Query 029792
Match_columns 188
No_of_seqs 53 out of 55
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00811 Ependymin: Ependymin; 96.8 0.017 3.7E-07 45.5 9.5 99 79-179 19-133 (133)
2 PF14371 DUF4412: Domain of un 96.7 0.0043 9.2E-08 44.2 5.5 64 114-178 2-87 (89)
3 smart00026 EPEND Ependymins. E 91.7 2.7 5.9E-05 36.1 10.4 147 32-182 6-174 (191)
4 PF09865 DUF2092: Predicted pe 81.2 4.7 0.0001 34.6 6.0 61 111-171 126-197 (214)
5 PF12228 DUF3604: Protein of u 71.0 4.2 9.1E-05 40.3 3.4 88 47-153 469-561 (592)
6 PRK09455 rseB anti-sigma E fac 67.0 50 0.0011 29.9 9.1 121 45-168 53-195 (319)
7 PF04967 HTH_10: HTH DNA bindi 51.4 8.8 0.00019 26.6 1.2 18 54-71 17-34 (53)
8 COG3413 Predicted DNA binding 44.7 12 0.00025 31.1 1.2 18 54-71 172-189 (215)
9 COG3026 RseB Negative regulato 35.6 44 0.00095 31.2 3.5 152 10-167 9-193 (320)
10 PF06875 PRF: Plethodontid rec 30.5 35 0.00077 30.1 2.0 41 2-42 140-182 (214)
11 PF11246 Phage_gp53: Base plat 25.9 83 0.0018 27.1 3.4 72 30-109 54-136 (193)
12 COG3308 Predicted membrane pro 23.2 43 0.00093 27.7 1.1 30 3-32 18-47 (131)
13 COG3257 GlxB Uncharacterized p 21.8 56 0.0012 29.7 1.7 16 154-169 181-196 (264)
14 PRK14864 putative biofilm stre 20.6 65 0.0014 25.3 1.6 64 11-77 12-83 (104)
No 1
>PF00811 Ependymin: Ependymin; InterPro: IPR001299 Ependymins are secretory proteins found predominantly in the cerebrospinal fluid of teleost fish [, ]. A bound form of the glycoproteins is associated with the extracellular matrix, probably with collagen fibrils, that may be the functional form of ependymins []. The proteins bind calcium via N-linked sialic acid residues. The molecular function of ependymins appear to be related to cell contact phenomena involving the extracellular matrix [].; GO: 0005509 calcium ion binding, 0007160 cell-matrix adhesion, 0005576 extracellular region
Probab=96.75 E-value=0.017 Score=45.53 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=66.6
Q ss_pred ecCceeEEEEcCCCCceeEeecCcCCCCCCcc-ccceecceeeeCce-------eeeeccccC--cEEEEEeeccC---C
Q 029792 79 WNNGTSFYYTLGENGSCDVVHYGIGIPRPDFL-DGATYLGTRFTDGF-------LCNLWEKLD--FIWYYEDVQTK---K 145 (188)
Q Consensus 79 w~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL-~gA~YlG~~~v~G~-------~C~vW~K~d--fi~Yyedv~T~---r 145 (188)
.+.|+.|-++ .++++|++.....- .+|-=+ ++|+|+|+...++- ..+.|...- .--.|.-..|. .
T Consensus 19 y~eg~~Y~Id-~~~~~C~k~~L~~~-f~~~~IP~nAt~~g~~~lG~~~~~~~gl~v~~w~~~~~~~~g~y~~~~t~~gCi 96 (133)
T PF00811_consen 19 YNEGVMYEID-LKNGSCTKSPLTGP-FHPFCIPPNATFLGQFYLGSSSIPGDGLLVDSWSGKVPDGSGIYSITVTEFGCI 96 (133)
T ss_pred ccCCcEEEEE-CCCCcEeEEECCCC-cccccCCCCCEEEEEEEeCCCCCCCCcEEEEEeccCccCCceEEEEEccCCCEE
Confidence 3578888887 45679999887642 333323 58999988887665 999999543 22445544442 8
Q ss_pred ceEeeecCCceeeEE--EEEeCcccCC-CCCccCCCc
Q 029792 146 PVRWDFSDGISVHVM--TFEVGAVLHD-PLIQAPSYC 179 (188)
Q Consensus 146 PV~W~F~~G~~~hVm--tFevG~vleD-~~wqaP~YC 179 (188)
||+-.|+...+.+++ -|++=.-|+| +.|..|++|
T Consensus 97 PV~~~~~~~~~~~~~~~f~nvt~gI~DP~vF~pP~~C 133 (133)
T PF00811_consen 97 PVSESFYGEKSGWVTTSFFNVTIGIKDPSVFDPPSFC 133 (133)
T ss_pred EEEEEEECCCCcEEEEEEEeeEEcCCChhhcCCCCCC
Confidence 999998865443333 3444444656 699999999
No 2
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=96.74 E-value=0.0043 Score=44.18 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=48.1
Q ss_pred eecceeeeCceeeeeccc--cC-----cEEEEEe------------eccCCceEeeecC-Cceee--EEEEEeCcccCCC
Q 029792 114 TYLGTRFTDGFLCNLWEK--LD-----FIWYYED------------VQTKKPVRWDFSD-GISVH--VMTFEVGAVLHDP 171 (188)
Q Consensus 114 ~YlG~~~v~G~~C~vW~K--~d-----fi~Yyed------------v~T~rPV~W~F~~-G~~~h--VmtFevG~vleD~ 171 (188)
+=+|++.|+|+.|+.|.- .+ .+|+-.| ...|.|||-.-.+ |.... +...+.+.+ +++
T Consensus 2 ~~tGt~tI~G~~c~ky~v~~~~~~~~~~~W~t~d~~~~~~~~~~~~~~~G~pl~~~~~~~~~~~~~~~~~i~~~~~-~~~ 80 (89)
T PF14371_consen 2 TKTGTKTIAGYKCEKYEVTMDGGGVTMEVWITKDGAGSLQKAQELKKLKGFPLKTESTDNGGGMEMEVTSIKRGPV-PAS 80 (89)
T ss_pred eECCCEEECCEEeEEEEEEecCCCeEEEEEEcCCccchhhhhhhhccCCCeEEEEEEeCCCcEEEEEEEEeEEcCC-Chh
Confidence 347999999999999993 23 5666666 2357799987664 33333 888999996 999
Q ss_pred CCccCCC
Q 029792 172 LIQAPSY 178 (188)
Q Consensus 172 ~wqaP~Y 178 (188)
.|++|+-
T Consensus 81 ~F~iP~g 87 (89)
T PF14371_consen 81 LFEIPAG 87 (89)
T ss_pred HcCCCCC
Confidence 9999973
No 3
>smart00026 EPEND Ependymins. Ependymins are the predominant proteins in the cerebrospinal fluid (CSF) of teleost fish. They have been implicated in the neurochemistry of memory and neuronal regeneration. They are glycoproteins of about 200 amino acids that can bind calcium. Four cysteines are conserved that probably form disulfide bonds.
Probab=91.71 E-value=2.7 Score=36.08 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=82.5
Q ss_pred chhhhhhhhccCCCC-CceeeeeeeeCCCCcc-hhhhhhhh-cCceee--eEecCceeEEEEcCCCCceeEeecCcCCCC
Q 029792 32 PERFHALTYKNLSSD-GLQIAHQWYDWPRGRN-VYIIQKQL-SDLLYN--VEWNNGTSFYYTLGENGSCDVVHYGIGIPR 106 (188)
Q Consensus 32 P~qFHa~l~~nl~~G-~l~~~dl~YDwp~gRn-~niIq~Ql-~~~lyd--~Ew~NgTsfy~~l~~~~~Cr~~~~~vGiL~ 106 (188)
|+|+...+-.-..+| .....+.=||--|.|- |--....+ ....|| +..+-|+-|=++ -.+++|+......- -+
T Consensus 6 P~~~eg~~~v~~~~~~~~a~g~~sYD~~nkr~R~~E~~~~~n~t~~~d~L~lf~eGv~Y~id-~kn~sC~K~~L~~~-~h 83 (191)
T smart00026 6 PPLTSGTMKVASTGGHDLASGEFSYDSKAKKLRFVEDTMHANKTSHLDVLIHFEEGVFYDID-SKNQSCKKETLQSR-KH 83 (191)
T ss_pred chhceeEEEEEeCCCceEEEEEEEeccCCCEEEEEecccccCCceeeEEEEEecCCcEEEEe-cCCCceeeeecCCC-cc
Confidence 556655554321233 4555677799998887 21111122 233444 234678777666 46779977655422 12
Q ss_pred CCcc-ccceecceeeeC-------ceeeeeccc-c-CcEEEEEeeccC---CceEeeecC---CceeeEEEEEeCcccCC
Q 029792 107 PDFL-DGATYLGTRFTD-------GFLCNLWEK-L-DFIWYYEDVQTK---KPVRWDFSD---GISVHVMTFEVGAVLHD 170 (188)
Q Consensus 107 PdWL-~gA~YlG~~~v~-------G~~C~vW~K-~-dfi~Yyedv~T~---rPV~W~F~~---G~~~hVmtFevG~vleD 170 (188)
|-=+ ++||++|+-..+ |...++|+. + +..-+|.-..|. .||.=.|++ |.+..- |+|=.-|+|
T Consensus 84 p~eIP~nAT~~ge~~lGs~~~~~~Gl~v~~W~g~~p~~~g~y~~~~T~~gCiPVs~~~~~~~~~~~~~F--fdv~~gI~D 161 (191)
T smart00026 84 LLEIPPDATHESELYLGSPTIQEQGLRVRVWNGKVPELHGHYSLSTTSCGCLPLSGSYSTDKKDLLFSF--FGVETEVKD 161 (191)
T ss_pred cccCCCCCceEEEEEecCCCCCcCCEEEEEecCcCCCcCccEEEEEecCCEEEEEEEEEeccceEEEEE--EeeEeccCC
Confidence 2111 488888888874 899999953 2 223344443343 688866653 322222 233222444
Q ss_pred -CCCccCCCccCC
Q 029792 171 -PLIQAPSYCFNQ 182 (188)
Q Consensus 171 -~~wqaP~YCf~~ 182 (188)
+.|-.|++|..-
T Consensus 162 P~vFiPP~~C~~~ 174 (191)
T smart00026 162 PEVFVPPSYCEGV 174 (191)
T ss_pred ccccCCccccCCc
Confidence 599999999863
No 4
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=81.22 E-value=4.7 Score=34.64 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=41.6
Q ss_pred ccceecceeeeCceeeeecc----ccCcEEEEEeeccCCceEeeec----CCceeeEEEEE---eCcccCCC
Q 029792 111 DGATYLGTRFTDGFLCNLWE----KLDFIWYYEDVQTKKPVRWDFS----DGISVHVMTFE---VGAVLHDP 171 (188)
Q Consensus 111 ~gA~YlG~~~v~G~~C~vW~----K~dfi~Yyedv~T~rPV~W~F~----~G~~~hVmtFe---vG~vleD~ 171 (188)
..|.|+|++.|+|..||-.. .+|+.-.=++-..--|+|.+.- .|..+|..+|. .+..++++
T Consensus 126 ~~~~~vG~~~V~G~~c~HlAfr~~~~DwQiWI~~g~~PLP~k~vIT~k~~~~~PQy~~~~~~W~~~p~~~~~ 197 (214)
T PF09865_consen 126 TSAKYVGQSVVGGVECDHLAFRNDDVDWQIWIADGDKPLPRKYVITYKTDPGSPQYSAEFSDWNLDPKLPAD 197 (214)
T ss_pred eEEEEeeeEEECCEEeEEEEEecCCceEEEEEcCCCcceeeEEEEEECCCCCCceEEEEEecccCCCCCCcc
Confidence 37999999999999999765 4554444444444478886532 48888877775 44455444
No 5
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=71.02 E-value=4.2 Score=40.30 Aligned_cols=88 Identities=26% Similarity=0.545 Sum_probs=62.2
Q ss_pred CceeeeeeeeCCCCcchhhhhhhhcCceeeeEecCceeEEEEcCCCCceeEeecCcCCCCCCccccceecceeeeCceee
Q 029792 47 GLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHYGIGIPRPDFLDGATYLGTRFTDGFLC 126 (188)
Q Consensus 47 ~l~~~dl~YDwp~gRn~niIq~Ql~~~lyd~Ew~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL~gA~YlG~~~v~G~~C 126 (188)
++|+|+-|-|=. +|.-+.+|||-|.++... + +..++|..++-.|-+ +.|+|.+.-- ..-+|
T Consensus 469 RiQIIKGW~d~~---------G~t~E~VyDVA~S~~r~~--~-~~g~~~p~vg~tVd~------~~~~~t~~iG-a~eL~ 529 (592)
T PF12228_consen 469 RIQIIKGWVDAD---------GETHEKVYDVAWSDGRQP--D-ADGKRCPPVGATVDL------ATCSYTNTIG-AAELC 529 (592)
T ss_pred eEEEEEEeEcCC---------CceeeEEEEEEecCCccc--C-CCCCcCCCCCCcccc------ccceecCCCC-chheE
Confidence 556666665532 444568999999888743 2 346678888877765 4555554311 23489
Q ss_pred eeccccCcE-----EEEEeeccCCceEeeecC
Q 029792 127 NLWEKLDFI-----WYYEDVQTKKPVRWDFSD 153 (188)
Q Consensus 127 ~vW~K~dfi-----~Yyedv~T~rPV~W~F~~ 153 (188)
.||+..||- .||-.|..--=|||.-|+
T Consensus 530 ~vW~DPdFdp~q~AfYY~RVlEiPT~RWs~~D 561 (592)
T PF12228_consen 530 AVWQDPDFDPSQSAFYYVRVLEIPTPRWSTYD 561 (592)
T ss_pred EEeeCcCCCCCCceEEEEEeeccCCCcchHHH
Confidence 999999974 899999998889998664
No 6
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=66.96 E-value=50 Score=29.88 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=73.4
Q ss_pred CCCceeeeeeeeCCCCcchhhhhhhhcCceeeeEecCceeEEEEcCCCCceeEeec-CcCCCC----CCccc-----cce
Q 029792 45 SDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHY-GIGIPR----PDFLD-----GAT 114 (188)
Q Consensus 45 ~G~l~~~dl~YDwp~gRn~niIq~Ql~~~lyd~Ew~NgTsfy~~l~~~~~Cr~~~~-~vGiL~----PdWL~-----gA~ 114 (188)
+|+++...++----+|..+..|...-|.+- .+--.|.-.-||.+ ..+....... ..+.++ =|.-. ..+
T Consensus 53 ~~~i~s~ri~H~~~~~~e~erL~~LdG~~r-EviR~~d~V~~~~p-~~~~~~l~~~~~~~~fP~~l~~~~~~l~~~Y~~~ 130 (319)
T PRK09455 53 KQGIESLRYRHARLDNKPLAQLLQMDGPRR-EIIQRGNEISYFEP-GLEPFTLNGDHIVDSLPSLIYADFKRLSKYYDFI 130 (319)
T ss_pred CCeEEEEEEEEEEeCCEEEEEEEecCCCce-EEEEECCEEEEEec-CCceEEEecccccccCccccccChhHhhhceeEE
Confidence 466776666655555555555544334332 22233555555553 3345555543 233333 23222 345
Q ss_pred ecceeeeCceeeeecc---ccCcEEE----EEeeccCCceEeeecCC-----ceeeEEEEEeCccc
Q 029792 115 YLGTRFTDGFLCNLWE---KLDFIWY----YEDVQTKKPVRWDFSDG-----ISVHVMTFEVGAVL 168 (188)
Q Consensus 115 YlG~~~v~G~~C~vW~---K~dfi~Y----yedv~T~rPV~W~F~~G-----~~~hVmtFevG~vl 168 (188)
++|++.|+|..|.+=+ |.+ ..| |=|..|+.|+|..+++. -+..+..++++..+
T Consensus 131 ~~g~~rVaGr~~~vi~~~PkD~-~rY~~~lwiD~et~llLk~~~~d~~g~~leq~~f~~l~i~~~i 195 (319)
T PRK09455 131 SVGRTRIADRLCQVIRIVPKDG-TRYSYIVWIDEESKLPLRVDLLDRDGETLEQFRVISFTVNDDI 195 (319)
T ss_pred EccccEECCeeEEEEEEEECCC-CCcceEEEEEcCCCCEEeEEEecCCCCEEEEEEEEEEEeCCCh
Confidence 6999999999998877 333 355 99999999999999963 34456677777755
No 7
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=51.42 E-value=8.8 Score=26.62 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=16.7
Q ss_pred eeeCCCCcchhhhhhhhc
Q 029792 54 WYDWPRGRNVYIIQKQLS 71 (188)
Q Consensus 54 ~YDwp~gRn~niIq~Ql~ 71 (188)
|||||++-++.-|-.+||
T Consensus 17 Yfd~PR~~tl~elA~~lg 34 (53)
T PF04967_consen 17 YFDVPRRITLEELAEELG 34 (53)
T ss_pred CCCCCCcCCHHHHHHHhC
Confidence 999999999999999987
No 8
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=44.74 E-value=12 Score=31.08 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=17.2
Q ss_pred eeeCCCCcchhhhhhhhc
Q 029792 54 WYDWPRGRNVYIIQKQLS 71 (188)
Q Consensus 54 ~YDwp~gRn~niIq~Ql~ 71 (188)
||||||+..+.-|-.|||
T Consensus 172 YFd~PR~~~l~dLA~~lG 189 (215)
T COG3413 172 YFDYPRRVSLKDLAKELG 189 (215)
T ss_pred CCCCCccCCHHHHHHHhC
Confidence 999999999999999998
No 9
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=35.61 E-value=44 Score=31.19 Aligned_cols=152 Identities=19% Similarity=0.200 Sum_probs=82.9
Q ss_pred HHHHHhhhceeeecCCCCCCCCchhhhhhhhccCC---------CCCceeeeeeeeCCCCcchhhhhhhh---cCceee-
Q 029792 10 SLIILALPWLQFCETVPVPTPWPERFHALTYKNLS---------SDGLQIAHQWYDWPRGRNVYIIQKQL---SDLLYN- 76 (188)
Q Consensus 10 ~~~~~~~~~~~~~~~~p~P~~WP~qFHa~l~~nl~---------~G~l~~~dl~YDwp~gRn~niIq~Ql---~~~lyd- 76 (188)
+|+.+++.+.-+.++++..+.|=.+.|+..-.+-. +|--++-=+|| |-.|--..|| |.+--.
T Consensus 9 ~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~lnYe~sfv~~~~~~m~slryrH~-----~~D~~~~aqLl~LDG~~rEv 83 (320)
T COG3026 9 LLLLGSLLLSAAASAESASAAWLQKMNEASQSLNYELSFVYTRKQGMESLRYRHA-----RLDNKPLAQLLQLDGPRREV 83 (320)
T ss_pred HHHHHHHhhhhhhhccCccHHHHHHHHHHHHhcCcEEEEEEEcCCCcccceeeee-----hhcCcHHHHHHhccCcceee
Confidence 45555555555666666666888888877764311 12111111221 1122222333 333332
Q ss_pred eEecCceeEEEEcC-CCCceeEee--cCcC-CCCCCccccc-----eecceeeeCceeeeecc---ccCcE---EEEEee
Q 029792 77 VEWNNGTSFYYTLG-ENGSCDVVH--YGIG-IPRPDFLDGA-----TYLGTRFTDGFLCNLWE---KLDFI---WYYEDV 141 (188)
Q Consensus 77 ~Ew~NgTsfy~~l~-~~~~Cr~~~--~~vG-iL~PdWL~gA-----~YlG~~~v~G~~C~vW~---K~dfi---~Yyedv 141 (188)
+--+|-+|++ .++ +..+-.... -... ++.-|.-.=+ .-+|++.|-|..|.|=. |.+|. .-|-|.
T Consensus 84 vrr~n~vsyf-~pg~~~ft~~~~~i~ds~Pal~~tdf~~Ls~~YDf~~vGr~RVAgr~c~virvvpkD~~RY~Y~vw~D~ 162 (320)
T COG3026 84 VRRGNEVSYF-EPGLEPFTLNGDYIVDSLPALLNTDFKRLSSYYDFRKVGRTRVAGRLCEVIRVVPKDGFRYSYIVWLDE 162 (320)
T ss_pred eeeCCEEEee-cCCcceeeecccchhhhhHHHHhcCHHHhhhhccHhhcchhhhcCCceeEEEEccCCCceEEEEEEEec
Confidence 3345666655 322 111111000 0111 3334443322 33799999999999987 55644 336789
Q ss_pred ccCCceEeeec--CC---ceeeEEEEEeCcc
Q 029792 142 QTKKPVRWDFS--DG---ISVHVMTFEVGAV 167 (188)
Q Consensus 142 ~T~rPV~W~F~--~G---~~~hVmtFevG~v 167 (188)
.||-|.|-.-. +| -++-|++|+||..
T Consensus 163 ~s~LplrsdlLdrdG~~LEQfrvi~~~vg~~ 193 (320)
T COG3026 163 ESGLPLRSDLLDRDGELLEQFRVIQFNVGDP 193 (320)
T ss_pred cCCCchhhhhhccccceeeeEEEEEEEeCCc
Confidence 99999997666 35 5788999999964
No 10
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=30.46 E-value=35 Score=30.14 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=28.1
Q ss_pred ccchhhHHHHHHHhhhceeeecCCCCCCCCchhh--hhhhhcc
Q 029792 2 RLNLSSIISLIILALPWLQFCETVPVPTPWPERF--HALTYKN 42 (188)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~P~~WP~qF--Ha~l~~n 42 (188)
+.|+-+|+|=|...|+-+++..++|.|+|++.-| ++.+-+-
T Consensus 140 ~~~~qgL~sniaaIMtaLG~~~~~~~p~P~~~p~~g~~~F~kK 182 (214)
T PF06875_consen 140 RASAQGLLSNIAAIMTALGFPVPPPEPDPLVVPFGGSAVFEKK 182 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCccHHHHHH
Confidence 4678899999999999999988665554443333 4444443
No 11
>PF11246 Phage_gp53: Base plate wedge protein 53; InterPro: IPR022607 The baseplate of Enterobacteria phage T4 controls host cell recognition, attachment, tail sheath contraction and viral DNA ejection. The structure of the baseplate suggests a mechanism of baseplate structural transition during the initial stages of T4 infection. The baseplate is assembled from six identical wedges that surround the central hub. Gp53, along with other T4 gene products, combine sequentially to assemble a wedge [].
Probab=25.86 E-value=83 Score=27.09 Aligned_cols=72 Identities=22% Similarity=0.348 Sum_probs=45.0
Q ss_pred CCchhhhhhhhccCC--------CCCceeeeeeeeCCCCcc--hhhhhhhhcCceeeeEecCceeEEEEcCCCCceeEee
Q 029792 30 PWPERFHALTYKNLS--------SDGLQIAHQWYDWPRGRN--VYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVH 99 (188)
Q Consensus 30 ~WP~qFHa~l~~nl~--------~G~l~~~dl~YDwp~gRn--~niIq~Ql~~~lyd~Ew~NgTsfy~~l~~~~~Cr~~~ 99 (188)
+=|+++-..+|-|+. ++ ++|-|||||.... ...+...-|++-+ |.++.|-|....+.=..+.
T Consensus 54 ~RPe~vA~~lYGdp~ldWiiLm~Nn---I~D~y~~Wp~s~~~l~~~v~~kY~~~~~-----~~vhh~et~e~~~~~~~V~ 125 (193)
T PF11246_consen 54 ERPEQVAYRLYGDPQLDWIILMINN---IYDPYYDWPKSQEDLYQYVEQKYGNPGG-----NQVHHHETNEGEKYNNLVE 125 (193)
T ss_pred CCHHHHHHHHhCCccceeeeeeecC---CcchhhcCCCCHHHHHHHHHHHhCCccc-----ccceeeeeccccccCCeEe
Confidence 347888888886632 33 6799999997655 4455555566644 6777888744334455566
Q ss_pred cCcCC-CCCCc
Q 029792 100 YGIGI-PRPDF 109 (188)
Q Consensus 100 ~~vGi-L~PdW 109 (188)
.+.|+ .-.|+
T Consensus 126 ~p~g~~v~~~~ 136 (193)
T PF11246_consen 126 YPEGIIVWYDF 136 (193)
T ss_pred cCCCccccccc
Confidence 66663 33444
No 12
>COG3308 Predicted membrane protein [Function unknown]
Probab=23.18 E-value=43 Score=27.69 Aligned_cols=30 Identities=37% Similarity=0.650 Sum_probs=26.6
Q ss_pred cchhhHHHHHHHhhhceeeecCCCCCCCCc
Q 029792 3 LNLSSIISLIILALPWLQFCETVPVPTPWP 32 (188)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~P~~WP 32 (188)
|-++|+|.||++.+++=...+|-+.-.+|=
T Consensus 18 lalgs~iaLi~liL~weL~lap~~~~~swl 47 (131)
T COG3308 18 LALGSLIALIILILSWELWLAPLRPGGSWL 47 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHcCcCCCCChHH
Confidence 457899999999999999999988888886
No 13
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=21.77 E-value=56 Score=29.66 Aligned_cols=16 Identities=38% Similarity=0.760 Sum_probs=13.9
Q ss_pred CceeeEEEEEeCcccC
Q 029792 154 GISVHVMTFEVGAVLH 169 (188)
Q Consensus 154 G~~~hVmtFevG~vle 169 (188)
.|-.|+||||.|++|+
T Consensus 181 Dmhv~ivsFePGa~ip 196 (264)
T COG3257 181 DMHVHIVSFEPGASIP 196 (264)
T ss_pred ceEEEEEEecCCcccc
Confidence 5778999999999875
No 14
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=20.58 E-value=65 Score=25.27 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHhhhceeeecCCCCCCCCchhhhhhhhccCCCCCceeeeeeeeCCCCc-chhhhhhhh-------cCceeee
Q 029792 11 LIILALPWLQFCETVPVPTPWPERFHALTYKNLSSDGLQIAHQWYDWPRGR-NVYIIQKQL-------SDLLYNV 77 (188)
Q Consensus 11 ~~~~~~~~~~~~~~~p~P~~WP~qFHa~l~~nl~~G~l~~~dl~YDwp~gR-n~niIq~Ql-------~~~lyd~ 77 (188)
++.++|.-..|....|.|||=| +.||.-...-.+.+||.+-.=. =+++ +.+-++.+| |-..|-+
T Consensus 12 ~~~l~LS~~s~~~~~p~~~p~~-~~~A~eI~~~qa~~lq~iGtVS--vs~~gsp~d~~~~La~KAda~GA~yYrI 83 (104)
T PRK14864 12 LLTLLLSACSALQGTPQPAPPP-ADHAQEIRRAQTQGLQKMGTVS--ALVRGSPDDAEREIQAKANAAGADYYVI 83 (104)
T ss_pred HHHHHHhhhhhcccCCCCCCCc-cccceecCHHHhhCCceeeEEE--EecCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3344444455555555555534 8888866432234454442221 1123 578888888 5677753
Done!