Query 029792
Match_columns 188
No_of_seqs 53 out of 55
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 05:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029792.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029792hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h8ga_ b.109.1.1 (A:) Choline 41.3 13 0.00092 24.8 3.6 55 80-148 1-57 (95)
2 d1sg1x1 g.24.1.1 (X:2-56) Low 29.0 2.8 0.00021 27.4 -1.4 21 87-108 8-28 (55)
3 d2gdga1 d.80.1.3 (A:1-114) Mic 15.4 29 0.0021 23.5 1.5 23 63-85 80-113 (114)
4 d2acaa1 d.63.1.2 (A:8-181) Put 13.9 32 0.0023 24.1 1.4 30 32-61 15-47 (174)
5 d1ki0a1 g.14.1.1 (A:81-163) Pl 13.2 27 0.0019 22.6 0.7 23 111-133 8-32 (83)
6 d1hfoa_ d.80.1.3 (A:) Micropha 12.9 38 0.0028 22.8 1.5 23 63-85 80-113 (113)
7 d1t3qb2 d.133.1.1 (B:166-786) 12.9 46 0.0033 28.1 2.4 25 142-166 109-141 (621)
8 d1vlba4 d.133.1.1 (A:311-907) 12.7 44 0.0032 28.3 2.2 25 142-166 129-161 (597)
9 d1brta_ c.69.1.12 (A:) Bromope 12.6 44 0.0032 22.3 1.8 17 136-154 15-31 (277)
10 d1rm6a2 d.133.1.1 (A:134-769) 11.3 62 0.0045 27.4 2.7 25 142-166 131-163 (636)
No 1
>d1h8ga_ b.109.1.1 (A:) Choline binding domain of autolysin C-LytA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=41.31 E-value=13 Score=24.75 Aligned_cols=55 Identities=20% Similarity=0.430 Sum_probs=38.1
Q ss_pred cCceeEEEEcCCCCceeEeecCcCCCCCCccc--cceecceeeeCceeeeeccccCcEEEEEeeccCCceE
Q 029792 80 NNGTSFYYTLGENGSCDVVHYGIGIPRPDFLD--GATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPVR 148 (188)
Q Consensus 80 ~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL~--gA~YlG~~~v~G~~C~vW~K~dfi~Yyedv~T~rPV~ 148 (188)
+||.-|||+ +. |.+.=.|.. |..|.=.+ +|.....|.+.+-.|||-+..++..++
T Consensus 1 ~dG~wYy~d-~~-----------G~~~tGw~~i~g~wYyfd~--~G~m~tGw~~~~g~~YYf~~~~G~~~~ 57 (95)
T d1h8ga_ 1 TDGNWYWFD-NS-----------GEMATGWKKIADKWYYFNE--EGAMKTGWVKYKDTWYYLDAKEGAMVS 57 (95)
T ss_dssp CCEEEEEEE-TT-----------CCBCCEEEEETTEEEEECT--TSCBCCEEEEETTEEEEECTTTCCBCC
T ss_pred CCCcEEEEC-CC-----------CCEEEeeEEECCEEEEECC--CCCeEEeEEEECCeEEEEECCCCcEee
Confidence 367777777 22 334445663 55554322 578888999999999999999888776
No 2
>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.05 E-value=2.8 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.6
Q ss_pred EEcCCCCceeEeecCcCCCCCC
Q 029792 87 YTLGENGSCDVVHYGIGIPRPD 108 (188)
Q Consensus 87 ~~l~~~~~Cr~~~~~vGiL~Pd 108 (188)
|+ .+..+|..+..+.|+.+|=
T Consensus 8 yt-~sGeCCs~C~~GeGV~~pC 28 (55)
T d1sg1x1 8 YT-HSGECCKACNLGEGVAQPC 28 (55)
T ss_dssp BC-TTSCBCCCBCTTEEEEECS
T ss_pred cc-cCCceeccCCCCCceeecc
Confidence 44 5677999999999999884
No 3
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.38 E-value=29 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=15.6
Q ss_pred hhhhhhhhc---Ccee----eeE---e-cCceeE
Q 029792 63 VYIIQKQLS---DLLY----NVE---W-NNGTSF 85 (188)
Q Consensus 63 ~niIq~Ql~---~~ly----d~E---w-~NgTsf 85 (188)
.++|+.+|| +..| |++ | .|||+|
T Consensus 80 ~~~l~~~LgI~~~RiyI~f~d~~~~~~G~nG~TF 113 (114)
T d2gdga1 80 CGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 113 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHhCCCcceEEEEEEECCHHHeeECcEeC
Confidence 456888986 3444 554 7 788876
No 4
>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=13.86 E-value=32 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=19.8
Q ss_pred chhhhhhhhccCC---CCCceeeeeeeeCCCCc
Q 029792 32 PERFHALTYKNLS---SDGLQIAHQWYDWPRGR 61 (188)
Q Consensus 32 P~qFHa~l~~nl~---~G~l~~~dl~YDwp~gR 61 (188)
|+.+++++-..-. .+..+..|.|||.|+++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~q~d~Yfd~p~~~ 47 (174)
T d2acaa1 15 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRT 47 (174)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCH
T ss_pred HHHHHHHHHHcCCccccceEEEEEEEEECCCCc
Confidence 4567777764321 23456679999999763
No 5
>d1ki0a1 g.14.1.1 (A:81-163) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.17 E-value=27 Score=22.64 Aligned_cols=23 Identities=30% Similarity=0.746 Sum_probs=19.5
Q ss_pred ccceecceeee--CceeeeeccccC
Q 029792 111 DGATYLGTRFT--DGFLCNLWEKLD 133 (188)
Q Consensus 111 ~gA~YlG~~~v--~G~~C~vW~K~d 133 (188)
.|+.|.|+..+ +|..|--|....
T Consensus 8 ~G~~YrG~~s~T~sG~~C~~W~~~~ 32 (83)
T d1ki0a1 8 NGKNYRGTMSKTKNGITCQKWSSTS 32 (83)
T ss_dssp TCTTCCCCCCBCTTSCBBCCTTCCS
T ss_pred CCCCCeecceeCCCCCccCCCccCC
Confidence 48999999865 999999998754
No 6
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=12.92 E-value=38 Score=22.78 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=15.1
Q ss_pred hhhhhhhhc---Ccee----eeE---e-cCceeE
Q 029792 63 VYIIQKQLS---DLLY----NVE---W-NNGTSF 85 (188)
Q Consensus 63 ~niIq~Ql~---~~ly----d~E---w-~NgTsf 85 (188)
.++|+.+|| +..| |++ | .|||+|
T Consensus 80 ~~~l~~~LgI~~~RiyI~f~d~~~~~~G~nG~TF 113 (113)
T d1hfoa_ 80 FDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113 (113)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHcCCCcceEEEEEEECCHHHeeeCCCcC
Confidence 556888886 3444 454 6 788876
No 7
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=12.92 E-value=46 Score=28.09 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=16.6
Q ss_pred ccCCceEeeec--------CCceeeEEEEEeCc
Q 029792 142 QTKKPVRWDFS--------DGISVHVMTFEVGA 166 (188)
Q Consensus 142 ~T~rPV~W~F~--------~G~~~hVmtFevG~ 166 (188)
.|||||||.+- ..+....+++++|.
T Consensus 109 ~~grPVkl~~sR~E~~~~~~~r~~~~~~~~~g~ 141 (621)
T d1t3qb2 109 ALGRPVRWIEDRQENFLGATHAKQQRNEMGLAF 141 (621)
T ss_dssp HHTSCEEEECCHHHHHHHSCBBCCEEEEEEEEE
T ss_pred HhCCCEEEEechHHHhccCCCCCcchhhhcccc
Confidence 48999999642 23455566777765
No 8
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]}
Probab=12.69 E-value=44 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=17.1
Q ss_pred ccCCceEeeec--------CCceeeEEEEEeCc
Q 029792 142 QTKKPVRWDFS--------DGISVHVMTFEVGA 166 (188)
Q Consensus 142 ~T~rPV~W~F~--------~G~~~hVmtFevG~ 166 (188)
.+||||||.+- ..+....|.+++|.
T Consensus 129 ~~grPVk~~~sR~e~~~~~~~r~~~~~~~~~g~ 161 (597)
T d1vlba4 129 ATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAA 161 (597)
T ss_dssp HHSSCEEEECCHHHHHHSSCBCCCEEEEEEEEE
T ss_pred HhCCCceeecchhhhcccccccccEEEEeeeee
Confidence 57999999633 23455567777776
No 9
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]}
Probab=12.65 E-value=44 Score=22.32 Aligned_cols=17 Identities=47% Similarity=0.771 Sum_probs=13.0
Q ss_pred EEEEeeccCCceEeeecCC
Q 029792 136 WYYEDVQTKKPVRWDFSDG 154 (188)
Q Consensus 136 ~Yyedv~T~rPV~W~F~~G 154 (188)
-||++.++|.||= |.+|
T Consensus 15 i~y~~~G~G~~iv--llHG 31 (277)
T d1brta_ 15 LYYEDHGTGQPVV--LIHG 31 (277)
T ss_dssp EEEEEECSSSEEE--EECC
T ss_pred EEEEEEccCCeEE--EECC
Confidence 4899999999974 5544
No 10
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=11.30 E-value=62 Score=27.40 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=16.0
Q ss_pred ccCCceEeeec--------CCceeeEEEEEeCc
Q 029792 142 QTKKPVRWDFS--------DGISVHVMTFEVGA 166 (188)
Q Consensus 142 ~T~rPV~W~F~--------~G~~~hVmtFevG~ 166 (188)
.+||||||.+- ..+....+.+++|.
T Consensus 131 ~~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~ 163 (636)
T d1rm6a2 131 KAKGTVRLLQTREETFIAHRGRPWTEVKMKIGL 163 (636)
T ss_dssp HHTSEEEEECCHHHHHHHCCCBCEEEEEEEEEE
T ss_pred HhCCCceeccchhhhcccccCCCceeeeecccc
Confidence 47899999743 23445556667665
Done!