Query 029795
Match_columns 187
No_of_seqs 203 out of 1000
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14368 LTP_2: Probable lipid 99.6 1.4E-16 3E-21 115.9 1.1 79 28-114 18-96 (96)
2 cd01960 nsLTP1 nsLTP1: Non-spe 99.5 5.7E-15 1.2E-19 107.5 4.5 72 31-109 2-79 (89)
3 cd04660 nsLTP_like nsLTP_like: 99.5 8.1E-15 1.8E-19 103.5 4.5 71 32-114 1-73 (73)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 2.5E-14 5.4E-19 97.4 2.8 62 39-106 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 3.8E-12 8.3E-17 88.7 4.2 62 36-109 3-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 1.4E-10 3.1E-15 79.9 4.6 77 32-114 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.8 3.1E-10 6.8E-15 81.9 -3.6 74 37-114 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 95.6 0.0034 7.3E-08 45.9 0.1 77 32-115 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 95.0 0.028 6.1E-07 41.1 3.3 77 31-114 3-85 (85)
10 PF07172 GRP: Glycine rich pro 90.3 0.21 4.6E-06 37.1 2.2 18 2-19 1-18 (95)
11 cd00261 AAI_SS AAI_SS: Alpha-A 84.8 0.26 5.7E-06 36.5 -0.2 74 37-115 13-109 (110)
12 PF06708 DUF1195: Protein of u 29.9 75 0.0016 25.5 3.5 13 173-185 48-60 (157)
13 PF10731 Anophelin: Thrombin i 27.8 85 0.0018 21.6 3.1 21 2-23 1-21 (65)
14 PRK06287 cobalt transport prot 26.7 65 0.0014 24.3 2.6 19 1-19 1-19 (107)
15 PF06411 HdeA: HdeA/HdeB famil 20.5 49 0.0011 23.9 0.9 14 36-49 30-43 (94)
No 1
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.60 E-value=1.4e-16 Score=115.94 Aligned_cols=79 Identities=33% Similarity=0.733 Sum_probs=49.5
Q ss_pred CCccchhhhhcccccHHHhhCCCCCCcHHHHHHHhhccCCCCCccceeeeccCCCCCcccccCCCChHHHhhccccCCCC
Q 029795 28 TNKECSEYLQKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLK 107 (187)
Q Consensus 28 a~~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~~~~~~~~In~~rA~~LP~~Cgv~ 107 (187)
...+|.+.+....+|+.|++++ ..|+.+||++++++.+.++.|||+++++. ....++||.+|++.||++||++
T Consensus 18 ~~~~c~~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~------~~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 18 CCCSCANSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSP------GAPGFGINVTRALALPAACGVP 90 (96)
T ss_dssp BTTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-C------CHCHHCCTCHHHHHHHHHCTSS
T ss_pred CcchhHHHHhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCcc------ccccCCcCHHHHHHHHHHcCCC
Confidence 3477865444444448998854 68999999999999888999999999742 1346789999999999999999
Q ss_pred CCCCCCC
Q 029795 108 NASTSLC 114 (187)
Q Consensus 108 ~p~~s~C 114 (187)
.++ ++|
T Consensus 91 ~~~-~~C 96 (96)
T PF14368_consen 91 VPP-SKC 96 (96)
T ss_dssp -S-----
T ss_pred CCC-CCC
Confidence 877 777
No 2
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.54 E-value=5.7e-15 Score=107.53 Aligned_cols=72 Identities=26% Similarity=0.565 Sum_probs=59.6
Q ss_pred cchhhhhcccccHHHhhCCCCCCcHHHHHHHhhccCC-----CCCccceeeeccCCCCCcccccC-CCChHHHhhccccC
Q 029795 31 ECSEYLQKTMACLDFARGKITTPSKECCSAVKGIKDD-----DPKCLCYIIKEANGGEGDMVKNL-GVQVPKLLQLPSAC 104 (187)
Q Consensus 31 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~alk~v~~~-----~~~CLC~~i~~~~~~~~~~~~~~-~In~~rA~~LP~~C 104 (187)
+|.+++..|.||++|++++...|+++||++++++++. +.+|+|..+++. ...+ +||.+|+++||++|
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~-------~~~~~~i~~~~a~~LP~~C 74 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA-------AAGISGLNPGRAAGLPGKC 74 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhccccc-------ccccCCCCHHHHHhChHhc
Confidence 6999999999999999988788999999999998754 345777666642 2344 49999999999999
Q ss_pred CCCCC
Q 029795 105 QLKNA 109 (187)
Q Consensus 105 gv~~p 109 (187)
|++.+
T Consensus 75 ~v~~~ 79 (89)
T cd01960 75 GVSIP 79 (89)
T ss_pred ccCCC
Confidence 99975
No 3
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.53 E-value=8.1e-15 Score=103.46 Aligned_cols=71 Identities=30% Similarity=0.577 Sum_probs=58.7
Q ss_pred chhhhhcccccHHHhhCCC--CCCcHHHHHHHhhccCCCCCccceeeeccCCCCCcccccCCCChHHHhhccccCCCCCC
Q 029795 32 CSEYLQKTMACLDFARGKI--TTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLKNA 109 (187)
Q Consensus 32 C~~~l~~L~pCl~yvtg~~--~~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~~~~~~~~In~~rA~~LP~~Cgv~~p 109 (187)
|+.++..|.+|++|+++++ ..|+..||+++|++ +..|+|.+++.. ....||.+||++||++||++++
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~--------~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL--------VLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC--------cccccCHHHHHHHHHHcCCCCC
Confidence 5667789999999999875 46999999999985 466999987531 1225999999999999999988
Q ss_pred CCCCC
Q 029795 110 STSLC 114 (187)
Q Consensus 110 ~~s~C 114 (187)
+ ++|
T Consensus 70 ~-~~C 73 (73)
T cd04660 70 P-SSC 73 (73)
T ss_pred C-CCC
Confidence 8 887
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.46 E-value=2.5e-14 Score=97.37 Aligned_cols=62 Identities=37% Similarity=0.852 Sum_probs=53.1
Q ss_pred ccccHHHhhCCCCCCcHHHHHHHhhccCCCCCccceeeeccCCCCCcccccCCC-ChHHHhhccccCCC
Q 029795 39 TMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGV-QVPKLLQLPSACQL 106 (187)
Q Consensus 39 L~pCl~yvtg~~~~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~~~~~~~~I-n~~rA~~LP~~Cgv 106 (187)
|.||++|++++...|+.+||++++++.+.++.|||+++++.. ....++ |.++++.||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~------~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPG------ASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCcc------ccccCcccHHHHHhchHhcCC
Confidence 679999999887789999999999999889999999998642 122345 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.27 E-value=3.8e-12 Score=88.72 Aligned_cols=62 Identities=26% Similarity=0.515 Sum_probs=51.8
Q ss_pred hhcccccHHHhhCCCCCCcHHHHHHHhhccCCCCCccceeeeccCCCCCcccccCCCChHHHhhccccCCCCCC
Q 029795 36 LQKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLKNA 109 (187)
Q Consensus 36 l~~L~pCl~yvtg~~~~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~~~~~~~~In~~rA~~LP~~Cgv~~p 109 (187)
..+|.+|++|++++ .+||.+||+.||+. ..|||.|+++. .+ ...||.++|++||++||++.|
T Consensus 3 ~~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~----~~CLC~y~~~p------~l-~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 3 PTQLSPCLPAILGG-SPPSAACCAKLKEQ----QSCLCQYAKNP------SL-KQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhhcccCHHHHhCC-CCCCHHHHHHHhcC----CCCeeeeecCc------cH-HhhcCcHHHHHHHHHcCCCCC
Confidence 45899999999976 58999999999973 48999999742 22 335999999999999999876
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.08 E-value=1.4e-10 Score=79.94 Aligned_cols=77 Identities=30% Similarity=0.683 Sum_probs=58.7
Q ss_pred chhhhhcccccHHHhhCC--CCCCcHHHHHHHhhccCCCCCccceeeeccCCCCCcccccCCCChHHHhhccccCCCCCC
Q 029795 32 CSEYLQKTMACLDFARGK--ITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPSACQLKNA 109 (187)
Q Consensus 32 C~~~l~~L~pCl~yvtg~--~~~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~~~~~~~~In~~rA~~LP~~Cgv~~p 109 (187)
|...+.++.+|++|+++. ...|+.+||++|+++. +..|+|.+++....+. .....++..++..||+.||+..+
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~---~~~~~~~~~~a~~lp~~C~~~~~ 75 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGI---LEIPGVNAQNAASLPSACGVPPP 75 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccc---cchhhhhHHHHHhhHHhcCCCCC
Confidence 667788888999999986 4689999999999995 6889999887532110 00002699999999999999865
Q ss_pred CCCCC
Q 029795 110 STSLC 114 (187)
Q Consensus 110 ~~s~C 114 (187)
+ +.|
T Consensus 76 ~-~~C 79 (79)
T smart00499 76 Y-TDC 79 (79)
T ss_pred C-CCC
Confidence 3 444
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.75 E-value=3.1e-10 Score=81.88 Aligned_cols=74 Identities=23% Similarity=0.579 Sum_probs=54.9
Q ss_pred hcccccHHHhhCCCCCCcHHHHHHHhhccCCCCCccceeeeccCCCCC----cccccCCCChHHHhhccccCCCCCCCCC
Q 029795 37 QKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEG----DMVKNLGVQVPKLLQLPSACQLKNASTS 112 (187)
Q Consensus 37 ~~L~pCl~yvtg~~~~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~----~~~~~~~In~~rA~~LP~~Cgv~~p~~s 112 (187)
..+.+|..|++++...|+.+||++|+++ ++.|+|..++....+.. ..-...+++..+|..||+.||+..+. .
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~-~ 88 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY-T 88 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS-S
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC-C
Confidence 4489999999987668999999999999 58999999875321000 00001368999999999999998654 3
Q ss_pred CC
Q 029795 113 LC 114 (187)
Q Consensus 113 ~C 114 (187)
+|
T Consensus 89 ~C 90 (90)
T PF00234_consen 89 DC 90 (90)
T ss_dssp -G
T ss_pred CC
Confidence 55
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=95.60 E-value=0.0034 Score=45.89 Aligned_cols=77 Identities=32% Similarity=0.566 Sum_probs=51.6
Q ss_pred chhhhhcccccHHHhh----CCCCCCcHHHHHHHhhccCCCC-CccceeeeccCCCCCccccc-CCCChHH-HhhccccC
Q 029795 32 CSEYLQKTMACLDFAR----GKITTPSKECCSAVKGIKDDDP-KCLCYIIKEANGGEGDMVKN-LGVQVPK-LLQLPSAC 104 (187)
Q Consensus 32 C~~~l~~L~pCl~yvt----g~~~~Ps~~CC~alk~v~~~~~-~CLC~~i~~~~~~~~~~~~~-~~In~~r-A~~LP~~C 104 (187)
|.-+..+|--|.+.+. .-+..+..+||.-++++.+.+. .|||..+|.. ..+ .++|... ...|-..|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~-------vlg~i~~~ipv~l~~lln~C 74 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN-------VLGLINVNIPVALNLLLNAC 74 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh-------cccccccccccHHHHHHHHh
Confidence 4444557788888881 1124578999999999987654 6999988731 123 3333433 33567889
Q ss_pred CCCCCCCCCCC
Q 029795 105 QLKNASTSLCP 115 (187)
Q Consensus 105 gv~~p~~s~C~ 115 (187)
|...|+..+|+
T Consensus 75 Gk~~p~gf~C~ 85 (85)
T PF14547_consen 75 GKTVPSGFTCP 85 (85)
T ss_pred CCcCcCCCcCC
Confidence 98878777884
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=94.97 E-value=0.028 Score=41.11 Aligned_cols=77 Identities=25% Similarity=0.495 Sum_probs=51.7
Q ss_pred cchhhhhcccccHHHhhCC----CCCCcHHHHHHHhhccCCCC-CccceeeeccCCCCCcccccCCCChHHHh-hccccC
Q 029795 31 ECSEYLQKTMACLDFARGK----ITTPSKECCSAVKGIKDDDP-KCLCYIIKEANGGEGDMVKNLGVQVPKLL-QLPSAC 104 (187)
Q Consensus 31 ~C~~~l~~L~pCl~yvtg~----~~~Ps~~CC~alk~v~~~~~-~CLC~~i~~~~~~~~~~~~~~~In~~rA~-~LP~~C 104 (187)
.|--+..+|--|.+-+..- +..|..+||.-++.+.+.+. .|||..+|.. ..++.+|....+ .|-..|
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan-------~lgi~~~~pv~l~llln~C 75 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN-------ILGISINIPVALSLLLNSC 75 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc-------ccCcccccChhHHHHHHHH
Confidence 4665556777888877421 24677999999999987754 6999988731 233334444444 445679
Q ss_pred CCCCCCCCCC
Q 029795 105 QLKNASTSLC 114 (187)
Q Consensus 105 gv~~p~~s~C 114 (187)
|-..|+.++|
T Consensus 76 Gk~~P~gf~C 85 (85)
T cd01958 76 GRNVPPGFTC 85 (85)
T ss_pred cCcCCCCCcC
Confidence 9887776666
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.29 E-value=0.21 Score=37.09 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.5
Q ss_pred CcchhHHHHHHHHHHHHH
Q 029795 2 MGMKKGFLCGILFGFIAL 19 (187)
Q Consensus 2 M~~~~~~~~~lll~~~~~ 19 (187)
|++|.+++|+|+|+++++
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 899999888888876554
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=84.76 E-value=0.26 Score=36.52 Aligned_cols=74 Identities=22% Similarity=0.486 Sum_probs=46.1
Q ss_pred hcccccHHHhhCCC---C-----------CCcHHHHHHHhhccCCCCCccceeeeccCCCCCccc---------ccCCCC
Q 029795 37 QKTMACLDFARGKI---T-----------TPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMV---------KNLGVQ 93 (187)
Q Consensus 37 ~~L~pCl~yvtg~~---~-----------~Ps~~CC~alk~v~~~~~~CLC~~i~~~~~~~~~~~---------~~~~In 93 (187)
..|.+|..|+.... . .....||..|+.+ +..|.|..|........... .....-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 46889999985321 1 1248999999988 47899998864321100000 001123
Q ss_pred hHHHhhccccCCCCCCCCCCCC
Q 029795 94 VPKLLQLPSACQLKNASTSLCP 115 (187)
Q Consensus 94 ~~rA~~LP~~Cgv~~p~~s~C~ 115 (187)
...|..||+.||+.. ...|.
T Consensus 90 ~~~a~~Lp~~C~~~~--~~~C~ 109 (110)
T cd00261 90 RQAAQNLPSMCNLYP--PPYCP 109 (110)
T ss_pred HHHHHhhchhcCCCC--CCCCC
Confidence 467889999999984 23564
No 12
>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=29.89 E-value=75 Score=25.53 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=8.2
Q ss_pred HhhhhcccCcccc
Q 029795 173 IFFYAFPTGSASL 185 (187)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (187)
+-+|-..+|++++
T Consensus 48 LAfWSM~tgsvtL 60 (157)
T PF06708_consen 48 LAFWSMFTGSVTL 60 (157)
T ss_pred HHHHHHhheeeEE
Confidence 3445556788875
No 13
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.80 E-value=85 Score=21.65 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=12.3
Q ss_pred CcchhHHHHHHHHHHHHHhhhc
Q 029795 2 MGMKKGFLCGILFGFIALRVVT 23 (187)
Q Consensus 2 M~~~~~~~~~lll~~~~~~~~~ 23 (187)
|++| +|++++|-+.+++.+..
T Consensus 1 MA~K-l~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 1 MASK-LIVIALLCVALVAIVQS 21 (65)
T ss_pred Ccch-hhHHHHHHHHHHHHHhc
Confidence 5666 56667766665554433
No 14
>PRK06287 cobalt transport protein CbiN; Validated
Probab=26.66 E-value=65 Score=24.26 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=12.6
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 029795 1 MMGMKKGFLCGILFGFIAL 19 (187)
Q Consensus 1 ~M~~~~~~~~~lll~~~~~ 19 (187)
||++++++...++++++++
T Consensus 1 ~~~~~~~~~~~~~~all~a 19 (107)
T PRK06287 1 MMDNKKFLIAGLIVALLIA 19 (107)
T ss_pred CCcchhhHHHHHHHHHHHH
Confidence 7888876666666655554
No 15
>PF06411 HdeA: HdeA/HdeB family; InterPro: IPR010486 HNS (histone-like nucleoid structuring)-dependent expression A (HdeA) protein is a stress response protein found in highly acid resistant bacteria such as Shigella flexneri and Escherichia coli, but which is lacking in mildly acid tolerant bacteria such as Salmonella []. HdeA is one of the most abundant proteins found in the periplasmic space of E. coli, where it is one of a network of proteins that confer an acid resistance phenotype essential for the pathogenesis of enteric bacteria []. HdeA is thought to act as a chaperone, functioning to prevent the aggregation of periplasmic proteins denatured under acidic conditions. The HNS protein, a chromatin-associated protein that influences the gene expression of several environmentally-induced target genes, represses the expression of HdeA. HdeB, which is encoded within the same operon, may form heterodimers with HdeA. HdeA is a single domain protein with an overall fold that is similar to the fold of the N-terminal subdomain of the GluRS anticodon-binding domain. ; PDB: 1BG8_C 1DJ8_C 2XUV_C.
Probab=20.53 E-value=49 Score=23.89 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=8.8
Q ss_pred hhcccccHHHhhCC
Q 029795 36 LQKTMACLDFARGK 49 (187)
Q Consensus 36 l~~L~pCl~yvtg~ 49 (187)
-.+-+.|.+|+.-+
T Consensus 30 ~~~~mTC~eFl~ld 43 (94)
T PF06411_consen 30 DPSKMTCKEFLDLD 43 (94)
T ss_dssp SGGG-BHHHHHTS-
T ss_pred CchhCcHHHHHcCC
Confidence 34557899999754
Done!