Query 029792
Match_columns 188
No_of_seqs 53 out of 55
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m4w_A Sigma-E factor regulato 64.2 54 0.0018 27.9 9.9 125 44-170 28-173 (295)
2 3bmz_A Putative uncharacterize 55.6 10 0.00035 31.7 3.7 73 101-174 106-188 (199)
3 3buu_A Uncharacterized LOLA su 52.1 42 0.0014 25.9 6.6 42 112-153 116-165 (229)
4 3bk5_A Putative outer membrane 48.1 51 0.0017 25.7 6.6 51 112-162 125-185 (237)
5 3hrd_A Nicotinate dehydrogenas 15.0 79 0.0027 28.0 2.3 25 142-166 257-289 (425)
6 2yzy_A Putative uncharacterize 12.0 4.8E+02 0.016 20.2 5.9 64 112-175 116-190 (200)
7 1bmw_A PHL P II, pollen allerg 11.4 88 0.003 22.7 1.3 17 102-118 79-95 (96)
8 1rm6_A 4-hydroxybenzoyl-COA re 11.3 1.2E+02 0.0042 28.9 2.6 24 143-166 265-296 (769)
9 3nvz_C Xanthine dehydrogenase/ 11.2 1.2E+02 0.0041 29.0 2.5 25 142-166 248-280 (755)
10 3s79_A Cytochrome P450 19A1; o 10.8 84 0.0029 26.1 1.1 10 24-33 46-55 (503)
No 1
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=64.24 E-value=54 Score=27.91 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCCCceeeeeeeeCCCCcchhhhhhhhcCceeeeEecCceeEEEEcCCCCceeEeec-CcCCCCCC---ccc------cc
Q 029792 44 SSDGLQIAHQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGSCDVVHY-GIGIPRPD---FLD------GA 113 (188)
Q Consensus 44 ~~G~l~~~dl~YDwp~gRn~niIq~Ql~~~lyd~Ew~NgTsfy~~l~~~~~Cr~~~~-~vGiL~Pd---WL~------gA 113 (188)
.+++++...+.--..+|.-+..|...-|.+ -.+.-.|+...||.++ .+.+.+... .++.+++- .++ ..
T Consensus 28 ~~~~i~s~ri~H~~~~~~~~e~L~~LdG~~-reviR~~~~v~~~~p~-~~~~~~~~~~~~~~~p~~l~~~~~~l~~~Y~~ 105 (295)
T 3m4w_A 28 NKQGVESLRYRHARLDNRPLAQLLQMDGPR-REVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDF 105 (295)
T ss_dssp ETTEEEEEEEEEEECSSSEEEEEEECSSSC-CEEEEETTEEEEECTT-SCCEEEECSSCTTSSCGGGGCCHHHHTTTEEE
T ss_pred eCCeEEEEEEEEEeeCCEEEEEEEEcCCCc-EEEEEECCEEEEEcCC-CceEEEecccccccCccccccChhHHhhCceE
Confidence 356677666665566666666555444433 3344456677777744 446665544 33443322 221 56
Q ss_pred eecceeeeCceeeeecc---ccCc---EEEEEeeccCCceEeeecC--Cce---eeEEEEEeCcccCC
Q 029792 114 TYLGTRFTDGFLCNLWE---KLDF---IWYYEDVQTKKPVRWDFSD--GIS---VHVMTFEVGAVLHD 170 (188)
Q Consensus 114 ~YlG~~~v~G~~C~vW~---K~df---i~Yyedv~T~rPV~W~F~~--G~~---~hVmtFevG~vleD 170 (188)
+.+|++.++|..|.+=+ |.++ ...|=|.+|+.|+|..+++ |.. .-+..++++..+++
T Consensus 106 ~~~g~erVaGr~~~vv~l~PkD~~ry~y~lWiD~et~lpLk~e~~d~~G~lleq~~~~~l~~~~~i~~ 173 (295)
T 3m4w_A 106 ISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISS 173 (295)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCSCEEEEEEETTTCCEEEEEEECTTSCEEEEEEEEEEEEESSCCH
T ss_pred EEcCceEECCeEEEEEEEEECCCCceeEEEEEEccCCCEEEEEEEcCCCCEEEEEEEEEEEeCCCcch
Confidence 78999999999999987 4442 2669999999999999885 533 33456667765443
No 2
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=55.57 E-value=10 Score=31.70 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=50.4
Q ss_pred CcCCCCCCcc--ccceecceeeeCceeeeecc--ccC--cEEEEEeeccCCceEeeecC-CceeeEEEE---EeCcccCC
Q 029792 101 GIGIPRPDFL--DGATYLGTRFTDGFLCNLWE--KLD--FIWYYEDVQTKKPVRWDFSD-GISVHVMTF---EVGAVLHD 170 (188)
Q Consensus 101 ~vGiL~PdWL--~gA~YlG~~~v~G~~C~vW~--K~d--fi~Yyedv~T~rPV~W~F~~-G~~~hVmtF---evG~vleD 170 (188)
-+=+|+.+=| -+|.|.|+++|=|..-..|- +.+ -..||-+.+|.++||=+==+ -..+.|=.| .+|. |+|
T Consensus 106 heLfLpq~vL~~~~Ar~~Gr~tVLG~~ad~W~~qRpgK~ps~~Yl~ag~n~llRMvTGd~~~~~SvRDFPNf~~~~-I~~ 184 (199)
T 3bmz_A 106 AELFLPRDVLRRLGARHIGRRVVLGREADGWRYQRPGKGPSTLYLDAASGTPLRMVTGDEASRASLRDFPNVSEAE-IPD 184 (199)
T ss_dssp CSCSSCTTHHHHTTCEEEEEEEETTEEEEEEEEEETTTEEEEEEEETTTCCEEEEEEEETTTEEEEEECTTCBCSC-CCG
T ss_pred HHHhccHHHHHhccccccceeeeeccccceeeeecCCCCCeeEEEEcCCCeEEEEecCCchhhchhhcCCcccccc-CcH
Confidence 3448899888 39999999999999999995 222 47999999999999944222 233344333 3333 455
Q ss_pred CCCc
Q 029792 171 PLIQ 174 (188)
Q Consensus 171 ~~wq 174 (188)
+.|+
T Consensus 185 ~vF~ 188 (199)
T 3bmz_A 185 AVFA 188 (199)
T ss_dssp GGGC
T ss_pred hhhc
Confidence 5554
No 3
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=52.06 E-value=42 Score=25.88 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=34.1
Q ss_pred cceecceeeeCceeeeecc---ccC---c--EEEEEeeccCCceEeeecC
Q 029792 112 GATYLGTRFTDGFLCNLWE---KLD---F--IWYYEDVQTKKPVRWDFSD 153 (188)
Q Consensus 112 gA~YlG~~~v~G~~C~vW~---K~d---f--i~Yyedv~T~rPV~W~F~~ 153 (188)
..+++|++.++|..|.|=+ |.+ + +.+|=|..|..|++-.+++
T Consensus 116 ~~~l~g~~~v~g~~~~vl~~~pk~~~~~y~k~~lwiD~~t~~p~k~~~~d 165 (229)
T 3buu_A 116 HPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYS 165 (229)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEEEEEC
T ss_pred ceEEeeeeeeCCeeEEEEEEEecCCCCceEEEEEEEECCCCcEEEEEEEc
Confidence 4578999999999998876 222 2 6789999999999988774
No 4
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=48.14 E-value=51 Score=25.70 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=38.2
Q ss_pred cceecceeeeCceeeeecc---ccC-----cEEEEEeeccCCceEeeecC--CceeeEEEE
Q 029792 112 GATYLGTRFTDGFLCNLWE---KLD-----FIWYYEDVQTKKPVRWDFSD--GISVHVMTF 162 (188)
Q Consensus 112 gA~YlG~~~v~G~~C~vW~---K~d-----fi~Yyedv~T~rPV~W~F~~--G~~~hVmtF 162 (188)
..+++|++.++|..|.|=+ |.+ -+.+|=|..|..|++-.+++ |...-+++|
T Consensus 125 ~~~l~g~~~~~g~~~~vl~~~pk~~~~~y~k~~~wiD~~t~~~~k~~~~d~~G~l~~~~~~ 185 (237)
T 3bk5_A 125 RFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKAHYRPLKVEFYDRKGALLKTLTF 185 (237)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEETTTCCEEEEEEEETTSCEEEEEEE
T ss_pred ceEEeeeeEECCeeEEEEEEEECCCCCCceEEEEEEECCCCeEEEEEEEcCCCCEEEEEEE
Confidence 4688999999999998876 222 15789999999999988874 543343433
No 5
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=15.04 E-value=79 Score=27.96 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=17.1
Q ss_pred ccCCceEeeec-------C-CceeeEEEEEeCc
Q 029792 142 QTKKPVRWDFS-------D-GISVHVMTFEVGA 166 (188)
Q Consensus 142 ~T~rPV~W~F~-------~-G~~~hVmtFevG~ 166 (188)
.+||||||.+- + .+..+.+.+++|.
T Consensus 257 ~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~ 289 (425)
T 3hrd_A 257 HTKKPVKMVRSREESTTVSSKRHPMTMHCKTGA 289 (425)
T ss_dssp HHCSCEEEECCHHHHHHHSCBCCCEEEEEEEEE
T ss_pred HhCCCEEEEeehHHHhhhcCCCCCeEEEEEEEE
Confidence 47999999743 2 3455666777776
No 6
>2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.60A {Thermus thermophilus}
Probab=12.02 E-value=4.8e+02 Score=20.19 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=42.3
Q ss_pred cceecceeeeCceeeeecc---ccC----cEEEEEeeccCCceEeeecC--CceeeEEEEE--eCcccCCCCCcc
Q 029792 112 GATYLGTRFTDGFLCNLWE---KLD----FIWYYEDVQTKKPVRWDFSD--GISVHVMTFE--VGAVLHDPLIQA 175 (188)
Q Consensus 112 gA~YlG~~~v~G~~C~vW~---K~d----fi~Yyedv~T~rPV~W~F~~--G~~~hVmtFe--vG~vleD~~wqa 175 (188)
..+++|.+.++|-.|.+=+ |.. -+..|=|..+.+|++-.|++ |...-.|+|. ....|+++.|+-
T Consensus 116 ~~~~~~~e~~~g~~~~~le~~Pk~~~~y~k~~~wvdk~~~~~~k~e~yD~~G~l~k~l~~~~~kn~~l~~~~F~f 190 (200)
T 2yzy_A 116 DLRLEGEVRLPEGMAWKLVGRSKENQGFAAMELYILKADPRPLRFVFLDEKGKVLADLKVVEFKRTNLTEAQLKR 190 (200)
T ss_dssp EEEEEEEEEETTEEEEEEEEEC---CCCSEEEEEEETTTTEEEEEEEECTTSCEEEEEEEEEEEECCCCHHHHTC
T ss_pred eEEEEEEEEeCCccEEEEEEEECCCCceEEEEEEEECCCCeEEEEEEEcCCCCEEEEEEEEeeecCCCCHHHcEE
Confidence 3458899999999998554 221 34667777899999999996 5443345543 155677775543
No 7
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A
Probab=11.36 E-value=88 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.6
Q ss_pred cCCCCCCccccceecce
Q 029792 102 IGIPRPDFLDGATYLGT 118 (188)
Q Consensus 102 vGiL~PdWL~gA~YlG~ 118 (188)
..++|.+|-.|+||-+.
T Consensus 79 ~nViP~~W~~G~ty~~~ 95 (96)
T 1bmw_A 79 DDVVPEKYTIGATYAPE 95 (96)
T ss_dssp SSCSCSSCCSSSCCCC-
T ss_pred eeEeCCCCCCCCEEeCC
Confidence 56999999999999874
No 8
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=11.31 E-value=1.2e+02 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=17.8
Q ss_pred cCCceEeeec--------CCceeeEEEEEeCc
Q 029792 143 TKKPVRWDFS--------DGISVHVMTFEVGA 166 (188)
Q Consensus 143 T~rPV~W~F~--------~G~~~hVmtFevG~ 166 (188)
+||||||.+- ..+....+.+++|.
T Consensus 265 ~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~ 296 (769)
T 1rm6_A 265 AKGTVRLLQTREETFIAHRGRPWTEVKMKIGL 296 (769)
T ss_dssp HTSEEEEECCHHHHHHHCCCBCEEEEEEEEEE
T ss_pred hCCCEEEEecHHHHhhhcCCCCCEEEEEEEEE
Confidence 8999999743 24566677888887
No 9
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=11.16 E-value=1.2e+02 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=17.4
Q ss_pred ccCCceEeeec--------CCceeeEEEEEeCc
Q 029792 142 QTKKPVRWDFS--------DGISVHVMTFEVGA 166 (188)
Q Consensus 142 ~T~rPV~W~F~--------~G~~~hVmtFevG~ 166 (188)
.+||||||.+- ..+..+.+.+++|.
T Consensus 248 ~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~ 280 (755)
T 3nvz_C 248 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVGF 280 (755)
T ss_dssp HHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEE
T ss_pred HhCCCEEEEecHHHHHhhcCCCCceEEEEEEEE
Confidence 47999999743 23556677777776
No 10
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=10.82 E-value=84 Score=26.06 Aligned_cols=10 Identities=20% Similarity=0.271 Sum_probs=7.7
Q ss_pred CCCCCCCCch
Q 029792 24 TVPVPTPWPE 33 (188)
Q Consensus 24 ~~p~P~~WP~ 33 (188)
.+|-|++||-
T Consensus 46 ~pPGP~~~P~ 55 (503)
T 3s79_A 46 SIPGPGYCMG 55 (503)
T ss_dssp CCCSCCCCSS
T ss_pred CCCCCCCCce
Confidence 5688888985
Done!