3 31 4-36 16-46 (473)
266 PRK06719 precorrin-2 dehydroge 77.2 32 0.00068 26.6 10.2 30 4-34 14-43 (157)
267 TIGR03201 dearomat_had 6-hydro 77.1 35 0.00077 29.2 10.4 139 4-168 168-312 (349)
268 COG1179 Dinucleotide-utilizing 77.1 2.7 5.9E-05 35.6 3.2 116 4-127 31-155 (263)
269 TIGR01087 murD UDP-N-acetylmur 76.9 18 0.00039 32.2 8.7 30 5-36 1-30 (433)
270 KOG3923 D-aspartate oxidase [A 76.9 3.4 7.4E-05 36.1 3.9 37 1-37 1-43 (342)
271 cd00704 MDH Malate dehydrogena 76.7 7.1 0.00015 34.0 5.9 23 4-26 1-24 (323)
272 cd05292 LDH_2 A subgroup of L- 76.7 4.5 9.8E-05 34.8 4.7 33 4-36 1-33 (308)
273 PRK03659 glutathione-regulated 76.3 4.9 0.00011 37.9 5.2 39 4-46 401-439 (601)
274 TIGR02371 ala_DH_arch alanine 76.3 6.4 0.00014 34.2 5.5 34 4-37 129-162 (325)
275 COG1064 AdhP Zn-dependent alco 76.2 22 0.00048 31.4 8.9 131 4-168 168-301 (339)
276 TIGR01470 cysG_Nterm siroheme 76.1 34 0.00073 27.7 9.4 30 4-34 10-39 (205)
277 PRK02006 murD UDP-N-acetylmura 75.8 25 0.00054 32.1 9.5 31 4-36 8-38 (498)
278 PRK15182 Vi polysaccharide bio 75.6 3.9 8.5E-05 36.9 4.2 30 3-34 6-35 (425)
279 PLN03209 translocon at the inn 75.6 15 0.00033 34.7 8.1 31 4-35 81-112 (576)
280 PRK08219 short chain dehydroge 75.4 5.1 0.00011 31.5 4.4 33 1-35 1-34 (227)
281 PRK06545 prephenate dehydrogen 75.4 4.1 8.9E-05 35.7 4.1 22 5-26 2-23 (359)
282 PRK07066 3-hydroxybutyryl-CoA 75.1 5.8 0.00013 34.6 4.9 31 4-36 8-38 (321)
283 cd05191 NAD_bind_amino_acid_DH 75.0 8.6 0.00019 26.4 4.9 22 4-25 24-45 (86)
284 TIGR00873 gnd 6-phosphoglucona 75.0 3.6 7.7E-05 37.8 3.7 29 5-34 1-29 (467)
285 KOG0022 Alcohol dehydrogenase, 75.0 9.1 0.0002 33.8 6.0 97 4-123 194-293 (375)
286 PTZ00325 malate dehydrogenase; 75.0 5.8 0.00013 34.6 4.9 140 3-174 8-173 (321)
287 PRK01710 murD UDP-N-acetylmura 74.7 22 0.00047 32.1 8.7 31 4-36 15-45 (458)
288 COG0373 HemA Glutamyl-tRNA red 74.7 5.3 0.00012 36.2 4.7 32 4-35 179-210 (414)
289 TIGR00561 pntA NAD(P) transhyd 74.4 15 0.00032 34.3 7.6 31 4-36 165-195 (511)
290 TIGR03451 mycoS_dep_FDH mycoth 74.3 44 0.00095 28.7 10.3 30 4-34 178-208 (358)
291 PLN02353 probable UDP-glucose 74.3 5.7 0.00012 36.5 4.9 31 4-34 2-33 (473)
292 PLN02427 UDP-apiose/xylose syn 74.3 5.8 0.00013 34.6 4.8 33 3-35 14-47 (386)
293 PRK04663 murD UDP-N-acetylmura 74.2 25 0.00055 31.5 9.0 85 4-119 8-94 (438)
294 PLN02178 cinnamyl-alcohol dehy 74.1 22 0.00048 31.1 8.5 133 4-168 180-313 (375)
295 PRK03562 glutathione-regulated 73.7 6.1 0.00013 37.5 5.1 36 4-43 401-436 (621)
296 PLN02514 cinnamyl-alcohol dehy 73.7 29 0.00063 30.0 9.0 138 4-174 182-320 (357)
297 TIGR00243 Dxr 1-deoxy-D-xylulo 73.6 8.2 0.00018 34.7 5.6 112 4-125 2-124 (389)
298 PRK08655 prephenate dehydrogen 73.3 5.9 0.00013 35.9 4.7 30 4-34 1-31 (437)
299 PRK10083 putative oxidoreducta 73.1 19 0.00041 30.3 7.6 98 4-124 162-259 (339)
300 KOG2380 Prephenate dehydrogena 73.0 4.5 9.7E-05 36.1 3.7 24 3-26 52-75 (480)
301 TIGR02717 AcCoA-syn-alpha acet 72.9 16 0.00035 33.1 7.5 83 3-123 7-94 (447)
302 TIGR01381 E1_like_apg7 E1-like 72.6 2.1 4.6E-05 40.8 1.7 32 3-35 338-369 (664)
303 PLN02740 Alcohol dehydrogenase 72.4 11 0.00024 32.9 6.1 30 4-34 200-230 (381)
304 PRK05476 S-adenosyl-L-homocyst 72.3 6.1 0.00013 35.9 4.5 31 4-36 213-243 (425)
305 PF00899 ThiF: ThiF family; I 72.2 8.8 0.00019 28.5 4.8 106 3-114 2-113 (135)
306 PRK00258 aroE shikimate 5-dehy 72.1 29 0.00063 29.2 8.4 31 4-34 124-154 (278)
307 TIGR01757 Malate-DH_plant mala 71.7 8.4 0.00018 34.6 5.2 24 3-26 44-68 (387)
308 PRK10669 putative cation:proto 71.6 7.3 0.00016 36.2 5.0 31 4-35 418-448 (558)
309 TIGR01035 hemA glutamyl-tRNA r 71.6 6.7 0.00014 35.3 4.6 31 4-34 181-211 (417)
310 PRK06988 putative formyltransf 71.4 6.9 0.00015 33.9 4.5 33 1-35 1-33 (312)
311 PRK03803 murD UDP-N-acetylmura 71.3 28 0.0006 31.2 8.6 30 5-36 8-37 (448)
312 PRK02318 mannitol-1-phosphate 71.3 5.6 0.00012 35.2 4.0 31 4-34 1-31 (381)
313 KOG4354 N-acetyl-gamma-glutamy 71.3 12 0.00026 31.9 5.7 140 3-167 19-171 (340)
314 PRK12921 2-dehydropantoate 2-r 71.0 7.1 0.00015 32.8 4.4 30 4-34 1-30 (305)
315 cd01337 MDH_glyoxysomal_mitoch 70.9 7.9 0.00017 33.6 4.8 33 4-36 1-34 (310)
316 PF01073 3Beta_HSD: 3-beta hyd 69.8 24 0.00052 29.8 7.4 29 8-36 2-31 (280)
317 COG0743 Dxr 1-deoxy-D-xylulose 69.5 7.5 0.00016 34.7 4.3 41 4-45 2-44 (385)
318 PRK05678 succinyl-CoA syntheta 69.5 25 0.00055 30.2 7.5 87 3-123 8-95 (291)
319 TIGR02819 fdhA_non_GSH formald 69.5 23 0.0005 31.3 7.5 32 4-36 187-218 (393)
320 cd01485 E1-1_like Ubiquitin ac 69.2 4.6 9.9E-05 32.5 2.8 33 3-36 19-51 (198)
321 PRK07340 ornithine cyclodeamin 68.9 11 0.00024 32.3 5.3 33 4-36 126-158 (304)
322 COG1250 FadB 3-hydroxyacyl-CoA 68.8 7.4 0.00016 33.9 4.1 35 1-37 1-35 (307)
323 TIGR01763 MalateDH_bact malate 68.8 11 0.00023 32.5 5.1 33 4-37 2-34 (305)
324 COG1087 GalE UDP-glucose 4-epi 68.7 15 0.00033 32.2 5.9 32 5-37 2-34 (329)
325 PRK15181 Vi polysaccharide bio 68.7 9.4 0.0002 32.9 4.8 33 2-35 14-47 (348)
326 PRK08328 hypothetical protein; 68.6 8.9 0.00019 31.6 4.4 33 3-36 27-59 (231)
327 cd08255 2-desacetyl-2-hydroxye 68.4 47 0.001 26.9 8.8 86 4-119 99-185 (277)
328 PRK06153 hypothetical protein; 68.0 3.3 7.2E-05 37.2 1.8 30 4-33 177-206 (393)
329 cd00650 LDH_MDH_like NAD-depen 68.0 4.7 0.0001 33.6 2.7 21 6-26 1-22 (263)
330 PF01488 Shikimate_DH: Shikima 67.8 12 0.00027 27.9 4.8 94 4-126 13-109 (135)
331 cd08301 alcohol_DH_plants Plan 67.7 16 0.00035 31.5 6.1 31 4-35 189-220 (369)
332 PRK07878 molybdopterin biosynt 67.0 2.8 6E-05 37.4 1.2 33 3-36 42-74 (392)
333 cd05283 CAD1 Cinnamyl alcohol 67.0 60 0.0013 27.4 9.4 88 4-119 171-258 (337)
334 PRK14573 bifunctional D-alanyl 66.9 38 0.00082 33.1 9.0 34 1-36 1-36 (809)
335 PRK10309 galactitol-1-phosphat 66.8 23 0.00051 30.1 6.9 29 4-33 162-191 (347)
336 KOG1399 Flavin-containing mono 66.5 6.9 0.00015 35.8 3.6 30 2-32 5-34 (448)
337 TIGR00507 aroE shikimate 5-deh 66.3 39 0.00084 28.2 8.0 30 4-34 118-147 (270)
338 COG2084 MmsB 3-hydroxyisobutyr 65.9 9.8 0.00021 32.8 4.3 31 4-35 1-31 (286)
339 PLN00106 malate dehydrogenase 65.8 11 0.00025 32.8 4.7 34 3-36 18-52 (323)
340 PRK05708 2-dehydropantoate 2-r 65.6 11 0.00023 32.3 4.5 31 3-34 2-32 (305)
341 TIGR02279 PaaC-3OHAcCoADH 3-hy 65.5 10 0.00022 35.1 4.6 31 4-36 6-36 (503)
342 cd00300 LDH_like L-lactate deh 65.3 12 0.00026 32.1 4.7 31 6-36 1-31 (300)
343 PRK06019 phosphoribosylaminoim 65.3 12 0.00026 32.9 4.8 30 4-34 3-32 (372)
344 TIGR00518 alaDH alanine dehydr 64.5 12 0.00025 33.2 4.6 30 4-34 168-197 (370)
345 COG5322 Predicted dehydrogenas 64.5 39 0.00084 29.4 7.4 44 93-138 230-274 (351)
346 PLN02240 UDP-glucose 4-epimera 64.4 13 0.00028 31.7 4.7 32 3-35 5-37 (352)
347 PRK09496 trkA potassium transp 64.3 12 0.00025 33.4 4.6 30 4-34 232-261 (453)
348 PF01262 AlaDh_PNT_C: Alanine 64.3 16 0.00034 28.4 4.8 32 3-35 20-51 (168)
349 cd08277 liver_alcohol_DH_like 64.3 53 0.0011 28.3 8.6 30 4-34 186-216 (365)
350 cd08296 CAD_like Cinnamyl alco 64.2 30 0.00065 29.2 7.0 94 5-124 166-259 (333)
351 PRK07411 hypothetical protein; 64.0 4.1 9E-05 36.3 1.7 33 3-36 38-70 (390)
352 COG1893 ApbA Ketopantoate redu 63.6 97 0.0021 26.7 10.2 23 4-26 1-23 (307)
353 PF00670 AdoHcyase_NAD: S-aden 63.6 10 0.00022 29.9 3.7 87 4-128 24-112 (162)
354 cd08278 benzyl_alcohol_DH Benz 63.5 21 0.00046 30.8 6.0 94 4-120 188-281 (365)
355 PF00107 ADH_zinc_N: Zinc-bind 63.3 3.8 8.1E-05 29.7 1.1 70 92-165 57-127 (130)
356 PLN02827 Alcohol dehydrogenase 63.2 26 0.00055 30.7 6.5 29 4-33 195-224 (378)
357 PRK15076 alpha-galactosidase; 63.0 11 0.00024 34.2 4.2 14 4-17 2-15 (431)
358 cd01336 MDH_cytoplasmic_cytoso 62.9 15 0.00032 32.0 4.9 24 3-26 2-26 (325)
359 PRK07236 hypothetical protein; 62.6 13 0.00029 32.3 4.6 32 1-33 4-35 (386)
360 PRK14806 bifunctional cyclohex 62.5 13 0.00027 35.7 4.8 32 4-36 4-36 (735)
361 PRK02472 murD UDP-N-acetylmura 62.3 50 0.0011 29.4 8.3 31 4-36 6-36 (447)
362 PRK05653 fabG 3-ketoacyl-(acyl 62.0 21 0.00046 28.1 5.4 32 3-35 5-37 (246)
363 PRK00045 hemA glutamyl-tRNA re 61.7 14 0.0003 33.2 4.7 32 4-36 183-214 (423)
364 PRK06407 ornithine cyclodeamin 61.2 22 0.00047 30.6 5.6 34 4-37 118-151 (301)
365 COG0677 WecC UDP-N-acetyl-D-ma 61.2 9.9 0.00022 34.4 3.5 29 4-33 10-38 (436)
366 PLN00112 malate dehydrogenase 61.2 20 0.00043 32.8 5.5 23 3-25 100-123 (444)
367 PRK08223 hypothetical protein; 61.1 13 0.00028 32.1 4.1 98 3-104 27-128 (287)
368 PRK08291 ectoine utilization p 61.1 21 0.00046 30.9 5.5 33 4-36 133-165 (330)
369 PF02558 ApbA: Ketopantoate re 60.7 19 0.0004 26.9 4.6 30 6-36 1-30 (151)
370 TIGR02818 adh_III_F_hyde S-(hy 60.5 32 0.00069 29.8 6.6 30 4-34 187-217 (368)
371 COG0362 Gnd 6-phosphogluconate 60.5 11 0.00024 34.2 3.7 35 1-36 1-35 (473)
372 PRK00421 murC UDP-N-acetylmura 60.3 62 0.0013 29.1 8.6 31 4-36 8-39 (461)
373 TIGR02992 ectoine_eutC ectoine 60.3 21 0.00046 30.9 5.4 33 4-36 130-162 (326)
374 PRK14851 hypothetical protein; 60.1 4.3 9.3E-05 39.1 1.1 98 3-104 43-144 (679)
375 PRK05225 ketol-acid reductoiso 59.5 5.9 0.00013 36.5 1.8 27 4-31 37-63 (487)
376 PRK05586 biotin carboxylase; V 59.3 15 0.00032 33.1 4.4 31 4-35 3-33 (447)
377 PLN02858 fructose-bisphosphate 59.1 14 0.0003 38.6 4.6 31 4-36 325-355 (1378)
378 PLN00203 glutamyl-tRNA reducta 59.0 15 0.00033 34.2 4.5 31 3-34 266-297 (519)
379 PLN00198 anthocyanidin reducta 58.8 19 0.0004 30.7 4.8 32 2-34 8-40 (338)
380 PF04321 RmlD_sub_bind: RmlD s 58.8 20 0.00044 30.2 4.9 31 4-35 1-32 (286)
381 PRK06141 ornithine cyclodeamin 58.6 24 0.00053 30.3 5.5 33 4-36 126-158 (314)
382 cd08245 CAD Cinnamyl alcohol d 58.6 61 0.0013 27.1 7.9 31 4-35 164-194 (330)
383 cd08284 FDH_like_2 Glutathione 58.6 21 0.00046 30.1 5.1 29 4-33 169-198 (344)
384 cd08234 threonine_DH_like L-th 58.4 47 0.001 27.7 7.2 91 4-119 161-252 (334)
385 COG2423 Predicted ornithine cy 58.1 47 0.001 29.2 7.2 33 4-36 131-163 (330)
386 cd08254 hydroxyacyl_CoA_DH 6-h 58.0 37 0.0008 28.3 6.4 92 5-120 168-259 (338)
387 TIGR01772 MDH_euk_gproteo mala 57.8 17 0.00037 31.5 4.4 32 5-36 1-33 (312)
388 PLN02948 phosphoribosylaminoim 57.6 19 0.00041 33.9 5.0 32 2-34 21-52 (577)
389 cd05188 MDR Medium chain reduc 57.5 54 0.0012 26.0 7.1 31 4-35 136-166 (271)
390 cd08233 butanediol_DH_like (2R 57.4 1.2E+02 0.0026 25.7 10.0 30 4-34 174-204 (351)
391 PRK14620 NAD(P)H-dependent gly 56.8 20 0.00044 30.6 4.7 26 5-31 2-27 (326)
392 PRK07326 short chain dehydroge 56.4 23 0.00049 28.1 4.7 30 4-34 7-37 (237)
393 PLN00141 Tic62-NAD(P)-related 56.4 22 0.00048 28.9 4.7 31 4-35 18-49 (251)
394 cd08235 iditol_2_DH_like L-idi 55.8 44 0.00095 28.1 6.6 95 4-121 167-262 (343)
395 cd05279 Zn_ADH1 Liver alcohol 55.7 39 0.00085 29.1 6.3 29 4-33 185-214 (365)
396 cd08287 FDH_like_ADH3 formalde 55.5 97 0.0021 26.0 8.7 136 5-168 171-308 (345)
397 PRK05086 malate dehydrogenase; 55.1 23 0.00049 30.6 4.7 21 4-24 1-22 (312)
398 TIGR00514 accC acetyl-CoA carb 54.7 23 0.00049 31.9 4.8 32 1-34 1-32 (449)
399 cd08269 Zn_ADH9 Alcohol dehydr 54.4 49 0.0011 27.2 6.5 31 4-35 131-162 (312)
400 cd08289 MDR_yhfp_like Yhfp put 54.3 57 0.0012 27.1 7.0 94 5-124 149-243 (326)
401 cd08295 double_bond_reductase_ 54.3 50 0.0011 27.9 6.7 31 4-35 153-184 (338)
402 PLN02695 GDP-D-mannose-3',5'-e 54.2 25 0.00054 30.7 4.9 31 3-34 21-52 (370)
403 cd08294 leukotriene_B4_DH_like 54.2 40 0.00087 28.1 6.0 90 5-119 146-236 (329)
404 cd05284 arabinose_DH_like D-ar 53.9 61 0.0013 27.2 7.1 32 4-35 169-200 (340)
405 cd08293 PTGR2 Prostaglandin re 53.8 59 0.0013 27.4 7.0 31 4-35 156-188 (345)
406 PLN02702 L-idonate 5-dehydroge 53.6 49 0.0011 28.4 6.6 97 4-119 183-280 (364)
407 COG0702 Predicted nucleoside-d 52.9 23 0.0005 28.5 4.2 31 4-35 1-32 (275)
408 PF00070 Pyr_redox: Pyridine n 52.9 37 0.0008 22.5 4.6 29 5-34 1-29 (80)
409 TIGR01408 Ube1 ubiquitin-activ 52.9 21 0.00046 36.0 4.7 142 5-155 421-584 (1008)
410 cd08300 alcohol_DH_class_III c 52.6 1.4E+02 0.003 25.7 9.3 30 4-34 188-218 (368)
411 PRK03815 murD UDP-N-acetylmura 52.4 23 0.0005 31.6 4.4 29 4-35 1-29 (401)
412 PLN02657 3,8-divinyl protochlo 52.2 28 0.00061 30.8 4.9 32 3-35 60-92 (390)
413 PF13241 NAD_binding_7: Putati 52.2 31 0.00068 24.4 4.4 33 3-36 7-39 (103)
414 PLN03154 putative allyl alcoho 52.1 54 0.0012 28.2 6.6 31 4-35 160-191 (348)
415 PRK10675 UDP-galactose-4-epime 51.8 27 0.00058 29.5 4.6 31 4-35 1-32 (338)
416 cd08231 MDR_TM0436_like Hypoth 51.7 52 0.0011 28.1 6.4 31 4-35 179-210 (361)
417 COG4529 Uncharacterized protei 51.5 24 0.00052 32.6 4.4 34 4-37 2-36 (474)
418 PRK12825 fabG 3-ketoacyl-(acyl 51.5 33 0.00072 27.0 4.9 32 3-35 6-38 (249)
419 cd08262 Zn_ADH8 Alcohol dehydr 50.9 49 0.0011 27.8 6.1 32 4-36 163-194 (341)
420 PRK07688 thiamine/molybdopteri 50.8 32 0.0007 30.1 5.0 32 3-35 24-56 (339)
421 PRK14852 hypothetical protein; 50.8 13 0.00029 37.2 2.8 32 3-35 332-363 (989)
422 PF00743 FMO-like: Flavin-bind 50.7 24 0.00051 32.9 4.4 29 4-33 2-30 (531)
423 cd08285 NADP_ADH NADP(H)-depen 50.6 32 0.0007 29.2 5.0 29 4-33 168-197 (351)
424 cd08260 Zn_ADH6 Alcohol dehydr 50.6 65 0.0014 27.2 6.8 31 4-35 167-197 (345)
425 TIGR01771 L-LDH-NAD L-lactate 50.5 19 0.00042 30.9 3.5 29 8-36 1-29 (299)
426 PRK12439 NAD(P)H-dependent gly 50.4 26 0.00056 30.5 4.4 24 3-26 7-30 (341)
427 PLN02166 dTDP-glucose 4,6-dehy 50.3 28 0.0006 31.5 4.7 31 4-35 121-152 (436)
428 PLN02778 3,5-epimerase/4-reduc 50.1 45 0.00098 28.1 5.7 29 3-32 9-38 (298)
429 cd01080 NAD_bind_m-THF_DH_Cycl 50.0 50 0.0011 25.9 5.5 31 4-35 45-76 (168)
430 PRK05732 2-octaprenyl-6-methox 49.8 28 0.00061 30.1 4.5 35 1-35 1-37 (395)
431 cd08238 sorbose_phosphate_red 49.7 1.8E+02 0.004 25.5 9.8 74 92-168 256-331 (410)
432 cd08236 sugar_DH NAD(P)-depend 49.6 77 0.0017 26.6 7.1 30 5-35 162-192 (343)
433 COG0686 Ald Alanine dehydrogen 49.2 25 0.00055 31.1 4.0 43 4-48 169-212 (371)
434 TIGR03570 NeuD_NnaD sugar O-ac 48.9 33 0.00072 26.4 4.4 31 5-36 1-31 (201)
435 COG0059 IlvC Ketol-acid reduct 48.9 19 0.00042 31.6 3.2 25 4-29 19-43 (338)
436 PRK00676 hemA glutamyl-tRNA re 48.8 30 0.00066 30.5 4.5 31 4-34 175-205 (338)
437 PRK08125 bifunctional UDP-gluc 48.8 30 0.00064 32.9 4.8 32 4-35 316-348 (660)
438 PRK14989 nitrite reductase sub 48.8 29 0.00063 34.3 4.8 36 1-36 1-39 (847)
439 PRK10217 dTDP-glucose 4,6-dehy 48.4 31 0.00067 29.4 4.5 31 4-35 2-33 (355)
440 PRK09126 hypothetical protein; 48.3 29 0.00063 30.0 4.4 33 1-34 1-33 (392)
441 PLN02206 UDP-glucuronate decar 48.2 29 0.00062 31.4 4.4 31 4-35 120-151 (442)
442 PLN02858 fructose-bisphosphate 48.1 22 0.00047 37.2 3.9 31 4-36 5-35 (1378)
443 PRK12826 3-ketoacyl-(acyl-carr 47.9 36 0.00077 27.0 4.5 32 3-35 6-38 (251)
444 TIGR03855 NAD_NadX aspartate d 47.7 20 0.00044 29.6 3.1 33 93-126 37-69 (229)
445 PF02423 OCD_Mu_crystall: Orni 47.5 33 0.00072 29.6 4.5 33 4-37 129-162 (313)
446 TIGR03466 HpnA hopanoid-associ 47.2 31 0.00068 28.6 4.3 30 5-35 2-32 (328)
447 PRK06199 ornithine cyclodeamin 46.9 48 0.001 29.6 5.5 33 4-36 156-189 (379)
448 cd08292 ETR_like_2 2-enoyl thi 46.7 67 0.0015 26.5 6.2 32 4-36 141-173 (324)
449 PRK06823 ornithine cyclodeamin 46.2 50 0.0011 28.6 5.4 34 4-37 129-162 (315)
450 PRK14194 bifunctional 5,10-met 46.1 44 0.00096 29.0 5.0 32 4-36 160-192 (301)
451 cd08240 6_hydroxyhexanoate_dh_ 45.6 74 0.0016 26.9 6.4 92 4-119 177-269 (350)
452 PLN02896 cinnamyl-alcohol dehy 45.4 41 0.00088 28.8 4.8 31 4-35 11-42 (353)
453 PRK09291 short chain dehydroge 45.3 46 0.001 26.6 4.9 33 1-35 1-34 (257)
454 PRK07577 short chain dehydroge 45.2 47 0.001 26.2 4.8 33 1-34 1-34 (234)
455 TIGR01142 purT phosphoribosylg 45.0 33 0.00072 29.8 4.2 30 5-35 1-30 (380)
456 PRK08163 salicylate hydroxylas 44.9 38 0.00083 29.3 4.6 30 3-33 4-33 (396)
457 cd08252 AL_MDR Arginate lyase 44.8 1.1E+02 0.0024 25.4 7.3 96 4-123 151-247 (336)
458 PRK09288 purT phosphoribosylgl 44.6 45 0.00097 29.1 5.0 32 3-35 12-43 (395)
459 PLN02172 flavin-containing mon 43.9 37 0.00079 31.0 4.4 30 3-33 10-39 (461)
460 cd08263 Zn_ADH10 Alcohol dehyd 43.9 95 0.0021 26.6 6.9 30 5-35 190-220 (367)
461 KOG2250 Glutamate/leucine/phen 43.7 1.6E+02 0.0036 27.4 8.4 33 4-37 252-284 (514)
462 TIGR01181 dTDP_gluc_dehyt dTDP 43.5 33 0.00072 28.2 3.8 30 5-34 1-32 (317)
463 PRK04148 hypothetical protein; 43.4 34 0.00073 26.1 3.5 29 4-34 18-46 (134)
464 TIGR01161 purK phosphoribosyla 43.3 36 0.00079 29.4 4.2 29 5-34 1-29 (352)
465 PLN02572 UDP-sulfoquinovose sy 43.2 42 0.00092 30.3 4.7 30 4-34 48-78 (442)
466 PLN02260 probable rhamnose bio 43.2 40 0.00087 31.9 4.7 33 3-35 6-40 (668)
467 PRK11150 rfaD ADP-L-glycero-D- 42.9 55 0.0012 27.2 5.1 30 6-36 2-32 (308)
468 PRK09987 dTDP-4-dehydrorhamnos 42.9 37 0.00081 28.5 4.1 28 5-34 2-30 (299)
469 PRK06182 short chain dehydroge 42.8 53 0.0011 26.8 4.9 33 1-34 1-34 (273)
470 PRK01368 murD UDP-N-acetylmura 42.8 39 0.00084 30.7 4.4 29 4-35 7-35 (454)
471 TIGR03589 PseB UDP-N-acetylglu 42.6 47 0.001 28.3 4.7 32 3-34 4-37 (324)
472 PRK06180 short chain dehydroge 42.5 54 0.0012 26.9 4.9 32 3-35 4-36 (277)
473 PRK12827 short chain dehydroge 42.5 51 0.0011 26.1 4.7 31 3-34 6-37 (249)
474 TIGR01214 rmlD dTDP-4-dehydror 42.4 38 0.00082 27.8 4.0 29 5-34 1-30 (287)
475 COG0169 AroE Shikimate 5-dehyd 42.3 2.1E+02 0.0046 24.5 8.6 44 4-47 127-170 (283)
476 COG0683 LivK ABC-type branched 42.3 1.8E+02 0.004 25.1 8.5 29 148-176 124-152 (366)
477 PRK12829 short chain dehydroge 42.3 50 0.0011 26.5 4.7 31 3-34 11-42 (264)
478 cd05280 MDR_yhdh_yhfp Yhdh and 42.0 1.3E+02 0.0028 24.8 7.3 89 5-119 149-238 (325)
479 cd08286 FDH_like_ADH2 formalde 41.9 87 0.0019 26.4 6.2 30 4-33 168-197 (345)
480 PLN02686 cinnamoyl-CoA reducta 41.7 54 0.0012 28.6 5.0 34 2-36 52-86 (367)
481 PRK01390 murD UDP-N-acetylmura 41.7 43 0.00093 30.1 4.5 31 4-36 10-40 (460)
482 PRK08017 oxidoreductase; Provi 41.2 59 0.0013 26.0 4.9 31 4-35 3-34 (256)
483 PRK06914 short chain dehydroge 41.1 59 0.0013 26.5 5.0 34 1-35 1-35 (280)
484 COG0451 WcaG Nucleoside-diphos 41.0 47 0.001 27.3 4.4 30 5-35 2-32 (314)
485 PRK05565 fabG 3-ketoacyl-(acyl 40.8 57 0.0012 25.7 4.7 30 3-33 5-35 (247)
486 COG1086 Predicted nucleoside-d 40.8 46 0.001 31.5 4.5 34 4-37 117-150 (588)
487 PRK04308 murD UDP-N-acetylmura 40.7 56 0.0012 29.2 5.1 31 4-36 6-36 (445)
488 KOG2018 Predicted dinucleotide 40.6 75 0.0016 28.3 5.5 50 82-134 156-208 (430)
489 PRK08849 2-octaprenyl-3-methyl 40.2 48 0.001 28.8 4.5 33 1-34 1-33 (384)
490 PRK10084 dTDP-glucose 4,6 dehy 40.2 46 0.001 28.3 4.3 29 5-33 2-31 (352)
491 TIGR01751 crot-CoA-red crotony 39.6 2E+02 0.0044 25.0 8.4 30 4-34 191-221 (398)
492 PRK02705 murD UDP-N-acetylmura 39.6 46 0.00099 29.8 4.3 30 5-36 2-31 (459)
493 PRK08591 acetyl-CoA carboxylas 39.5 53 0.0011 29.4 4.7 32 1-34 1-32 (451)
494 PRK04965 NADH:flavorubredoxin 39.2 54 0.0012 28.5 4.6 34 1-35 1-35 (377)
495 PLN02214 cinnamoyl-CoA reducta 39.2 59 0.0013 27.9 4.8 31 4-35 11-42 (342)
496 PRK07589 ornithine cyclodeamin 39.1 72 0.0016 28.1 5.4 33 4-36 130-162 (346)
497 PRK07023 short chain dehydroge 39.0 56 0.0012 26.0 4.4 30 4-34 2-32 (243)
498 cd01492 Aos1_SUMO Ubiquitin ac 38.8 53 0.0011 26.3 4.2 33 3-36 21-53 (197)
499 cd08246 crotonyl_coA_red croto 38.8 2.5E+02 0.0055 24.2 8.8 30 4-34 195-225 (393)
500 PRK05562 precorrin-2 dehydroge 38.6 2.3E+02 0.0049 23.5 9.5 31 4-35 26-56 (223)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-71 Score=480.07 Aligned_cols=187 Identities=50% Similarity=0.875 Sum_probs=176.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC----CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEe-------CCCee
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTL 69 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~----~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~-------~~~~l 69 (188)
||++||||||||||||.++|+++++ +++|+|||||++.++++++|||||||+||+|+ ++++.+ +++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCCEE
Confidence 6778999999999999999998864 57999999998889999999999999999999 899872 34479
Q ss_pred EECCEEEEEE-eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCC-CC
Q 029791 70 LFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-EL 146 (188)
Q Consensus 70 ~i~g~~i~v~-~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~-~~ 146 (188)
.+||++|.++ +++||+++||+++|+|||+||||.|++++.++.|+++||||||||+|++| .||||+|||++.|++ .+
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 99999999999999999999999999999999999999999999999887 689999999999997 57
Q ss_pred ceEEcCChhhHhHHHHHHHH-HhhcCceEEEEEEEeeccCCCC
Q 029791 147 NIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 147 ~iis~~sCtT~~lap~l~~l-~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+||||+|||||||||++|+| |++|||++++|||+||||++|+
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~ 202 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQK 202 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcc
Confidence 89999999999999999999 7999999999999999999996
No 2
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-66 Score=448.67 Aligned_cols=185 Identities=64% Similarity=1.026 Sum_probs=176.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+ +||||||||||||.++|++++++++++|+|||+..++++++|||||||+||+|+ ++++.+++ .|.+||++|++++
T Consensus 1 m~-~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MV-VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFF 77 (337)
T ss_pred Cc-eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEe
Confidence 54 899999999999999999988888999999998889999999999999999999 99998665 6999999999999
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCCCCceEEcCChhhHhH
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~l 159 (188)
++||+++||++.|+|+||||||.|+++++++.|+++|||||++|+|.++ +|+||||||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 9999999999999999999999999999999999999999999999775 799999999999987778999999999999
Q ss_pred HHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 160 APLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 160 ap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+|++|+||++|||+++.||||||+|++|+
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q~ 186 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQL 186 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCce
Confidence 99999999999999999999999999994
No 3
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.8e-65 Score=439.47 Aligned_cols=183 Identities=54% Similarity=0.932 Sum_probs=173.8
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+ +||||||||||||.++|++++++++|+|||||+ .++++++|||||||+||+|+ ++++.+++ .|.++|++|.+++
T Consensus 1 m~-~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~ 76 (331)
T PRK15425 1 MT-IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTA 76 (331)
T ss_pred Cc-eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEE
Confidence 53 799999999999999999988888999999996 69999999999999999999 99998665 6999999999999
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCCCCceEEcCChhhHhH
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~l 159 (188)
+++|+++||+++|+|+||||||.|+++++++.|+++|||||++|+|+++ +|+||||||++.|++ ++||||||||||||
T Consensus 77 ~~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~L 155 (331)
T PRK15425 77 ERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCL 155 (331)
T ss_pred cCChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999875 799999999999975 78999999999999
Q ss_pred HHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 160 APLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 160 ap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+|++|+||++|||+++.||||||||++|+
T Consensus 156 apvlk~L~~~fgI~~g~mTTvha~T~~q~ 184 (331)
T PRK15425 156 APLAKVINDNFGIIEGLMTTVHATTATQK 184 (331)
T ss_pred HHHHHHHHHhCCeEEEEEEEEEeccCccc
Confidence 99999999999999999999999999984
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=1.3e-64 Score=447.36 Aligned_cols=184 Identities=51% Similarity=0.846 Sum_probs=173.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcC--CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~--~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
++||||||||||||.++|+++++ +++|+|+|||+ .++++++|||||||+||+|+ ++++..+++.|.++|+.|++++
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEEE
Confidence 48999999999999999998865 67999999996 59999999999999999999 8998634557999999999999
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCCCCC-CceEEcCChhhH
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPE-LNIVSNASCTTN 157 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d--~p~~V~gvN~~~~~~~-~~iis~~sCtT~ 157 (188)
+++|+++||++.|+||||||||.|.++++++.|+++|||||++|+|.+| +|+||||||++.|++. ++||||||||||
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTN 232 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTN 232 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHH
Confidence 9999999999999999999999999999999999999999999999765 7999999999999875 789999999999
Q ss_pred hHHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 158 CLAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 158 ~lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
||+|++|+||++|||+++.||||||||+||+
T Consensus 233 cLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~ 263 (442)
T PLN02237 233 CLAPFVKVLDEEFGIVKGTMTTTHSYTGDQR 263 (442)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCCcc
Confidence 9999999999999999999999999999996
No 5
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-64 Score=437.18 Aligned_cols=182 Identities=28% Similarity=0.552 Sum_probs=172.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECC-EEEEEE
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g-~~i~v~ 79 (188)
|+ +||||||||||||.++|++++++++|+|+|||+..++++++|||||||+||+|++.+++.+++ .|.+|| ++|+++
T Consensus 1 m~-~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~ 78 (342)
T PTZ00353 1 LP-ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVS 78 (342)
T ss_pred CC-eEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEE
Confidence 43 799999999999999999988888999999998789999999999999999995148888554 699998 899999
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCCCCceEEcCChhhHhH
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~~~~iis~~sCtT~~l 159 (188)
++++|+++||+++++|+||||||.|++.+++..|+++|||||+|++|++|+|+||||||++.|++.++||||||||||||
T Consensus 79 ~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~L 158 (342)
T PTZ00353 79 AKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVAL 158 (342)
T ss_pred ecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987778999999999999
Q ss_pred HHHHHHHHhhcCceEEEEEEEeecc
Q 029791 160 APLAKVIHDKFGIVEGLMTTVHSIT 184 (188)
Q Consensus 160 ap~l~~l~~~~gI~~~~~ttiha~t 184 (188)
+|++|+||++|||++++|||||||+
T Consensus 159 apvlkvL~~~fGI~~g~mTTvHs~q 183 (342)
T PTZ00353 159 APVIRALHEVYGVEECSYTAIHGMQ 183 (342)
T ss_pred HHHHHHHHHhcCeeEEEeeeeeecc
Confidence 9999999999999999999999996
No 6
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-64 Score=430.74 Aligned_cols=182 Identities=57% Similarity=0.927 Sum_probs=175.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||||||||||+++|++.+++ ++|+|+|||+ .++++++|||+|||+||+|. ++++.++ +.+.|+|+.|+++.++
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~-~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKD-DALVVNGKGIKVLAER 78 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccC-CeEEECCceEEEEecC
Confidence 79999999999999999999998 7999999998 59999999999999999999 9988654 4799999999999999
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhC-CCcEEEEeCCCCC-CCeEEeecCccCCCCCCceEEcCChhhHhHH
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~-Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~la 160 (188)
+|+++||+++++|+|+||||.|+++|+++.|+++ |||||++|+|+++ +++||+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999987 9999999999999988899999999999999
Q ss_pred HHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 161 PLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 161 p~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|++|+|+++|||++++|||+|+||++|+
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~ 186 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQK 186 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCc
Confidence 9999999999999999999999999996
No 7
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.6e-64 Score=442.95 Aligned_cols=184 Identities=69% Similarity=1.117 Sum_probs=175.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||||||||||.++|++++++++++|+||||+.++++++|||||||+||+|+ ++++..+++.|.++|++|+++++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecCC
Confidence 699999999999999999987678999999999899999999999999999999 9998634457999999999999999
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCCCCceEEcCChhhHhHHHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLA 163 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~~~~iis~~sCtT~~lap~l 163 (188)
|++++|+++|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|++
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~l 244 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999877789999999999999999
Q ss_pred HHHHhhcCceEEEEEEEeeccCCCC
Q 029791 164 KVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 164 ~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|+||++|||+++.|||||++|++|+
T Consensus 245 k~L~~~fGI~~g~mTTvha~T~tQ~ 269 (421)
T PLN02272 245 KVVHEEFGILEGLMTTVHATTATQK 269 (421)
T ss_pred HHHHHhCCeEEEEEEEEEeccCccc
Confidence 9999999999999999999999995
No 8
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-64 Score=434.51 Aligned_cols=182 Identities=47% Similarity=0.817 Sum_probs=172.1
Q ss_pred cEEEEEccChHHHHHHHHHHcC--CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~--~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||||||||||||.++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++++.++ +.|.+||++|+++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~-~~l~v~g~~I~v~~~ 78 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADE-NSITVNGKTIKCVSD 78 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcC-CEEEECCEEEEEEEc
Confidence 6999999999999999998876 57999999997 59999999999999999999 9999855 479999999999999
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCCCC-CCceEEcCChhhHh
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNC 158 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d--~p~~V~gvN~~~~~~-~~~iis~~sCtT~~ 158 (188)
+||+++||+++|+|+||||||.|+++++++.|+++|||||++|+|++| +|+||||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999765 599999999999985 47899999999999
Q ss_pred HHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 159 lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|+|++|+||++|||+++.|||+||||++|+
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~ 188 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQR 188 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCcc
Confidence 999999999999999999999999999995
No 9
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5e-64 Score=434.33 Aligned_cols=184 Identities=45% Similarity=0.797 Sum_probs=173.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+ +||||||||||||.++|++++++++++|+|||+ .++++++|||||||+||+|+ ++++.++ +.|.|||++|++++
T Consensus 1 m~-~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~-~~l~v~g~~I~v~~ 76 (343)
T PRK07729 1 MK-TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFE-DHLLVDGKKIRLLN 76 (343)
T ss_pred Cc-eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecC-CEEEECCEEEEEEE
Confidence 54 899999999999999999988888999999997 59999999999999999999 9999855 47999999999999
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCC-CCceEEcCChhhHh
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNC 158 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~-~~~iis~~sCtT~~ 158 (188)
++||+++||++.++||||||||.|+++++++.|+++|||||++|+|++| ++++|+|||++.|++ .++|||||||||||
T Consensus 77 ~~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 77 NRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred cCChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999999776 567899999999987 47899999999999
Q ss_pred HHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 159 lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|+|++|+||++|||+++.||||||+|++|+
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~ 186 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAYTNDQK 186 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecccCccc
Confidence 999999999999999999999999999995
No 10
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.8e-63 Score=431.44 Aligned_cols=185 Identities=89% Similarity=1.385 Sum_probs=177.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCc-ceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~-~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||||||||||||.++|++.+.+++++++|||+..++++++|||||||+||+|+ + +++.++|+.|.++|++|+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 4799999999999999999988889999999999889999999999999999998 6 8988677789999999999999
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCCCCceEEcCChhhHhHHH
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~~~~iis~~sCtT~~lap 161 (188)
+||+++||++.|+||||||||.|+++++++.|+++|||||++|+|++|+|+||||||++.|++.++||||||||||||+|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999998777899999999999999
Q ss_pred HHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 162 LAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 162 ~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
++|+||++|||+++.||||||+|++|+
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~ 190 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQK 190 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCccc
Confidence 999999999999999999999999995
No 11
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=7.5e-63 Score=433.10 Aligned_cols=184 Identities=47% Similarity=0.789 Sum_probs=174.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcC--CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~--~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
++||||||||||||.++|++.++ +.+++++|||+. ++++++|||+|||+||+|+ ++++..+|+.|.+||++|++++
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCC-CHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEE
Confidence 47999999999999999999877 679999999974 8999999999999999999 8987656678999999999999
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCCCCceEEcCChhhHhH
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~l 159 (188)
++||+++||++.|+||||||||.|.+++.++.|+++|||||++|+|+++ +|+||||||++.|++.++||||||||||||
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L 217 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL 217 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence 9999999999999999999999999999999999999999999999765 899999999999987778999999999999
Q ss_pred HHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 160 APLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 160 ap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+|++|+||++|||+++.||||||||++|+
T Consensus 218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~ 246 (395)
T PLN03096 218 APFVKVLDQKFGIIKGTMTTTHSYTGDQR 246 (395)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEccccccc
Confidence 99999999999999999999999999995
No 12
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=7.7e-63 Score=425.86 Aligned_cols=182 Identities=57% Similarity=0.956 Sum_probs=172.5
Q ss_pred EEEEEccChHHHHHHHHHHcC--CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCE-EEEEEee
Q 029791 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~--~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~-~i~v~~~ 81 (188)
||||||||||||.++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++++.++++.|.++|+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999999877 47999999997 69999999999999999999 9999855425999999 9999999
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCCCCceEEcCChhhHhHH
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~la 160 (188)
++|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|++.++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 161 PLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 161 p~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|++|+||++|||+++.||||||+|++|+
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~ 186 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQN 186 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccc
Confidence 9999999999999999999999999984
No 13
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-61 Score=428.68 Aligned_cols=184 Identities=35% Similarity=0.607 Sum_probs=172.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcC----CCceEEEEe----cCCCchhhhhhhhhcccccCcCCCcceEEeC-CCeeEECC
Q 029791 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVN----DPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGE 73 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~----~~~~ivaIn----d~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~-~~~l~i~g 73 (188)
..||||||||||||+++|+++++ ++++++||| |. .++++++|||+|||+||+|+ ++++.++ ++.|++||
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing 204 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANG 204 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECC
Confidence 36999999999999999999876 579999996 44 58999999999999999999 8998852 45799999
Q ss_pred EEEEEEeecCCCCCCcccCCcc--EEEeecCcccCHHhHHHHHh-CCCcEEEEeCCCCC-CCeEEeecCccCCCCCCceE
Q 029791 74 KPVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNENEYKPELNIV 149 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vd--iV~e~tg~~~~~~~~~~h~~-~Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~ii 149 (188)
+.|+++++++|+++||+++|+| +|+||||.|.+++.+..|++ +||||||||+|++| +|+||||||++.|++.++||
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~II 284 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIV 284 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEE
Confidence 9999999999999999999999 99999999999999999999 89999999999886 89999999999998778899
Q ss_pred EcCChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 150 s~~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
||||||||||+|++|+||++|||++++|||+||||++|+
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~ 323 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQN 323 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChH
Confidence 999999999999999999999999999999999999995
No 14
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-61 Score=415.51 Aligned_cols=182 Identities=37% Similarity=0.735 Sum_probs=171.9
Q ss_pred cEEEEEccChHHHHHHHHHHcC---CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~---~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+||||||||||||.++|+++++ +++++++|||+ .++++++|||||||+||+|+ ++++.++ +.|.+||++|++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~-~~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQER-DQLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecC-CEEEECCEEEEEEE
Confidence 6999999999999999999875 47999999996 59999999999999999999 9998754 57999999999999
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-C-CCeEEeecCccCCCCCCceEEcCChhhHh
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNC 158 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~ 158 (188)
+++|+++||++.++|+||||||.|.+++.++.|+++|||+|++|+|++ | .++||||||++.|++.++|||||||||||
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999975 5 45899999999998777899999999999
Q ss_pred HHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 159 lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|+|++|+||++|||+++.||||||||++|+
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~ 188 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQ 188 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcc
Confidence 999999999999999999999999999995
No 15
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=8.2e-61 Score=414.27 Aligned_cols=182 Identities=40% Similarity=0.735 Sum_probs=172.6
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++||||||||||||.++|++.++++++++++||+..++++++|||||||+||+|+ ++++.+ |+.|.+||++|++++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~~-g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTAE-GDAIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEEc-CCEEEECCEEEEEEecC
Confidence 3899999999999999999998888999999998889999999999999999999 899874 45799999999999999
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCCCC-CCceEEcCChhhHhH
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNCL 159 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d--~p~~V~gvN~~~~~~-~~~iis~~sCtT~~l 159 (188)
+|++++|+ |+|+||||||.|.++++++.|+++|||||++|+|++| +|+||||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999997 9999999999999999999999999999999999764 699999999999987 378999999999999
Q ss_pred HHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 160 APLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 160 ap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+|++|+||++|||+++.||||||+|++|+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~ 186 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQT 186 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccc
Confidence 99999999999999999999999999995
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=7.2e-58 Score=395.15 Aligned_cols=181 Identities=38% Similarity=0.717 Sum_probs=170.1
Q ss_pred EEEEEccChHHHHHHHHHHcCC---CceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~---~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
||||||||||||.++|++++++ ++++++|||. .+.++++|||+|||+||+|+ ++++.++ +.|.++|+.|+++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~-~~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDG-DCLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeC-CEEEECCeEEEEEEc
Confidence 6999999999999999998764 6999999996 48999999999999999999 9998755 579999999999999
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-C-CCeEEeecCccCCCCCCceEEcCChhhHhH
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-d-~p~~V~gvN~~~~~~~~~iis~~sCtT~~l 159 (188)
++|+++||++.++|+||||||.|.+++.++.|+++|||+|++|+|.+ | .++||||||++.|++.++||||||||||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999965 4 458999999999987778999999999999
Q ss_pred HHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 160 APLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 160 ap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+|++|+||++|||+++.||||||+|++|+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~ 186 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQ 186 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcc
Confidence 99999999999999999999999999985
No 17
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=5.2e-54 Score=334.87 Aligned_cols=149 Identities=56% Similarity=0.997 Sum_probs=139.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||||||||||.++|+++.++++++++|||+.+++++++|||+|||+||+|+ .+++.+++ .|.++|++|+++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 599999999999999999999999999999999889999999999999999999 89998665 6999999999999999
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCCCCCCceEEcCCh
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASC 154 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d--~p~~V~gvN~~~~~~~~~iis~~sC 154 (188)
|+++||+++++|+|+||||.|.+++.++.|+++||||||+|+|++| +||||+|||++.|+++++|||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999987 8999999999999987799999999
No 18
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.3e-48 Score=304.23 Aligned_cols=148 Identities=55% Similarity=0.946 Sum_probs=140.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||+|||||||.++|.+.+.+++++++++|+ .++++++|||+|||+||+|. .+++.+++ .|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 489999999999999999988889999999997 69999999999999999999 88888665 6999999999999999
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-CCeEEeecCccCCCCCCceEEcCCh
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASC 154 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-~p~~V~gvN~~~~~~~~~iis~~sC 154 (188)
|+++||+++|+|+|+||||.|.+++.++.|+++||||||+|+|++| +++||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999987 5699999999999987779999999
No 19
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-50 Score=335.21 Aligned_cols=169 Identities=60% Similarity=1.039 Sum_probs=160.1
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCCCCCCcccCC
Q 029791 14 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 93 (188)
Q Consensus 14 iGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~~~~w~~~~ 93 (188)
|||+++ + +++++++++|||+++.++++|||+|||+||+|+ ++++++++ .++++|++|.++++++|..++|.+.+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 466665 2 556999999999999999999999999999999 99999776 48889999999999999999999999
Q ss_pred ccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCCCCceEEcCChhhHhHHHHHHHHHhhcCce
Q 029791 94 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (188)
Q Consensus 94 vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~~~~iis~~sCtT~~lap~l~~l~~~~gI~ 173 (188)
+|+|+|+||.|.+.+.+..|+++||||++||+|++|.||||+|||+++|++...||||+|||||||||+.|+||++|||.
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999877799999999999999999999999999
Q ss_pred EEEEEEEeeccCCCC
Q 029791 174 EGLMTTVHSITGIVN 188 (188)
Q Consensus 174 ~~~~ttiha~t~~q~ 188 (188)
+++|||+|++|++|+
T Consensus 155 EgLMtTvha~tatQk 169 (285)
T KOG0657|consen 155 EGLMTTVHAITATQK 169 (285)
T ss_pred cccccceeeeccccc
Confidence 999999999999996
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.4e-42 Score=300.19 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=143.6
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEecCCCchh---hhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD---YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 6 vgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~---~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
|||||||||||.++|++.+.+++++|+|||. +++ +++++++|||+|+.+. ..++++++ .+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecCC--------
Confidence 6999999999999999988889999999995 666 7888888999984333 35666443 4777654
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC--CCeEEeecCccCCCCCCceEEcCChhhHhHH
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d--~p~~V~gvN~~~~~~~~~iis~~sCtT~~la 160 (188)
++++. .++|+|++|||.|.+++.++.|++.|+|+|++++|++| +++||+|+|++.|.+.+ +||++|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 44443 37999999999999999999999999999999999887 57999999999998644 9999999999999
Q ss_pred HHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 161 PLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 161 p~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
|++++|+++|||++++|||+|+ |+||+
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~ 170 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN 170 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh
Confidence 9999999999999999999997 99995
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-36 Score=261.71 Aligned_cols=163 Identities=25% Similarity=0.307 Sum_probs=133.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhh---cccccCcCCCcceE-EeCCCeeEECCEEEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK---YDSVHGQWKHHELK-VKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~---yDS~~g~~~~~~v~-~~~~~~l~i~g~~i~v~ 79 (188)
+||||||+|||||.+++++.+.+++++++++|. ++++.+|+++ || .|++++ ...+ +. +..+.+.+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~-~~~~~~~-~~~i~V~~------ 70 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADP-EREKAFE-EAGIPVAG------ 70 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCc-ccccccc-CCceEEcC------
Confidence 799999999999999999998899999999996 5788899988 44 566665 3333 21 12243332
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-CC--CeEEeecCccCCCCCCceEEcCChhh
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DA--PMFVVGVNENEYKPELNIVSNASCTT 156 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-d~--p~~V~gvN~~~~~~~~~iis~~sCtT 156 (188)
+++++. .++|+|+||||.+.+.+.++.|+++| ++||+++|++ ++ .+||+|||++.+.+. ++|+++||||
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 233332 27999999999999999999999999 6788988864 33 358999999998753 4899999999
Q ss_pred HhHHHHHHHHHhhcCceEEEEEEEeeccC
Q 029791 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 157 ~~lap~l~~l~~~~gI~~~~~ttiha~t~ 185 (188)
|||+|+|++||++|||+++.|||+|++|.
T Consensus 143 ~~l~~~l~~L~~~fgI~~~~vTtv~a~td 171 (341)
T PRK04207 143 TGLCRTLCALDRAFGVKKVRATLVRRAAD 171 (341)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCC
Confidence 99999999999999999999999999985
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.95 E-value=1.1e-27 Score=205.60 Aligned_cols=153 Identities=21% Similarity=0.320 Sum_probs=128.0
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcc-eEEeCCCeeEECCEEEEE
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE-LKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~-v~~~~~~~l~i~g~~i~v 78 (188)
|.+++||| | .|.+||.+++.|.+++ |+ .+.+ +||. | . .+ .|+.+.|+|+.+.|
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-fp----------v~~l-~l~~--s--------~~~s--~gk~i~f~g~~~~V 55 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-LE----------IEQI-SIVE--I--------EPFG--EEQGIRFNNKAVEQ 55 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-Cc----------hhhe-eecc--c--------cccc--CCCEEEECCEEEEE
Confidence 66789999 9 7999999999998875 53 2333 4442 1 1 12 35679999999998
Q ss_pred EeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCC--CCceEEc
Q 029791 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSN 151 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~--~~~iis~ 151 (188)
. +.++.+|. ++|++|+ +|...++++++...++|| +|||++|. |+|++||+||++.+.. ..+||+|
T Consensus 56 ~---~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIan 127 (322)
T PRK06901 56 I---APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSL 127 (322)
T ss_pred E---ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEEC
Confidence 3 35556675 8999999 999999999999999999 89999973 6999999999998765 3579999
Q ss_pred CChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 152 ~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
|+|+|.+|++.|+|||+.|||+++.+|||||+|+.
T Consensus 128 PNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGa 162 (322)
T PRK06901 128 PDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYT 162 (322)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhc
Confidence 99999999999999999999999999999999975
No 23
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.92 E-value=4.4e-25 Score=190.00 Aligned_cols=153 Identities=24% Similarity=0.410 Sum_probs=122.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcC-CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCe-eEECCEEEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKT-LLFGEKPVTVFG 80 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~-~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~-l~i~g~~i~v~~ 80 (188)
+||||+| .|.+|+.+++.|.++ +.++.+. +|. ++.++ |+. +.++|+.+.+..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~-------------~~A----------S~rSa--G~~~~~f~~~~~~v~~ 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELV-------------LLA----------SARSA--GKKYIEFGGKSIGVPE 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEE-------------EEe----------ccccc--CCccccccCccccCcc
Confidence 6999999 799999999999885 3333222 221 22232 333 677777766522
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCC--CCc-eEEcC
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELN-IVSNA 152 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~--~~~-iis~~ 152 (188)
.-.+...|. ++||||+|.|...+++.++...++|+ +|||++|. |+|++||+||.+.+.. ... ||+||
T Consensus 57 -~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 -DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred -ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 115667776 89999999999999999999999998 99999873 7999999999997654 234 99999
Q ss_pred ChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 153 sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
+|||.+|++.|+||+++|+|+++.+|||||+|+.
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGA 165 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGA 165 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhc
Confidence 9999999999999999999999999999999975
No 24
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.92 E-value=4.8e-25 Score=191.52 Aligned_cols=149 Identities=24% Similarity=0.355 Sum_probs=123.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHc--CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~--~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+||+|+| .|.+|+.++|.|.+ .|.++++++.... + .|+.+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~------------------------~--~g~~l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR------------------------S--AGKELSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc------------------------c--CCCeeeeCCceeEEe-
Confidence 5999999 79999999999987 4667877775421 0 122344555555552
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCCC--CceEEcCC
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--LNIVSNAS 153 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~~--~~iis~~s 153 (188)
++...+|. ++|+||+|+|.+.+++.++.|+++|+ +||+.+++ ++|+++||+|++.++.. +++||||+
T Consensus 55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 44555684 89999999999999999999999999 78977653 47999999999998764 47999999
Q ss_pred hhhHhHHHHHHHHHhhcCceEEEEEEEeeccC
Q 029791 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 154 CtT~~lap~l~~l~~~~gI~~~~~ttiha~t~ 185 (188)
|+|+|++|.|+||+++|+|+++.|||+|++|+
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SG 160 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSG 160 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhh
Confidence 99999999999999999999999999999996
No 25
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.91 E-value=1.1e-24 Score=190.45 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=122.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||+| .|.+|+.+++.+.+.++|++..+ ++| .| ..+ .|+.+.++|+.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~-----------~~~--ss--------~~s--~g~~~~f~~~~~~v~--- 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP-----------VFF--ST--------SQL--GQAAPSFGGTTGTLQ--- 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE-----------EEE--Ec--------hhh--CCCcCCCCCCcceEE---
Confidence 3899999 79999999999985555642111 222 11 111 245677888877663
Q ss_pred CCCCC-CcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCCC--Cce--EEcC
Q 029791 83 NPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--LNI--VSNA 152 (188)
Q Consensus 83 ~p~~~-~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~~--~~i--is~~ 152 (188)
+.++. .|. ++|+||+|+|...+++.++...++|++.+|||++|+ |+|++||+||++.+... ..| |+||
T Consensus 55 ~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 55 DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 23333 454 899999999999999999999999944489999873 69999999999977642 557 8999
Q ss_pred ChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 153 sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
+|||..|++.|++||+.|+|+++.+|||||+|+.
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGA 166 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGG 166 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhc
Confidence 9999999999999999999999999999999974
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.91 E-value=8.6e-24 Score=184.13 Aligned_cols=150 Identities=24% Similarity=0.358 Sum_probs=117.6
Q ss_pred EEEEEc-cChHHHHHHHHHHcC--CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 5 KIGING-FGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~--~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
||+|+| .|.+|+.++|.+.++ |.++++.+... .+ .|+.+.+.|+.+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~------------------------~~--~g~~~~~~~~~~~~~~- 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD------------------------RS--AGRKVTFKGKELEVNE- 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc------------------------cc--CCCeeeeCCeeEEEEe-
Confidence 689999 799999999988774 44554443221 00 1333555555444422
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCCCC--CCceEEcCCh
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNASC 154 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-----~d~p~~V~gvN~~~~~~--~~~iis~~sC 154 (188)
-++ ..| .++|+||+|+|.+.+++.++.|+++|+ +||+.++ +|+|+++||||++.++. .+++||||+|
T Consensus 54 ~~~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 54 AKI--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred CCh--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 222 235 389999999999999999999999999 6898875 24899999999998875 2459999999
Q ss_pred hhHhHHHHHHHHHhhcCceEEEEEEEeeccCCC
Q 029791 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIV 187 (188)
Q Consensus 155 tT~~lap~l~~l~~~~gI~~~~~ttiha~t~~q 187 (188)
+|+|++++|+||+++|+|+++.|||+|++|+..
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG 160 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAG 160 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhcC
Confidence 999999999999999999999999999999864
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.88 E-value=8.2e-22 Score=171.80 Aligned_cols=154 Identities=18% Similarity=0.359 Sum_probs=124.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
.+||||+| .|.+|+.++|.+.+.|+|++.-+ +++ .| ..+ .|+.+.+.|+.+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l-----------~~~--aS--------~~s--aGk~~~~~~~~l~v~~- 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEV-----------TLL--SS--------KRS--AGKTVQFKGREIIIQE- 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccE-----------EEE--EC--------ccc--CCCCeeeCCcceEEEe-
Confidence 47999999 79999999999987777862211 111 11 112 2556777777666633
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCCCCceEEcCChhh
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPELNIVSNASCTT 156 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~~~~iis~~sCtT 156 (188)
-+++. |. ++|+||+|+|...+++.++...++|+ +||+.+++ |+|+++|+||.+.+....+||+||+|+|
T Consensus 61 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 34543 43 79999999999999999999989998 78998863 5999999999998875446999999999
Q ss_pred HhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 157 ~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
++++..|+||+++++|+++.++|+|++|+.
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGA 164 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGS 164 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeeccccc
Confidence 999999999999999999999999999974
No 28
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.87 E-value=1.6e-21 Score=169.59 Aligned_cols=152 Identities=24% Similarity=0.290 Sum_probs=125.5
Q ss_pred CccEEEEEc-cChHHHHHHHHHHc--CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEE
Q 029791 2 GKVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 2 ~~~kvgI~G-~GriGr~~~r~~~~--~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
+++||||+| .|.+|+.++|.|.+ .|.++++.+.... + .|+.+.++|+.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~------------------------s--aG~~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEE------------------------S--AGETLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccC------------------------c--CCceEEECCcceEE
Confidence 468999999 79999999999988 5778777764320 1 14456666766665
Q ss_pred EeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCC--CCceEEc
Q 029791 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSN 151 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~--~~~iis~ 151 (188)
. ++++++|. ++|+||+|+|...+.+.++...++|+ +||+.+++ +.|.++|++|.+.++. ..++|+|
T Consensus 57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAn 129 (336)
T PRK08040 57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAV 129 (336)
T ss_pred E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEEC
Confidence 3 56677785 79999999999999999999989999 68988753 5899999999954432 3579999
Q ss_pred CChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 152 ~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
|+|+|++++..|+||+++++|+++.++|++++|+.
T Consensus 130 PgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGA 164 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAH 164 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEEeecccccc
Confidence 99999999999999999999999999999999974
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.86 E-value=2.2e-21 Score=170.13 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=120.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCce---EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~---ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
+||||+| .|.+|+.++|.+++.++++ ++..... + ..++...++|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-------------------------~-sg~~~~~f~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-------------------------Q-AGGAAPSFGGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-------------------------h-hCCcccccCCCcceEE
Confidence 6999999 7999999999777666676 3332111 0 0122345667666664
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCCC--C--ceEE
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--L--NIVS 150 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~~--~--~iis 150 (188)
...+++. |. ++|+||+|+|...+++.++...++|++.+||+.+++ |+|++||+||.+.+... . ++|+
T Consensus 56 ~~~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDIDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 4333443 43 799999999999999999999899965589999873 69999999999977642 2 4899
Q ss_pred cCChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 151 ~~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
||+|+|++++..|+||+++++|+++.++|+|++|+.
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGA 167 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGA 167 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeeccccc
Confidence 999999999999999999999999999999999974
No 30
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.84 E-value=4e-20 Score=161.58 Aligned_cols=166 Identities=23% Similarity=0.324 Sum_probs=117.7
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEE-ecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEE
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaI-nd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
||++||+|+| .|.+|+.++|.+.+.|+++++++ .+.. +.... +++.++ +. .. +. +.-.-+.+.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~-~~G~~-----~~~~~~-~~-~~-----~~-~~~~~~~~~v 66 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASER-SAGKT-----YGEAVR-WQ-LD-----GP-IPEEVADMEV 66 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChh-hcCCc-----cccccc-cc-cc-----cc-ccccccceEE
Confidence 7789999999 89999999999999999999999 4321 11110 011110 00 00 00 0000012223
Q ss_pred EeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCCCC---------
Q 029791 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--------- 144 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-----~d~p~~V~gvN~~~~~~--------- 144 (188)
...+++. |. ++|+||+|++...+.+.++...+.|++ +|+.++ .+.|.+++++|++.|..
T Consensus 67 -~~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~ 139 (349)
T PRK08664 67 -VSTDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRG 139 (349)
T ss_pred -EeCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhcc
Confidence 2234544 32 789999999999988888877788984 454443 24789999999886632
Q ss_pred -CCceEEcCChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 145 -ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 145 -~~~iis~~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
..++||||+|+|+|+++.|+||++ |||+++.|||+|++|+.++
T Consensus 140 ~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~ 183 (349)
T PRK08664 140 WDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGY 183 (349)
T ss_pred CCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCc
Confidence 125999999999999999999999 9999999999999999864
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.83 E-value=9.9e-20 Score=158.47 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=120.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHc--CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE
Q 029791 3 KVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~--~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|+||+|+| .|.+|+.++|.|.+ .|.++++.+.... + .|+.+.++|+.+.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~------------------------~--aG~~l~~~~~~l~~- 56 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSE------------------------S--AGHSVPFAGKNLRV- 56 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcc------------------------c--CCCeeccCCcceEE-
Confidence 47999999 79999999999984 5777777775431 0 12334455544444
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC----CCCeEEeecCccCCCC--CCceEEcCC
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK----DAPMFVVGVNENEYKP--ELNIVSNAS 153 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~----d~p~~V~gvN~~~~~~--~~~iis~~s 153 (188)
.+++..+|. ++|+||.|+|...+.+.++...++|+ +||+.+++ |+|+++|++|.+.+.. ..++|+||+
T Consensus 57 --~~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPg 130 (336)
T PRK05671 57 --REVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPS 130 (336)
T ss_pred --eeCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCC
Confidence 223333453 79999999999999999998889998 58988763 6999999999998764 257999999
Q ss_pred hhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 154 CtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
|+|++++..|+||++.++++++.++|++++|+.
T Consensus 131 C~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGa 163 (336)
T PRK05671 131 ASAVALAVALAPLKGLLDIQRVQVTACLAVSSL 163 (336)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEeecCccc
Confidence 999999999999999999999999999999974
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.82 E-value=2.5e-19 Score=156.14 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=117.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCch-hhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~-~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||+|+| .|++|+.+++.+.++++++++++.+...+. +.+..++.+. .|+.+. ++ + ..+.+ +.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~--------~~---~--~~~~~-~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWI-EPGDMP--------EY---V--RDLPI-VE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhcccc-ccCCCc--------cc---c--ceeEE-Ee
Confidence 4899999 699999999999888889999997642111 1111111000 000000 00 0 11222 22
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCCCC---------CCc
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP---------ELN 147 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-----~d~p~~V~gvN~~~~~~---------~~~ 147 (188)
.+++ .| .++|+||+|++...+.+.++...++|++ +|+.++ +++|.+++++|++.|.. ..+
T Consensus 66 ~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~ 139 (341)
T TIGR00978 66 PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGF 139 (341)
T ss_pred CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCcc
Confidence 2333 23 3799999999999999999888889994 455543 24899999999987653 125
Q ss_pred eEEcCChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCCCC
Q 029791 148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIVN 188 (188)
Q Consensus 148 iis~~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~q~ 188 (188)
+|+||+|+|+|+++.|+||+++++|+++.+||+|++|+.++
T Consensus 140 iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~ 180 (341)
T TIGR00978 140 IVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGY 180 (341)
T ss_pred EEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCC
Confidence 99999999999999999999999999999999999999874
No 33
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.80 E-value=3.9e-19 Score=155.23 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=118.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHc--CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE
Q 029791 3 KVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~--~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
++||+|+| .|.+|+.++|.+.+ .|.+++..+.... + .|+.+.++|+.+.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~r------------------------s--aGk~~~~~~~~~~v- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASAR------------------------S--AGKKVTFEGRDYTV- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccC------------------------C--CCCeeeecCceeEE-
Confidence 57999999 79999999999987 5667766663321 0 12234444544444
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCCC------Cce
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE------LNI 148 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~~------~~i 148 (188)
..-+++ .|. ++|+||.|+|...+++.++...++|+ +||+.+++ +.|.++|++|.+.+... .++
T Consensus 60 ~~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 60 EELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred EeCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 222333 342 79999999999999999998888999 68988863 58999999999987652 249
Q ss_pred EEcCChhhHhHHHHHHHHHhhcCceEEEEEEEeeccCC
Q 029791 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGI 186 (188)
Q Consensus 149 is~~sCtT~~lap~l~~l~~~~gI~~~~~ttiha~t~~ 186 (188)
|+||+|+|++++..|+||+++++|+++.++|++++|+.
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGA 171 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGA 171 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeeccccc
Confidence 99999999999999999999999999999999999974
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.75 E-value=3e-17 Score=143.20 Aligned_cols=157 Identities=21% Similarity=0.249 Sum_probs=117.9
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|| +||+|+| .|.+|+.+++.+.+.|+++++++.+.....+.+.. .|+.+. + + . ...+
T Consensus 1 ~m-~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~------~~~~~~--------~--~-~---~~~~- 58 (343)
T PRK00436 1 MM-IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD------VHPHLR--------G--L-V---DLVL- 58 (343)
T ss_pred CC-eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH------hCcccc--------c--c-c---Ccee-
Confidence 54 7999999 59999999999999899999999874211111110 011111 0 0 0 0011
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC------C------------------CCeEEe
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------D------------------APMFVV 135 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~------d------------------~p~~V~ 135 (188)
. +.+...| .++|+||.|++.....+.+...+++|+ .||+.+++ | .|..+|
T Consensus 59 ~--~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 E--PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred e--cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 1 1222233 369999999999999999998888887 78988752 2 589999
Q ss_pred ecCccCCCCCCceEEcCChhhHhHHHHHHHHHhhcCce--EEEEEEEeeccCC
Q 029791 136 GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITGI 186 (188)
Q Consensus 136 gvN~~~~~~~~~iis~~sCtT~~lap~l~~l~~~~gI~--~~~~ttiha~t~~ 186 (188)
++|.+.+.. .++|+||+|+|++++..|+||++..+|+ ++.++|++++|+.
T Consensus 133 e~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGa 184 (343)
T PRK00436 133 ELNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGA 184 (343)
T ss_pred ccCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccC
Confidence 999998874 5799999999999999999999998898 8999999999974
No 35
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.71 E-value=3.9e-17 Score=139.96 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=115.4
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+++||||+|+|.||+.++..+...++++++++.|+..+.+-+...-+ +|.- .. +++..- +
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~----~Gi~----~~--------~~~ie~-L-- 62 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR----LGVA----TS--------AEGIDG-L-- 62 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH----cCCC----cc--------cCCHHH-H--
Confidence 447999999999999998888888889999999998432222222111 2210 00 111000 0
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-CCCCeEEeecCccCCCC--CCceEEcCChhhH
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKP--ELNIVSNASCTTN 157 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-~d~p~~V~gvN~~~~~~--~~~iis~~sCtT~ 157 (188)
.+..+|. ++|+||+|||.....+.++..+++|+ .+|+..+ ...|++||+||.+.... ..++|++++|+|+
T Consensus 63 ---L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati 135 (302)
T PRK08300 63 ---LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATI 135 (302)
T ss_pred ---HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHH
Confidence 0111343 79999999999999999999999998 5666554 46999999999997654 3589999999999
Q ss_pred hHHHHHHHHHhhcCceEEEEEEEeecc
Q 029791 158 CLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (188)
Q Consensus 158 ~lap~l~~l~~~~gI~~~~~ttiha~t 184 (188)
.++..|+++++. ++.+.. +||++.|
T Consensus 136 ~~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 136 PIVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHhcccCcC-ceeeee-eeehhhc
Confidence 999999998765 888877 8999887
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.68 E-value=3.8e-16 Score=136.51 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=115.4
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+|. |.+|+.++|.+.+.|+++++++.+...+.... +...|+.+. +. . ...+ ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-----~~~~~~~l~--------~~---~---~~~~-~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-----VSEVHPHLR--------GL---V---DLNL-EPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-----hHHhCcccc--------cc---C---Ccee-ecC
Confidence 48999995 99999999999999999999886542111110 011111111 00 0 0111 112
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC------------------------CCCeEEeecC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------------------------DAPMFVVGVN 138 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~------------------------d~p~~V~gvN 138 (188)
++++ |.+ ++|+||.|+|...+.+.++..+++|+ +||+.+++ +.|..+|++|
T Consensus 61 ~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n 135 (346)
T TIGR01850 61 DEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH 135 (346)
T ss_pred CHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence 2322 222 78999999999999999998888886 67877642 3779999999
Q ss_pred ccCCCCCCceEEcCChhhHhHHHHHHHHHhhcCce--EEEEEEEeeccCC
Q 029791 139 ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITGI 186 (188)
Q Consensus 139 ~~~~~~~~~iis~~sCtT~~lap~l~~l~~~~gI~--~~~~ttiha~t~~ 186 (188)
.+.+.. .++|+||+|.|+++...|+||++++.|+ ++.++|++++|+.
T Consensus 136 ~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGa 184 (346)
T TIGR01850 136 REEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGA 184 (346)
T ss_pred HHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECccc
Confidence 888764 5799999999999999999999998887 7999999999974
No 37
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.66 E-value=5.9e-17 Score=134.98 Aligned_cols=166 Identities=19% Similarity=0.288 Sum_probs=119.3
Q ss_pred CCccEEE-EEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEE
Q 029791 1 MGKVKIG-ING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~~~kvg-I~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
|.-.|+| |.| .|.+|+.++-.|.++|.+++...-...-+.-.. |.+ -|+|. .+.- |--.-..+.|
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~-ya~-----a~~wk-qt~~------lp~~~~e~~V 67 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR-YAF-----AGNWK-QTDL------LPESAHEYTV 67 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc-eEe-----cccch-hccc------ccchhhhhhH
Confidence 5445777 999 799999999888899988765553221011110 111 12222 1111 1000123344
Q ss_pred EeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-----CCCCeEEeecCccCCCC---------
Q 029791 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--------- 144 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-----~d~p~~V~gvN~~~~~~--------- 144 (188)
++-+++.|. +.||||...+...+.|--+...++|. +|+|+.+ +++|++||.||+|.++.
T Consensus 68 -~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k 140 (361)
T KOG4777|consen 68 -EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGK 140 (361)
T ss_pred -hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCC
Confidence 334566654 89999999999988888888889998 8999985 35999999999997753
Q ss_pred --CCceEEcCChhhHhHHHHHHHHHhhc-CceEEEEEEEeeccCC
Q 029791 145 --ELNIVSNASCTTNCLAPLAKVIHDKF-GIVEGLMTTVHSITGI 186 (188)
Q Consensus 145 --~~~iis~~sCtT~~lap~l~~l~~~~-gI~~~~~ttiha~t~~ 186 (188)
..-||.|++|+|..+...||+||++| .|++..++|+||+|+.
T Consensus 141 ~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGA 185 (361)
T KOG4777|consen 141 MGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGA 185 (361)
T ss_pred CCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccC
Confidence 13499999999999999999999999 6999999999999874
No 38
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.66 E-value=9.1e-16 Score=132.36 Aligned_cols=138 Identities=15% Similarity=0.164 Sum_probs=109.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||||+| .|.+|+.++|.+.++|+++++++.... +..+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~----------------------------~~~~------------ 41 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK----------------------------RKDA------------ 41 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC----------------------------CCcc------------
Confidence 48999999 799999999999999999988875320 0001
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCC--CCceEEcCCh
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSNASC 154 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~--~~~iis~~sC 154 (188)
.+....|. ++|+||.|++...+++.++...++|+ +||+.+++ +.|..+|++|.+..+. ..++|+||+|
T Consensus 42 -~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC 116 (313)
T PRK11863 42 -AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGC 116 (313)
T ss_pred -cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCc
Confidence 01112343 68999999999999999998888999 68988753 5899999999764332 4679999999
Q ss_pred hhHhHHHHHHHHHhhcCceEEEEEEEeeccC
Q 029791 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 155 tT~~lap~l~~l~~~~gI~~~~~ttiha~t~ 185 (188)
.+++++..|+||+++..|++...++++++|+
T Consensus 117 ~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG 147 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSG 147 (313)
T ss_pred HHHHHHHHHHHHHHcCCcccCceEEEEEccc
Confidence 9999999999999976676665789999964
No 39
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.62 E-value=3.5e-15 Score=131.95 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=111.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||+|+| .|.+|+.++|.+.++|+++++.+.... .. |+- +.. ....+ .+....-+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~-sa-------------G~~----i~~-~~~~l--~~~~~~~~~- 95 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR-KA-------------GQS----FGS-VFPHL--ITQDLPNLV- 95 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh-hc-------------CCC----chh-hCccc--cCcccccee-
Confidence 47999999 799999999999999999999886531 00 110 000 00001 111111011
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----C--------CCeEEeecCccC-CC----
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----D--------APMFVVGVNENE-YK---- 143 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d--------~p~~V~gvN~~~-~~---- 143 (188)
+.+..+|. ++|+||.|+|...+.+.++. +++|+ +||+.+++ + .|..+|++|.+. |.
T Consensus 96 -~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~ 169 (381)
T PLN02968 96 -AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTEL 169 (381)
T ss_pred -cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchh
Confidence 12222342 79999999999988888887 57776 57877752 3 588899999874 53
Q ss_pred -----CCCceEEcCChhhHhHHHHHHHHHhhcCc--eEEEEEEEeeccCC
Q 029791 144 -----PELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITGI 186 (188)
Q Consensus 144 -----~~~~iis~~sCtT~~lap~l~~l~~~~gI--~~~~~ttiha~t~~ 186 (188)
...++|+||+|.|++++..|+||+++++| +++.+++++++|+.
T Consensus 170 ~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGA 219 (381)
T PLN02968 170 QREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGA 219 (381)
T ss_pred CHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeecccc
Confidence 23579999999999999999999999999 78999999999974
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.57 E-value=1.5e-14 Score=124.37 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=109.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
.||+|+| .|..|..++|.+..+|++|++.+.... . |. ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~----~-------------~~-----------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR----R-------------KD-----------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc----c-------------cC-----------------------cC
Confidence 4899999 799999999999999999999986531 0 10 00
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCCCC--CCceEEcCChh
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKP--ELNIVSNASCT 155 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~~~--~~~iis~~sCt 155 (188)
+++++ + .++|+||.|++...+++.++...++|+ +||+.+++ +.|..+|++|.+..+. ..++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 268999999999999999998888898 58888752 5899999998764432 46799999999
Q ss_pred hHhHHHHHHHHHhhcCceEEEEEEEeeccC
Q 029791 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 156 T~~lap~l~~l~~~~gI~~~~~ttiha~t~ 185 (188)
+++++..|+||+++..|++...+++++.|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999987777766799999986
No 41
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.56 E-value=2.7e-14 Score=121.86 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=112.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++||||+|.|+||+.++..+.+.++++++++.|+..+...+...-+ +|. . ..+++...-+ .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~----~Gi----~--------~~~~~~e~ll---~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE----LGV----K--------TSAEGVDGLL---A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH----CCC----C--------EEECCHHHHh---c
Confidence 3799999999999999888887788999999998433222221111 110 0 1111110000 1
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCC--CCceEEcCChhhHhHH
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLA 160 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~--~~~iis~~sCtT~~la 160 (188)
+ .++|+|++||+.....+.+...+++|+. |+.-.|....|++++.||.+.... ..++|++++|.|+.++
T Consensus 62 ~--------~dIDaV~iaTp~~~H~e~a~~al~aGk~-VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 62 N--------PDIDIVFDATSAKAHARHARLLAELGKI-VIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred C--------CCCCEEEECCCcHHHHHHHHHHHHcCCE-EEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 1 2689999999999999999999999982 444455567999999999886553 4689999999999999
Q ss_pred HHHHHHHhhcCceEEEEEEEeeccC
Q 029791 161 PLAKVIHDKFGIVEGLMTTVHSITG 185 (188)
Q Consensus 161 p~l~~l~~~~gI~~~~~ttiha~t~ 185 (188)
..++.+++...+ ..++||++.+.
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999987755 56788999885
No 42
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.09 E-value=9.4e-11 Score=87.70 Aligned_cols=111 Identities=24% Similarity=0.318 Sum_probs=78.0
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCch-hhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~-~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
||+|+| +|.+|+.++|.+.+.|+++++.+.....+. ..+... ++.+. + . ..+.+ +..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~------~~~~~-~------~-------~~~~~-~~~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEV------FPHPK-G------F-------EDLSV-EDA 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHT------TGGGT-T------T-------EEEBE-EET
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehh------ccccc-c------c-------cceeE-eec
Confidence 799999 999999999999999999999998764211 112111 21111 0 0 11222 112
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-----CCCeEEeecCccCC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEY 142 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~ 142 (188)
+++.+ .++|+||.|++...+.+.++..++.|+ .||+.++. +.|+.+|++|.+.+
T Consensus 60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i 118 (121)
T PF01118_consen 60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQI 118 (121)
T ss_dssp SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHH
T ss_pred chhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHH
Confidence 33333 389999999999999999999999999 68888763 48999999998765
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.60 E-value=5.2e-07 Score=78.63 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=93.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
|+||+|+| .|..|-.++|.+..+|++|+..+.... ....- +...|..+. |. + ..++ +.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~-~~g~~-----~~~~~p~l~--------g~---~---~l~~-~~ 60 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE-RAGKP-----VSDVHPNLR--------GL---V---DLPF-QT 60 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh-hcCCc-----hHHhCcccc--------cc---c---cccc-cc
Confidence 48999999 799999999999999999966665431 00000 001111111 10 0 0111 22
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCC-----------------C----CeEEee---c
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-----------------A----PMFVVG---V 137 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d-----------------~----p~~V~g---v 137 (188)
.+++++ ...++|+||.|++...+++.++..++.|+| ||+.+.+- . .--||| .
T Consensus 61 ~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl 136 (349)
T COG0002 61 IDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPEL 136 (349)
T ss_pred CChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCccc
Confidence 344444 234689999999999999999999999995 78776420 0 134443 3
Q ss_pred CccCCCCCCceEEcCChhhHhHHHHHHHHHhh
Q 029791 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDK 169 (188)
Q Consensus 138 N~~~~~~~~~iis~~sCtT~~lap~l~~l~~~ 169 (188)
|.+++. ..+.|+||.|-.+|....|+||-+.
T Consensus 137 ~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 137 HREKIR-GAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred CHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc
Confidence 444443 3578999999999999999999876
No 44
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.48 E-value=4e-07 Score=67.75 Aligned_cols=111 Identities=22% Similarity=0.227 Sum_probs=69.1
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
|+||+| .|++|+.+++.+.+.++++++++.+.. .+. ...++ ..+++.. .+ +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~--~~~-~~~~~--~~~~~~~----------~~--------~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA--RSA-GKRVS--EAGPHLK----------GE--------VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech--hhc-CcCHH--HHCcccc----------cc--------cc--cc
Confidence 689999 599999999999988889999996531 110 00000 0011100 00 00 11
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHH---HHHhCCCcEEEEeCCCC-----CCCeEEeecCccCC
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAPSK-----DAPMFVVGVNENEY 142 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~---~h~~~Gakkviis~ps~-----d~p~~V~gvN~~~~ 142 (188)
.+..+|...+.|+||.|++.....+... ..++.|+ ++|+.++. +.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2222344458899999999887776433 2335565 78877652 57999999997754
No 45
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.38 E-value=1.4e-06 Score=75.69 Aligned_cols=92 Identities=26% Similarity=0.362 Sum_probs=65.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+++||||+|+|+||+.+++++...|+++++++.|.. +++.+. .. .+ ++.
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~-----~~-~~-----------------------v~~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD-----TE-TP-----------------------VYA 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh-----hc-CC-----------------------ccc
Confidence 7779999999999999999999988999999999974 222221 00 00 000
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
..+... +. .++|+|+-|++.....+.+...+++|.. ||.+.+
T Consensus 51 ~~d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~ 92 (324)
T TIGR01921 51 VADDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFD 92 (324)
T ss_pred cCCHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCC
Confidence 011111 11 3689999999999999999999999985 555443
No 46
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.32 E-value=2.3e-06 Score=72.35 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=83.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||||+|+|+||+.+++.+.+.++++++++.+.....+..... . +. + +.++ .+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~--------------~----~~-----~--~~~~--~d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRA--------------L----GE-----A--VRVV--SS 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhh--------------h----cc-----C--Ceee--CC
Confidence 6999999999999999999888889999998642111111000 0 00 1 1121 23
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC-CCCeEEeecCccCCCCCCc-eEEcCChhhHhHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPELN-IVSNASCTTNCLAP 161 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~-d~p~~V~gvN~~~~~~~~~-iis~~sCtT~~lap 161 (188)
.+.+ +.++|+|+|||+.....+.+...+++|.. |++-.|.+ .++-+...+..-.-....+ .+.++. .....
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga---~gg~d 127 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISVGALADEALRERLEQAAEAGGARLHLLSGA---IGGID 127 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChH---hhCHH
Confidence 4444 23689999999998888999999999975 45444431 1111100010000001112 222221 23355
Q ss_pred HHHHHHhhcCceEEEEEEEeecc
Q 029791 162 LAKVIHDKFGIVEGLMTTVHSIT 184 (188)
Q Consensus 162 ~l~~l~~~~gI~~~~~ttiha~t 184 (188)
+++... ..|++.+.+++.+...
T Consensus 128 ~l~~~~-~g~~~~v~~~~~k~p~ 149 (265)
T PRK13303 128 ALAAAK-EGGLDEVTYTGRKPPK 149 (265)
T ss_pred HHHHHH-hCCceEEEEEEecChh
Confidence 555433 4679999988876543
No 47
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.24 E-value=5e-06 Score=70.58 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=61.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHc-CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~-~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 79 (188)
|+++||||+|+|+||+.+++.+.. .++++++++.|+. ++....+.+ -+|. .. .
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~--~~~a~~~a~---~~g~----------~~----------~- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD--PQRHADFIW---GLRR----------PP----------P- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC--HHHHHHHHH---hcCC----------Cc----------c-
Confidence 557899999999999999999987 4789999999983 333211111 0110 00 0
Q ss_pred eecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 80 ~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
..+++++.+ ++|+|++|++...-.+.+...+++|..
T Consensus 58 -~~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 58 -VVPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred -cCCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 022333322 579999999998888888888998864
No 48
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.23 E-value=2.7e-06 Score=71.99 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=61.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+| +|++|+.+++.+.+.++++++++.|.. +.+.. .+|. +... + +.-.| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~~-------~~~~---~--~~~~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTDA-------GELA---G--IGKVG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCCH-------HHhc---C--cCcCC--ceee--C
Confidence 6999999 799999999999988999999999942 22111 0010 1100 0 00001 1221 2
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
+++.+ ...+|+|+|+|......+.+...+++|.. +|+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 34333 13589999999988888888989999875 455
No 49
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.23 E-value=4.4e-06 Score=70.74 Aligned_cols=90 Identities=24% Similarity=0.360 Sum_probs=64.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcC--CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~--~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
..||||+|||.||+.+++.+... +.++++++++.. ++....+. +. ..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~--~~~~~~~~------------------~~--------~~~-- 51 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA--ADLPPALA------------------GR--------VAL-- 51 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC--HHHHHHhh------------------cc--------Ccc--
Confidence 48999999999999999988753 359999999873 22211110 00 011
Q ss_pred ecCCCCC-CcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 81 VRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 81 ~~~p~~~-~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
..+++++ .| .+|+|+||.+...-+++++..|++|+.-+++|-
T Consensus 52 ~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~Sv 94 (267)
T PRK13301 52 LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSA 94 (267)
T ss_pred cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEECh
Confidence 1334443 44 689999999999999999999999998666653
No 50
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.96 E-value=3.7e-05 Score=67.25 Aligned_cols=34 Identities=35% Similarity=0.720 Sum_probs=29.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC---------CceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~---------~~~ivaInd~ 36 (188)
++||||+|+|.||+.+++.+.+.+ ++++++|.|.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 589999999999999999887552 6999999985
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.94 E-value=3.6e-05 Score=63.80 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=64.7
Q ss_pred cEEEEEccChHHHHHHHHHHcC-CCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~-~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
++|||+|+|.||..+++.+.+- -+++++++.|. +.+..-.+.+ | +.++.. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~~--~-------------------~~~~~~-----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELEA--S-------------------VGRRCV-----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHHh--h-------------------cCCCcc-----c
Confidence 4899999999999999988754 36999999997 4444433321 1 111110 1
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
+.+++- .++|+++||++..--++.+++.|++|..-.|+|-.
T Consensus 53 ~ide~~---~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 53 DIDELI---AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred cHHHHh---hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence 111111 37899999999988889999999999987677765
No 52
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.94 E-value=1.9e-05 Score=59.38 Aligned_cols=92 Identities=32% Similarity=0.370 Sum_probs=56.0
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
|||+|+|+ ||+||.+++.+.+.++++++++.|...+. . .|+-- +++. + .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-~----------~g~d~-g~~~---~----~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-K----------VGKDV-GELA---G----IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-T----------TTSBC-HHHC---T----SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-c----------ccchh-hhhh---C----cCCcccccc--h
Confidence 59999998 99999999999999999999999974211 0 11111 1100 0 000011111 2
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
+.+.+. ..+|+++|.|-.....+.++..++.|.+
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 233221 1389999999777777788888888875
No 53
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.93 E-value=4.8e-05 Score=64.29 Aligned_cols=91 Identities=27% Similarity=0.385 Sum_probs=62.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||||+|+|+||+.+++.+.+.+ +++++++.|+ +.+....+.+ .. + . ..+ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~-------------~~--~------~---~~~--~ 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS-------------KT--G------A---KAC--L 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH-------------hc--C------C---eeE--C
Confidence 59999999999999999988764 7999999998 3443322211 00 1 0 011 2
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
+.+++. .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 333333 2689999999988888888888888865 444333
No 54
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.89 E-value=3e-05 Score=65.22 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=57.3
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+|+ |+||+.+++.+.+.++++++++.|.. ++..... +. . .+.. ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~--~~~~~~~---~~--------------~--------~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP--GSPLVGQ---GA--------------L--------GVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--Ccccccc---CC--------------C--------Cccc--cC
Confidence 69999997 99999999998888889999999973 2211000 00 0 0000 12
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
+.+.+. . ++|+|+|+|......+.+...+++|.. |++
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 222221 1 578888888877777888888888875 444
No 55
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.86 E-value=6.1e-05 Score=55.12 Aligned_cols=93 Identities=29% Similarity=0.477 Sum_probs=65.7
Q ss_pred cEEEEEccChHHHHHHHHHHcC-CCceEEEEecCCCchhhhhhhhh-cccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~-~~~~ivaInd~~~~~~~~~~l~~-yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+||||+|+|.+|+.+++++... +++++++|.|+ +++......+ |.. . . +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~~~~~--------~-~--------~---------- 51 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFAEKYGI--------P-V--------Y---------- 51 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHHHHTTS--------E-E--------E----------
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHHHHhcc--------c-c--------h----------
Confidence 5999999999999999999876 78999999998 4433322111 111 0 1 1
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps 127 (188)
.+.+++ +...++|+|+-||+.....+.+...+++|. -|++.-|-
T Consensus 52 ~~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 52 TDLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SSHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred hHHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 112222 122378999999999998999999999998 57777663
No 56
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.84 E-value=2.8e-05 Score=70.00 Aligned_cols=93 Identities=22% Similarity=0.349 Sum_probs=57.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC---------CceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEE
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~---------~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i 71 (188)
|+++||||+|+|.+|+.+++.+.+++ ++++++|.|.. .+.. .-+.+ . +
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~--~~~~-~~~~~-------~--------~----- 57 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD--LEKD-RGVDL-------P--------G----- 57 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC--hhhc-cCCCC-------c--------c-----
Confidence 77799999999999999988875432 68999999863 2211 00000 0 0
Q ss_pred CCEEEEEEeecCCCCCCcccCCccEEEeecCcc-cCHHhHHHHHhCCCcEEEEeC
Q 029791 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 72 ~g~~i~v~~~~~p~~~~w~~~~vdiV~e~tg~~-~~~~~~~~h~~~Gakkviis~ 125 (188)
..++ .+++++ ..+.++|+|+||||.. ...+.....+++|. -|+++
T Consensus 58 ----~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 ----ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred ----ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 0010 122222 1234789999999864 34567778888886 45553
No 57
>PRK11579 putative oxidoreductase; Provisional
Probab=97.80 E-value=9.8e-05 Score=64.27 Aligned_cols=94 Identities=24% Similarity=0.399 Sum_probs=64.4
Q ss_pred CC-ccEEEEEccChHHH-HHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEE
Q 029791 1 MG-KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (188)
Q Consensus 1 m~-~~kvgI~G~GriGr-~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v 78 (188)
|+ ++||||+|+|.||+ .+++++...+++++++|.|+ +.+... -+| . .. .+
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~--~~~-------~-~~----------------~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVK--ADW-------P-TV----------------TV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHH--hhC-------C-CC----------------ce
Confidence 54 58999999999998 46787777788999999998 343321 011 1 00 00
Q ss_pred EeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
+ .+.+++- .+.++|+|+-||+.....+.+...+++|. -|++--|
T Consensus 53 ~--~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 53 V--SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred e--CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 0 1222221 12378999999999999999999999996 4666656
No 58
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00058 Score=57.78 Aligned_cols=96 Identities=26% Similarity=0.319 Sum_probs=61.6
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
++||+|+|+ ||+||.+.+++.+.|++++++.-|...+. ..|+-. ++.- + ++-..+.++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----------~~g~d~-ge~~---g----~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----------SLGSDA-GELA---G----LGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----------ccccch-hhhc---c----ccccCceee--
Confidence 489999995 99999999999999999999998863111 012111 1110 0 010112221
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
.++ .-.+.+.|+++|=|-...+.+.++..++.|.+- ||
T Consensus 61 ~~~---~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~l-VI 98 (266)
T COG0289 61 DDL---LLVKADADVLIDFTTPEATLENLEFALEHGKPL-VI 98 (266)
T ss_pred cch---hhcccCCCEEEECCCchhhHHHHHHHHHcCCCe-EE
Confidence 121 122347899999888888888888888888653 44
No 59
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.40 E-value=0.00067 Score=58.13 Aligned_cols=96 Identities=24% Similarity=0.302 Sum_probs=64.4
Q ss_pred CCccEEEEEccChHHH-HHHHHHHcCCC-ceEEEEecCCCchhhhhhhhh-cccccCcCCCcceEEeCCCeeEECCEEEE
Q 029791 1 MGKVKIGINGFGRIGR-LVARVILQRDD-VELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (188)
Q Consensus 1 m~~~kvgI~G~GriGr-~~~r~~~~~~~-~~ivaInd~~~~~~~~~~l~~-yDS~~g~~~~~~v~~~~~~~l~i~g~~i~ 77 (188)
|+++||||+|+|.++. .++..+.+.++ ++++++.|+ +++....+.+ |... + .+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~a~~~~~~--~------~~-------------- 56 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAFAEEFGIA--K------AY-------------- 56 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHHHHHcCCC--c------cc--------------
Confidence 6779999999997765 58888887776 799999998 4444322211 1110 0 00
Q ss_pred EEeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 78 v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+.+++ ..+.++|+|+=||+.....+.+...+++|.- |++--|
T Consensus 57 ----~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGkh-Vl~EKP 99 (342)
T COG0673 57 ----TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGKH-VLCEKP 99 (342)
T ss_pred ----CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCCE-EEEcCC
Confidence 111111 0112589999999999999999999999983 666555
No 60
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.30 E-value=0.00043 Score=60.41 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=29.1
Q ss_pred cEEEEEccChHHHHHHHHHHcC-------CCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~-------~~~~ivaInd~~ 37 (188)
+||+|+|||.+|+.+++.+.+. .++++|+|.|..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~ 41 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK 41 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence 3899999999999999988763 368999999863
No 61
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.30 E-value=0.00042 Score=60.99 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=28.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcC---------CCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~---------~~~~ivaInd~ 36 (188)
+++|+|.|||.+|+.+++.+.++ -++++++|.+.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 48999999999999999988643 15889999875
No 62
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.21 E-value=0.00069 Score=59.27 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=58.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcC--------C-CceEEEEecCCCch---h--hhhhhhhcccccCcCCCcceEEeCCCe
Q 029791 3 KVKIGINGFGRIGRLVARVILQR--------D-DVELVAVNDPFITT---D--YMTYMFKYDSVHGQWKHHELKVKDDKT 68 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~--------~-~~~ivaInd~~~~~---~--~~~~l~~yDS~~g~~~~~~v~~~~~~~ 68 (188)
++||+|.|||.+|+.+++.+.++ . ++++++|.|..... + .+..+++|-..+|+.. .
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------~ 71 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------N 71 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------h
Confidence 58999999999999999987652 1 48999999853110 0 0011111111010000 0
Q ss_pred eEECCEEEEEEeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 69 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 69 l~i~g~~i~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
+.-+ ... ...+++++ +.+..+|+|+|+|+.....+.....++.|.. |+++
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~--VVta 121 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKS--VVTS 121 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCc--EEEC
Confidence 0000 000 00012222 2335789999999987777777788888883 4544
No 63
>PRK10206 putative oxidoreductase; Provisional
Probab=97.18 E-value=0.0011 Score=57.88 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=60.4
Q ss_pred cEEEEEccChHHH-HHHHHHHc-CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 4 VKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~kvgI~G~GriGr-~~~r~~~~-~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+|+||+|+|++++ .+++++.. .+++++++|.|+. .+.....-+|.- + .++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~--~~~~~~~~~~~~---------~---------------~~~-- 53 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH--AKPEEQAPIYSH---------I---------------HFT-- 53 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC--hhHHHHHHhcCC---------C---------------ccc--
Confidence 7999999999875 56776654 4679999999984 222111111110 0 000
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+.+++ ..+.++|.|+-||+.....+.+...+++|. -|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcCC-cEEEecC
Confidence 112211 112378999999999999999999999995 4666655
No 64
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00072 Score=59.47 Aligned_cols=92 Identities=21% Similarity=0.357 Sum_probs=56.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCC----CeeEECCEEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD----KTLLFGEKPVTV 78 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~----~~l~i~g~~i~v 78 (188)
.+|||++|.|.+|+-++-.+...|++++|+|.|...+....+ ||..+++-. ..++..+- ..|. .| ++.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~-~~~e~~~~s~~a~Ai~-aG-Ki~v 89 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKI-EAVEADDASKMADAIE-AG-KIAV 89 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcc-cccccchhhHHHHHHh-cC-cEEE
Confidence 489999999999998888788889999999999876654443 455444421 11221000 0010 12 2222
Q ss_pred EeecCCCCCCcccCCccEEEeecCcc
Q 029791 79 FGVRNPEEIPWAETGAEYVVESTGVF 104 (188)
Q Consensus 79 ~~~~~p~~~~w~~~~vdiV~e~tg~~ 104 (188)
. .|. ++-.....+|+|+|+||.-
T Consensus 90 T--~D~-~~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 90 T--DDA-ELIIANDLIDVIIDATGVP 112 (438)
T ss_pred e--cch-hhhhcCCcceEEEEcCCCc
Confidence 1 122 2223345799999999964
No 65
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.09 E-value=0.0024 Score=52.54 Aligned_cols=133 Identities=25% Similarity=0.387 Sum_probs=81.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcC-CCceEEEEe--cCCCchhhhhhhhh--cccccCcCCCcceEEeCCCeeEECCEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVN--DPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~-~~~~ivaIn--d~~~~~~~~~~l~~--yDS~~g~~~~~~v~~~~~~~l~i~g~~i~ 77 (188)
+.||+|+|.|.||--+.-.++.. ..+|.-.+. || ..+-++...+ ..+|| +| +. .
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp--~sdglaraarlgv~tt~-----------eg----v~----~ 62 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDP--QSDGLARAARLGVATTH-----------EG----VI----G 62 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCC--CccHHHHHHhcCCcchh-----------hH----HH----H
Confidence 68999999999998665555443 234433332 33 3333433322 11111 11 00 0
Q ss_pred EEeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC-CCCCCCeEEeecCccC-CCC-CCceEEcCCh
Q 029791 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA-PSKDAPMFVVGVNENE-YKP-ELNIVSNASC 154 (188)
Q Consensus 78 v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~-ps~d~p~~V~gvN~~~-~~~-~~~iis~~sC 154 (188)
++ +.|+ ..++|+|||+|..+...+.++++.++|.+ .|+- |.+--|-+||-+|-+. .+. .-..| .|
T Consensus 63 ll--~~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~--~idltpaaigp~vvp~~n~~eh~~a~nvnmv---tc 130 (310)
T COG4569 63 LL--NMPE-----FADIDLVFDATSAGAHVKNAAALAEAGIR--LIDLTPAAIGPYVVPVVNLEEHVDALNVNMV---TC 130 (310)
T ss_pred HH--hCCC-----CCCcceEEeccccchhhcchHhHHhcCCc--eeecchhccCCeeccccchHHhcCCCCcceE---ee
Confidence 11 1232 13789999999999999999999999995 4554 4344789999999885 443 34566 46
Q ss_pred hhHhHHHHHHHHHh
Q 029791 155 TTNCLAPLAKVIHD 168 (188)
Q Consensus 155 tT~~lap~l~~l~~ 168 (188)
-..+-.|++....+
T Consensus 131 ggqatipiv~avsr 144 (310)
T COG4569 131 GGQATIPIVAAVSR 144 (310)
T ss_pred cCcccchhhhhhhh
Confidence 66666666665554
No 66
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0021 Score=56.28 Aligned_cols=36 Identities=33% Similarity=0.631 Sum_probs=30.8
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC---------CCceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQR---------DDVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~---------~~~~ivaInd~ 36 (188)
||++||+|.|||.+|+.++|.+.++ -++++++|.+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 7789999999999999999998753 14888888886
No 67
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.94 E-value=0.0028 Score=54.35 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=30.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.+||.|+| .||+|+.+.+++.. ++++||+..|+.
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~ 45 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTG 45 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccc
Confidence 47999999 69999999999998 899999988874
No 68
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.92 E-value=0.0015 Score=47.98 Aligned_cols=84 Identities=26% Similarity=0.384 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHcCC---CceEEEEecCC--CchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 10 GFGRIGRLVARVILQRD---DVELVAVNDPF--ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 10 G~GriGr~~~r~~~~~~---~~~ivaInd~~--~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
|||.||+.+++.+.+.. ++++++|.+.. .+.+..... . . . ... .+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~-~------~--~~~----------~~~ 51 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P-D------E--AFT----------TDL 51 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T-H------S--CEE----------SSH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c-c------c--ccc----------CCH
Confidence 89999999999998764 79999999974 111111000 0 0 0 001 111
Q ss_pred CC-CCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 85 EE-IPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 85 ~~-~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
++ +.| .++|+|+|||+.....+..+..+++|. -||++.
T Consensus 52 ~~~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~n 90 (117)
T PF03447_consen 52 EELIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTAN 90 (117)
T ss_dssp HHHHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES-
T ss_pred HHHhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEEC
Confidence 11 111 168999999998877788888899998 456543
No 69
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.80 E-value=0.0018 Score=57.73 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=65.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEe-cCCCchhhhhhhhh-cccccCcCCCcceEEeCCC---ee--EECCE
Q 029791 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVN-DPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TL--LFGEK 74 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~-~~~ivaIn-d~~~~~~~~~~l~~-yDS~~g~~~~~~v~~~~~~---~l--~i~g~ 74 (188)
.||+|.| +|-||+..++.+...| .++++++. +. +.+.+..+.+ |.. .-+-..+++ .| ...+.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~--n~~~l~~q~~~f~p-------~~v~i~~~~~~~~l~~~l~~~ 72 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK--NVELLAEQAREFRP-------KYVVVADEEAAKELKEALAAA 72 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC--CHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhccC
Confidence 5999999 9999999999887665 69999998 43 4544444332 221 111111110 00 01111
Q ss_pred EEEEEeecC-CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 75 PVTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 75 ~i~v~~~~~-p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
.++++...+ ..++ -...++|+|+.+.+.+...+..-..+++|. +|.+
T Consensus 73 ~~~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 73 GIEVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred CceEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 123333221 1111 111269999999999999988888999995 4555
No 70
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.75 E-value=0.027 Score=46.37 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=31.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~ 38 (188)
.+||+|.|||.+|+.+++.+.+. +..+|+|.|...
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g 57 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDG 57 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 47999999999999999999876 599999999753
No 71
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.75 E-value=0.035 Score=46.04 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=30.5
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 2 ~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+.+||+|.|||.+|+.+++.+.+. ++.+++|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 357999999999999999988776 6999999996
No 72
>PLN02700 homoserine dehydrogenase family protein
Probab=96.67 E-value=0.0037 Score=55.66 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=30.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC--------CceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~--------~~~ivaInd~ 36 (188)
|++++|+|+|+|.||+.+++.+..+. ++.+++|.|.
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 88899999999999999999875321 3788999885
No 73
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.55 E-value=0.0077 Score=49.12 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=60.3
Q ss_pred ccEEEEEccChHHHHHHHHHH-cCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~-~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
..||+|+|+|.+|+.+++.+. ...+++++++.|. +++.. +. .++|.++ ...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------------------~~--~i~g~~v--~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------------------GT--KIGGIPV--YHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------------------CC--EeCCeEE--cCH
Confidence 368999999999999888643 3457999999986 23221 00 0122222 111
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+..++ ..+.++|.|+.|++.....+.....+++|.+.++...|
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 222222 13347999999999877666677777899876544455
No 74
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.38 E-value=0.0076 Score=48.84 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=63.7
Q ss_pred ccEEEEEccChHHHHHHHHHHc-CCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~-~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+.++.|+|.|.+||.++.--+. +.+++++++-|. +++.+ |+.. +. + .|..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V----------G~~~-~~--------v-------~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV----------GTKI-GD--------V-------PVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh----------Cccc-CC--------e-------eeech
Confidence 3689999999999987764443 457999999997 44422 3322 11 2 22222
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+.+++ -.+.++|+++-|.+....-+-+..-.++|.|.++=-+|
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 223222 12348999999999888888888888999987444445
No 75
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.01 E-value=0.019 Score=57.06 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=63.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCce------------EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLL 70 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~------------ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~ 70 (188)
+.||+|+|.|+||+.+++.+.+.++++ +|+|.|+. ++....+.+- ++ + + ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~--~~~a~~la~~------~~-~-~-----~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY--LKDAKETVEG------IE-N-A-----EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC--HHHHHHHHHh------cC-C-C-----ceEE
Confidence 359999999999999999998877766 79999983 4433222210 00 0 0 0011
Q ss_pred ECCEEEEEEeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 71 FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 71 i~g~~i~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
++ + .|++++.=.-.++|+|+-|++.+...+-+...+++|+. +++..
T Consensus 634 lD-----v---~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkH--vv~ek 679 (1042)
T PLN02819 634 LD-----V---SDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKH--LVTAS 679 (1042)
T ss_pred ee-----c---CCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCC--EEECc
Confidence 10 1 22222211002689999999999999999999999984 45443
No 76
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.99 E-value=0.013 Score=41.90 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=59.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE-ee
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF-GV 81 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~-~~ 81 (188)
+-|+.|.|.|+.|+.++...+...+++++++-|. +++.. | -.++|- .++ ..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~----------------------G--~~i~gi--pV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI----------------------G--KEIGGI--PVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT----------------------T--SEETTE--EEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc----------------------C--cEECCE--EeeccH
Confidence 4689999999999988766665567999999886 23211 1 113332 333 11
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+..+. .++|+.+-|.+.....+.+...+++|.|.++.-+|
T Consensus 55 ~~l~~~----~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEF----IEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHH----CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhh----hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111 13899999999888888888899999998766544
No 77
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.97 E-value=0.031 Score=50.85 Aligned_cols=100 Identities=14% Similarity=0.247 Sum_probs=60.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCC--------chhhhhhhhhccccc-CcCCCcceEEeCCCeeEECC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE 73 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~--------~~~~~~~l~~yDS~~-g~~~~~~v~~~~~~~l~i~g 73 (188)
..||+|-|||.+|+.+++.+.+. +..||+|.|... +++. |++|-..+ |... .+.+. .+.
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~----~~~~~----~~~ 299 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRIS----EYAEE----FGA 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchh----hhhhh----cCC
Confidence 37999999999999999998876 599999999421 3332 33332111 1111 01000 000
Q ss_pred EEEEEEeecCCCCCCcccCCccEEEeec-CcccCHHhHHHHHhCCCcEEEE
Q 029791 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~h~~~Gakkvii 123 (188)
+. .+++.+ |. .++|+.+.|+ +.-++.+.+..+.+.+|| +|+
T Consensus 300 ~~------i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 300 EY------LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred ee------cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 11 122332 53 5799999997 555667788888777785 455
No 78
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.82 E-value=0.028 Score=48.02 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=27.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEE-ecC
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAV-NDP 36 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaI-nd~ 36 (188)
+||.||| .|++||.+.+++.. ++++||+. -|+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~ 34 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGG 34 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccc
Confidence 4899999 69999999999888 78999987 443
No 79
>PLN02477 glutamate dehydrogenase
Probab=95.74 E-value=0.16 Score=45.76 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=29.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.+|+|-|||.+|+.+++.+.+. +..+|+|.|..
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~ 239 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT 239 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 6899999999999999988776 59999999974
No 80
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.71 E-value=0.069 Score=43.27 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=27.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.++|+|.|||++|+.+++.+.+. +.+++ +.|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~-G~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE-GAKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcC
Confidence 36899999999999999999876 47888 6665
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.034 Score=45.90 Aligned_cols=99 Identities=28% Similarity=0.320 Sum_probs=57.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhh--cccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~--yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+++.|+|.|++|+.+++.|.+.+ .+++.|.+ +.+.....++ +|. ..+..++....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~---------------~~v~gd~t~~~~L-- 59 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT---------------HVVIGDATDEDVL-- 59 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce---------------EEEEecCCCHHHH--
Confidence 48999999999999999998774 77777765 3333322111 111 0111122111121
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHH-hHHHHHh-CCCcEEEEeCCCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKD-KAAAHLK-GGAKKVIISAPSK 128 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~-~~~~h~~-~Gakkviis~ps~ 128 (188)
.+.. -.++|+++=+||...... .+..+++ -|.+++|..+.++
T Consensus 60 ---~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 60 ---EEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred ---HhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 1221 126799999999854432 3334444 6899888776653
No 82
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.41 E-value=0.028 Score=44.50 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|||+|+|+||+.+++.+... ++++++.+-.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecC-CceeEEeccc
Confidence 6899999999999999998866 4887777643
No 83
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.28 E-value=0.18 Score=42.71 Aligned_cols=105 Identities=15% Similarity=0.256 Sum_probs=61.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCC--------chhhhhhhhhcccccCc-CCCcceEEeCCCeeEECCE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGEK 74 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~--------~~~~~~~l~~yDS~~g~-~~~~~v~~~~~~~l~i~g~ 74 (188)
.||+|-|||.+|+.+++.+.+. +..+|+|+|... +++.+..+++++..++. .. .+.. .+.+
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~----~~~~----~~~~- 108 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS----EYAK----KYGT- 108 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH----HHhh----cCCC-
Confidence 6999999999999999998876 599999998432 34555455555432221 00 0000 0111
Q ss_pred EEEEEeecCCCCCCcccCCccEEEeec-CcccCHHhHHHHHhCCCcEEEEeC
Q 029791 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 75 ~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~h~~~Gakkviis~ 125 (188)
.+. -+++++ |. .++||.+=|+ +.-++.+.++.-.+.+|| +|+-+
T Consensus 109 -a~~---~~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~Eg 153 (254)
T cd05313 109 -AKY---FEGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVAEG 153 (254)
T ss_pred -CEE---eCCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEEeC
Confidence 011 123332 43 4688877654 556677777765556674 45533
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.22 Score=42.51 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=75.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhc-----c--cccCcCCCcceEEeCCCeeEECCEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-----D--SVHGQWKHHELKVKDDKTLLFGEKPV 76 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~y-----D--S~~g~~~~~~v~~~~~~~l~i~g~~i 76 (188)
.||||+|.|.+|+.++..+... +.+++.. |. +++.+....+. | -..|... .. .. . .. .. .+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~-~~-~~--~-~~-~~--~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVF-ET--TEELATAGRNRIEKSLERAVSRGKLT-ER-ER--D-AA-LA--RL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEE-EC--CHHHHHHHHHHHHHHHHHHHhcccCC-hh-hH--H-HH-Hh--Ce
Confidence 4899999999999999887765 5775544 44 33333221110 0 0012211 00 00 0 00 11 22
Q ss_pred EEEeecCCCCCCcccCCccEEEeecCcccCHHhH-----HHHH-hCCCcEEEEeCCCC----------CCCeEE---eec
Q 029791 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-----AAHL-KGGAKKVIISAPSK----------DAPMFV---VGV 137 (188)
Q Consensus 77 ~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~-----~~h~-~~Gakkviis~ps~----------d~p~~V---~gv 137 (188)
++ ..+++.+ .++|+|+||.......+.. +.+. ..++ ++.|+.|. ..|--+ --.
T Consensus 74 ~~--~~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 74 RF--TTDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred Ee--eCCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 22 2334333 3899999998866554332 2333 3445 77777652 122111 122
Q ss_pred CccCCCCCCceEEcCChhhHhHHHHHHHHHhhcC
Q 029791 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFG 171 (188)
Q Consensus 138 N~~~~~~~~~iis~~sCtT~~lap~l~~l~~~~g 171 (188)
|+-.+-+--.|+..+.++...++.+...+.+..|
T Consensus 146 ~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 146 NPVPVLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 3221112235777777777777776666665555
No 85
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.18 E-value=0.055 Score=45.46 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=56.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC----------CceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEEC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD----------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~----------~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~ 72 (188)
..||.|+|.|-+|..+++.+...+ +++++-+..-..+...+-.-+-+++.-|+.+ .++-.+ .--.++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~--ri~~~~ 87 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVLVN--RLNQAM 87 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHHHH--HHHhcc
Confidence 479999999999999999987532 2355444322222222222122344456654 433221 000122
Q ss_pred CEEEEEEeec-CCCCCCcccCCccEEEeecCcccCHHhHHHHH
Q 029791 73 EKPVTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (188)
Q Consensus 73 g~~i~v~~~~-~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~ 114 (188)
+-.+....+. +++++ + .+.|+|++|+..+.++......+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 3333332221 12222 2 36899999999988876554333
No 86
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.17 E-value=0.091 Score=47.04 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=60.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+||-|+|.|.||+.+++.+..+.+.+|... |. +.+..+... +++.++ ++ .+.++- .|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iA-dR--s~~~~~~i~--~~~~~~-----v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIA-DR--SKEKCARIA--ELIGGK-----VE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEE-eC--CHHHHHHHH--hhcccc-----ce-----eEEecc--------cC
Confidence 599999999999999999887766665544 43 344443332 221111 11 122221 11
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+.+.=--.+.|+||.|.+.|.+..-++..++.|.. +++.+
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~--yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVD--YVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCC--EEEcc
Confidence 111100002459999999999999988899999995 45544
No 87
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.10 E-value=0.16 Score=46.31 Aligned_cols=103 Identities=16% Similarity=0.341 Sum_probs=63.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC--------Cchhhhhhhhhccccc-CcCCCcceEEeCCCeeEECCE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEK 74 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~--------~~~~~~~~l~~yDS~~-g~~~~~~v~~~~~~~l~i~g~ 74 (188)
.+|+|-|||.+|+..++.+.+. +..+|+|+|.. .+.+.+.+++++-..+ |+.. .+.+. .-|
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~----~~~~~----~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK----EYAKH----SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH----hhhhc----cCC-
Confidence 6999999999999999998876 59999999985 2355555555543221 2111 00000 001
Q ss_pred EEEEEeecCCCCCCcccCCccEEEeec-CcccCHHhHHHHHhCCCcEEEE
Q 029791 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 75 ~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~h~~~Gakkvii 123 (188)
.+.. ++++ +|. .++|+.+=|+ +..++.+.+..-++.||| +|+
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 0111 1222 375 5789888664 666777888876688896 455
No 88
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.09 E-value=0.12 Score=45.53 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=56.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhhhh-hcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMF-KYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~l~-~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
++||||+|. ++|+.+++++.+.+ +++++||.|. +.+....+. +|.-. .|
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A~~~gi~--~y------------------------ 53 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALAHRLGVP--LY------------------------ 53 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHHHHhCCC--cc------------------------
Confidence 579999999 68999999998877 8999999998 444322221 12110 00
Q ss_pred ecCCCCCCcccCCccEEEe--ecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 81 VRNPEEIPWAETGAEYVVE--STGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e--~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+.+++. .+.++|.|.= +++.....+.+...+++|. -|++--|
T Consensus 54 -~~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKP 98 (343)
T TIGR01761 54 -CEVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHP 98 (343)
T ss_pred -CCHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCC
Confidence 1122221 1124454444 2345666788888999986 4666555
No 89
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.91 E-value=0.086 Score=36.84 Aligned_cols=89 Identities=25% Similarity=0.294 Sum_probs=51.6
Q ss_pred EEEEEccChHHHHHHHHHHcCC--CceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~--~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
||||+|+|++|..+++.+.+.+ ..++.-+++. +++...++.+. ++ +. ++...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~---~~------~~---------------~~~~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKE---YG------VQ---------------ATADD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHH---CT------TE---------------EESEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHh---hc------cc---------------cccCC
Confidence 7999999999999999998763 3676666565 55655554321 00 00 00000
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHH--HhCCCcEEEEeC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAH--LKGGAKKVIISA 125 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h--~~~Gakkviis~ 125 (188)
..+-+ ...|+||-|.....-.+-++.. ...+. .+||.
T Consensus 55 ~~~~~----~~advvilav~p~~~~~v~~~i~~~~~~~--~vis~ 93 (96)
T PF03807_consen 55 NEEAA----QEADVVILAVKPQQLPEVLSEIPHLLKGK--LVISI 93 (96)
T ss_dssp HHHHH----HHTSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEEE
T ss_pred hHHhh----ccCCEEEEEECHHHHHHHHHHHhhccCCC--EEEEe
Confidence 00111 1469999999987777666544 33443 67763
No 90
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.89 E-value=0.11 Score=45.63 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=32.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC--CceEEEEecCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPF 37 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~--~~~ivaInd~~ 37 (188)
.+|+||.|.|+|++.+++++...| +.+||||.|+.
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s 42 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPS 42 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEeccc
Confidence 489999999999999999998777 79999999983
No 91
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.87 E-value=0.062 Score=47.32 Aligned_cols=97 Identities=23% Similarity=0.355 Sum_probs=55.8
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCCC
Q 029791 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (188)
Q Consensus 6 vgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p~ 85 (188)
|.|+|.|.+|+.+++.|.+++.++-+.+.|. +.+.+..+.+.- . . ..++. ..+ ...|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~~--~---~-~~~~~-----~~~--------d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEKL--L---G-DRVEA-----VQV--------DVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT----T---T-TTEEE-----EE----------TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhhc--c---c-cceeE-----EEE--------ecCCHH
Confidence 6899999999999999998877745666665 455543433210 0 0 11111 111 112222
Q ss_pred CCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 86 ~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
.+.=--.+.|+|+.|+|.|....-++..++.|+ -.++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 211111367999999999988888889999999 45763
No 92
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.85 E-value=0.17 Score=44.34 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=68.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECC-EEEEEEeecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGVRN 83 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g-~~i~v~~~~~ 83 (188)
+|.|.|.|.||-+.+..+...+-.+++++ |. +.+.+...-++.. ....++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g---------------~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG---------------ADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC---------------CeEeecCccccHH---HH
Confidence 69999999999887666665554566665 65 4555544333211 0111211 11000 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CCCCCCceEEcCC-hhhHhHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNAS-CTTNCLAP 161 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~-~~~~~~~iis~~s-CtT~~lap 161 (188)
...+.. ..++|+||||+|...+.+.+-..++.|-.-+++.-+..+.. ..+.. .+..+..+..+-. -.......
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~----~~~~~~~~~kel~l~gs~~~~~~~~~~~ 304 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDI----PLPAGLVVSKELTLRGSLRPSGREDFER 304 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccC----ccCHHHHHhcccEEEeccCCCCcccHHH
Confidence 001111 13799999999966555666666665554444444433221 11111 1222334444422 22345555
Q ss_pred HHHHHHh
Q 029791 162 LAKVIHD 168 (188)
Q Consensus 162 ~l~~l~~ 168 (188)
+++.|.+
T Consensus 305 ~~~ll~~ 311 (350)
T COG1063 305 ALDLLAS 311 (350)
T ss_pred HHHHHHc
Confidence 6666654
No 93
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.82 E-value=0.053 Score=42.17 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+|||++|+|++|+.+++.+... ++++.. .|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-g~~v~~-~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-GYEVTV-YDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-TTEEEE-EES
T ss_pred CEEEEEchHHHHHHHHHHHHhc-CCeEEe-ecc
Confidence 5999999999999999999876 477665 455
No 94
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.80 E-value=0.026 Score=54.97 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=28.7
Q ss_pred CccEEEEEccChHHHHHHHHHHcCC---------CceEEEEecC
Q 029791 2 GKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (188)
Q Consensus 2 ~~~kvgI~G~GriGr~~~r~~~~~~---------~~~ivaInd~ 36 (188)
++++|+|.|||.+|+.+++.+.++. ++++++|.|.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 4689999999999999999886421 4888999875
No 95
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.77 E-value=0.06 Score=52.49 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=28.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC--------CceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~--------~~~ivaInd~ 36 (188)
.++|+|.|||.+|+.+++.+.++. ++++++|.+.
T Consensus 465 ~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 465 VLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred cccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 589999999999999999886432 4788999864
No 96
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.66 E-value=0.11 Score=45.03 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=24.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||+|+|.|.+|..++..+...+-.+ +.+-|.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 479999999999999888776554235 555565
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.58 E-value=0.43 Score=41.09 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|| +||+|+|.|.+|..++..+...+ .++..++
T Consensus 1 ~~-mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~ 32 (341)
T PRK08229 1 MM-ARICVLGAGSIGCYLGGRLAAAG-ADVTLIG 32 (341)
T ss_pred CC-ceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence 55 79999999999999999887763 5666554
No 98
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.33 E-value=0.11 Score=42.69 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.3
Q ss_pred CC-ccEEEEEccChHHHHHHHHHHcCC--Cce-EEEEecC
Q 029791 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVE-LVAVNDP 36 (188)
Q Consensus 1 m~-~~kvgI~G~GriGr~~~r~~~~~~--~~~-ivaInd~ 36 (188)
|| .+||+|+|.|++|+.+++.+...+ .++ ++..++.
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 54 689999999999999999887653 354 5555553
No 99
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=94.33 E-value=0.23 Score=45.29 Aligned_cols=112 Identities=14% Similarity=0.213 Sum_probs=64.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhhhhh-cccccCcCCCcceEEeCCC---eeE--ECCE-
Q 029791 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TLL--FGEK- 74 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~l~~-yDS~~g~~~~~~v~~~~~~---~l~--i~g~- 74 (188)
.||+|.| +|-||...++.+.+.| .|+++++.--. +.+.++...+ |.. ..+...+.. .|. ..|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~-Ni~lL~~q~~~f~p-------~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGS-NVTLLADQVRKFKP-------KLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCC-CHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhcCCC
Confidence 6999999 5999999999888665 59999997643 5555544322 221 111111110 000 0110
Q ss_pred -EEEEEee-cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 75 -PVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 75 -~i~v~~~-~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
.++++.. .+..++ -...++|+|+.+.+.+....-.-..+++| |+|.+.+
T Consensus 130 ~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 130 DKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 1233321 111111 01126899999999998888777888999 4555543
No 100
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.27 E-value=0.27 Score=41.33 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCC-ceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~-~~ivaInd~ 36 (188)
||+|+|+|.+|..+++.+...+. .++++. |.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~-d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGY-DH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEE-cC
Confidence 89999999999999999886642 355544 54
No 101
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.93 E-value=0.19 Score=43.67 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=25.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
+.||+|+|.|.+|..++..+...+-.+ +.+.|..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIV 39 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCC
Confidence 358999999999999888776554236 6677764
No 102
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.81 E-value=0.1 Score=39.51 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=23.9
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||.|+|.|.+|..+++.|...+ +.-+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 6899999999999999998764 544445444
No 103
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.74 E-value=0.092 Score=45.41 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=25.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|||+|||.+++.+... ++++.+.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEEEC
Confidence 5899999999999999988655 58877764
No 104
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.71 E-value=0.19 Score=40.73 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=54.6
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 6 IGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 6 vgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
|.|.| .|.+|+.++++|.. +++++.++.-.. .+..+.-|+.. |-.+ +.+ ...|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~--~~~~~~~l~~~---------------g~~v-v~~------d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP--SSDRAQQLQAL---------------GAEV-VEA------DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS--HHHHHHHHHHT---------------TTEE-EES-------TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc--chhhhhhhhcc---------------cceE-eec------ccCCH
Confidence 68999 79999999999998 569999987642 22222222210 1101 000 01123
Q ss_pred CCCCcccCCccEEEeecCcccCH------HhHHHHHhCCCcEEEEeC
Q 029791 85 EEIPWAETGAEYVVESTGVFTDK------DKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~------~~~~~h~~~Gakkviis~ 125 (188)
+.+.=.-.|+|.||.+++..... ....+..++|+|++|.|.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 33221223899999999965221 234455678999987754
No 105
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.71 E-value=0.46 Score=43.32 Aligned_cols=104 Identities=16% Similarity=0.278 Sum_probs=63.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCC--------chhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI--------TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 75 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~--------~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~ 75 (188)
.+|+|-|||.+|+..++.+.+. +..+|+|+|... +.+.+.+|++|-..+|... .. ..+ .+.|-
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga- 299 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS- 299 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC-
Confidence 6999999999999999988776 699999866532 3445666776644332110 00 000 11121
Q ss_pred EEEEeecCCCCCCcccCCccEEEee-cCcccCHHhHHHHHhCCCcEEEE
Q 029791 76 VTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 76 i~v~~~~~p~~~~w~~~~vdiV~e~-tg~~~~~~~~~~h~~~Gakkvii 123 (188)
+.. +++++ |. .++|+.+=| ++.-++.+.++.-.+.+|| .|+
T Consensus 300 -~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 300 -TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred -EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 111 12222 54 578887755 4667777888776677785 445
No 106
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.57 E-value=0.39 Score=40.93 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=26.1
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
||.|.| .|.+|+.+++.+.+. +.+++++.-
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE-GYQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCeEEEEEc
Confidence 899999 799999999999876 478888864
No 107
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.56 E-value=0.11 Score=45.02 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+|||+|+|+|||.+++.+... ++++++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEECC
Confidence 5899999999999999988755 588887653
No 108
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.40 E-value=0.18 Score=41.99 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC-CceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~-~~~ivaInd~ 36 (188)
|| +||+|+|+|.+|..+++.+.+.+ ....+.+.+.
T Consensus 1 ~m-m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 1 MM-KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CC-CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 54 79999999999999999887653 1233445555
No 109
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.34 E-value=0.12 Score=45.15 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|||+||+.+++.+... ++++.+.+
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEC
Confidence 5899999999999999988766 48877764
No 110
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.26 E-value=0.12 Score=44.70 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|+|+|||.+++.+... ++++++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 5899999999999999988655 58877764
No 111
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.19 E-value=2.3 Score=36.59 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=70.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|.|.|.+|...++.+.... .+++++.-...+.+.+..+.++ | .+ . ++-..-.+ . +
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~~----G----a~--------~-v~~~~~~~-~--~ 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEEL----G----AT--------Y-VNSSKTPV-A--E 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHc----C----CE--------E-ecCCccch-h--h
Confidence 47999999999999888776654 6777775311123333222111 1 00 0 11000000 0 0
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCe-EE-eecCccCCCCCCceEEcCChhhHhHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM-FV-VGVNENEYKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~-~V-~gvN~~~~~~~~~iis~~sCtT~~lap 161 (188)
.. .+ .++|+||||+|.....+.+-..++.|-+-+++..++.+.+. +- ..++...+..+..+..+-.++..-+..
T Consensus 233 -~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 308 (355)
T cd08230 233 -VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ 308 (355)
T ss_pred -hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH
Confidence 00 12 37899999999654455556677766543334333321111 11 011122232345566655565555666
Q ss_pred HHHHHHh
Q 029791 162 LAKVIHD 168 (188)
Q Consensus 162 ~l~~l~~ 168 (188)
+++.|.+
T Consensus 309 ~~~~l~~ 315 (355)
T cd08230 309 AVEDLAQ 315 (355)
T ss_pred HHHHHHh
Confidence 7777765
No 112
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.10 E-value=0.55 Score=34.68 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=53.1
Q ss_pred EEEEEc----cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 5 KIGING----FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 5 kvgI~G----~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
+|+|+| -++.|+.+++.+.+. ++++..||-. ++. +.|.+ .+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~------------~~~-------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPK------------GGE-------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTT------------CSE-------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCC------------ceE-------------------ECcEE--ee-
Confidence 799999 589999999999884 5899988743 111 11211 11
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
.+.++.| ..+|+++-+++.....+..+...+.|++.+++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1122111 36899999999888888888888889999888654
No 113
>PRK07574 formate dehydrogenase; Provisional
Probab=92.86 E-value=0.15 Score=45.57 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
++|||+|+|+||+.+++.+... ++++.+.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999988765 47877664
No 114
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.85 E-value=0.089 Score=39.85 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=27.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+||+|+|.||+|..+.+++.+. +.+++++...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHT-TSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 47999999999999999999876 4899999775
No 115
>PLN02928 oxidoreductase family protein
Probab=92.84 E-value=0.15 Score=44.78 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++||+|+|+||+.+++.+... ++++++.+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~d 189 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLATR 189 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEEC
Confidence 5899999999999999988765 48887764
No 116
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=92.82 E-value=0.66 Score=39.70 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=21.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
+++|+|+|+|.||+.++|.+.+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC
Confidence 579999999999999999998764
No 117
>PLN02256 arogenate dehydrogenase
Probab=92.79 E-value=0.21 Score=43.14 Aligned_cols=34 Identities=32% Similarity=0.676 Sum_probs=27.5
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 2 ~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+++||+|+|+|.||..+++.+.+. +.++++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~-G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ-GHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECc
Confidence 457999999999999999988765 4787776543
No 118
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.75 E-value=2 Score=36.46 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
++.|+|.|.+|...++.+... +...+.+.|. +.+.+....++ ..+|- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~--~~~rl~~a~~~-------------------~~i~~--------~~~ 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWET--NPRRRDGATGY-------------------EVLDP--------EKD 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCceEEEeCC--CHHHHHhhhhc-------------------cccCh--------hhc
Confidence 689999999999988877665 4665555554 23332111000 01110 000
Q ss_pred CCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CCCCCCceEEcCChhhHhHHHHH
Q 029791 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLA 163 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~-~~~~~~~iis~~sCtT~~lap~l 163 (188)
...++|+||||+|.-.+.+.+-..++.|.+-+++..+.. ++ .+|.. .+.....++.....+..-+..++
T Consensus 197 -----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 266 (308)
T TIGR01202 197 -----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE--PV---NFDFVPAFMKEARLRIAAEWQPGDLHAVR 266 (308)
T ss_pred -----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC--Cc---ccccchhhhcceEEEEecccchhHHHHHH
Confidence 123789999999976555555566666664333332221 21 12221 22223455655555555577777
Q ss_pred HHHHh
Q 029791 164 KVIHD 168 (188)
Q Consensus 164 ~~l~~ 168 (188)
+.+.+
T Consensus 267 ~l~~~ 271 (308)
T TIGR01202 267 ELIES 271 (308)
T ss_pred HHHHc
Confidence 77764
No 119
>PRK06436 glycerate dehydrogenase; Provisional
Probab=92.64 E-value=0.18 Score=43.63 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+|||+|+|+||+.+++.+... ++++++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEECC
Confidence 6899999999999999977644 588887763
No 120
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.60 E-value=0.17 Score=44.13 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=25.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.+|||+|+|+||+.+++.+... ++++.+. |+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~~ 182 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRILYY-SRT 182 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEE-CCC
Confidence 5899999999999999998765 4787655 553
No 121
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.54 E-value=0.2 Score=42.47 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=26.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|+ +||||+|+|.+|+.+++.+... +.++++ .|+
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~-g~~v~~-~d~ 33 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKA-GYSLVV-YDR 33 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHC-CCeEEE-EcC
Confidence 54 6999999999999999988765 477664 455
No 122
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.45 E-value=0.19 Score=45.25 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|+|+||+.+++.+... ++++++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999988765 47877664
No 123
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.31 E-value=0.77 Score=41.87 Aligned_cols=103 Identities=15% Similarity=0.319 Sum_probs=60.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC--------Cchhhhhhhhhcccc-cCcCCCcceEEeCCCeeEECCE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSV-HGQWKHHELKVKDDKTLLFGEK 74 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~--------~~~~~~~~l~~yDS~-~g~~~~~~v~~~~~~~l~i~g~ 74 (188)
.||+|-|||.+|...++.|.+. +..+++|+|.. .+++.+.|+.++... +++.. .+.+. . |
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~----~~~~~----~-g- 297 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR----EYAEK----Y-G- 297 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchh----hhHhh----c-C-
Confidence 6999999999999999999876 69999999932 144445444333221 11111 00000 0 1
Q ss_pred EEEEEeecCCCCCCcccCCccEEEeec-CcccCHHhHHHHHhCCCcEEEEe
Q 029791 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIIS 124 (188)
Q Consensus 75 ~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~h~~~Gakkviis 124 (188)
.... ++++ +|. ..+|+.+=|+ +.-++.+.++.-...|++ +|+.
T Consensus 298 -a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 298 -CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred -CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 1111 1222 254 4789888665 455777888766666783 3443
No 124
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.29 E-value=0.37 Score=41.15 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=23.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+||+|+|.|.+|..++..+...+-.+++-+ |.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~-D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF-DI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE-EC
Confidence 699999999999999887776542254444 54
No 125
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.27 E-value=0.22 Score=43.67 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|||+|+|+||+.+++++... ++++++.+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 6899999999999999999876 4888877665
No 126
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.24 E-value=0.21 Score=43.51 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.1
Q ss_pred cEEEEEccChHHHHHHHHHH-cCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~-~~~~~~ivaInd~~ 37 (188)
.++||+|+|+|||.+++.+. .. ++++++ .|+.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~-~~~~ 178 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILY-NARR 178 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEE-ECCC
Confidence 68999999999999999876 44 577664 5553
No 127
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.22 E-value=0.23 Score=43.33 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
++|||+|+|+||+.+++.+... ++++++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEe
Confidence 5899999999999999988765 47877664
No 128
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.10 E-value=0.21 Score=43.64 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=24.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++||+|+||||+.++|.+..- ++++..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 6899999999999999988743 47765554
No 129
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.07 E-value=0.55 Score=39.03 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=24.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..||.|+|.|-+|..++++|...+ +.=+.+.|
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD 42 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG-VGKLTLID 42 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 468999999999999999998654 43344444
No 130
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.95 E-value=1.4 Score=38.27 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|.|.+|..++..+...+-+.-+.+.|.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 799999999999999988877764433444454
No 131
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.89 E-value=0.4 Score=36.59 Aligned_cols=80 Identities=24% Similarity=0.257 Sum_probs=45.3
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
+||+|+|. |.+|..++..+...+-..=+.+.|.. .+ .+.=...|-.|..+. .+..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~--~~-~~~g~a~Dl~~~~~~--------------~~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN--ED-KAEGEALDLSHASAP--------------LPSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS--HH-HHHHHHHHHHHHHHG--------------STEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC--cc-cceeeehhhhhhhhh--------------ccccccccc-c
Confidence 49999998 99999999888766543334444542 11 111111222222111 111233333 4
Q ss_pred CCCCCCcccCCccEEEeecCccc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFT 105 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~ 105 (188)
+.+.+. +.|+|+-+.|.-.
T Consensus 63 ~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SGGGGT----TESEEEETTSTSS
T ss_pred cccccc----cccEEEEeccccc
Confidence 555553 8999999998753
No 132
>PLN02306 hydroxypyruvate reductase
Probab=91.83 E-value=0.25 Score=44.16 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=25.1
Q ss_pred cEEEEEccChHHHHHHHHHH-cCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~-~~~~~~ivaInd~~ 37 (188)
.+|||+|+|+||+.+++.+. .. ++++.+. |+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~-d~~ 198 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DLY 198 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE-CCC
Confidence 58999999999999999875 33 5787655 553
No 133
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.73 E-value=0.29 Score=42.46 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|+|.||+.+++.+... ++++.+.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999988865 48877765
No 134
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.53 E-value=0.27 Score=43.84 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|||+|+|.||+.+++.+... ++++.+. ||
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~-G~~V~~~-dp 147 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL-GIKTLLC-DP 147 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999988765 5887765 44
No 135
>PLN03139 formate dehydrogenase; Provisional
Probab=91.42 E-value=0.27 Score=44.03 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|||+|+|+||+.+++.+... ++++.+ .|+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~-~d~ 230 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLY-HDR 230 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEE-ECC
Confidence 5899999999999999998764 588766 454
No 136
>PRK08605 D-lactate dehydrogenase; Validated
Probab=91.34 E-value=0.31 Score=42.46 Aligned_cols=32 Identities=38% Similarity=0.641 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
++|||+|+|+||+.+++.+...-++++.+. |+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~-d~ 178 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY-DP 178 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE-CC
Confidence 589999999999999998843235777664 54
No 137
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.18 E-value=0.34 Score=43.50 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|.++||+|+|+|.+|..++.++.+.+ .++++++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 76789999999999999999988764 7877774
No 138
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.16 E-value=0.53 Score=42.50 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|+|.|+|.||+.+++.+...+ .+++. .|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 58999999999999999887664 66555 555
No 139
>PRK08618 ornithine cyclodeaminase; Validated
Probab=91.13 E-value=0.62 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=28.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.+++|+|.|.+|+.+++++....+++-+.|.+..
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~ 161 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT 161 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence 5799999999999999888755568888898873
No 140
>PLN00016 RNA-binding protein; Provisional
Probab=90.88 E-value=0.75 Score=40.28 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.3
Q ss_pred ccEEEEE----c-cChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGIN----G-FGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~----G-~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
++||.|. | .|.||+.+++.|.+.+ .+++++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 3689999 8 8999999999998764 788887653
No 141
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.78 E-value=0.25 Score=42.78 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||+|+|.|.+|..++..+...+-..-+.+.|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4699999999999999888876654333444454
No 142
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.63 E-value=0.44 Score=40.20 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
|..+||+++|+|.+|+.+++.+.+.+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCC
Confidence 66679999999999999999998764
No 143
>PLN02602 lactate dehydrogenase
Probab=90.59 E-value=0.55 Score=41.46 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=73.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.||+|+|.|.+|..++..+...+-..-+.+-|...+ .+.=...|-.|.. .+.+. ..+....+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~---~~~g~a~DL~~~~--------------~~~~~-~~i~~~~d 99 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD---KLRGEMLDLQHAA--------------AFLPR-TKILASTD 99 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc---hhhHHHHHHHhhh--------------hcCCC-CEEEeCCC
Confidence 599999999999999988876653333444454211 1111111222211 11111 12322223
Q ss_pred CCCCCcccCCccEEEeecCccc----CHH------------hHHHHHhCC--CcEEEEeCCCCCCCe-EEeecCccCCCC
Q 029791 84 PEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGG--AKKVIISAPSKDAPM-FVVGVNENEYKP 144 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~----~~~------------~~~~h~~~G--akkviis~ps~d~p~-~V~gvN~~~~~~ 144 (188)
.+.+ .++|+|+-+.|.-. ++. .++.-.+.+ +.-+++|+|. |.-+ ++... ..+ +
T Consensus 100 y~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv-dv~t~~~~k~--sg~-p 171 (350)
T PLN02602 100 YAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV-DVLTYVAWKL--SGF-P 171 (350)
T ss_pred HHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch-HHHHHHHHHH--hCC-C
Confidence 4433 38999999988742 331 112122222 2234557763 2111 11111 112 2
Q ss_pred CCceEEcCChhhHhHHHHHHHHHhhcCceEEEEE
Q 029791 145 ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178 (188)
Q Consensus 145 ~~~iis~~sCtT~~lap~l~~l~~~~gI~~~~~t 178 (188)
..++|. .||.-=-+++-..|.+.+|+..-.+.
T Consensus 172 ~~rviG--~gt~LDs~R~r~~lA~~l~v~~~~V~ 203 (350)
T PLN02602 172 ANRVIG--SGTNLDSSRFRFLIADHLDVNAQDVQ 203 (350)
T ss_pred HHHEEe--ecchHHHHHHHHHHHHHhCCCcccee
Confidence 345663 35555567788888888887654443
No 144
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.52 E-value=0.81 Score=37.21 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaI 33 (188)
|||+|+| .|.+|..+++.+.+.. .+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 3899997 9999999999988764 565544
No 145
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.42 E-value=0.62 Score=38.75 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=24.9
Q ss_pred EEEEEccChHHHHHHHHHHcCC-CceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~-~~~ivaInd~ 36 (188)
||||+|+|++|+.+++.+...+ ..+.+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 8999999999999999998653 2333556665
No 146
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=90.29 E-value=0.36 Score=41.19 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=29.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC--------CceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~--------~~~ivaInd~ 36 (188)
|++++|+++|+|-+||.+++.+.... .+.+|+++|.
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 67899999999999999998876332 3789999986
No 147
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.18 E-value=0.46 Score=40.09 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=24.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
||+|+|+|.||..+++.+... +.++.+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d 30 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVS 30 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999998776 46766554
No 148
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.14 E-value=0.72 Score=39.40 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=24.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCC-ceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~-~~ivaInd~ 36 (188)
..||+|+|+|.+|+.+++.+...+. .+++ +.|+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 3689999999999999998876542 2444 5555
No 149
>PLN02712 arogenate dehydrogenase
Probab=90.14 E-value=0.5 Score=45.20 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=26.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
++||||+|+|+||+.+++.+... +.+|++.+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~-G~~V~~~dr 400 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQ-GHTVLAYSR 400 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHC-cCEEEEEEC
Confidence 47999999999999999998865 478776654
No 150
>PLN02688 pyrroline-5-carboxylate reductase
Probab=90.07 E-value=0.76 Score=38.18 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=25.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC---ceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~---~~ivaInd~ 36 (188)
+|||++|+|.+|..+++.+.+.+. .+++..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999987542 266666465
No 151
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.88 E-value=0.51 Score=42.15 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=25.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|||+|+|.||+.+++.+... ++++++. ||
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~~-Dp 147 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLVC-DP 147 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999988765 4887665 44
No 152
>PLN02712 arogenate dehydrogenase
Probab=89.49 E-value=0.55 Score=44.90 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=26.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
++||||+|+|+||+.+++.+... +++|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ-GHTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 47999999999999999998876 478777654
No 153
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.39 E-value=0.52 Score=43.72 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999988765 47877664
No 154
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.39 E-value=3 Score=35.72 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=49.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|...++.+.... . +++++. . +.+.+..+.+ +|. ...++-+.-.+ .+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~-~--~~~~~~~a~~----lGa------------~~vi~~~~~~~-~~- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG-AAEIVCAD-V--SPRSLSLARE----MGA------------DKLVNPQNDDL-DH- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEe-C--CHHHHHHHHH----cCC------------cEEecCCcccH-HH-
Confidence 37899999999999888776654 5 455443 2 2344433322 121 01121100000 00
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEE
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkv 121 (188)
... .. .++|+||||+|.-.+.+.+-..++.|-+-+
T Consensus 229 -~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 229 -YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMV 263 (343)
T ss_pred -Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 000 01 258999999997545556667777766433
No 155
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.37 E-value=1.1 Score=39.00 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=71.8
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCce-----EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEE
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~~~~-----ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i 76 (188)
..||+|+|. |.+|..++..+...+-+. -+.+.|...+.+. +.-..-|-.|..+ .+.. .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~-a~g~a~Dl~~~~~-------------~~~~-~~ 66 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKA-LEGVAMELEDCAF-------------PLLA-EI 66 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccc-cceeehhhhhccc-------------cccC-ce
Confidence 469999998 999999888877543222 2233343211110 1111112222111 1111 13
Q ss_pred EEEeecCCCCCCcccCCccEEEeecCccc----CHHh------------HHHHHhCC---CcEEEEeCCCCCCCeEEeec
Q 029791 77 TVFGVRNPEEIPWAETGAEYVVESTGVFT----DKDK------------AAAHLKGG---AKKVIISAPSKDAPMFVVGV 137 (188)
Q Consensus 77 ~v~~~~~p~~~~w~~~~vdiV~e~tg~~~----~~~~------------~~~h~~~G---akkviis~ps~d~p~~V~gv 137 (188)
++. ..+.+.+. ++|+|+-+.|.-. ++.. ++.-.+.+ +.-+++|+|- |.-+.+.--
T Consensus 67 ~i~-~~~~~~~~----daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv-D~~t~~~~k 140 (322)
T cd01338 67 VIT-DDPNVAFK----DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC-NTNALIAMK 140 (322)
T ss_pred EEe-cCcHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH-HHHHHHHHH
Confidence 333 34555554 8999999999843 3221 11111122 2123335552 211111110
Q ss_pred CccCCCCCCceEEcCChhhHhHHHHHHHHHhhcCceE
Q 029791 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (188)
Q Consensus 138 N~~~~~~~~~iis~~sCtT~~lap~l~~l~~~~gI~~ 174 (188)
....+ +..+++.. |.---+++-..|.+.+|+.-
T Consensus 141 ~sg~~-p~~~ViG~---t~LDs~Rl~~~la~~lgv~~ 173 (322)
T cd01338 141 NAPDI-PPDNFTAM---TRLDHNRAKSQLAKKAGVPV 173 (322)
T ss_pred HcCCC-ChHheEEe---hHHHHHHHHHHHHHHhCcCh
Confidence 00112 23567755 56677888888889988853
No 156
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=89.27 E-value=0.89 Score=39.24 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=24.0
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
+||+|+|. |.+|..++..+...+-. +++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 48999996 99999999988876532 455553
No 157
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.06 E-value=0.56 Score=43.51 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|+|+||+.+++.+... ++++++.+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999988765 47877664
No 158
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.95 E-value=0.67 Score=39.57 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=24.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|||++|+|.+|..+++.+.+. +.+++. .|.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v-~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVG-YDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEE-EEC
Confidence 899999999999999999876 477655 455
No 159
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.90 E-value=0.35 Score=39.54 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=24.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++.+... ++.-+.+-|.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~ 60 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDF 60 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 46899999999999999998765 3543444443
No 160
>PRK05442 malate dehydrogenase; Provisional
Probab=88.69 E-value=0.98 Score=39.46 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.4
Q ss_pred CC-ccEEEEEcc-ChHHHHHHHHHHcC
Q 029791 1 MG-KVKIGINGF-GRIGRLVARVILQR 25 (188)
Q Consensus 1 m~-~~kvgI~G~-GriGr~~~r~~~~~ 25 (188)
|+ +.||+|+|. |.+|..++..+...
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhh
Confidence 54 479999997 99999988877654
No 161
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.50 E-value=0.34 Score=39.79 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=26.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|+|-+|..+++.+...+ +.-+.+.|+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 469999999999999999997664 555555554
No 162
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.49 E-value=0.68 Score=37.02 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=22.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|||+|+|+|.+|-.++-.+.+. +++++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-GHQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-TSEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhC-CCEEEEEe
Confidence 4999999999999888777776 48888873
No 163
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=88.38 E-value=0.83 Score=38.21 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
|..+||+|+|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 55579999999999999999998654
No 164
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.31 E-value=4.8 Score=36.39 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~ 38 (188)
.||+|-|||.+|+..++.+.+. +.+||++.|...
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g 241 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKG 241 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 6999999999999999988766 799999999753
No 165
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.30 E-value=1.2 Score=37.62 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
.+||+++|+|.+|..+++.+.+.+
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g 25 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKN 25 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCC
Confidence 369999999999999999998654
No 166
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.19 E-value=0.81 Score=39.04 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|||++|+|++|..+++.+.+. +.+++. .|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-g~~v~v-~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-GHEVVG-YDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEE-EEC
Confidence 899999999999999999875 477764 555
No 167
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.92 E-value=0.87 Score=37.12 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.2
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|||||+| .|++|..+++-+..+ +-|++||.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEe
Confidence 4999999 799999999988887 489999975
No 168
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=87.80 E-value=2.2 Score=37.27 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=19.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
+||+|+|.|.||..++..+....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999988886543
No 169
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.75 E-value=3.5 Score=34.35 Aligned_cols=137 Identities=16% Similarity=0.247 Sum_probs=71.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|.|.|.+|...++.+... +.+ ++++ +. +.+.+..+.++ |- ...++.+.. . .
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~-~~--~~~r~~~a~~~----Ga------------~~~i~~~~~---~-~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA-GAARVVAA-DP--SPDRRELALSF----GA------------TALAEPEVL---A-E 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEE-CC--CHHHHHHHHHc----CC------------cEecCchhh---H-H
Confidence 3789999999999988877665 465 6665 43 33333222211 10 011211100 0 0
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccC-CCCCCceEEcCChhhHhHHH
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENE-YKPELNIVSNASCTTNCLAP 161 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~-~~~~~~iis~~sCtT~~lap 161 (188)
...++. ...++|+||||+|.-.+.+.+-..++.|.+-+++.......+. .+|... +..+..++.....+...+..
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~---~i~~~~~~~~~~~i~g~~~~~~~~~~~ 253 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPV---ALDPEQVVRRWLTIRGVHNYEPRHLDQ 253 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCce---eeCHHHHHhCCcEEEecCCCCHHHHHH
Confidence 000010 1137899999999765556666777766644444322211121 223222 22344566555445556777
Q ss_pred HHHHHHh
Q 029791 162 LAKVIHD 168 (188)
Q Consensus 162 ~l~~l~~ 168 (188)
+++.|.+
T Consensus 254 ~~~~l~~ 260 (280)
T TIGR03366 254 AVRFLAA 260 (280)
T ss_pred HHHHHHh
Confidence 8888776
No 170
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.73 E-value=0.88 Score=38.84 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=24.9
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||||+|+|++|..+++.+.+. +.+++. .|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~-~dr 31 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVG-YDH 31 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEE-EEC
Confidence 899999999999999998875 477765 454
No 171
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.60 E-value=1.3 Score=37.91 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 029791 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~-~ivaI 33 (188)
||+|+|.|.+|+.++..+...+-. +++-+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~ 31 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLI 31 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 899999999999999988876533 44444
No 172
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.59 E-value=1 Score=37.98 Aligned_cols=34 Identities=38% Similarity=0.538 Sum_probs=26.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|.+.||+|+|.|.+|..++..+...+ .+++.+ |+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~-d~ 34 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMV-DI 34 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCC-CceEEE-eC
Confidence 44458999999999999999887764 676655 44
No 173
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.58 E-value=0.57 Score=41.10 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|.+|..+++.|... ++.-+.|.|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 46899999999999999988766 4655555554
No 174
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.50 E-value=0.69 Score=39.38 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=23.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..+|.|+|.|-+|..++++|...+ +.=+.|-|
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD 61 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG-IGAITLID 61 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEe
Confidence 368999999999999999998653 33333433
No 175
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.47 E-value=4.1 Score=37.28 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=50.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.||.|.|+|+.|+..++.+.... .++++ .|. ..+.+..+.+ + |-.+ +.+ ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~--~~~~~~~l~~----~------------g~~~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD--DPDALRPHAE----R------------GVAT-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC--CHHHHHHHHh----C------------CCEE-EcC-------cch
Confidence 58999999999999998777664 66555 664 2222222211 0 1001 111 112
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
++.+. +.|+||.|.|.-.+.+......+.|++
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi~ 96 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGVP 96 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 22232 569999999987776666666677773
No 176
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.32 E-value=1.1 Score=37.93 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=26.7
Q ss_pred CCc-cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~-~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|+. .||||+|.|.+|..+++.+... +.+++.. |+
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~-d~ 35 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAA-GMDVWLL-DS 35 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhc-CCeEEEE-eC
Confidence 543 5799999999999999988876 4776655 54
No 177
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.31 E-value=2.6 Score=35.04 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=24.3
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+|.|.| .|.+|+.+++.|.+. +.++.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeC
Confidence 478999 799999999999876 477777653
No 178
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.26 E-value=1.1 Score=38.03 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
+||+|+|.|.+|..++..+.+. +.++..+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-g~~V~~~ 30 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-GHDVTLW 30 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 4999999999999999988865 3665444
No 179
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=87.26 E-value=1.5 Score=37.43 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=29.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCC--CceEEEEecCCCchhhhh
Q 029791 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMT 44 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~--~~~ivaInd~~~~~~~~~ 44 (188)
+|||++|+|.+|+.+++.+.+.+ .-+-+-+.++ +.+...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHH
Confidence 59999999999999999998775 2345666666 344443
No 180
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.13 E-value=4.4 Score=37.06 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=55.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
.+||.|.|+|+-|+..+|.+.+.. .++++. |....++...-. .... ++ + .+...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~-D~~~~~~~~~~~-------~~~~-------~~--i-------~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEVTVS-DDRPAPEGLAAQ-------PLLL-------EG--I-------EVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeEEEE-cCCCCccchhhh-------hhhc-------cC--c-------eeecCc
Confidence 369999999999999999988774 655444 432222110000 0000 11 1 111112
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
.+. .+|. ..|+|+-+-|...+.+......+.|++
T Consensus 62 ~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 222 4454 789999999999999988888899995
No 181
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=86.99 E-value=1.1 Score=39.44 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+|||+|+|.+|+.+++.+...+ ++++....
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 68999999999999999998764 77765544
No 182
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=86.90 E-value=1.2 Score=38.54 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.+++-+.|+|.+|+..+|.+...|++++|+.-+.+
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s 36 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS 36 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence 48999999999999999999999999999998763
No 183
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.87 E-value=1.2 Score=38.47 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=24.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||+|+|.|.+|..++..+...+-+.-+.+-|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999888876654444444454
No 184
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=86.85 E-value=0.53 Score=41.40 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.3
Q ss_pred cEEEEEccChHHHHHHHHHHcC
Q 029791 4 VKIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~ 25 (188)
.+|||+|+||||+.+++.+..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 5899999999999999988653
No 185
>PRK06046 alanine dehydrogenase; Validated
Probab=86.84 E-value=1.5 Score=38.02 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=30.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.++||+|.|.+|+.+++++...+.++.+.|.|+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 5899999999999999999866789999999984
No 186
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=86.60 E-value=5 Score=35.25 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=49.6
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+.+|.|-| .|.||..+++.|++++.--.-.+-|+ .+.+...||.+.+.. .+. - .+... .-
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~-~~~k~~~~L~~l~~a------~~~----l-~l~~a-------DL 66 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDP-EDEKKTEHLRKLEGA------KER----L-KLFKA-------DL 66 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCc-chhhhHHHHHhcccC------ccc----c-eEEec-------cc
Confidence 36999999 69999999999999974433345555 355555567665431 000 0 01111 11
Q ss_pred cCCCCCCcccCCccEEEeecCcc
Q 029791 82 RNPEEIPWAETGAEYVVESTGVF 104 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~ 104 (188)
.|++.|+=.-.|.|+||.++-.+
T Consensus 67 ~d~~sf~~ai~gcdgVfH~Asp~ 89 (327)
T KOG1502|consen 67 LDEGSFDKAIDGCDGVFHTASPV 89 (327)
T ss_pred cccchHHHHHhCCCEEEEeCccC
Confidence 34555554555788888776554
No 187
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.59 E-value=1.3 Score=37.46 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||+|+|.|.+|..++..+... +.+++.. |.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~-d~ 35 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-GYDVLLN-DV 35 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEEEE-eC
Confidence 46899999999999999988766 4666544 54
No 188
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.53 E-value=0.4 Score=38.86 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||+|+|.|-+|..++..+... ++.-+.+.|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECC
Confidence 46899999999999999988765 4654555554
No 189
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.52 E-value=1.3 Score=42.70 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=74.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhh-------hhcccccCcCCCcceEEeCCCeeEECCEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM-------FKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l-------~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i 76 (188)
.||+|+|.|.+|+.++..+....+++++- .|+ +.+.+... +...-..|+.. .+. . +. .. ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l-~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~-~-~~---~~--~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRI-KDI--NPQGINHALKYSWDLLDKKVKRRHLK-PSE-R-DK---QM--ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEE-EeC--CHHHHHHHHHHHHHHHHHHHHcCCCC-HHH-H-HH---HH--hcE
Confidence 48999999999999988776344577555 455 23322221 11111122221 000 0 00 00 123
Q ss_pred EEEeecCCCCCCcccCCccEEEeecCcccCHH-----hHHHHHhCCCcEEEEeCCCC----------CCCeEEeecCccC
Q 029791 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKD-----KAAAHLKGGAKKVIISAPSK----------DAPMFVVGVNENE 141 (188)
Q Consensus 77 ~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~-----~~~~h~~~Gakkviis~ps~----------d~p~~V~gvN~~~ 141 (188)
+.. .+.+.+ .++|+|+||...-...+ ....++..++ ++-|+.|. ..|-=+.|. +.
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~--Hf 448 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGL--HY 448 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEE--ec
Confidence 332 233333 38999999987655442 2223333444 66676652 123222222 33
Q ss_pred CCCC-----CceEEcCChhhHhHHHHHHHHHhhcCceEEE
Q 029791 142 YKPE-----LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176 (188)
Q Consensus 142 ~~~~-----~~iis~~sCtT~~lap~l~~l~~~~gI~~~~ 176 (188)
+.|. -.||..+.++-..+.-+...+. ..|..-+.
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~-~~gk~pv~ 487 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAK-KQGKTPIV 487 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHH-HcCCceEE
Confidence 3332 2467776666666666666554 45654433
No 190
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.37 E-value=1.3 Score=38.50 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||||+|+|.+|+.+++.+.+.. ++++...++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~~ 35 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLRK 35 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEECc
Confidence 368999999999999999998764 676555554
No 191
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.15 E-value=1.2 Score=39.65 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=25.3
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCceEEEE
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~~~~ivaI 33 (188)
+.||+|+|+ |.||+.+++++.+..+.+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 579999999 9999999999986545666554
No 192
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.01 E-value=0.95 Score=38.24 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.6
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||||+|+|.+|+.+++.+.+. +++++.. |.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~~~-dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLHVT-TI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEEEE-cC
Confidence 699999999999999998876 4777654 54
No 193
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.97 E-value=1.5 Score=37.18 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=26.1
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|...||+|+|.|.+|+.++..+... +.+++.+ |.
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~-G~~V~l~-d~ 34 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFART-GYDVTIV-DV 34 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhc-CCeEEEE-eC
Confidence 4335899999999999999988776 4676554 44
No 194
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.96 E-value=6 Score=34.01 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=21.9
Q ss_pred cEEEEEccChHHHHHHHHHHc-CCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~-~~~~~ivaIn 34 (188)
-+|.|.|.|.+|...++.+.. ....+++++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 378999999999987776653 3335565553
No 195
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.62 E-value=1.3 Score=37.82 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+++|+|+|++|+.+++.+.... .+++..+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~ 181 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGA 181 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999998764 6766554
No 196
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=85.61 E-value=6.1 Score=33.15 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|-|-| .|.||+.+++.+.+.+ .+++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 5799999 7999999999998874 6777665
No 197
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=85.52 E-value=1.6 Score=36.61 Aligned_cols=105 Identities=22% Similarity=0.398 Sum_probs=60.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCC--------CchhhhhhhhhcccccCc-CCCcceEEeCCCeeEECC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~--------~~~~~~~~l~~yDS~~g~-~~~~~v~~~~~~~l~i~g 73 (188)
-.+++|-|||.+|+.+++.+.+. +..+++|.|.. .+.+.+..+. +. +|. +. .--....++ .
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~-~~~~~~~~~-----~ 101 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVD-DYPLESPDG-----A 101 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHST-TGTHTCSST-----S
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccc-ccccccccc-----e
Confidence 36899999999999999999887 59999997643 1334333321 11 111 11 000000000 0
Q ss_pred EEEEEEeecCCCCCCcccCCccEEEeec-CcccCHHhHHHHHhCCCcEEEEeC
Q 029791 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 74 ~~i~v~~~~~p~~~~w~~~~vdiV~e~t-g~~~~~~~~~~h~~~Gakkviis~ 125 (188)
+ .+ .. .+++ |. .++|+.+=|+ +.-++.+.++..++.||| +|+-+
T Consensus 102 ~--~~-~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIveg 146 (244)
T PF00208_consen 102 E--YI-PN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEG 146 (244)
T ss_dssp E--EE-CH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEES
T ss_pred e--Ee-cc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeC
Confidence 1 11 11 1111 43 5899999987 667777887767788886 45643
No 198
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=85.52 E-value=1.3 Score=37.76 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|||++|+|++|..+++.+.+.. +++.. .|.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v-~~~ 31 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHV-TTI 31 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEE-EeC
Confidence 7999999999999999998764 66653 444
No 199
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.51 E-value=1.5 Score=37.67 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=24.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
++||+|+|.|.+|..++..+... +.++...+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~ 34 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-GVPVRLWA 34 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEe
Confidence 36999999999999999988866 36655544
No 200
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.17 E-value=1.4 Score=37.59 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|+|.+|..+++.+.+.+ .++. +.|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~-v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQ-VFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence 48999999999999999998764 6654 4454
No 201
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.04 E-value=1.7 Score=36.79 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC---ceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~---~~ivaInd 35 (188)
+||+|+|+|.+|..+++.+.+.+. .+++.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 589999999999999999876542 46666654
No 202
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.99 E-value=1.2 Score=42.69 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|.|.+|+.++..+....+++++ +.|+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d~ 336 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKDI 336 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 4899999999999998766533346644 4555
No 203
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.95 E-value=16 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.||-|+|.|.+|...++.+.+.+ .+++.|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 68999999999999999888765 6777665
No 204
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=84.90 E-value=3.5 Score=31.69 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=52.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
||+|+|.|..|..++..+.+.+ .+ |.+-.. +.+.+..+-+.....-.++ .+.. .- .+.+ ..|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~-V~l~~~--~~~~~~~i~~~~~n~~~~~--~~~l------~~---~i~~--t~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HE-VTLWGR--DEEQIEEINETRQNPKYLP--GIKL------PE---NIKA--TTDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EE-EEEETS--CHHHHHHHHHHTSETTTST--TSBE------ET---TEEE--ESSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CE-EEEEec--cHHHHHHHHHhCCCCCCCC--Cccc------Cc---cccc--ccCH
Confidence 7999999999999988887765 33 344444 3444433332211000011 1111 11 1333 2444
Q ss_pred CCCCcccCCccEEEeecCcccCHHhHH---HHHhCCCcEEEEeCC
Q 029791 85 EEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAP 126 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~---~h~~~Gakkviis~p 126 (188)
++.- .+.|+++-+++.+--++.++ .|++.+. .+++.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 3221 37899999999988776555 3444555 566665
No 205
>PRK07680 late competence protein ComER; Validated
Probab=84.87 E-value=2.2 Score=35.75 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=24.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc--eEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDV--ELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~--~ivaInd~ 36 (188)
||+|+|+|.+|+.+++.+.+.+.+ +-+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 799999999999999998866422 33455565
No 206
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.49 E-value=1.4 Score=39.27 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+||+|+|+|.+|..++..+.+. +.++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-GHEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-CCeEEEEE
Confidence 3899999999999999988876 47776663
No 207
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.41 E-value=0.89 Score=37.93 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=24.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..||.|+|.|-+|..+++.|...+ +.-+.+.|
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G-vg~i~lvD 63 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG-VGTLTLVD 63 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 368999999999999999987654 43334444
No 208
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.35 E-value=3.7 Score=36.43 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=54.6
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEE-EEeecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT-VFGVRN 83 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~-v~~~~~ 83 (188)
.++|.|+|-+|-..++.+.....-.|+|| |+ .++.+....++--| =.+|.+... +-+ -
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~--~~~Kl~~A~~fGAT----------------~~vn~~~~~~vv~--~ 246 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DI--NPEKLELAKKFGAT----------------HFVNPKEVDDVVE--A 246 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEE-eC--CHHHHHHHHhcCCc----------------eeecchhhhhHHH--H
Confidence 68999999999988887776665677777 44 34444443332211 223332221 100 0
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
..++ | ..|+|++|||+|.-...+.+-.....+=+-|+|
T Consensus 247 i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 247 IVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 1111 2 248999999999877666554444333333444
No 209
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.34 E-value=1.7 Score=37.20 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=24.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+||+|+|+|.+|+.+++.+.... .++...+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~ 34 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVRVWS 34 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEEEEe
Confidence 369999999999999999988664 5665444
No 210
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.34 E-value=0.88 Score=37.91 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=25.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++.+.... +.-+.+.|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDF 56 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 368999999999999999987654 544445554
No 211
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=84.07 E-value=0.58 Score=40.67 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=24.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||.|+|.|-+|-.+++.|...+ +.=+.+.|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECC
Confidence 6899999999999999997663 555555554
No 212
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.88 E-value=3.4 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..+++|+|.|.+|+.+++.+...+ ...+.+.|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 368999999999999999998764 444555555
No 213
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.72 E-value=2.4 Score=30.28 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=23.3
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 6 IGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 6 vgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|-|.|+|++|+.+++.+.+ .+.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence 4689999999999999998 4577777765
No 214
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.71 E-value=2.1 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.2
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++||+|+|.|.||..++..+.+.. .+++.+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~ 35 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLL 35 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 4579999999999999988877653 4544443
No 215
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=83.49 E-value=1.3 Score=37.66 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=29.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhc
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY 49 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~y 49 (188)
+++|++|+||+|..+.+.+.+.. -++|+- |. +.+....+-.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y-D~--n~~av~~~~~~ 42 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY-DV--NQTAVEELKDE 42 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE-cC--CHHHHHHHHhc
Confidence 48999999999999999998764 676654 43 34444444443
No 216
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=83.38 E-value=2.1 Score=33.87 Aligned_cols=149 Identities=16% Similarity=0.278 Sum_probs=66.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhh-------hhhhhcccccCcCCCcceEEeCCCeeEECCEEEE
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM-------TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~-------~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~ 77 (188)
||+|+|.|.+|+.++..+... +++++ +.|+ +.+.+ ...++..--.|++...+... . .+ .++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~-l~d~--~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~-----~-~~--~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVT-LYDR--SPEALERARKRIERLLDRLVRKGRLSQEEADA-----A-LA--RIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEE-EE-S--SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHH-----H-HH--TEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEE-EEEC--ChHHHHhhhhHHHHHHhhhhhhccchhhhhhh-----h-hh--hcc
Confidence 799999999999998877766 46644 4455 22322 11121111122221000000 0 11 122
Q ss_pred EEeecCCCCCCcccCCccEEEeecCcccCHHhH-HHHHhC--CCcEEEEeCCCC----------CCC--eEEe-ecCccC
Q 029791 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-AAHLKG--GAKKVIISAPSK----------DAP--MFVV-GVNENE 141 (188)
Q Consensus 78 v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~-~~h~~~--Gakkviis~ps~----------d~p--~~V~-gvN~~~ 141 (188)
+ ..|.+.+ .++|+|+||...-...++. -..++. ....++.|+.|. +-| .+.+ -.|+-.
T Consensus 69 ~--~~dl~~~----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~ 142 (180)
T PF02737_consen 69 F--TTDLEEA----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPH 142 (180)
T ss_dssp E--ESSGGGG----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTT
T ss_pred c--ccCHHHH----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccc
Confidence 2 2344433 2899999999865443221 123332 222366677652 122 2322 223322
Q ss_pred CCCCCceEEcCChhhHhHHHHHHHHHhhcCc
Q 029791 142 YKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172 (188)
Q Consensus 142 ~~~~~~iis~~sCtT~~lap~l~~l~~~~gI 172 (188)
..+--.||..+...-..+.-+...+.+ .|-
T Consensus 143 ~~~lVEvv~~~~T~~~~~~~~~~~~~~-~gk 172 (180)
T PF02737_consen 143 LMPLVEVVPGPKTSPETVDRVRALLRS-LGK 172 (180)
T ss_dssp T--EEEEEE-TTS-HHHHHHHHHHHHH-TT-
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHH-CCC
Confidence 222235888888666666666666654 354
No 217
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=83.31 E-value=3.8 Score=31.16 Aligned_cols=108 Identities=22% Similarity=0.308 Sum_probs=56.9
Q ss_pred EEEEc-cChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhhhhh-cccccCcCCCcceEEeCC-------CeeEECCEE
Q 029791 6 IGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDD-------KTLLFGEKP 75 (188)
Q Consensus 6 vgI~G-~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~l~~-yDS~~g~~~~~~v~~~~~-------~~l~i~g~~ 75 (188)
|.|.| +|-||+..++.+.+.| +|+++++.-- .+.+.|....+ |.. ..+...+. +.+.-.+..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~~q~~~f~p-------~~v~i~~~~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLAEQAREFKP-------KYVVIADEEAYEELKKALPSKGPG 72 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHHHHHHHHT--------SEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHHhhhcCCC
Confidence 67999 8999999999998766 6999999874 35555544433 211 01111000 000001111
Q ss_pred EEEEeecC-CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 76 VTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 76 i~v~~~~~-p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
++++...+ ..++- ...++|+|+.+.-.+...+-.-..+++|. ++-+
T Consensus 73 ~~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk-~iaL 119 (129)
T PF02670_consen 73 IEVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAGK-DIAL 119 (129)
T ss_dssp SEEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTTS-EEEE
T ss_pred CEEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCCC-eEEE
Confidence 22222111 11110 11367888888888877777777788874 4444
No 218
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=83.04 E-value=2 Score=39.52 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
.+|+|+|+|+|||.+++.+.... ++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999888664 675544
No 219
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.95 E-value=0.94 Score=35.79 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=23.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||.|+|.|-+|..+++.+... ++.-+.+-|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 689999999999999988765 3553444443
No 220
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=82.83 E-value=6.3 Score=33.85 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=50.1
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+-||-|.| .|++|+.+.+.+...+.-.+.+|| | +++. .+ +.|.+ . -
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~-p-----------------~~~~-~~----------v~G~~--~--y 52 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT-P-----------------GKGG-TT----------VLGLP--V--F 52 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC-C-----------------CCCc-ce----------ecCee--c--c
Confidence 35899999 699999999998776522333343 2 1111 11 11111 1 0
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
++.+++|..- ++|+++-+.+.....+..+...++|+|.+||
T Consensus 53 ~sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 53 DSVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CCHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 2233344211 2688888888776666666677778776544
No 221
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=82.66 E-value=1.9 Score=38.22 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..+||+||||||+.+++.+... ++.++.-.+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~-gm~vI~~dp 177 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM-GMHVIGYDP 177 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc-CceEEeecC
Confidence 4699999999999999988755 355555433
No 222
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.54 E-value=2.1 Score=41.32 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|.|.+|+.++..+... +++++- .|+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l-~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVM-KDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEE-EeC
Confidence 4899999999999998877765 576554 454
No 223
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.31 E-value=28 Score=29.13 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=68.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
+|.|.|.|.+|..+++.+... +++++++.+.. +....+-+ +|- . ..++.+. .+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~---~~~~~~~~----~g~-~-----------~~~~~~~-------~~ 222 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQ-GAEVFAFTRSG---EHQELARE----LGA-D-----------WAGDSDD-------LP 222 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCh---HHHHHHHH----hCC-c-----------EEeccCc-------cC
Confidence 788999999999888766655 48888776642 22222211 110 0 1111100 01
Q ss_pred CCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCCCCceEEcCChhhHhHHHHHH
Q 029791 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAK 164 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~~~~iis~~sCtT~~lap~l~ 164 (188)
+.++|+++++++.....+.+..+++.|.+-+++ +.... -+++++...+.....+...+.-....+..+++
T Consensus 223 ------~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~-g~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (329)
T cd08298 223 ------PEPLDAAIIFAPVGALVPAALRAVKKGGRVVLA-GIHMS---DIPAFDYELLWGEKTIRSVANLTRQDGEEFLK 292 (329)
T ss_pred ------CCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEE-cCCCC---CCCccchhhhhCceEEEEecCCCHHHHHHHHH
Confidence 236899999988776778888888877643322 22111 11233322222233444444444556666666
Q ss_pred HHHh
Q 029791 165 VIHD 168 (188)
Q Consensus 165 ~l~~ 168 (188)
.+.+
T Consensus 293 l~~~ 296 (329)
T cd08298 293 LAAE 296 (329)
T ss_pred HHHc
Confidence 6544
No 224
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.28 E-value=0.99 Score=36.46 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++.+...+ +.-+.+.|+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~ 53 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDD 53 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecC
Confidence 368999999999999999998764 533334443
No 225
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.17 E-value=2.7 Score=35.52 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
|...||+|+|.|.+|+.++..+... +.+++.+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~-G~~V~l~ 32 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFH-GFDVTIY 32 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhc-CCeEEEE
Confidence 4346899999999999999888765 3564444
No 226
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.17 E-value=8.7 Score=34.30 Aligned_cols=94 Identities=23% Similarity=0.265 Sum_probs=52.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
..++.|.|.|++|+..++.+.+.. .+++.+ |.. +.+.+...++ +.+. .+ ++++...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~~-~~~~~~~~~~-----------~l~~-~~---------~~~~~~~ 60 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVILT-DEK-EEDQLKEALE-----------ELGE-LG---------IELVLGE 60 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eCC-chHHHHHHHH-----------HHHh-cC---------CEEEeCC
Confidence 468999999999999999998775 665544 542 1111111110 0000 01 1111111
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
.+++. ..+.|+|+-++|.....+......+.|. .|++-
T Consensus 61 ~~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~ 98 (450)
T PRK14106 61 YPEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGE 98 (450)
T ss_pred cchhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 12111 1268999999998777666666666676 34443
No 227
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.08 E-value=4.4 Score=34.41 Aligned_cols=137 Identities=12% Similarity=0.189 Sum_probs=69.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|...++.+... +.. ++++.. +.+.+..+.++ |- ...++-+.-.. .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~---~~~~~~~~~~~----ga------------~~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL-GAEDVIGVDP---SPERLELAKAL----GA------------DFVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECC---CHHHHHHHHHh----CC------------CEEEcCCcchH---H
Confidence 4789999999999988877665 366 766543 23333222221 10 01122110000 0
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCccCCCCCCceEEcCChhhHhHHHH
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~~~~~~~~iis~~sCtT~~lap~ 162 (188)
...++. ...++|+||||+|.....+.+-..++.|.+-+++..++ + +.+-+ ....+..+..++..-.++...+..+
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~~ 296 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG-E-LTIEV--SNDLIRKQRTLIGSWYFSVPDMEEC 296 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC-C-cccCc--HHHHHhCCCEEEEEecCCHHHHHHH
Confidence 000000 01278999999997655455666777666433343322 2 11111 0112222344555444455667777
Q ss_pred HHHHHh
Q 029791 163 AKVIHD 168 (188)
Q Consensus 163 l~~l~~ 168 (188)
++.+.+
T Consensus 297 ~~~~~~ 302 (339)
T cd08239 297 AEFLAR 302 (339)
T ss_pred HHHHHc
Confidence 777765
No 228
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.05 E-value=2.7 Score=35.75 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.||+|+|.|.+|..++..+... +.+++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 5899999999999999988765 46766553
No 229
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.99 E-value=2.4 Score=37.85 Aligned_cols=89 Identities=22% Similarity=0.397 Sum_probs=52.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 80 (188)
|+..||.|+|+|.+|+.+++.+.+.+ .++++. |.. .+.+..+ +... .. .
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g~-D~~--~~~~~~~-------~~~~--------~~-~----------- 49 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIGV-DKS--LEALQSC-------PYIH--------ER-Y----------- 49 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEEE-eCC--ccccchh-------HHHh--------hh-h-----------
Confidence 66679999999999999999888765 565554 432 1111000 0000 00 0
Q ss_pred ecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 81 ~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
..+++.++ .+.|+||-+.|.-...+.....+++|++ +++-
T Consensus 50 ~~~~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 50 LENAEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred cCCcHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 01122221 1468888888877666777777888884 4543
No 230
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=81.86 E-value=2 Score=39.47 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|||+|+|.+|..+++++.+.. ++|.. .|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v-~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISV-YNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEE-EeC
Confidence 48999999999999999998774 66554 454
No 231
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.71 E-value=9.9 Score=34.38 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|.|+|.|.+|...++.+.+.+ .+++.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999998888764 7766554
No 232
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.00 E-value=1.6 Score=42.17 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|.|.+|..++..+... +++++- .|+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l-~d~ 366 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVL-KDA 366 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEE-ecC
Confidence 4799999999999998877765 577554 455
No 233
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=80.78 E-value=16 Score=30.59 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=50.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|.|.|.+|..+++.+... +++++++... .+...++.++ |. . ..++-+ +
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~---~~~~~~~~~~----g~-~-----------~~~~~~--------~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRH---SEKLALARRL----GV-E-----------TVLPDE--------A 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCC---HHHHHHHHHc----CC-c-----------EEeCcc--------c
Confidence 3788999999999988877766 4777666542 3444333322 11 0 111100 0
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
. .++ .++|+++||+|.-...+.+..+++.+.+
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0 122 3799999999875455666677877664
No 234
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.72 E-value=2.7 Score=35.91 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+||+|+|.|.+|..++..+... +.+++.. |.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~-d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLW-DA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeEEE-eC
Confidence 4899999999999999988876 4666555 44
No 235
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=80.52 E-value=4 Score=33.64 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=51.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
++++|.|+|.||..+++.+... +.|++-.+-- +++.+.-+.+|- +. ....+ ..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a-g~eV~igs~r--~~~~~~a~a~~l---------------~~-~i~~~--------~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA-GHEVIIGSSR--GPKALAAAAAAL---------------GP-LITGG--------SN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC-CCeEEEecCC--ChhHHHHHHHhh---------------cc-ccccC--------Ch
Confidence 5999999999999999988765 3666655432 334443333221 10 10111 11
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHh-CCCcEEEEeCC
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK-GGAKKVIISAP 126 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~-~Gakkviis~p 126 (188)
++.. ...|+||-+.+-.--.+-.+.+.+ -| -|+||+..
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~t 93 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDAT 93 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecC
Confidence 2212 256888888886655555554443 23 35788654
No 236
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.44 E-value=22 Score=33.07 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-||.|+|.|.+|...++.+...+ .+ |-+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeC
Confidence 58999999999999988887664 55 555566
No 237
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=80.24 E-value=2.9 Score=36.01 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||+|+|+|.||+.+++.+.... ..-+.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG-VAEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 368999999999999999887643 444555555
No 238
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.20 E-value=2.8 Score=36.89 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=23.3
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 93 ~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
..|++|||||...+.+.+-..++.|=. +++
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt-~vl 271 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT-VVL 271 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE-EEE
Confidence 489999999999999888777775442 444
No 239
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=80.17 E-value=2.5 Score=37.78 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=27.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhh
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF 47 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~ 47 (188)
||+|+|+|.+|..++..+. . +.++++++- +.+.+..+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~---d~~kv~~l~ 39 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDI---LPSRVAMLN 39 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEEC---CHHHHHHHH
Confidence 8999999999999985544 4 588777753 445554443
No 240
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=79.94 E-value=3 Score=33.12 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+|+|+|||.-|+.++.+|.+++ ++++--..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 58999999999999999999885 77664443
No 241
>PRK07877 hypothetical protein; Provisional
Probab=79.84 E-value=1.1 Score=43.42 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=56.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCc-eEEEEecC-CCchhhhhhhhhcccccCcCCCcceEEeCCCeeEEC-CEEEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDP-FITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVF 79 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd~-~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~-g~~i~v~ 79 (188)
..||+|+|.| +|..++..|.... + .=+.+.|. ..++..+-..+--.+.-|+.+ .++-. ..-..+| .-.|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K-v~~a~--~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNK-AVVAA--RRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHH-HHHHH--HHHHHHCCCCEEEEE
Confidence 3689999999 8999988877553 3 22233332 223333222211112234433 22111 0001223 1233333
Q ss_pred eec-CCCCCCcccCCccEEEeecCcccCHHhHH-HHHhCCCcEEEEeCC
Q 029791 80 GVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (188)
Q Consensus 80 ~~~-~p~~~~w~~~~vdiV~e~tg~~~~~~~~~-~h~~~Gakkviis~p 126 (188)
.+. ++++++=--.++|+|+||+..|.++-... ...+.|.. +|++.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP--~i~~~ 228 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIP--VLMAT 228 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC--EEEEc
Confidence 321 23333211137899999999997765443 23345553 44444
No 242
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.65 E-value=3.3 Score=35.50 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.|++|+|+|++|+.+++.+...+ .++..++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~ 182 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGA 182 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 68999999999999999888764 6665554
No 243
>PRK06444 prephenate dehydrogenase; Provisional
Probab=79.36 E-value=3.3 Score=33.63 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=24.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcC------CCceEEEEecC
Q 029791 4 VKIGING-FGRIGRLVARVILQR------DDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~------~~~~ivaInd~ 36 (188)
+||+|+| .|++|+.+.+.+.+. .+.++|-++-|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~~~~DlVilavP 40 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYIKKADHAFLSVP 40 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEECCCCEEEEeCC
Confidence 4899999 699999988877653 24556666655
No 244
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.32 E-value=7 Score=33.92 Aligned_cols=97 Identities=18% Similarity=0.250 Sum_probs=51.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|...++.+... +. +++++. . +.+.+..+.++ |- ...++.+.-.. . .
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~-~--~~~r~~~a~~~----Ga------------~~~i~~~~~~~-~-~ 250 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA-GASQVVAVD-L--NEDKLALAREL----GA------------TATVNAGDPNA-V-E 250 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEEEc-C--CHHHHHHHHHc----CC------------ceEeCCCchhH-H-H
Confidence 3789999999999888777665 45 465553 3 33444333221 11 01121100000 0 0
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEe
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis 124 (188)
...++. ..++|+||||+|.-.+.+.+-..++.|-+-+.+.
T Consensus 251 ~i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 251 QVRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 000111 1268999999997555666666777666434443
No 245
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.30 E-value=16 Score=33.17 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|.|+|+-|+..+|.+.+.. .+++ +.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v~-~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQA-LTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEEE-EEcC
Confidence 58999999999999999988764 6644 4554
No 246
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.93 E-value=1.7 Score=38.28 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=25.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++.|... ++.-+.+.|.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~-Gvg~i~lvD~ 60 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA-GVGHITIIDD 60 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 46999999999999999988765 3544555554
No 247
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.87 E-value=12 Score=32.54 Aligned_cols=30 Identities=13% Similarity=0.493 Sum_probs=23.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+|.|.|.|.+|...++.+... +.+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 788999999999988877665 467766644
No 248
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=78.76 E-value=2.9 Score=37.05 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaI 33 (188)
.||+|+| +|.+|+.+++++...+ .++...
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~ 128 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL 128 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEe
Confidence 6899999 9999999999998764 554444
No 249
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.52 E-value=1.7 Score=36.16 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=23.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||.|+|.|-+|..+++.+...+ +.-+.|-|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDM 31 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6899999999999999987654 444444443
No 250
>PLN02494 adenosylhomocysteinase
Probab=78.46 E-value=3.5 Score=38.01 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|+|.|+|.||+.+++.+... +++++++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999988766 47766653
No 251
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.45 E-value=3.5 Score=34.79 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|.|.+|+.++..+... +.+++.+ |.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~-d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLV-DI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-CCcEEEE-eC
Confidence 4899999999999999988766 4665544 44
No 252
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=78.29 E-value=3.4 Score=37.29 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
.+|+|+|+|.||+.+++.+... +.+++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-Ga~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-GARVIVT 224 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-cCEEEEE
Confidence 5899999999999999988765 4776665
No 253
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=78.28 E-value=4.1 Score=34.94 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=26.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+||-|-| .|.||+.+++.+.+..+.+|++++-
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4899999 6999999999998765578888863
No 254
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.02 E-value=3.6 Score=36.68 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|||.|.|+|++|+.+++.+.+. +.+++.|.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEE
Confidence 3899999999999999988765 47888774
No 255
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.99 E-value=4.4 Score=31.05 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.4
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEecC
Q 029791 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vgI~G-~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|.|.| .|.+|+.+++.+.+++ .+++++.-.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 67899 7999999999999886 999998864
No 256
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=77.94 E-value=6.4 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.4
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~ 26 (188)
..||+|+|. |.+|..++..+...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 479999997 999999988887654
No 257
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=77.85 E-value=2.4 Score=39.16 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=25.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+.+||++|+|.+|+.+++++.+. +++++.-|
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~-G~~V~V~N 36 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK-GFPISVYN 36 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC-CCeEEEEC
Confidence 36899999999999999999976 47766544
No 258
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.76 E-value=4.1 Score=34.11 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+||+|+|.|.+|..++..+.+.+ .+++.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 38999999999999988887653 5655554
No 259
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=77.75 E-value=5.5 Score=33.92 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=21.6
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 6 vgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
|+|+|.|.+|..++..+...+-.++ .+.|..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV-~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDV-VLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEE-EEEeCC
Confidence 6899999999998877765431254 444653
No 260
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=77.74 E-value=3.9 Score=37.59 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=25.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+||||+|.|.||+.++..+... +++++ +.|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-G~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-GIDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 5899999999999999988876 46654 5565
No 261
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.73 E-value=22 Score=31.74 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=50.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.+|.|+|+|+.|+..++.+... +.++++ .|..........| +.| + .+.. ...+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~-G~~v~~-~D~~~~~~~~~~l-----------------~~g--~-----~~~~-~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLAR-GVTPRV-IDTRITPPGLDKL-----------------PEN--V-----ERHT-GSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCeEEE-EcCCCCchhHHHH-----------------hcC--C-----EEEe-CCCC
Confidence 4799999999999999876665 466555 5532111100010 011 1 1111 1122
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
+..++ +.|+||-+.|.-.+.+......+.|++ |++-
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~ 95 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVGD 95 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEH
Confidence 22221 468888888876666666677788884 5553
No 262
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.69 E-value=2.2 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|+|.|.+|+-++..+... +++++-+ |.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~-d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMK-DI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEE-eC
Confidence 4899999999999998877655 4665444 44
No 263
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=77.55 E-value=1.5 Score=38.86 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=55.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC-CCchhhhhhhhhcc-cccCcCCCcceEE-----eCCCeeEECCEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKV-----KDDKTLLFGEKP 75 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~-~~~~~~~~~l~~yD-S~~g~~~~~~v~~-----~~~~~l~i~g~~ 75 (188)
..||.|+|.|-+|..+++.+...+ +.-+.+.|. ..+++.+..-+-|+ +.-|+.. .+.-. -+. .+.+....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~K-a~~~~~~l~~~np-~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPK-VEVAAERLKEIQP-DIRVNALR 117 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHH-HHHHHHHHHHHCC-CCeeEEee
Confidence 368999999999999999988654 533444443 22333333222221 1123322 11100 011 12222222
Q ss_pred EEEEeecCCCCCCcccCCccEEEeecCcccCHHhHHH-HHhCCCc
Q 029791 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA-HLKGGAK 119 (188)
Q Consensus 76 i~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~-h~~~Gak 119 (188)
-.+ +++++..--.+.|+|++|+..+.++..... ..+.|.+
T Consensus 118 ~~i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 118 ERL----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred eec----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 222 122221111378999999999987754332 3345654
No 264
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.33 E-value=4.2 Score=37.61 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||||+|.|.+|+.+++.+... +++++.. |.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~-D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLY-DA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEE-eC
Confidence 5799999999999999988765 5776644 54
No 265
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.16 E-value=21 Score=32.54 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||.|.|+|..|+.+++.+.... .+ |.+.|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~-V~~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CD-VVVADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CE-EEEECC
Confidence 58999999999999999888765 55 445554
No 266
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=77.16 E-value=32 Score=26.62 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.||-|+|-|++|...++.+.+.+ .+++.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 68999999999999999988764 6666663
No 267
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.15 E-value=35 Score=29.16 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=68.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEe-ec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~-~~ 82 (188)
-+|.|.|.|.+|...++.+...+ .+++++.. +.+.+..+.++ |- . ..++-+...... ..
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----Ga-~-----------~~i~~~~~~~~~~~~ 227 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDI---DPEKLEMMKGF----GA-D-----------LTLNPKDKSAREVKK 227 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHh----CC-c-----------eEecCccccHHHHHH
Confidence 37899999999999888777664 67776643 33444333221 10 0 112110000000 00
Q ss_pred CCCCCCcccCCc----cEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCc-cCCCCCCceEEcCChhhH
Q 029791 83 NPEEIPWAETGA----EYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNE-NEYKPELNIVSNASCTTN 157 (188)
Q Consensus 83 ~p~~~~w~~~~v----diV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~-~~~~~~~~iis~~sCtT~ 157 (188)
...++ ....++ |+|+||+|.-...+.+-..++.|-+-+++..++...+ ++. +.+.....++.+-.|+..
T Consensus 228 ~~~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~ 301 (349)
T TIGR03201 228 LIKAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTE-----YRLSNLMAFHARALGNWGCPPD 301 (349)
T ss_pred HHHhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcc-----cCHHHHhhcccEEEEEecCCHH
Confidence 00000 011244 4899999976555666667777664333332322111 111 112112345555555556
Q ss_pred hHHHHHHHHHh
Q 029791 158 CLAPLAKVIHD 168 (188)
Q Consensus 158 ~lap~l~~l~~ 168 (188)
.+..+++.+.+
T Consensus 302 ~~~~~~~~i~~ 312 (349)
T TIGR03201 302 RYPAALDLVLD 312 (349)
T ss_pred HHHHHHHHHHc
Confidence 67777777765
No 268
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=77.12 E-value=2.7 Score=35.57 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=57.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCC--CceEEEEecCCC-chhhhhhhhhcccccCcCCCcceEEe-----CCCeeEECCEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVK-----DDKTLLFGEKP 75 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~--~~~ivaInd~~~-~~~~~~~l~~yDS~~g~~~~~~v~~~-----~~~~l~i~g~~ 75 (188)
-+|.|+|.|=+|...+++|.... .+.++=..|... +.+...|.+. ++.|+-. -++..| +- ...+....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~K-v~vm~eri~~InP-~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPK-VEVMKERIKQINP-ECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHH-HHHHHHHHHhhCC-CceEeehH
Confidence 47999999999999999998653 233322222211 2343334442 2355533 221110 00 01121111
Q ss_pred EEEEeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHh-CCCcEEEEeCCC
Q 029791 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK-GGAKKVIISAPS 127 (188)
Q Consensus 76 i~v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~-~Gakkviis~ps 127 (188)
.-+ .+.+.+++.. .+.|||+||.-....+-..-.+.. .+. +||-|+..
T Consensus 107 ~f~-t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss~Ga 155 (263)
T COG1179 107 DFI-TEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKI-PVISSMGA 155 (263)
T ss_pred hhh-CHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCC-CEEeeccc
Confidence 111 2233344433 378999999988766644433333 333 45545443
No 269
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=76.95 E-value=18 Score=32.21 Aligned_cols=30 Identities=43% Similarity=0.660 Sum_probs=23.6
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||.++|+|.+|+.++|.+.+.. .++ .++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V-~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEV-TVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEE-EEEeC
Confidence 5889999999999888887764 664 45664
No 270
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=76.87 E-value=3.4 Score=36.07 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.4
Q ss_pred CCccEEEEEccChHHHHHHHHHHc------CCCceEEEEecCC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDPF 37 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~------~~~~~ivaInd~~ 37 (188)
|+++||+|+|.|.||-.-+-.+.+ .|..++..+.|-+
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 566899999999999877655543 3557777777643
No 271
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.71 E-value=7.1 Score=34.00 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.7
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCC
Q 029791 4 VKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~ 26 (188)
.||+|+|. |++|..++..+...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999997 999999998887654
No 272
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.70 E-value=4.5 Score=34.79 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|||+|+|.|.+|..++..+...+-..-+.+.|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 389999999999999998877653344445554
No 273
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.31 E-value=4.9 Score=37.87 Aligned_cols=39 Identities=21% Similarity=0.544 Sum_probs=29.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhh
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l 46 (188)
.+|-|.|+||+|+.++|.+.+. +.+++.|.. |++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4789999999999999988765 478888853 45554333
No 274
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=76.25 E-value=6.4 Score=34.17 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=29.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.++||+|.|.+|+.+++++.....++-+.|.|..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~ 162 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT 162 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 5899999999999999998766668888898873
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=76.24 E-value=22 Score=31.36 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=73.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|+|.|+|=+|...++.+.... .+++++.-. .+.+....+. |-...++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~l----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKKL----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHHh----------------CCcEEEEcC--------C
Confidence 48999999988888777766564 999999653 3333222211 111333321 1
Q ss_pred CCCCC-cccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-CCCCeEEeecCcc-CCCCCCceEEcCChhhHhHH
Q 029791 84 PEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLA 160 (188)
Q Consensus 84 p~~~~-w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-~d~p~~V~gvN~~-~~~~~~~iis~~sCtT~~la 160 (188)
++.+. ..+ .+|+++++.+ ..+.+.+-..++.|=+-|++-.|. .+.|.+ +.- ..-.+..|+.+..=|-.=+-
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~----~~~~li~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLL----PAFLLILKEISIVGSLVGTRADLE 293 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCC----CHHHhhhcCeEEEEEecCCHHHHH
Confidence 11111 111 2899999999 888888888888766556665553 221211 111 11123456666665655555
Q ss_pred HHHHHHHh
Q 029791 161 PLAKVIHD 168 (188)
Q Consensus 161 p~l~~l~~ 168 (188)
-+|+...+
T Consensus 294 e~l~f~~~ 301 (339)
T COG1064 294 EALDFAAE 301 (339)
T ss_pred HHHHHHHh
Confidence 55555444
No 276
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.06 E-value=34 Score=27.68 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.||.|+|-|.+|..-++.+.+.+ ..++.|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 58999999999999999888764 5655553
No 277
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.81 E-value=25 Score=32.11 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||.|+|+|+.|+.+++.+...+ .++. +.|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLR-VADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEE-EEcC
Confidence 48999999999999889888765 6655 4554
No 278
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=75.64 E-value=3.9 Score=36.94 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+||||+|+|.+|..++..+.+ ++++++++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~--~~~V~g~D 35 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK--SRQVVGFD 35 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc--CCEEEEEe
Confidence 4799999999999999988655 38887765
No 279
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.55 E-value=15 Score=34.69 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=25.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..|.|.| .|.||+.+++.+.+. +.+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeC
Confidence 4688999 699999999998876 477777643
No 280
>PRK08219 short chain dehydrogenase; Provisional
Probab=75.44 E-value=5.1 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.2
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
||++++-|.| .|.+|+.+++.+.+. .+++++.-
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 5556899999 799999999998876 66666653
No 281
>PRK06545 prephenate dehydrogenase; Validated
Probab=75.42 E-value=4.1 Score=35.74 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEccChHHHHHHHHHHcCC
Q 029791 5 KIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~ 26 (188)
||+|+|+|.||..+++.+....
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 7999999999999999998664
No 282
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.09 E-value=5.8 Score=34.59 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||||+|.|.||+.++..+... +++++ +.|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~-l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVV-AWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 5899999999999999888765 57755 4565
No 283
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=75.04 E-value=8.6 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.8
Q ss_pred cEEEEEccChHHHHHHHHHHcC
Q 029791 4 VKIGINGFGRIGRLVARVILQR 25 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~ 25 (188)
.+++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999988765
No 284
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=75.02 E-value=3.6 Score=37.77 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+||++|+|++|+.+++++.+.+ ++++..|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~d 29 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYN 29 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEe
Confidence 4899999999999999998774 7766554
No 285
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.98 E-value=9.1 Score=33.81 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=54.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEE--EEEee
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV--TVFGV 81 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i--~v~~~ 81 (188)
-.++|.|+|-+|..+++-+....--+|++|. . +.+.. ++....| .-+ .+|-+.. .+ +|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvD-i--N~~Kf----~~ak~fG-----aTe-------~iNp~d~~~~i-~e 253 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVD-I--NPDKF----EKAKEFG-----ATE-------FINPKDLKKPI-QE 253 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEe-c--CHHHH----HHHHhcC-----cce-------ecChhhccccH-HH
Confidence 3589999999999998888777778888884 3 23332 1111111 111 1221100 11 11
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCC-CcEEEE
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGG-AKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~G-akkvii 123 (188)
. . .+-.+.|+||-|||+|.-.++..|-.....| =+-|+|
T Consensus 254 v-i--~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 254 V-I--IEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred H-H--HHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 1 0 1112359999999999887776655444444 223555
No 286
>PTZ00325 malate dehydrogenase; Provisional
Probab=74.96 E-value=5.8 Score=34.60 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=71.4
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+.||+|+|. |+||..++..+...+...-+.+.|.. .++-. . -|--| ... ...+...
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~-~~~g~--a--~Dl~~------------~~~------~~~v~~~ 64 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV-GAPGV--A--ADLSH------------IDT------PAKVTGY 64 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC-CCccc--c--cchhh------------cCc------CceEEEe
Confidence 469999997 99999998888755433333333331 00000 0 01101 000 0112122
Q ss_pred cCC----CCCCcccCCccEEEeecCcccCH-----H-----------hHHHHHhCCCcEEEE--eCCCCCCCeEEee---
Q 029791 82 RNP----EEIPWAETGAEYVVESTGVFTDK-----D-----------KAAAHLKGGAKKVII--SAPSKDAPMFVVG--- 136 (188)
Q Consensus 82 ~~p----~~~~w~~~~vdiV~e~tg~~~~~-----~-----------~~~~h~~~Gakkvii--s~ps~d~p~~V~g--- 136 (188)
.|+ +.+ .+.|+|+-+.|.-... + -.+.-.+.|.+++|+ |+| .|.-+-+..
T Consensus 65 td~~~~~~~l----~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP-vdv~~~~~~~~~ 139 (321)
T PTZ00325 65 ADGELWEKAL----RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP-VNSTVPIAAETL 139 (321)
T ss_pred cCCCchHHHh----CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc-HHHHHHHHHhhh
Confidence 222 223 3899999999985441 1 112223467776555 333 231111110
Q ss_pred cCccCCCCCCceEEcCChhhHhHHHHHHHHHhhcCceE
Q 029791 137 VNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (188)
Q Consensus 137 vN~~~~~~~~~iis~~sCtT~~lap~l~~l~~~~gI~~ 174 (188)
-....+ +..+++..+ +-=-+++-..|.+.+++.-
T Consensus 140 ~~~sg~-p~~~viG~g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 140 KKAGVY-DPRKLFGVT---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred hhccCC-Chhheeech---hHHHHHHHHHHHHHhCcCh
Confidence 011122 246788662 4677889999999999874
No 287
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.71 E-value=22 Score=32.15 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||+|.|+|+.|+.+++.+.... .++ .+.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence 58999999999999999888765 554 44564
No 288
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=74.69 E-value=5.3 Score=36.17 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.|+-|+|.|-+|+++++.+.+.+--+++-+|-
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 57999999999999999999875344444443
No 289
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.39 E-value=15 Score=34.28 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=23.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-|+.|+|+|++|...++.+.... .. |-+.|.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~-V~v~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AI-VRAFDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CE-EEEEeC
Confidence 58999999999999988887664 45 444455
No 290
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.33 E-value=44 Score=28.71 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=22.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaIn 34 (188)
-+|.|.|.|.+|...++.+... +.+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA-GASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEc
Confidence 4789999999999988877665 464 66653
No 291
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=74.32 E-value=5.7 Score=36.51 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~-~~~ivaIn 34 (188)
|||+|+|.|.+|-.++-.+.+.. +++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 59999999999998877777653 68888884
No 292
>PLN02427 UDP-apiose/xylose synthase
Probab=74.32 E-value=5.8 Score=34.61 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+||-|.| .|.||+.+++.|.+.++.+++++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 36899999 7999999999998875578888864
No 293
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.19 E-value=25 Score=31.48 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=50.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC-ceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEE-ee
Q 029791 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF-GV 81 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~-~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~-~~ 81 (188)
.||.|+|+|..|+..++.+....+ .++. +.|....+.....| ++| + +++ ..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l-----------------~~g--~-------~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQL-----------------PED--V-------ELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHh-----------------hcC--C-------EEEeCC
Confidence 579999999999999998887644 6554 56642111100011 011 1 121 11
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
.++++++ +.|+|+-+.|.-.+.+......+.|.+
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi~ 94 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGIP 94 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 3455443 578999998886666555555666763
No 294
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.09 E-value=22 Score=31.14 Aligned_cols=133 Identities=10% Similarity=0.116 Sum_probs=66.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|.|.|.+|...++.+... +.+++++... +.+....+-+ +|- ...++.+.. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~--~~~~~~~a~~----lGa------------~~~i~~~~~-----~~ 235 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRS--SEKEREAIDR----LGA------------DSFLVTTDS-----QK 235 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCC--hHHhHHHHHh----CCC------------cEEEcCcCH-----HH
Confidence 3688999999999988877766 4677776542 1111111111 110 011221100 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CCCCCCceEEcCChhhHhHHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~-~~~~~~~iis~~sCtT~~lap~ 162 (188)
..+. . .++|+||||+|.-.+.+.+-..++.|-+-+.+..+..+.+ ++.. .+.....+...-.++...+..+
T Consensus 236 v~~~--~-~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~~ 307 (375)
T PLN02178 236 MKEA--V-GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLD-----LPIFPLVLGRKMVGGSQIGGMKETQEM 307 (375)
T ss_pred HHHh--h-CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCc-----cCHHHHHhCCeEEEEeCccCHHHHHHH
Confidence 0011 1 1689999999975455555566666664444433322111 1111 1112334444444455566777
Q ss_pred HHHHHh
Q 029791 163 AKVIHD 168 (188)
Q Consensus 163 l~~l~~ 168 (188)
++.+.+
T Consensus 308 ~~l~~~ 313 (375)
T PLN02178 308 LEFCAK 313 (375)
T ss_pred HHHHHh
Confidence 777654
No 295
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.75 E-value=6.1 Score=37.46 Aligned_cols=36 Identities=31% Similarity=0.688 Sum_probs=28.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhh
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~ 43 (188)
.+|-|.|+||+|+.++|.+.+. +.+++.|.. |++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v 436 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDH---DPDHI 436 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEEC---CHHHH
Confidence 4788999999999999998876 478888843 44544
No 296
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=73.68 E-value=29 Score=29.95 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=70.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-++.|+|.|.+|...++.+... +.+++++.+. .+....+++ .+|- . -.++... +..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~---~~~~~~~~~---~~Ga-~-----------~~i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVISSS---DKKREEALE---HLGA-D-----------DYLVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCC---HHHHHHHHH---hcCC-c-----------EEecCCC-----hHH
Confidence 3688999999999988877665 4677776543 222222221 0121 0 0111000 000
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CCCCCCceEEcCChhhHhHHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~-~~~~~~~iis~~sCtT~~lap~ 162 (188)
..... .++|+||||+|...+.+.+-..++.|.+-+.+..++... .++.. .+.....+..+..++..-+..+
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 309 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPL-----QFVTPMLMLGRKVITGSFIGSMKETEEM 309 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCC-----cccHHHHhhCCcEEEEEecCCHHHHHHH
Confidence 01111 268999999996555566666777776544443332211 12221 1222344555544554456667
Q ss_pred HHHHHhhcCceE
Q 029791 163 AKVIHDKFGIVE 174 (188)
Q Consensus 163 l~~l~~~~gI~~ 174 (188)
++.+.+. .++.
T Consensus 310 ~~~~~~g-~l~~ 320 (357)
T PLN02514 310 LEFCKEK-GLTS 320 (357)
T ss_pred HHHHHhC-CCcC
Confidence 7766554 4543
No 297
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=73.65 E-value=8.2 Score=34.68 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=62.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhhhhh-cccccCcCCCcceEEeCCC---eeE--EC--C
Q 029791 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TLL--FG--E 73 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~l~~-yDS~~g~~~~~~v~~~~~~---~l~--i~--g 73 (188)
.||.|.| +|-||...++.+...| .|+++++.--. +.+.+....+ |.. ..+...+.+ .+. .. |
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~-n~~~L~~q~~~f~p-------~~v~i~d~~~~~~l~~~l~~~~ 73 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGK-NVALMVEQILEFRP-------KFVAIDDEASLKDLKTMLQQQG 73 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHHHcCC-------CEEEEcCHHHHHHHHHHhhcCC
Confidence 5999999 8999999999887654 59999997642 5554444332 211 111111110 000 01 2
Q ss_pred EEEEEEeecC-CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeC
Q 029791 74 KPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (188)
Q Consensus 74 ~~i~v~~~~~-p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ 125 (188)
..++++...+ ..++- ....+|+|+-+.-.+....-.-..+++| |++-+.+
T Consensus 74 ~~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 74 SRTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 1233433221 11110 1126899999888777777666778888 4455543
No 298
>PRK08655 prephenate dehydrogenase; Provisional
Probab=73.32 E-value=5.9 Score=35.92 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=23.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|||+|+| +|.+|+.+++.+.+.+ .+++..+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 3899998 9999999999988764 5655543
No 299
>PRK10083 putative oxidoreductase; Provisional
Probab=73.05 E-value=19 Score=30.34 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=50.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|+|.|.+|...++.+...-+...+.+.+. +.+.+..+.++ |. . ..++-+.-.+ . +.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~----Ga-~-----------~~i~~~~~~~-~-~~ 221 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKES----GA-D-----------WVINNAQEPL-G-EA 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHh----CC-c-----------EEecCccccH-H-HH
Confidence 378999999999988876654224655555554 33444333221 11 0 1111110000 0 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEe
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis 124 (188)
..... .++|+||||+|.-.+...+..+++.|-+-+.+.
T Consensus 222 ~~~~g---~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 222 LEEKG---IKPTLIIDAACHPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred HhcCC---CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 11111 246799999995444555667777766444443
No 300
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=73.00 E-value=4.5 Score=36.14 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=21.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
..+|||+|||-+|+..++.+...+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 479999999999999999887664
No 301
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=72.95 E-value=16 Score=33.14 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=52.5
Q ss_pred ccEEEEEcc----ChHHHHHHHHHHcCCC-ceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEE
Q 029791 3 KVKIGINGF----GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (188)
Q Consensus 3 ~~kvgI~G~----GriGr~~~r~~~~~~~-~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~ 77 (188)
..+|+|+|. |.+|+.+++.+.+.+. -++..||-- ++.++ |.+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~------------~~~i~-------------------G~~-- 53 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK------------AGEIL-------------------GVK-- 53 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC------------CCccC-------------------Ccc--
Confidence 357999997 8899999999987641 266666531 11111 111
Q ss_pred EEeecCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 78 v~~~~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
++ ++.+++| ..+|+++-+++.....+..+...+.|+|.++|
T Consensus 54 ~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 AY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 10 2223333 25788888888777777777777788887655
No 302
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=72.61 E-value=2.1 Score=40.84 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..||.|+|.|-+|-.+++.|...+ +.=+.+.|
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G-Vg~ItlVD 369 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG-VRHITFVD 369 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 369999999999999999998764 54444544
No 303
>PLN02740 Alcohol dehydrogenase-like
Probab=72.42 E-value=11 Score=32.94 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=23.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
-+|.|.|.|.+|...++.+.... . +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 37899999999999888777664 6 466653
No 304
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.26 E-value=6.1 Score=35.89 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|+|.|+|.||+.+++.+.... ++++. .|.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV-~d~ 243 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIV-TEV 243 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEE-EcC
Confidence 58999999999999999887664 66544 443
No 305
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=72.21 E-value=8.8 Score=28.47 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=52.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC-CCchhhhhhhhhccc-ccCcCCCcceEEeCCCee-EEC-CEEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYDS-VHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~-~~~~~~~~~l~~yDS-~~g~~~~~~v~~~~~~~l-~i~-g~~i~v 78 (188)
..||.|.|.|.+|..+++.|...+ +.-+.+.|. ..+++.+..-+-|.+ .-|+.. .+.-. + .| .+| +-.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~K-a~~~~-~--~l~~~np~~~v~~ 76 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNK-AEAAK-E--RLQEINPDVEVEA 76 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBH-HHHHH-H--HHHHHSTTSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHH-HHHHH-H--HHHHhcCceeeee
Confidence 369999999999999999997654 544445454 334555444222222 124432 21110 0 01 111 222333
Q ss_pred EeecC-CCCCCccc-CCccEEEeecCcccCHHhHHHHH
Q 029791 79 FGVRN-PEEIPWAE-TGAEYVVESTGVFTDKDKAAAHL 114 (188)
Q Consensus 79 ~~~~~-p~~~~w~~-~~vdiV~e~tg~~~~~~~~~~h~ 114 (188)
+...- .+++ +.. .+.|+||+|+..+..+.......
T Consensus 77 ~~~~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 77 IPEKIDEENI-EELLKDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp EESHCSHHHH-HHHHHTSSEEEEESSSHHHHHHHHHHH
T ss_pred eecccccccc-cccccCCCEEEEecCCHHHHHHHHHHH
Confidence 22211 1111 111 27899999999876665544333
No 306
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=72.14 E-value=29 Score=29.20 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=23.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++.|.|.|.+||.+++++...+-.+++.+|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 4799999999999999999876423444444
No 307
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=71.72 E-value=8.4 Score=34.57 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~ 26 (188)
.+||+|+|. |++|..++..+...+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 479999998 999999998887654
No 308
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.65 E-value=7.3 Score=36.18 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=25.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-++-|.|+||+||.++|.+.+.+ .+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 46789999999999999998764 78787754
No 309
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=71.59 E-value=6.7 Score=35.27 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|+|+|+|.+|+.+++.+...+-.+++.++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~ 211 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIAN 211 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999999998875424454444
No 310
>PRK06988 putative formyltransferase; Provisional
Probab=71.45 E-value=6.9 Score=33.86 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|| +||.+.|.+.+|...++.+.+. ++++++|--
T Consensus 1 ~~-mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt 33 (312)
T PRK06988 1 MK-PRAVVFAYHNVGVRCLQVLLAR-GVDVALVVT 33 (312)
T ss_pred CC-cEEEEEeCcHHHHHHHHHHHhC-CCCEEEEEc
Confidence 64 7999999999999999999876 477776643
No 311
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.28 E-value=28 Score=31.21 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=23.7
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-|.|+|+|.+|+.++|.+.+.. .++ .+.|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v-~~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPF-AVMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeE-EEEeC
Confidence 5899999999999888888764 664 45664
No 312
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=71.28 E-value=5.6 Score=35.22 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|||.+.|.|.+||.++-.++...+.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 4899999999999776666655568877775
No 313
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=71.26 E-value=12 Score=31.94 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=76.5
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
..|||+.| -|..|+.+.+.+...|.+|+..+......-..| + +-++ .++..++ |...+ +.-..+
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl----~-~ytk-----~eiqy~~---lst~D--~~klee 83 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKL----E-VYTK-----LEIQYAD---LSTVD--AVKLEE 83 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcc----c-Ccch-----hheeecc---cchhh--HHHhhc
Confidence 37999999 599999999999999999988887531111111 0 1111 2233211 21111 001111
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCC--CCC--eEEee---cCcc-CCCCCCceEEcCC
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAP--MFVVG---VNEN-EYKPELNIVSNAS 153 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~--d~p--~~V~g---vN~~-~~~~~~~iis~~s 153 (188)
| .-+|..+.+-+...-+.....-..+--|-++|+-+.+ -.| -.++| .|+. ++. ..+.|+||.
T Consensus 84 --~-------~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPG 153 (340)
T KOG4354|consen 84 --P-------HAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPG 153 (340)
T ss_pred --C-------CceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCC
Confidence 1 2356666666655445444433333334457754422 144 56655 4533 333 356899999
Q ss_pred hhhHh----HHHHHHHHH
Q 029791 154 CTTNC----LAPLAKVIH 167 (188)
Q Consensus 154 CtT~~----lap~l~~l~ 167 (188)
|-.+. |.|++|.+.
T Consensus 154 CYaTgsQl~l~Pllk~i~ 171 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAIL 171 (340)
T ss_pred cccccCcccchHHHHHhc
Confidence 96654 677777764
No 314
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=70.95 E-value=7.1 Score=32.80 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=23.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|||+|+|.|.+|..++..+.+.+ .+++.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999988887653 4554443
No 315
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.88 E-value=7.9 Score=33.59 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=23.7
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
+||+|+|. |.+|..++..+...+-..-+.+.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 49999998 9999999888876653333334443
No 316
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=69.80 E-value=24 Score=29.76 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEc-cChHHHHHHHHHHcCCCceEEEEecC
Q 029791 8 ING-FGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 8 I~G-~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|-| .|.+|+.+++.|+++++..-|.+-|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 455 89999999999998875333344444
No 317
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=69.51 E-value=7.5 Score=34.73 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=32.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEecCCCchhhhhh
Q 029791 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTY 45 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~-~~~ivaInd~~~~~~~~~~ 45 (188)
.|+.|.| +|-||...++.+.+.| .|+++++.--. ..+.+.-
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~-n~~~l~~ 44 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGK-NVELLAE 44 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCC-cHHHHHH
Confidence 5999999 8999999999998776 48999998653 4554443
No 318
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=69.50 E-value=25 Score=30.24 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=50.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 81 (188)
+-||-|.| .|.+|+.+++.+.+.+.-.+..||-.. . |+. +.|.+ . -
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~-~---------~~~-------------------v~G~~--~--y 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGK-G---------GTT-------------------VLGLP--V--F 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCC-C---------CCe-------------------EeCee--c--c
Confidence 46899999 799999999999875422333454210 0 011 11111 1 1
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
++.+++|-.. ++|+++-+++.....+..+...++|+|.+||
T Consensus 55 ~sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 NTVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CCHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 2233333100 2788888888776667777777788876544
No 319
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=69.46 E-value=23 Score=31.31 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=24.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-+|.|.|.|.+|...++.+... +.+++.+.|.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL-GAAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence 3688899999999988877665 4665556665
No 320
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.16 E-value=4.6 Score=32.52 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++++... ++.-+.+.|.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~ 51 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDH 51 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEEC
Confidence 36899999999999999999765 4654555553
No 321
>PRK07340 ornithine cyclodeaminase; Validated
Probab=68.93 E-value=11 Score=32.33 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=27.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+++|+|+|.+|+.+++++.....++-+.|.+.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r 158 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR 158 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 589999999999999999875434677778776
No 322
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=68.79 E-value=7.4 Score=33.86 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=26.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
|+..||||+|.|.+|+-++..+.. .+++++ +.|++
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~-l~D~~ 35 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVV-LKDIS 35 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceE-EEeCC
Confidence 445799999999999999887776 456644 44553
No 323
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=68.78 E-value=11 Score=32.48 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=25.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
+||+|+|.|.+|..++..+...+..+ |.+.|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCC
Confidence 59999999999999998887764336 5555553
No 324
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=68.70 E-value=15 Score=32.15 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=27.0
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
+|-|-| .|.||....+.|++. +.++|.+.+.+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~ 34 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLS 34 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-CCeEEEEecCC
Confidence 678888 899999999999886 58888887764
No 325
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=68.68 E-value=9.4 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.7
Q ss_pred CccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 2 ~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+++||-|.| .|.||+.+++.+.+++ .+++++..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 347999999 7999999999998874 78888854
No 326
>PRK08328 hypothetical protein; Provisional
Probab=68.65 E-value=8.9 Score=31.60 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++.+...+ +.-+.+.|.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDE 59 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 368999999999999999887653 544445554
No 327
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.41 E-value=47 Score=26.94 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=48.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-++.|.|.|.+|+..++.+.... .+ ++++.. +.+.+..+-++ |... . + ++.+.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~---~~~~~~~~~~~----g~~~---------~-~-~~~~~------- 152 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDP---DAARRELAEAL----GPAD---------P-V-AADTA------- 152 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCcEEEECC---CHHHHHHHHHc----CCCc---------c-c-cccch-------
Confidence 36889999999998888776653 66 666643 23333222221 2101 0 1 11000
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
.. +...++|++|+|+|.....+....+++.+.+
T Consensus 153 --~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~ 185 (277)
T cd08255 153 --DE--IGGRGADVVIEASGSPSALETALRLLRDRGR 185 (277)
T ss_pred --hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcE
Confidence 00 1224799999998865455556667776654
No 328
>PRK06153 hypothetical protein; Provisional
Probab=68.00 E-value=3.3 Score=37.21 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
.||+|+|+|=+|-.++..|...+=-+++-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999887652344444
No 329
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=67.99 E-value=4.7 Score=33.64 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.2
Q ss_pred EEEEcc-ChHHHHHHHHHHcCC
Q 029791 6 IGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 6 vgI~G~-GriGr~~~r~~~~~~ 26 (188)
|+|+|. |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689999 999999999887665
No 330
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.84 E-value=12 Score=27.91 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=51.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
.|+.|+|.|-+||.+++.+...+ ++ +.-+|- +.+....|.+. | .+..+.+....
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR---t~~ra~~l~~~------~---------------~~~~~~~~~~~ 67 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR---TPERAEALAEE------F---------------GGVNIEAIPLE 67 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES---SHHHHHHHHHH------H---------------TGCSEEEEEGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC---CHHHHHHHHHH------c---------------CccccceeeHH
Confidence 68999999999999999998874 55 555553 23333222210 0 00111111111
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc--EEEEeCC
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK--KVIISAP 126 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak--kviis~p 126 (188)
+.. -...++|+||.||+..... --+.+++.+-+ +++++-.
T Consensus 68 ~~~---~~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 68 DLE---EALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp GHC---HHHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES-
T ss_pred HHH---HHHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceeccc
Confidence 111 1113689999999987553 22345555443 4788763
No 331
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=67.68 E-value=16 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd 35 (188)
-+|.|.|.|.+|...++.+...+ . +++++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 37899999999999888776654 5 5666643
No 332
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=67.02 E-value=2.8 Score=37.44 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=25.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..++..|...+ +.-+.+.|.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G-vg~i~lvD~ 74 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG-VGTLGIVEF 74 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECC
Confidence 468999999999999999887653 554555554
No 333
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=67.00 E-value=60 Score=27.43 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=48.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-++.|.|.|.+|+..++.+... +.+++.+... .+...++.++ | . + ..++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~---~~~~~~~~~~----g--~---------~-~vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRS---PSKKEDALKL----G--A---------D-EFIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCC---HHHHHHHHHc----C--C---------c-EEecCcchhh-----
Confidence 3688889999999887776655 4676666442 2333222211 1 0 0 1111110000
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
...+ ..++|+|++|+|.-...+.+..+++.+.+
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~ 258 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGGT 258 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCCE
Confidence 0111 23799999999976545666677776653
No 334
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=66.90 E-value=38 Score=33.07 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=25.5
Q ss_pred CCc-cEEEEEccChHHHHH-HHHHHcCCCceEEEEecC
Q 029791 1 MGK-VKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~-~kvgI~G~GriGr~~-~r~~~~~~~~~ivaInd~ 36 (188)
||+ .+|.|+|.|..|+.. ++.+.+. +.++. ++|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~-G~~V~-~sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDR-GYSVS-GSDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHC-CCeEE-EECC
Confidence 554 469999999999987 7877766 46654 5665
No 335
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.85 E-value=23 Score=30.11 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceE-EEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVEL-VAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~i-vaI 33 (188)
-+|.|.|.|.+|...++.+... +.+. +++
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~ 191 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAI 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 3789999999999988877665 4664 444
No 336
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.49 E-value=6.9 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=23.2
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEE
Q 029791 2 GKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (188)
Q Consensus 2 ~~~kvgI~G~GriGr~~~r~~~~~~~~~iva 32 (188)
+..+|+|+|+|..|-..+|.+.+. +++++.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~v 34 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE-GHEVVV 34 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC-CCCceE
Confidence 457999999999999999988754 344433
No 337
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=66.34 E-value=39 Score=28.21 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=24.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++.|.|.|.+|+.+++.+.+.+ .++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~ 147 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIAN 147 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999988764 5665554
No 338
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=65.94 E-value=9.8 Score=32.76 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=25.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+|||.+|+|.+|..+++.+.+.. +++..-|-
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r 31 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNR 31 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeC
Confidence 38999999999999999999874 77665553
No 339
>PLN00106 malate dehydrogenase
Probab=65.77 E-value=11 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=24.6
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||+|+|. |++|..++..+..++-..-+.+-|.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 369999998 9999999998876654433334443
No 340
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=65.59 E-value=11 Score=32.32 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+||+|+|.|-||..+.-.+... +.+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~ 32 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVRLIL 32 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeEEEE
Confidence 47999999999999887777654 34554443
No 341
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=65.50 E-value=10 Score=35.12 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||||+|.|.+|+.+++.+... +++++.. |.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~l~-d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVLLY-DI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEEEE-eC
Confidence 5899999999999999988766 4776654 44
No 342
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=65.33 E-value=12 Score=32.07 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=23.2
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|+|+|.|.+|..++..+...+-..-+.+.|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5899999999999888877654444455555
No 343
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=65.32 E-value=12 Score=32.91 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+|||+|-|..||.+++++... +++++.+.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l-G~~v~~~d 32 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL-GYKVIVLD 32 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEe
Confidence 5899999999999999888776 48877664
No 344
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=64.48 E-value=12 Score=33.22 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.||.|+|+|++|+..++.+...+ .+++.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999888664 6755553
No 345
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=64.46 E-value=39 Score=29.42 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=30.5
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC-CCCCCeEEeecC
Q 029791 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDAPMFVVGVN 138 (188)
Q Consensus 93 ~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p-s~d~p~~V~gvN 138 (188)
..|++|..+..-...+-.+.|++-|| +|+++. ++|+.+-|..+|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~ 274 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVG 274 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCC
Confidence 34666666655566677899999999 899986 456545555555
No 346
>PLN02240 UDP-glucose 4-epimerase
Probab=64.36 E-value=13 Score=31.66 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=26.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..||-|.| .|.+|+.+++.+.+.+ .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 46899999 7999999999998764 78888753
No 347
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=64.33 E-value=12 Score=33.41 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++-|.|+|++|+.+++.+.+. +.+++.|.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid 261 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE-GYSVKLIE 261 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 6899999999999999988765 47777774
No 348
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=64.30 E-value=16 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=25.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..||.|.|.|++|+..++.+...+ .+++...+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 379999999999999999888775 88777754
No 349
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=64.30 E-value=53 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=22.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
-+|.|.|.|.+|...++.+.... . .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 47899999999999888776654 6 466554
No 350
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=64.19 E-value=30 Score=29.24 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=52.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
+|-|.|.|.+|....+.+... +.+++++... .+.+..+-++ |- + -.++.+.-.+. +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~---~~~~~~~~~~----g~-----------~-~~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM-GFRTVAISRG---SDKADLARKL----GA-----------H-HYIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCC---hHHHHHHHHc----CC-----------c-EEecCCCccHH--HHH
Confidence 688999999999988877766 4677777543 2333333221 10 0 11221110000 001
Q ss_pred CCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEe
Q 029791 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis 124 (188)
. .| .++|++++|+|.-...+.+..++..+.+-+.+.
T Consensus 224 ~--~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 224 Q--EL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred H--hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 1 12 268999999875555666667777666434343
No 351
>PRK07411 hypothetical protein; Validated
Probab=63.98 E-value=4.1 Score=36.34 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=26.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|+|-+|-.+++.|... ++.-+.+.|.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gvg~l~lvD~ 70 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GIGRIGIVDF 70 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCEEEEECC
Confidence 36899999999999999988765 3655566664
No 352
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=63.60 E-value=97 Score=26.68 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
+||.|+|.|.+|-.+...|...+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 49999999999999888887665
No 353
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=63.60 E-value=10 Score=29.93 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=44.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.++.|.|||.+||-+++.+.... .. |.|.|. ||-. ++| .. .+| +.+ .-+.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~--DPi~---alq----------A~---~dG--f~v-----~~~~~-- 74 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI--DPIR---ALQ----------AA---MDG--FEV-----MTLEE-- 74 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S--SHHH---HHH----------HH---HTT---EE-----E-HHH--
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC--ChHH---HHH----------hh---hcC--cEe-----cCHHH--
Confidence 58999999999999999998764 33 345554 3322 121 00 022 111 10111
Q ss_pred CCCCCcccCCccEEEeecCcc--cCHHhHHHHHhCCCcEEEEeCCCC
Q 029791 84 PEEIPWAETGAEYVVESTGVF--TDKDKAAAHLKGGAKKVIISAPSK 128 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~--~~~~~~~~h~~~Gakkviis~ps~ 128 (188)
-++ ..|+++-+||.- ++.+..+ .++.|| ++.+..+.
T Consensus 75 --a~~----~adi~vtaTG~~~vi~~e~~~-~mkdga--il~n~Gh~ 112 (162)
T PF00670_consen 75 --ALR----DADIFVTATGNKDVITGEHFR-QMKDGA--ILANAGHF 112 (162)
T ss_dssp --HTT----T-SEEEE-SSSSSSB-HHHHH-HS-TTE--EEEESSSS
T ss_pred --HHh----hCCEEEECCCCccccCHHHHH-HhcCCe--EEeccCcC
Confidence 122 569999999964 3445443 567788 66666553
No 354
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=63.54 E-value=21 Score=30.79 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=48.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
-+|.|+|.|.+|...++.+...+ .+.+.+.+. +.+....+-++ |. . ..++.+...+ . ..
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~--~~~k~~~~~~~----g~-~-----------~~i~~~~~~~-~-~~ 246 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDI--VDSRLELAKEL----GA-T-----------HVINPKEEDL-V-AA 246 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC--CHHHHHHHHHc----CC-c-----------EEecCCCcCH-H-HH
Confidence 36899999999998877776654 643333333 22333222111 10 0 1111110000 0 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcE
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakk 120 (188)
..++. ..++|+|+||+|.-...+.+..+++.+.+-
T Consensus 247 v~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 281 (365)
T cd08278 247 IREIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTL 281 (365)
T ss_pred HHHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEE
Confidence 11111 247999999998644456667777776643
No 355
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=63.32 E-value=3.8 Score=29.68 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCcc-CCCCCCceEEcCChhhHhHHHHHHH
Q 029791 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLAKV 165 (188)
Q Consensus 92 ~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~~-~~~~~~~iis~~sCtT~~lap~l~~ 165 (188)
.++|+||||+|.....+.+-..++.|.+-+++..++.+ + + .+|.. .+..+..+...-.++..-.--+++.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~-~-~--~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 127 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGD-P-I--SFNLMNLMFKEITIRGSWGGSPEDFQEALQL 127 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTS-E-E--EEEHHHHHHTTEEEEEESSGGHHHHHHHHHH
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCC-C-C--CCCHHHHHhCCcEEEEEccCCHHHHHHHHHH
Confidence 47999999999766667777777777765666555411 1 1 11111 2222455666666664444434333
No 356
>PLN02827 Alcohol dehydrogenase-like
Probab=63.17 E-value=26 Score=30.68 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaI 33 (188)
-+|.|.|.|.+|...++.+.... +. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37889999999999888776654 64 4444
No 357
>PRK15076 alpha-galactosidase; Provisional
Probab=63.00 E-value=11 Score=34.19 Aligned_cols=14 Identities=29% Similarity=0.116 Sum_probs=12.1
Q ss_pred cEEEEEccChHHHH
Q 029791 4 VKIGINGFGRIGRL 17 (188)
Q Consensus 4 ~kvgI~G~GriGr~ 17 (188)
+||+|+|.|.+|-.
T Consensus 2 ~KIaIIGaGsvg~~ 15 (431)
T PRK15076 2 PKITFIGAGSTVFT 15 (431)
T ss_pred cEEEEECCCHHHhH
Confidence 59999999999843
No 358
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=62.88 E-value=15 Score=31.96 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.7
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGF-GRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~~ 26 (188)
..||+|.|. |.+|..+++.+...+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCc
Confidence 379999997 999999999887654
No 359
>PRK07236 hypothetical protein; Provisional
Probab=62.57 E-value=13 Score=32.34 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=24.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
|+..+|.|+|-|..|-..+..|... +++++-+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~ 35 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVF 35 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 5568999999999999888877654 4555444
No 360
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=62.51 E-value=13 Score=35.71 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~-~~~ivaInd~ 36 (188)
.||+|+|+|.+|+.+++.+.... ..+++++ |+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~-d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAV-DR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEE-EC
Confidence 58999999999999999988654 2355544 54
No 361
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.27 E-value=50 Score=29.39 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.++.|.|.|++|+..++.+.+.+ .+++. .|.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTV-NDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEE-EcC
Confidence 57999999999999999888764 66544 454
No 362
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=61.99 E-value=21 Score=28.12 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.5
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..++-|.| .|.+|+.+++.+.+.+ .+++.+.-
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 36899999 7999999999998774 66666653
No 363
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=61.73 E-value=14 Score=33.21 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=24.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|+|+|.|.+|+.+++.+...+ ++-+.+.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 58999999999999999887653 533344444
No 364
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=61.23 E-value=22 Score=30.60 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=29.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.++||+|.|..|+.+++++.....++=|-|.+..
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~ 151 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRN 151 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4799999999999999999876668888888873
No 365
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=61.21 E-value=9.9 Score=34.45 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=23.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
.+|||+|+|.||-.++-+...+ +++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 7999999999998776544444 6888887
No 366
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=61.16 E-value=20 Score=32.84 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.1
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcC
Q 029791 3 KVKIGINGF-GRIGRLVARVILQR 25 (188)
Q Consensus 3 ~~kvgI~G~-GriGr~~~r~~~~~ 25 (188)
.+||+|+|. |.+|..++..+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 479999998 99999998888765
No 367
>PRK08223 hypothetical protein; Validated
Probab=61.08 E-value=13 Score=32.09 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=49.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC-CCchhhhhhhhhc-ccccCcCCCcceEEeCCCeeEECC-EEEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~-~~~~~~~~~l~~y-DS~~g~~~~~~v~~~~~~~l~i~g-~~i~v~ 79 (188)
.-||.|+|+|-+|..++..+...+ +.-+.+.|. ..+.+.+..-+-| .+.-|+.. .+... ..-..+|- -.|..+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~K-ve~a~--~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPK-AEVLA--EMVRDINPELEIRAF 102 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCCcchhccccccCcChhHCCCcH-HHHHH--HHHHHHCCCCEEEEE
Confidence 368999999999999999887653 544455553 2233333221212 12234432 22111 00011221 123332
Q ss_pred ee-cCCCCCCcccCCccEEEeecCcc
Q 029791 80 GV-RNPEEIPWAETGAEYVVESTGVF 104 (188)
Q Consensus 80 ~~-~~p~~~~w~~~~vdiV~e~tg~~ 104 (188)
.+ -++++++.--.+.|+|+||+..|
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCC
Confidence 22 12333221123789999999876
No 368
>PRK08291 ectoine utilization protein EutC; Validated
Probab=61.05 E-value=21 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=27.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+++|+|.|..|+.+++++....+++-+.|.+.
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999998875445777888776
No 369
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=60.71 E-value=19 Score=26.87 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=23.6
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|+|+|.|.||..++..+.+ .+.++.-+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 6899999999999888876 45776666553
No 370
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=60.51 E-value=32 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=23.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
-+|.|.|.|.+|...++.+.... . +++++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK-ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 37899999999999888776654 5 566663
No 371
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=60.48 E-value=11 Score=34.24 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=29.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|++..||++|+|.+|+.++.++.++ ++.+..-|-.
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~-G~~VavyNRt 35 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADH-GYTVAVYNRT 35 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhc-CceEEEEeCC
Confidence 6678899999999999999888876 4887777754
No 372
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.27 E-value=62 Score=29.14 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHH-HHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~-~~r~~~~~~~~~ivaInd~ 36 (188)
.||.|+|.|..|+. ++|.+.+.+ .++. ++|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V~-~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKVS-GSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeEE-EECC
Confidence 58999999999999 688887764 6654 4564
No 373
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=60.27 E-value=21 Score=30.85 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+++|+|.|..+|.+++++....+++-+.|.+.
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 489999999999999999975445777778776
No 374
>PRK14851 hypothetical protein; Provisional
Probab=60.08 E-value=4.3 Score=39.06 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=48.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC-CCchhhhhhhhhc-ccccCcCCCcceEEeCCCeeEEC-CEEEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFG-EKPVTVF 79 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~-~~~~~~~~~l~~y-DS~~g~~~~~~v~~~~~~~l~i~-g~~i~v~ 79 (188)
..||+|+|+|=+|..++..+...+ +.-..|.|. ..++..+..-+-| .+.-|+.+ .++-. ..-..+| +-.|..+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~K-v~v~~--~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFDQFEPVNVNRQFGARVPSFGRPK-LAVMK--EQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCCEecccccccCcCcChhhCCCHH-HHHHH--HHHHHhCCCCeEEEE
Confidence 368999999999999999887553 433334443 1122222221111 22235443 22211 1001233 2234444
Q ss_pred eec-CCCCCCcccCCccEEEeecCcc
Q 029791 80 GVR-NPEEIPWAETGAEYVVESTGVF 104 (188)
Q Consensus 80 ~~~-~p~~~~w~~~~vdiV~e~tg~~ 104 (188)
.+. ++++++.--.++|+|+||+..|
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCC
Confidence 322 2333321123799999999865
No 375
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=59.51 E-value=5.9 Score=36.51 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=19.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~iv 31 (188)
.+|+|+|+|.+|+..+..+..+ ++.++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-GvnVv 63 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-GLDIS 63 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-cceeE
Confidence 6899999999999665544443 35444
No 376
>PRK05586 biotin carboxylase; Validated
Probab=59.27 E-value=15 Score=33.09 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=27.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.||+|.|-|.+|+.+++++.+. +++++++..
T Consensus 3 kkvli~g~G~~~~~~~~aa~~l-G~~~v~v~~ 33 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREM-GIETVAVYS 33 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-CCcEEEEcC
Confidence 6999999999999999999887 488888844
No 377
>PLN02858 fructose-bisphosphate aldolase
Probab=59.13 E-value=14 Score=38.56 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=25.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+||++|+|.+|..+++.+... ++++.+- |.
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~-G~~V~v~-dr 355 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS-NFSVCGY-DV 355 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC-CCEEEEE-eC
Confidence 6899999999999999999876 4776554 44
No 378
>PLN00203 glutamyl-tRNA reductase
Probab=58.97 E-value=15 Score=34.18 Aligned_cols=31 Identities=23% Similarity=0.605 Sum_probs=24.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
..+|+|+|.|.+|+.+++.+...+ + +++.+|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~n 297 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVN 297 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEe
Confidence 368999999999999999998764 5 444444
No 379
>PLN00198 anthocyanidin reductase; Provisional
Probab=58.77 E-value=19 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=25.9
Q ss_pred CccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
++.+|-|-| .|.||+.+++.+.+.+ .+++++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 347899999 8999999999998764 6776553
No 380
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=58.76 E-value=20 Score=30.18 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=26.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|||-|.| .|.+|+.+.+.+.++ +.++++++-
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence 5999999 799999999888764 588898853
No 381
>PRK06141 ornithine cyclodeaminase; Validated
Probab=58.62 E-value=24 Score=30.34 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|+|+|.|.+|+.+++++.....++-+.|.+.
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999987765323555556555
No 382
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=58.62 E-value=61 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=23.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-+|.|.|.|-+|+.+++.+... +.+++++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM-GFETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3788999988999887777665 477777654
No 383
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=58.61 E-value=21 Score=30.07 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaI 33 (188)
-+|.|.|.|.+|..+++.+.... + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 37889999999999888777664 5 67777
No 384
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=58.37 E-value=47 Score=27.74 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=47.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|+.+++.+...+ .. ++++.. +.+....+-++.. + ..++.+.... ..+
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~---~~~~~~~~~~~g~--------~--------~~~~~~~~~~-~~~ 219 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEP---NEEKLELAKKLGA--------T--------ETVDPSREDP-EAQ 219 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHhCC--------e--------EEecCCCCCH-HHH
Confidence 37889999999999888777653 65 444433 2333333322110 0 1111100000 000
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
...+ ..++|++++|+|.-...+.+..+++.+.+
T Consensus 220 --~~~~--~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 220 --KEDN--PYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred --HHhc--CCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 0011 13699999999854445556677776664
No 385
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=58.05 E-value=47 Score=29.18 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-.+||+|.|..++..++++...-+++=+-|.+.
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r 163 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSR 163 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcC
Confidence 368999999999999999986555777777776
No 386
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=58.02 E-value=37 Score=28.27 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=49.6
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecCC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~p 84 (188)
+|-|+|.|.+|+..++.+... +..++++... .+...++-++.. . -.++.+.... .+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s---~~~~~~~~~~g~-----~-----------~~~~~~~~~~-~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIK---EEKLELAKELGA-----D-----------EVLNSLDDSP-KDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCEEEEEcCC---HHHHHHHHHhCC-----C-----------EEEcCCCcCH-HHH-H
Confidence 688889999999988877665 4777766442 333333322110 0 0111000000 000 0
Q ss_pred CCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcE
Q 029791 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 120 (188)
Q Consensus 85 ~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakk 120 (188)
...+ ..++|+|++|.|.....+.+..+++.|.+-
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~ 259 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRI 259 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 0111 236899999998655556677788877743
No 387
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=57.82 E-value=17 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=23.4
Q ss_pred EEEEEcc-ChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||+|+|. |.+|..++..+...+-..-+.+.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 7999998 9999999888876653333444454
No 388
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=57.57 E-value=19 Score=33.91 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=26.8
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 2 ~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+..||||+|-|..||.+++++.+. +++++.+.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l-G~~Vi~ld 52 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM-GIKVKVLD 52 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 357999999999999999988876 48877773
No 389
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=57.55 E-value=54 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-+|.|.|.|.+|+..++.+.... .+++++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 47899998779999888776654 77776644
No 390
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.43 E-value=1.2e+02 Score=25.71 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=22.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
-+|.|+|.|.+|+..++.+... +. .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA-GASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEEC
Confidence 3689999999999988877765 46 555553
No 391
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.81 E-value=20 Score=30.63 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEE
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~iv 31 (188)
||+|+|.|.+|..++..+.+.. .++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999988887653 4443
No 392
>PRK07326 short chain dehydrogenase; Provisional
Probab=56.44 E-value=23 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.++-|.| .|.+|+.+++.+.+. +.+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 5799999 799999999999876 57877774
No 393
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=56.41 E-value=22 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+||-|.| .|.||+.+++.+.+. +.+++++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhC-CCEEEEEec
Confidence 6899999 699999999998876 477777653
No 394
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=55.75 E-value=44 Score=28.11 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=49.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+|.|.+|..+++.+... +.+ ++++.. +.+...++.++.. . ..++.+.... .+.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~~---s~~~~~~~~~~g~-----~-----------~~~~~~~~~~-~~~ 225 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS-GARKVIVSDL---NEFRLEFAKKLGA-----D-----------YTIDAAEEDL-VEK 225 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC---CHHHHHHHHHhCC-----c-----------EEecCCccCH-HHH
Confidence 3788999999999988866554 577 555533 2333333332221 0 1111110000 000
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEE
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 121 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkv 121 (188)
--+..+. .++|+|++|+|.......+..+++.+.+-+
T Consensus 226 i~~~~~~--~~vd~vld~~~~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 226 VRELTDG--RGADVVIVATGSPEAQAQALELVRKGGRIL 262 (343)
T ss_pred HHHHhCC--cCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 0000111 368999999985434455566777766433
No 395
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=55.66 E-value=39 Score=29.14 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaI 33 (188)
-+|.|+|.|.+|...++.+...+ .. ++++
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~ 214 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAG-ASRIIAV 214 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37889999999999888776664 54 4443
No 396
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.51 E-value=97 Score=26.04 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=66.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
.|.|.|.|.+|..+++.+... +.+ ++++... .+....+-++ |- . -.++.+..... ++
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~-G~~~v~~~~~~---~~~~~~~~~~----ga-~-----------~v~~~~~~~~~--~~ 228 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRL-GAERIIAMSRH---EDRQALAREF----GA-T-----------DIVAERGEEAV--AR 228 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC---HHHHHHHHHc----CC-c-----------eEecCCcccHH--HH
Confidence 678899999999988777665 465 5555432 2222111111 10 0 11211110000 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCCCCCCeEEeecCc-cCCCCCCceEEcCChhhHhHHHH
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNE-NEYKPELNIVSNASCTTNCLAPL 162 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps~d~p~~V~gvN~-~~~~~~~~iis~~sCtT~~lap~ 162 (188)
..++. ...++|++++|+|.-...+.+..+++.+..-+.++.++... .+|. ..+.....+...+.+.-..+..+
T Consensus 229 i~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (345)
T cd08287 229 VRELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGV-----ELDVRELFFRNVGLAGGPAPVRRYLPEL 302 (345)
T ss_pred HHHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCC-----ccCHHHHHhcceEEEEecCCcHHHHHHH
Confidence 00111 11368999999986555666777777665333333332111 1222 22222344555555555666666
Q ss_pred HHHHHh
Q 029791 163 AKVIHD 168 (188)
Q Consensus 163 l~~l~~ 168 (188)
++.+.+
T Consensus 303 ~~~~~~ 308 (345)
T cd08287 303 LDDVLA 308 (345)
T ss_pred HHHHHc
Confidence 666543
No 397
>PRK05086 malate dehydrogenase; Provisional
Probab=55.15 E-value=23 Score=30.60 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.9
Q ss_pred cEEEEEcc-ChHHHHHHHHHHc
Q 029791 4 VKIGINGF-GRIGRLVARVILQ 24 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~ 24 (188)
+||+|+|. |+||+.++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 49999997 9999999887754
No 398
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=54.69 E-value=23 Score=31.90 Aligned_cols=32 Identities=31% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|| .||.|.|-|.++..+++++.+. +++++++.
T Consensus 1 ~~-kkili~g~g~~~~~~~~aa~~l-G~~vv~~~ 32 (449)
T TIGR00514 1 ML-DKILIANRGEIALRILRACKEL-GIKTVAVH 32 (449)
T ss_pred Cc-ceEEEeCCCHHHHHHHHHHHHc-CCeEEEEE
Confidence 54 6999999999999999999887 59999885
No 399
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=54.43 E-value=49 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd 35 (188)
-+|.|.|.|.+|...++.+... +++ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA-GARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC
Confidence 3688999999999988877765 477 666654
No 400
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=54.31 E-value=57 Score=27.08 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=51.2
Q ss_pred EEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+|.|+|. |.+|..+++.+... +++++++... .+..-.+.++ |- . .+++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~---~~~~~~~~~~----g~-~-----------~v~~~~~~~---~~~ 205 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKL-GYEVVASTGK---ADAADYLKKL----GA-K-----------EVIPREELQ---EES 205 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHC-CCeEEEEecC---HHHHHHHHHc----CC-C-----------EEEcchhHH---HHH
Confidence 7889996 99999988877766 4777777543 2233222211 10 0 112111100 000
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEEe
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis 124 (188)
... +...++|+|+||+|. ...+.+..++..+.+-+.+.
T Consensus 206 ~~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 206 IKP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred HHh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 011 122468999999997 45566667777666433333
No 401
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.31 E-value=50 Score=27.94 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=23.7
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-+|.|+|. |.+|...++.+... +.+++++..
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~ 184 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAG 184 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 37889995 99999988877665 477776654
No 402
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=54.19 E-value=25 Score=30.72 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+||.|.| .|.||+.+++.|.+. +.+++++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAE-GHYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhC-CCEEEEEE
Confidence 47999999 699999999999876 47888875
No 403
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=54.15 E-value=40 Score=28.05 Aligned_cols=90 Identities=17% Similarity=0.317 Sum_probs=49.6
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+|-|+| .|.+|...++.+... +.+++++... .+...++.+ +|- . -.++.+.-.+ . ..
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s---~~~~~~l~~----~Ga-~-----------~vi~~~~~~~-~-~~ 203 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGS---DDKVAWLKE----LGF-D-----------AVFNYKTVSL-E-EA 203 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHc-CCEEEEEeCC---HHHHHHHHH----cCC-C-----------EEEeCCCccH-H-HH
Confidence 688999 699999988877765 4787777643 233333322 111 0 0111100000 0 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
.. .+...++|+|+||+|. ...+.+..+++.+.+
T Consensus 204 v~--~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~ 236 (329)
T cd08294 204 LK--EAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGR 236 (329)
T ss_pred HH--HHCCCCcEEEEECCCH-HHHHHHHHhhccCCE
Confidence 00 0112379999999997 445556667776664
No 404
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=53.86 E-value=61 Score=27.16 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-+|.|.|.|.+|..+++.+.......++++..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 36899998889999888777664477777654
No 405
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=53.82 E-value=59 Score=27.39 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.8
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCc-eEEEEec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~-~ivaInd 35 (188)
-+|-|+|. |.+|...++.+... +. +++++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 37899996 99999988877665 46 6777754
No 406
>PLN02702 L-idonate 5-dehydrogenase
Probab=53.60 E-value=49 Score=28.38 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=49.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEee-c
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-R 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~-~ 82 (188)
-+|.|+|.|.+|...++.+... +...+.+.+. +.+.+..+.++ |. . . .+.++.+.-...+. .
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~--~~~~~~~~~~~----g~-~-~--------~~~~~~~~~~~~~~~~ 245 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAF-GAPRIVIVDV--DDERLSVAKQL----GA-D-E--------IVLVSTNIEDVESEVE 245 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECC--CHHHHHHHHHh----CC-C-E--------EEecCcccccHHHHHH
Confidence 3788999999999888777665 4654444454 23333222221 11 0 0 01111100000000 0
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
...+. +. .++|+|+||+|.-...+.+..+++.+.+
T Consensus 246 ~~~~~-~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~ 280 (364)
T PLN02702 246 EIQKA-MG-GGIDVSFDCVGFNKTMSTALEATRAGGK 280 (364)
T ss_pred HHhhh-cC-CCCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 00001 11 2689999999954455667778887764
No 407
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.93 E-value=23 Score=28.55 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=26.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
++|-|.| .|.+|+.+++.|..+ +.++++++-
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEe
Confidence 3788999 899999999999988 577777764
No 408
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.92 E-value=37 Score=22.54 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.7
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
||.|+|-|.+|-.++..+.+.. .+++-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEe
Confidence 6899999999999999887764 5554443
No 409
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=52.88 E-value=21 Score=35.98 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc------eEEEEecCCCchhhhhhhhhc-ccccCcCCCcceEEe-----CCCeeEEC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTYMFKY-DSVHGQWKHHELKVK-----DDKTLLFG 72 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~------~ivaInd~~~~~~~~~~l~~y-DS~~g~~~~~~v~~~-----~~~~l~i~ 72 (188)
||.|+|.|-+|-.+++.+...+ + .++-+.+-..+.+.+-.-|-| ..--|+.. .++-.+ +-+ +.+.
T Consensus 421 kVlvvGaGGlG~e~lknLal~G-v~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~K-a~vaa~~l~~~Np~-v~I~ 497 (1008)
T TIGR01408 421 NIFLVGCGAIGCEMLKNFALMG-VGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPK-SYTAADATLKINPQ-IKID 497 (1008)
T ss_pred cEEEECCChHHHHHHHHHHHhC-CCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHH-HHHHHHHHHHHCCC-CEEE
Q ss_pred CEEEEEEeecCCCCCC---cccCCccEEEeecCcccCHHhHH-HHHhCCCcEEEEeCCCCC----CCeEEeecCccCCCC
Q 029791 73 EKPVTVFGVRNPEEIP---WAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAPSKD----APMFVVGVNENEYKP 144 (188)
Q Consensus 73 g~~i~v~~~~~p~~~~---w~~~~vdiV~e~tg~~~~~~~~~-~h~~~Gakkviis~ps~d----~p~~V~gvN~~~~~~ 144 (188)
-..-++ ......-++ |. +.|+|++|...+.++.+.. ...+.+. .+|.+.... +-+++|+.- +.|..
T Consensus 498 ~~~~~v-~~~~e~i~~~~f~~--~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~t-e~y~~ 571 (1008)
T TIGR01408 498 AHQNRV-GPETETIFNDEFYE--KLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHLT-ESYGS 571 (1008)
T ss_pred EEEeec-ChhhhhhhhHHHhh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCCc-CCCCC
Q ss_pred --CCceEEcCChh
Q 029791 145 --ELNIVSNASCT 155 (188)
Q Consensus 145 --~~~iis~~sCt 155 (188)
...-.+.|.||
T Consensus 572 ~~d~~~~~~P~Ct 584 (1008)
T TIGR01408 572 SRDPPEKEIPFCT 584 (1008)
T ss_pred CCCCCCCCCCccc
No 410
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.59 E-value=1.4e+02 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=22.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaIn 34 (188)
-+|.|+|.|.+|...++.+.... . .++++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG-ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 36899999999999888776654 5 466654
No 411
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.37 E-value=23 Score=31.65 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=22.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|||.|+|+|+.|+.+++.+. . +.+++. .|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~-G~~V~~-~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K-FGGVDI-FD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C-CCeEEE-Ec
Confidence 47999999999999999888 5 466544 44
No 412
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=52.25 E-value=28 Score=30.78 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=26.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+||.|.| .|.||+.+++.+.+. +.+++++.-
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEe
Confidence 36899999 799999999999876 477777753
No 413
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=52.18 E-value=31 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..+|-|+|.|.+|..-++.+.+.+ .+++.+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence 468999999999999999888775 777777653
No 414
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=52.07 E-value=54 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.7
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-+|.|+|. |.+|...++.+... +.+++++..
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~ 191 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAG 191 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEcC
Confidence 36899997 99999988877665 477776643
No 415
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=51.75 E-value=27 Score=29.46 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=25.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|||-|.| .|.||+.+++.+.+. +.+++++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-CCeEEEEec
Confidence 3799999 799999999999876 478887753
No 416
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=51.75 E-value=52 Score=28.07 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd 35 (188)
-+|-|.|.|-+|+..++.+... +. .++++..
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~ 210 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDG 210 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 3688999999999988877765 46 6766643
No 417
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.54 E-value=24 Score=32.58 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceE-EEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVEL-VAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~i-vaInd~~ 37 (188)
.+|+|+|-|.-|-.++..|+..+..+- ++|.++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~ 36 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR 36 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence 699999999999999999987764443 7776653
No 418
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.53 E-value=33 Score=26.96 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+.+|-|.| .|-||+.+++.+.+.+ .+++.+..
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~ 38 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAG-ADVVVHYR 38 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC
Confidence 46899999 7999999999988764 56555443
No 419
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=50.91 E-value=49 Score=27.82 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=22.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-+|.|.|.|.+|...++.+... +.+++.+.+.
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~-G~~~v~~~~~ 194 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR-GVGPIVASDF 194 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC
Confidence 3788999999999887777655 4665555543
No 420
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=50.80 E-value=32 Score=30.10 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=24.6
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCc-eEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd 35 (188)
..||.|+|.|.+|..+++.|... ++ +++-|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 46899999999999999988766 46 4444443
No 421
>PRK14852 hypothetical protein; Provisional
Probab=50.77 E-value=13 Score=37.22 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=24.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..||+|+|+|=+|..++..+...+ +.-+.|.|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG-VG~I~L~D 363 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG-IGNFNLAD 363 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 368999999999999998887553 44444544
No 422
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=50.74 E-value=24 Score=32.91 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=22.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
.||+|+|.|.-|-..++.+.+. +++++..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g~~~~~f 30 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-GLEVTCF 30 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T-EEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCeEE
Confidence 5999999999999999999886 5887766
No 423
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.65 E-value=32 Score=29.23 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~-ivaI 33 (188)
-+|-|.|.|.+|...++.+... +.+ ++++
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~ 197 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR-GAGRIIAV 197 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 4788999999999988877665 464 4444
No 424
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=50.57 E-value=65 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=24.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
-+|.|+|.|.+|+.+++.+... +++++++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL-GARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 3789999999999988877655 578777754
No 425
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=50.53 E-value=19 Score=30.88 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 8 I~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|+|.|.+|..++..+...+-+.-+.+.|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999988876654443444454
No 426
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=50.38 E-value=26 Score=30.46 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRD 26 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~ 26 (188)
++||+|+|.|.+|..++..+.+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999988887664
No 427
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=50.26 E-value=28 Score=31.45 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=26.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+||-|-| .|.||+.+++.|.++ +.+|+++..
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr 152 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDN 152 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence 7999999 799999999999887 478888754
No 428
>PLN02778 3,5-epimerase/4-reductase
Probab=50.12 E-value=45 Score=28.13 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEE
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVA 32 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~iva 32 (188)
++||-|.| .|.||+.+++.+.+.+ .+++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 47999999 7999999999998774 56553
No 429
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=50.02 E-value=50 Score=25.95 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=24.3
Q ss_pred cEEEEEccChH-HHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRI-GRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~Gri-Gr~~~r~~~~~~~~~ivaInd 35 (188)
.||.|+|.|.+ |+.+++.+.+.. .+++.++.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 68999999985 988999888764 56665554
No 430
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=49.77 E-value=28 Score=30.07 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC--CCceEEEEec
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVND 35 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~--~~~~ivaInd 35 (188)
|++.+|.|+|.|..|-..+..|... .++.++-+-.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 7778999999999999887776543 2577666653
No 431
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=49.69 E-value=1.8e+02 Score=25.55 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=38.4
Q ss_pred CCccEEEeecCcccCHHhHHHHHhCCCcEEEEeCCC-CCCCeEEeecCcc-CCCCCCceEEcCChhhHhHHHHHHHHHh
Q 029791 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLAKVIHD 168 (188)
Q Consensus 92 ~~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~ps-~d~p~~V~gvN~~-~~~~~~~iis~~sCtT~~lap~l~~l~~ 168 (188)
.++|+|+||+|...+.+.+-..++.+-+.+++.++. .+.+ ..++.. .+..+..++.....+..-+.-+++.+.+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~---~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~ 331 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFS---APLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAA 331 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCcc---ccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 378999999987656666667777555445554431 1101 012221 2222345555443344445555655543
No 432
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=49.65 E-value=77 Score=26.64 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=22.9
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEec
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd 35 (188)
+|.|+|.|.+|+.+++.+... +.+ ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 788999999999988877655 465 666654
No 433
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=49.21 E-value=25 Score=31.06 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred cEEEEEccChHHHHHHHHHHcC-CCceEEEEecCCCchhhhhhhhh
Q 029791 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFK 48 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~-~~~~ivaInd~~~~~~~~~~l~~ 48 (188)
-||.|+|-|.+|-.-+|.+... .++.+..+|.. .++++=++|.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~--rl~~ldd~f~ 212 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID--RLRQLDDLFG 212 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHH--HHhhhhHhhC
Confidence 4899999999999988877643 35665555543 3444444443
No 434
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=48.94 E-value=33 Score=26.38 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=26.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
++.|.|.|..|+.+++.+.+. ++++++.-|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 478999999999999988654 6999998875
No 435
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=48.90 E-value=19 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVE 29 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ 29 (188)
.+|+|+|+|--|+.++.++.++. ++
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSG-ln 43 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSG-LN 43 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcC-Cc
Confidence 58999999999999988887764 44
No 436
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=48.81 E-value=30 Score=30.50 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.||-|+|.|-+|++.++.+.+.+--+++-.|
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 5899999999999999999887422344443
No 437
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=48.79 E-value=30 Score=32.87 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+||-|-| .|.||+.+++.+.+..+.+++++.-
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 6899999 7999999999998765689988864
No 438
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=48.77 E-value=29 Score=34.27 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC---CCceEEEEecC
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVNDP 36 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~---~~~~ivaInd~ 36 (188)
|+++||.|+|-|..|-..++.+.+. ++++|+-+.+-
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e 39 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE 39 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 7667999999999999888887643 46888888753
No 439
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=48.35 E-value=31 Score=29.42 Aligned_cols=31 Identities=39% Similarity=0.490 Sum_probs=24.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.||-|.| .|.||+.+++.+.+.. .+++.+.|
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 4899999 7999999999998764 55555544
No 440
>PRK09126 hypothetical protein; Provisional
Probab=48.31 E-value=29 Score=30.02 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.1
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
||+.+|.|+|-|..|-..+..+... +++++-+-
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEe
Confidence 7778999999999999888877654 46665554
No 441
>PLN02206 UDP-glucuronate decarboxylase
Probab=48.16 E-value=29 Score=31.43 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=26.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+||-|.| .|.||+.+++.|.+. +.+++++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHC-cCEEEEEeC
Confidence 6899999 799999999999887 478888754
No 442
>PLN02858 fructose-bisphosphate aldolase
Probab=48.06 E-value=22 Score=37.15 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.|||++|+|.+|+.+++++... ++++. +.|.
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~-G~~v~-v~dr 35 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS-GFKVQ-AFEI 35 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC-CCeEE-EEcC
Confidence 5899999999999999999876 47765 4555
No 443
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=47.93 E-value=36 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
..++.|.| .|.+|+.+++.+.++. .+++.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 35799999 7999999999998764 67777754
No 444
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=47.74 E-value=20 Score=29.64 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=27.8
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCcEEEEeCC
Q 029791 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (188)
Q Consensus 93 ~vdiV~e~tg~~~~~~~~~~h~~~Gakkviis~p 126 (188)
++|+|++||+...-.+.+...+++|.. |++-.|
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~~s~ 69 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKD-LLIMSV 69 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCC-EEEECC
Confidence 689999999999999999999999975 444334
No 445
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=47.55 E-value=33 Score=29.55 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHc-CCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~-~~~~~ivaInd~~ 37 (188)
.+++|+|.|..++.+++++.. +| ++-|-|.++.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~ 162 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRS 162 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccC
Confidence 479999999999999998875 55 8888888874
No 446
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=47.16 E-value=31 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.1
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+|-|.| .|.||+.+++.+.+.+ .+++++.-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 789999 6999999999998774 67777764
No 447
>PRK06199 ornithine cyclodeaminase; Validated
Probab=46.90 E-value=48 Score=29.56 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=28.5
Q ss_pred cEEEEEccChHHHHHHHHHHc-CCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~-~~~~~ivaInd~ 36 (188)
.+++|+|.|..+|.+++++.. +|.++-|-|.+.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r 189 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR 189 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC
Confidence 579999999999999999876 556888888887
No 448
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=46.68 E-value=67 Score=26.54 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=25.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
-+|.|+| .|.+|...++.+... +.+++.+.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR-GINVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC-CCeEEEEecC
Confidence 3688988 599999988877766 4788888765
No 449
>PRK06823 ornithine cyclodeaminase; Validated
Probab=46.24 E-value=50 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=28.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.+++|+|.|..++.+++++.....++-|-|.+..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~ 162 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRS 162 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 5799999999999999998866568888888873
No 450
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.12 E-value=44 Score=28.99 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=25.8
Q ss_pred cEEEEEccC-hHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFG-RIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~G-riGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|+|+|.| .+|+.+++.+.+. +..++..+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~ 192 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSR 192 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEECCC
Confidence 589999985 9999999988876 4777777544
No 451
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=45.61 E-value=74 Score=26.93 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=48.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~-~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|.|.|.+|...++.+... +. .++.+. . +.+...++-++.. + ..++.+......
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~-~--~~~~~~~~~~~g~---------------~-~~~~~~~~~~~~-- 234 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKAL-GPANIIVVD-I--DEAKLEAAKAAGA---------------D-VVVNGSDPDAAK-- 234 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEe-C--CHHHHHHHHHhCC---------------c-EEecCCCccHHH--
Confidence 3688999999999888777655 46 344443 2 2333323322210 0 112211111000
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
..... +.. ++|+++||+|.....+.+..++..+..
T Consensus 235 ~~~~~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~ 269 (350)
T cd08240 235 RIIKA-AGG-GVDAVIDFVNNSATASLAFDILAKGGK 269 (350)
T ss_pred HHHHH-hCC-CCcEEEECCCCHHHHHHHHHHhhcCCe
Confidence 00000 122 689999999865556666777776653
No 452
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=45.39 E-value=41 Score=28.85 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+||-|.| .|.||+.+++.+.+. +.+++++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR-GYTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence 6899999 799999999999877 478887654
No 453
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.28 E-value=46 Score=26.61 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=26.2
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|+ .++-|.| .|.||+.+++.+.+.+ .++++...
T Consensus 1 m~-~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 1 MS-KTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 43 5799999 7999999999998764 77777653
No 454
>PRK07577 short chain dehydrogenase; Provisional
Probab=45.24 E-value=47 Score=26.17 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|+..++-|.| .|.||+.+++.+.+.. .+++.+.
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~ 34 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIA 34 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 4445789999 7999999999888764 6776664
No 455
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=45.04 E-value=33 Score=29.76 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
||+|+|-|..|+.+++++.+. +++++++..
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~~~d~ 30 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVIAVDR 30 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEeC
Confidence 799999999999999988776 578777643
No 456
>PRK08163 salicylate hydroxylase; Provisional
Probab=44.93 E-value=38 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=22.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
..+|.|+|.|..|-.++..+... +++++-+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEE
Confidence 46999999999999888777654 4555444
No 457
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=44.79 E-value=1.1e+02 Score=25.38 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=52.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 82 (188)
-+|.|+| .|-+|+..++.+......+++++.+. .+..-++.++ |- . -.++.+. .. . +
T Consensus 151 ~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~----g~-~-----------~~~~~~~-~~-~-~ 208 (336)
T cd08252 151 KTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKEL----GA-D-----------HVINHHQ-DL-A-E 208 (336)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhc----CC-c-----------EEEeCCc-cH-H-H
Confidence 3788999 69999998887776643777777553 2222222211 10 0 1122110 00 0 0
Q ss_pred CCCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCcEEEE
Q 029791 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (188)
Q Consensus 83 ~p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gakkvii 123 (188)
......+ .++|++++|+|.-...+.+..++..+.+-+.+
T Consensus 209 ~i~~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 209 QLEALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred HHHhhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEe
Confidence 0011112 37999999998644556666777766643333
No 458
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=44.60 E-value=45 Score=29.10 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=25.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
++||+|+|-|..|+.+++++.+. +++++.+..
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~-G~~v~~~~~ 43 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRL-GVEVIAVDR 43 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 36899999999999999987766 577776654
No 459
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.93 E-value=37 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=23.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
..+|+|+|.|..|-..++.+.+. +++++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-CCeEEEE
Confidence 47899999999999988888765 3555544
No 460
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=43.87 E-value=95 Score=26.59 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=22.9
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEec
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~-ivaInd 35 (188)
+|.|+|.|.+|+.+++.+...+ +. ++++..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6889999999999888777654 66 665543
No 461
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=43.65 E-value=1.6e+02 Score=27.41 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.|+.|-|||-+|....+-+.+ ++-.+++|.|..
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~-~G~kvvavsD~~ 284 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSE-KGAKVVAVSDSK 284 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHh-cCCEEEEEEcCc
Confidence 589999999999877666654 457888887753
No 462
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=43.53 E-value=33 Score=28.20 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.4
Q ss_pred EEEEEc-cChHHHHHHHHHHcCC-CceEEEEe
Q 029791 5 KIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~-~~~ivaIn 34 (188)
||-|.| .|.||+.+++.+.+.+ ..+++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 578899 7999999999988754 47888775
No 463
>PRK04148 hypothetical protein; Provisional
Probab=43.44 E-value=34 Score=26.13 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.|+.++|+| -|..+++.+.+. +.++++|.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEE
Confidence 579999999 787778877765 58999985
No 464
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=43.25 E-value=36 Score=29.40 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=24.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+|||+|-|..|+.+++++.+. +++++++.
T Consensus 1 ~igiiG~gql~~~l~~aa~~l-G~~v~~~d 29 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL-GIKVHVLD 29 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEC
Confidence 489999999999999988876 47777664
No 465
>PLN02572 UDP-sulfoquinovose synthase
Probab=43.22 E-value=42 Score=30.26 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+||-|-| .|.||+.+++.+.+. +.+++++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKR-GYEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEe
Confidence 6899999 799999999999876 47877764
No 466
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=43.17 E-value=40 Score=31.88 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcC-CCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQR-DDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~-~~~~ivaInd 35 (188)
.+||-|-| .|.||+.+++.|.+. ++.+++++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 46999999 899999999999876 4688888753
No 467
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=42.95 E-value=55 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.7
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEecC
Q 029791 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 6 vgI~G-~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
|-|.| .|-||+.+++.+.+.+ .+++++.|.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 45788 7999999999998764 666776664
No 468
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=42.90 E-value=37 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=22.6
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
||-|-| .|.||+.+.+.+.+.+ +++++.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 899999 6999999999888765 455553
No 469
>PRK06182 short chain dehydrogenase; Validated
Probab=42.79 E-value=53 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.2
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|...++-|.| .|.||+.+++.+.+. +.+++++.
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~ 34 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQ-GYTVYGAA 34 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 5456889999 699999999998876 47777664
No 470
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.79 E-value=39 Score=30.69 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=23.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.||.|.|+|+-|+..+|.+. . +.+++ +.|
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~-g~~v~-v~D 35 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-N-KYDVI-VYD 35 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-C-CCEEE-EEC
Confidence 58999999999999999888 4 57655 455
No 471
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=42.61 E-value=47 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCC-CceEEEEe
Q 029791 3 KVKIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~-~~~ivaIn 34 (188)
.++|-|.| .|.||+.+++.+.+.. ..+++.+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 46899999 7999999999998763 35666553
No 472
>PRK06180 short chain dehydrogenase; Provisional
Probab=42.50 E-value=54 Score=26.93 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+.++-|.| .|-||+.+++.+.+. +.+++++.-
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeC
Confidence 35799999 799999999998876 477776653
No 473
>PRK12827 short chain dehydrogenase; Provisional
Probab=42.46 E-value=51 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.2
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
.+++-|.| .|.||+.+++.+.+.+ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 36899999 7999999999998764 6776654
No 474
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=42.41 E-value=38 Score=27.75 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=23.8
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
||-|.| .|.||+.+++.+.+. +.+++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeC
Confidence 578999 799999999998876 46777764
No 475
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=42.35 E-value=2.1e+02 Score=24.52 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=32.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhh
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF 47 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~ 47 (188)
.++.|.|.|=.+|.++.++.+..--+|+-+|-.....+.++.+|
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 47999999999999999998775456777776533455555544
No 476
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=42.32 E-value=1.8e+02 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=22.8
Q ss_pred eEEcCChhhHhHHHHHHHHHhhcCceEEE
Q 029791 148 IVSNASCTTNCLAPLAKVIHDKFGIVEGL 176 (188)
Q Consensus 148 iis~~sCtT~~lap~l~~l~~~~gI~~~~ 176 (188)
+..-.-.......++++.|.++++.+++.
T Consensus 124 vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ 152 (366)
T COG0683 124 VFRTGPTDNQQAAAAADYLVKKGGKKRVA 152 (366)
T ss_pred eEEecCChHHHHHHHHHHHHHhcCCcEEE
Confidence 67776777778999999999998884443
No 477
>PRK12829 short chain dehydrogenase; Provisional
Probab=42.25 E-value=50 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.2
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
..++-|.| .|.||+.+++.+.+.+ .+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 46899999 7999999999998764 6766665
No 478
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=42.04 E-value=1.3e+02 Score=24.75 Aligned_cols=89 Identities=10% Similarity=0.165 Sum_probs=47.6
Q ss_pred EEEEEcc-ChHHHHHHHHHHcCCCceEEEEecCCCchhhhhhhhhcccccCcCCCcceEEeCCCeeEECCEEEEEEeecC
Q 029791 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (188)
Q Consensus 5 kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd~~~~~~~~~~l~~yDS~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 83 (188)
+|.|+|. |.+|...++.+... +.+++.... +.+...++.++.. + ..++.+... .+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~---~~~~~~~~~~~g~---------------~-~~~~~~~~~----~~ 204 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKL-GYTVVALTG---KEEQADYLKSLGA---------------S-EVLDREDLL----DE 204 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHc-CCEEEEEeC---CHHHHHHHHhcCC---------------c-EEEcchhHH----HH
Confidence 6899995 99999988876655 466555543 2333433332111 0 112211100 00
Q ss_pred CCCCCcccCCccEEEeecCcccCHHhHHHHHhCCCc
Q 029791 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (188)
Q Consensus 84 p~~~~w~~~~vdiV~e~tg~~~~~~~~~~h~~~Gak 119 (188)
..+. +...++|+|++|+|.. ..+.+..++..+..
T Consensus 205 ~~~~-~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~ 238 (325)
T cd05280 205 SKKP-LLKARWAGAIDTVGGD-VLANLLKQTKYGGV 238 (325)
T ss_pred HHHH-hcCCCccEEEECCchH-HHHHHHHhhcCCCE
Confidence 0000 1223689999999973 55666667765553
No 479
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=41.88 E-value=87 Score=26.40 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaI 33 (188)
-+|.|.|.|.+|...++.+...+...++++
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~ 197 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMV 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 378889999999988877766543566664
No 480
>PLN02686 cinnamoyl-CoA reductase
Probab=41.70 E-value=54 Score=28.57 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=27.1
Q ss_pred CccEEEEEc-cChHHHHHHHHHHcCCCceEEEEecC
Q 029791 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 2 ~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
++.+|-|-| .|.||+.+++.+.+. +.+++++.+.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~ 86 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDT 86 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 346899999 799999999999876 4787776553
No 481
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.67 E-value=43 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.||.|+|+|..|+..++.+.+.+ .++ .+.|.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G-~~v-~~~D~ 40 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGG-AEV-IAWDD 40 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEE-EEECC
Confidence 48999999999999888887764 664 45564
No 482
>PRK08017 oxidoreductase; Provisional
Probab=41.17 E-value=59 Score=25.96 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.8
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.++-|.|. |.||+.+++.+.+.+ .+++++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 47999995 999999999998764 67766643
No 483
>PRK06914 short chain dehydrogenase; Provisional
Probab=41.08 E-value=59 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.7
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 1 m~~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
|+...+-|.| .|.+|+.+++.+.+. +.+++++..
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r 35 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMR 35 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeC
Confidence 5545678888 799999999999876 477777753
No 484
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=41.01 E-value=47 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=25.7
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
+|-|-| .|.||+.+++.|.+. +.+++++.-
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 488999 799999999999987 588888875
No 485
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.81 E-value=57 Score=25.74 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=24.6
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 029791 3 KVKIGING-FGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 3 ~~kvgI~G-~GriGr~~~r~~~~~~~~~ivaI 33 (188)
+.++-|.| .|.||+.+++.+.+. +.+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence 35899999 799999999988766 4777766
No 486
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=40.77 E-value=46 Score=31.55 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecCC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~~ 37 (188)
.++-|+|.|..|+.++|++...+....|++-|..
T Consensus 117 ~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd 150 (588)
T COG1086 117 IRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDD 150 (588)
T ss_pred CceEEEcCchHHHHHHHHHHhCCCcceEEEECCC
Confidence 6899999999999999999987779999988863
No 487
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.70 E-value=56 Score=29.23 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+|.|.|.|.+|+..+|.+.+.+ .++++ .|.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~-~d~ 36 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAA-YDA 36 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence 58999999999999999888775 66554 453
No 488
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=40.60 E-value=75 Score=28.27 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=28.8
Q ss_pred cCCCCCCcccCCccEEEeecCcccCHHh-HHHHHhCCCcEEEEeCCCC--CCCeEE
Q 029791 82 RNPEEIPWAETGAEYVVESTGVFTDKDK-AAAHLKGGAKKVIISAPSK--DAPMFV 134 (188)
Q Consensus 82 ~~p~~~~w~~~~vdiV~e~tg~~~~~~~-~~~h~~~Gakkviis~ps~--d~p~~V 134 (188)
++.+++-.+ +.|.|+||....-++-. .+-.-..|.| ||-|..++ .+|+=|
T Consensus 156 ~s~edll~g--nPdFvvDciDNidtKVdLL~y~~~~~l~-Viss~GaaaksDPTrv 208 (430)
T KOG2018|consen 156 SSEEDLLSG--NPDFVVDCIDNIDTKVDLLEYCYNHGLK-VISSTGAAAKSDPTRV 208 (430)
T ss_pred CchhhhhcC--CCCeEeEhhhhhhhhhHHHHHHHHcCCc-eEeccCccccCCCcee
Confidence 334455554 58999999987766633 2333346774 55544432 367554
No 489
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=40.20 E-value=48 Score=28.83 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=24.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|.+.+|.|+|-|..|...+.++... +++++-+-
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E 33 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQ-GRSVAVIE 33 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEc
Confidence 6556899999999999888777654 35555443
No 490
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=40.15 E-value=46 Score=28.30 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=22.7
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 029791 5 KIGING-FGRIGRLVARVILQRDDVELVAV 33 (188)
Q Consensus 5 kvgI~G-~GriGr~~~r~~~~~~~~~ivaI 33 (188)
||-|-| .|.||+.+++.+.+.+.-.++++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 899999 79999999999987753334444
No 491
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=39.61 E-value=2e+02 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=22.5
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaIn 34 (188)
-+|.|+|. |.+|...++.+... +.+++.+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~-G~~vi~~~ 221 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAG-GGNPVAVV 221 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc-CCeEEEEc
Confidence 37889996 99999988777655 47766654
No 492
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.60 E-value=46 Score=29.79 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 5 kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
||.|+|.|+.|+..++.+...+ .++. +.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEVV-VSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEE-EECC
Confidence 7999999999999988888764 6644 5554
No 493
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=39.54 E-value=53 Score=29.39 Aligned_cols=32 Identities=31% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
|| .||-|.|-|.+|..+++++.+. +++++++.
T Consensus 1 ~~-k~iLi~g~g~~a~~i~~aa~~~-G~~vv~~~ 32 (451)
T PRK08591 1 MF-DKILIANRGEIALRIIRACKEL-GIKTVAVH 32 (451)
T ss_pred Cc-ceEEEECCCHHHHHHHHHHHHc-CCeEEEEc
Confidence 54 7999999999999999999887 48888773
No 494
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=39.18 E-value=54 Score=28.49 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHc-CCCceEEEEec
Q 029791 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVND 35 (188)
Q Consensus 1 m~~~kvgI~G~GriGr~~~r~~~~-~~~~~ivaInd 35 (188)
|+ .+|.|+|.|.-|-..++.+.+ .++.+|+-|..
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~ 35 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITA 35 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC
Confidence 54 599999999999999888864 35688887864
No 495
>PLN02214 cinnamoyl-CoA reductase
Probab=39.17 E-value=59 Score=27.92 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=25.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
++|-|-| .|.||+.+++.+.+.+ .+++++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 5899999 6999999999998774 77777653
No 496
>PRK07589 ornithine cyclodeaminase; Validated
Probab=39.07 E-value=72 Score=28.12 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=27.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
.+++|+|.|..++.+++++...-.++=|-|.+.
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r 162 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDI 162 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC
Confidence 579999999999999998876545777777776
No 497
>PRK07023 short chain dehydrogenase; Provisional
Probab=39.04 E-value=56 Score=26.01 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G-~GriGr~~~r~~~~~~~~~ivaIn 34 (188)
+++-|.| .|.||+.+++.+.+. +.+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~-G~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP-GIAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC-CCEEEEEe
Confidence 4899999 799999999998876 46766654
No 498
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=38.84 E-value=53 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=26.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEecC
Q 029791 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (188)
Q Consensus 3 ~~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd~ 36 (188)
..||.|+|.|-+|..+++.+... ++.-+.+.|+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~ 53 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDD 53 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEEC
Confidence 36899999999999999999766 4766666665
No 499
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=38.82 E-value=2.5e+02 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=23.0
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEe
Q 029791 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (188)
Q Consensus 4 ~kvgI~G~-GriGr~~~r~~~~~~~~~ivaIn 34 (188)
-+|.|.|. |.+|...++.+... +++++++.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA-GANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCeEEEEe
Confidence 37889995 99999988777655 47777664
No 500
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=38.58 E-value=2.3e+02 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEec
Q 029791 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (188)
Q Consensus 4 ~kvgI~G~GriGr~~~r~~~~~~~~~ivaInd 35 (188)
.+|-|+|-|.++..=++.+++.+ .+++.|..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap 56 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKG-CYVYILSK 56 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEcC
Confidence 57999999999988788887754 66665653
Done!