BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029792
         (188 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q67YC9|Y4141_ARATH Uncharacterized protein At4g14100 OS=Arabidopsis thaliana
           GN=At4g14100 PE=2 SV=1
          Length = 206

 Score =  204 bits (518), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 26  PVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
           PVPTPWP +FHAL + N S D L +   WYDW  GRN  IIQ+QL  + Y++EWNNGTSF
Sbjct: 28  PVPTPWPHQFHALMFMNYSGD-LSMIDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSF 86

Query: 86  YYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
           +YTL E+ SC      +GI RP++LDGA YLG +   GFLCN+WEK+DFIWYYEDV+TK+
Sbjct: 87  FYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKR 146

Query: 146 PVRWDFSDGISVHVMTFEVGAVLHDPLIQAPSYCFNQD 183
           PV+W F  G   H+MT+EVGAVL D   QAP YCFN++
Sbjct: 147 PVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184


>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
           DSM 9485) GN=pth PE=3 SV=1
          Length = 188

 Score = 33.9 bits (76), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 39  TYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQL----SDLLYNVEWNNGT--SFYYTLGEN 92
           TY NLS   +    QWY     R + +I   L    + L      + GT       +G+ 
Sbjct: 63  TYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL 122

Query: 93  GSCDV--VHYGIGIPRPDFLDGATYLGTRFT 121
           G+ +   +  GIG P P  +D A Y+ +RFT
Sbjct: 123 GTTEFPRLRIGIGQP-PGQMDAADYVLSRFT 152


>sp|P06946|CAPSD_WDVS Capsid protein OS=Wheat dwarf virus (isolate Sweden) GN=V1 PE=3
           SV=1
          Length = 260

 Score = 32.7 bits (73), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 13  ILALPWLQFCETVPVPTPWPERFHALTYK---NLSSDGLQIAH----QWYDWPRGRNVYI 65
           I  +PW     T  V   W  RF  +  K   NL +DG ++      Q Y+W  G+N+  
Sbjct: 135 IFTMPWNLLPSTWTVQRAWSHRF-VVKRKWTVNLVTDGRKVGSKTVDQRYNWVVGKNIVD 193

Query: 66  IQKQLSDLLYNVEWNN 81
             K    L    EW N
Sbjct: 194 ANKFFKGLRVTTEWMN 209


>sp|P50528|PLO1_SCHPO Serine/threonine-protein kinase plo1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=plo1 PE=1 SV=1
          Length = 683

 Score = 32.3 bits (72), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 36  HALTYKNLSSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSC 95
           HALT ++  S+ +    +W D+    N Y +  QLSD    V +N+ TS  ++  E    
Sbjct: 479 HALTSEDADSEPVLFITKWVDY---SNKYGLGYQLSDESVGVHFNDDTSLLFSADE---- 531

Query: 96  DVVHYGI 102
           +VV Y +
Sbjct: 532 EVVEYAL 538


>sp|C5CFR9|PTH_KOSOT Peptidyl-tRNA hydrolase OS=Kosmotoga olearia (strain TBF 19.5.1)
           GN=pth PE=3 SV=1
          Length = 190

 Score = 31.6 bits (70), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 98  VHYGIGIPRPDFLDGATYLGTRFTDGFLCNLWEKLDF 134
           +  GIG P+PD +D  +Y+   FTD  L  LW+ LD 
Sbjct: 129 IRIGIG-PKPDDIDMVSYVLGEFTDSELKVLWKVLDL 164


>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 GN=rep PE=3
            SV=1
          Length = 6793

 Score = 30.4 bits (67), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)

Query: 36   HALTYKNLSSD-GLQIAHQWYDWPRGRNVY-------IIQKQLSDLLY---NVEWNNGTS 84
            H  +  NL SD G    H ++ W  GR+VY       + +  + DL Y   N + NN  +
Sbjct: 4187 HEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYTMMDLCYALRNFDENNCET 4246

Query: 85   FYYTLGENGSCD 96
                L   G+CD
Sbjct: 4247 LKKILVVVGACD 4258


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.142    0.480 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,442,005
Number of Sequences: 539616
Number of extensions: 3491388
Number of successful extensions: 5055
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5052
Number of HSP's gapped (non-prelim): 7
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)