BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029792
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QJS|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
Length = 269
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 92 NGSCDVVHYGIGIPRPD------FLDGA--TYLGTRFTDGFLCNLWEKLDFIWYYEDVQT 143
G D +H+G GI P +DG T G FT F+ W + D +
Sbjct: 116 RGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPG-STAWTWTDTRN 174
Query: 144 KKPVRWDFSDGISV 157
KPVR ++D +S
Sbjct: 175 GKPVRIAYADSLSA 188
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 92 NGSCDVVHYGIGIPRPD------FLDGA--TYLGTRFTDGFLCNLWEKLDFIWYYEDVQT 143
G D +H+G GI P +DG T G FT F+ W + D +
Sbjct: 116 RGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPG-STAWTWTDTRN 174
Query: 144 KKPVRWDFSDGISV 157
KPVR ++D +S
Sbjct: 175 GKPVRIAYADSLSA 188
>pdb|2QIN|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
Length = 269
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 92 NGSCDVVHYGIGIPRPD------FLDGA--TYLGTRFTDGFLCNLWEKLDFIWYYEDVQT 143
G D +H+G GI P +DG T G FT F+ W + D +
Sbjct: 116 RGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAG-HTPGSTAWTWTDTRN 174
Query: 144 KKPVRWDFSDGISV 157
KPVR ++D +S
Sbjct: 175 GKPVRIAYADSLSA 188
>pdb|2VQX|A Chain A, Precursor Of Protealysin, Metalloproteinase From Serratia
Proteamaculans
Length = 341
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 98 VHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVRWDFS 152
VH GIP F AT LG G+ WEK +IWY P DF+
Sbjct: 263 VHLNSGIPNRAFYLAATALG-----GYA---WEKAGYIWYDTLCDKALPQDADFA 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.488
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,451,540
Number of Sequences: 62578
Number of extensions: 299289
Number of successful extensions: 623
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 8
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)