Query 029796
Match_columns 187
No_of_seqs 106 out of 331
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 1.9E-80 6.4E-85 537.0 16.6 182 5-187 80-261 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 2.7E-80 9.3E-85 535.1 11.3 181 5-186 80-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 2.1E-78 7.2E-83 523.0 18.0 178 5-183 82-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 6.6E-69 2.3E-73 460.6 15.6 159 5-164 81-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 9.4E-66 3.2E-70 433.9 16.3 159 5-170 46-205 (213)
6 2ckk_A KIN17; beta barrel, rib 95.8 0.022 7.4E-07 44.0 6.4 42 81-125 55-96 (127)
7 2do3_A Transcription elongatio 95.5 0.025 8.6E-07 39.8 5.4 46 100-149 18-63 (69)
8 1vq8_T 50S ribosomal protein L 88.2 0.82 2.8E-05 35.1 5.4 56 96-154 39-101 (120)
9 3u5e_Y L33, YL33, 60S ribosoma 85.8 1.2 4E-05 34.6 5.0 39 96-137 46-84 (127)
10 3j21_U 50S ribosomal protein L 84.9 1.2 4.2E-05 34.1 4.8 37 97-136 43-79 (121)
11 1nz9_A Transcription antitermi 84.6 2.7 9.3E-05 27.2 5.8 43 98-142 3-45 (58)
12 3iz5_Y 60S ribosomal protein L 80.1 2.6 8.9E-05 33.5 5.1 55 97-154 46-107 (150)
13 3v2d_Y 50S ribosomal protein L 78.9 1.3 4.5E-05 33.4 2.9 29 98-126 5-33 (110)
14 3r8s_U 50S ribosomal protein L 77.9 2 6.8E-05 32.0 3.6 34 99-136 3-36 (102)
15 2zjr_R 50S ribosomal protein L 76.3 2 6.7E-05 32.6 3.2 36 99-137 15-50 (115)
16 4a17_S RPL26, 60S ribosomal pr 76.0 3.5 0.00012 32.2 4.6 39 96-137 45-83 (135)
17 2ftc_N Mitochondrial ribosomal 75.5 2.8 9.6E-05 30.8 3.8 32 103-137 1-32 (96)
18 2zkr_t 60S ribosomal protein L 73.7 2.1 7.2E-05 33.8 2.9 55 97-154 46-108 (145)
19 4a18_F RPL14; ribosome, eukary 73.7 2.6 9E-05 32.6 3.3 32 100-135 7-38 (126)
20 2wg5_A General control protein 71.7 8.6 0.0003 28.3 5.7 50 59-108 49-104 (109)
21 3iz5_N 60S ribosomal protein L 66.6 3.2 0.00011 32.3 2.5 32 100-135 7-38 (134)
22 2e6z_A Transcription elongatio 66.2 2.4 8.2E-05 28.1 1.5 28 97-124 5-32 (59)
23 4a18_N RPL27, ribosomal protei 60.9 5.7 0.0002 31.3 3.0 26 100-125 5-30 (144)
24 3izc_N 60S ribosomal protein R 59.4 5.3 0.00018 31.3 2.5 32 100-135 15-46 (138)
25 2joy_A 50S ribosomal protein L 58.8 5.5 0.00019 28.9 2.4 51 100-154 4-58 (96)
26 3j21_5 50S ribosomal protein L 58.3 4.8 0.00016 28.7 1.9 25 100-124 4-28 (83)
27 3p8b_B Transcription antitermi 53.2 7.5 0.00026 29.7 2.4 29 98-126 90-118 (152)
28 3lag_A Uncharacterized protein 49.7 36 0.0012 23.7 5.4 59 49-112 17-75 (98)
29 2jvv_A Transcription antitermi 49.3 12 0.00041 29.2 3.1 39 97-136 125-163 (181)
30 2in0_A Endonuclease PI-MTUI; h 46.6 30 0.001 25.4 4.9 26 129-154 53-78 (139)
31 2lcj_A PAB POLC intein; hydrol 44.7 1.1E+02 0.0036 23.7 9.9 66 23-88 46-120 (185)
32 3e0e_A Replication protein A; 42.1 62 0.0021 22.7 5.7 13 99-112 63-75 (97)
33 4f0h_B Ribulose bisphosphate c 40.9 36 0.0012 26.6 4.6 40 21-75 77-124 (138)
34 2iwa_A Glutamine cyclotransfer 37.1 76 0.0026 26.3 6.4 36 63-101 156-191 (266)
35 2ozi_A Hypothetical protein RP 36.1 96 0.0033 21.6 6.0 58 49-111 17-74 (98)
36 3r4d_A CEA-related cell adhesi 33.4 1.1E+02 0.0036 22.0 6.1 66 25-90 64-133 (208)
37 3m9b_A Proteasome-associated A 32.8 77 0.0026 27.0 5.7 61 67-142 117-183 (251)
38 3iuw_A Activating signal coint 31.4 32 0.0011 24.5 2.7 17 72-88 31-47 (83)
39 2hbp_A Cytoskeleton assembly c 29.4 71 0.0024 22.1 4.1 42 24-79 5-46 (68)
40 3bbo_W Ribosomal protein L24; 29.4 6.5 0.00022 32.4 -1.4 26 100-125 69-94 (191)
41 4b2g_A GH3-1 auxin conjugating 27.7 16 0.00054 34.6 0.7 61 21-88 355-421 (609)
42 2kkq_A Myotilin; unknown funct 27.2 1.2E+02 0.0042 20.5 5.2 38 17-54 56-95 (116)
43 2oqk_A Putative translation in 27.2 1.6E+02 0.0056 21.6 6.2 48 40-90 28-82 (117)
44 4eql_A 4-substituted benzoates 27.0 23 0.00077 33.3 1.6 60 21-88 350-409 (581)
45 3dm3_A Replication factor A; p 25.9 1.7E+02 0.0059 20.8 6.0 56 47-108 15-75 (105)
46 1mkh_A Metrs;, C-terminal doma 25.4 97 0.0033 22.4 4.5 18 116-133 14-31 (107)
47 2qf4_A Cell shape determining 25.1 2.3E+02 0.008 21.8 7.0 60 76-155 106-166 (172)
48 2cwp_A Metrs related protein; 25.0 99 0.0034 22.6 4.5 17 116-132 18-34 (112)
49 2cqa_A RUVB-like 2; TIP48, TIP 24.5 1E+02 0.0036 22.4 4.4 38 58-95 33-79 (95)
50 3lwc_A Uncharacterized protein 23.7 1.6E+02 0.0056 20.9 5.5 46 26-88 45-90 (119)
51 2j8h_A Titin, connectin; cardi 23.5 1.5E+02 0.0052 20.9 5.3 38 17-54 45-84 (197)
52 2fqp_A Hypothetical protein BP 23.0 1.7E+02 0.0058 19.4 5.9 13 57-69 45-57 (97)
53 2dm2_A Palladin; beta-sandwich 22.2 81 0.0028 20.8 3.3 36 19-54 51-88 (110)
54 3m86_A Amoebiasin-2; cysteine 22.0 40 0.0014 24.5 1.8 12 80-91 35-46 (111)
55 1pyb_A Methionyl-tRNA syntheta 21.7 95 0.0033 22.6 3.9 18 116-133 18-35 (111)
56 2xhc_A Transcription antitermi 21.7 56 0.0019 28.7 3.0 39 97-136 296-334 (352)
57 4div_S ORF46; distal tail prot 21.2 78 0.0027 25.7 3.6 33 59-94 177-209 (253)
58 1at0_A 17-hedgehog; developmen 21.1 2.6E+02 0.0088 20.8 7.8 25 131-155 54-78 (145)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-80 Score=536.99 Aligned_cols=182 Identities=81% Similarity=1.309 Sum_probs=161.7
Q ss_pred eecccceeEEEEecCCCceEEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCe
Q 029796 5 FSFGTLLTDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT 84 (187)
Q Consensus 5 ~kfPvGlMDVIsI~kt~e~yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DT 84 (187)
++||||||||||||+|||||||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+|||
T Consensus 80 ~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DT 159 (265)
T 3iz6_D 80 KTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDT 159 (265)
T ss_dssp TTCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCE
T ss_pred CCCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEEEeeceEEEEccCCCceEEcc
Q 029796 85 IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 164 (187)
Q Consensus 85 v~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIG~~~~p~IsLp 164 (187)
|+||||++||+|||||++||+||||||+|+|++|+|++|++|+||+++|||+|++|++|+|+++||||||++++||||||
T Consensus 160 v~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp 239 (265)
T 3iz6_D 160 IKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLP 239 (265)
T ss_dssp EEECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCC
T ss_pred EEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCceeeeehhHHHHHHHHHHHhC
Q 029796 165 KGKGIKLSIIEEARKRQAAQAAA 187 (187)
Q Consensus 165 ~~~Gi~~~~~e~~~~~~~~~~~~ 187 (187)
++|||||+++|| |++|++++++
T Consensus 240 ~~kg~~~~~~ee-r~~~~~~~~~ 261 (265)
T 3iz6_D 240 KGKGIKLSIIEE-QRKRDAAAQA 261 (265)
T ss_dssp CCC--------------------
T ss_pred CCCceeeehHHh-HHHHHHHhhh
Confidence 999999999999 9999988753
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=2.7e-80 Score=535.06 Aligned_cols=181 Identities=60% Similarity=1.018 Sum_probs=178.0
Q ss_pred eecccceeEEEEecCCCceEEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCe
Q 029796 5 FSFGTLLTDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT 84 (187)
Q Consensus 5 ~kfPvGlMDVIsI~kt~e~yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DT 84 (187)
++||||||||||||+|||||||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+|||
T Consensus 80 ~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dt 159 (261)
T 3u5c_E 80 TTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDT 159 (261)
T ss_dssp TTCEEETTCEEEETTTTEEEECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCE
T ss_pred CCCCCceEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEEEeeceEEEEccCCCceEEcc
Q 029796 85 IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 164 (187)
Q Consensus 85 v~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIG~~~~p~IsLp 164 (187)
|+||||++||+|||||++||+||||||+|+|++|+|++|++|++|+++|||+|++|++|+|+++||||||++++||||||
T Consensus 160 v~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp 239 (261)
T 3u5c_E 160 VKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLP 239 (261)
T ss_dssp EEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCC
T ss_pred EEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCceeeeehhHHHHHHHHHHHh
Q 029796 165 KGKGIKLSIIEEARKRQAAQAA 186 (187)
Q Consensus 165 ~~~Gi~~~~~e~~~~~~~~~~~ 186 (187)
++|||||+++|| |++|++++.
T Consensus 240 ~~kg~~~~~~ee-r~~~~~~~~ 260 (261)
T 3u5c_E 240 KGKGIKLSIAEE-RDRRRAQQG 260 (261)
T ss_dssp TTTTCCCCHHHH-HHHHTTTTC
T ss_pred CCCceeeehHHh-HHHHHHhcc
Confidence 999999999999 999997764
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=2.1e-78 Score=523.02 Aligned_cols=178 Identities=53% Similarity=0.909 Sum_probs=174.9
Q ss_pred eecccceeEEEEecCCCceEEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCe
Q 029796 5 FSFGTLLTDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT 84 (187)
Q Consensus 5 ~kfPvGlMDVIsI~kt~e~yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DT 84 (187)
++||||||||||||+|||||||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+|||
T Consensus 82 ~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~Dt 161 (260)
T 2xzm_W 82 KGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDT 161 (260)
T ss_dssp TTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTBE
T ss_pred CCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCCe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEEEeeceEEEEccCCCceEEcc
Q 029796 85 IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 164 (187)
Q Consensus 85 v~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIG~~~~p~IsLp 164 (187)
|+||||++||+|||||++||+||||||+|+||+|+|++++++++|+|+|||+|++|++|+|+++||||||++++||||||
T Consensus 162 v~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Islp 241 (260)
T 2xzm_W 162 LKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELP 241 (260)
T ss_dssp EEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCCS
T ss_pred EEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998679999999
Q ss_pred CCceeeeehhHHHHHHHHH
Q 029796 165 KGKGIKLSIIEEARKRQAA 183 (187)
Q Consensus 165 ~~~Gi~~~~~e~~~~~~~~ 183 (187)
+++|||||++|| |++|++
T Consensus 242 ~~kgi~l~i~ee-r~~~~~ 259 (260)
T 2xzm_W 242 SGDGVRETILEE-RKRKFS 259 (260)
T ss_dssp SSSSCCCCHHHH-HHHHTC
T ss_pred CCCCeecchhhh-hhhhhc
Confidence 999999999999 998864
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.6e-69 Score=460.58 Aligned_cols=159 Identities=29% Similarity=0.443 Sum_probs=156.9
Q ss_pred eecccceeEEEEecCCCceEEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeC---CCCccc
Q 029796 5 FSFGTLLTDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKA 81 (187)
Q Consensus 5 ~kfPvGlMDVIsI~kt~e~yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~---d~~ik~ 81 (187)
++|||||||||||++++|+||++||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|| ||.||+
T Consensus 81 ~~ypvG~mDVIsI~kt~e~fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~ 160 (243)
T 3j20_E 81 YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT 160 (243)
T ss_dssp SSCEECTTCEEEETTTTEEEEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSS
T ss_pred ccCCcccceEEEecccCceeEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCeEEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEecCC-ccEEEEEcCCCCeEEEeeceEEEEccCCCce
Q 029796 82 NDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPW 160 (187)
Q Consensus 82 ~DTv~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s-~~~V~i~d~~g~~F~T~~~~vfvIG~~~~p~ 160 (187)
||||+||||++||+|||||++||+||||||+|+|++|+|++|+++++| +++|||+|++|++|+|+++||||||+ ++||
T Consensus 161 ~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~ 239 (243)
T 3j20_E 161 SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPK 239 (243)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSC
T ss_pred CCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCcc
Confidence 999999999999999999999999999999999999999999999988 89999999999999999999999998 9999
Q ss_pred EEcc
Q 029796 161 VSLP 164 (187)
Q Consensus 161 IsLp 164 (187)
||||
T Consensus 240 islp 243 (243)
T 3j20_E 240 ISLP 243 (243)
T ss_dssp CSCC
T ss_pred ccCC
Confidence 9998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=9.4e-66 Score=433.87 Aligned_cols=159 Identities=32% Similarity=0.449 Sum_probs=147.3
Q ss_pred eecccceeEEEEecCCCceEEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCe
Q 029796 5 FSFGTLLTDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT 84 (187)
Q Consensus 5 ~kfPvGlMDVIsI~kt~e~yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DT 84 (187)
++||||||||||| ++|+||++||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+|||
T Consensus 46 ~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dt 123 (213)
T 3kbg_A 46 KKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDV 123 (213)
T ss_dssp TTCEECTTCEEEE--TTEEEEEEECTTSCEEEEECCTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCE
T ss_pred cCCCccceeEEEe--cCceeEEEecCCCcEEEEEeChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCE
Confidence 5899999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEecCC-ccEEEEEcCCCCeEEEeeceEEEEccCCCceEEc
Q 029796 85 IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 163 (187)
Q Consensus 85 v~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s-~~~V~i~d~~g~~F~T~~~~vfvIG~~~~p~IsL 163 (187)
|++|||++||+||+||++||+||||||+|+||+|+|++|+++++| +++||++ ++|+|+++||||||+ ++|||.+
T Consensus 124 v~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~ 198 (213)
T 3kbg_A 124 LAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVL 198 (213)
T ss_dssp EEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-
T ss_pred EEEECCCCceeeEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEe
Confidence 999999999999999999999999999999999999999999999 5999997 679999999999998 7999977
Q ss_pred cCCceee
Q 029796 164 PKGKGIK 170 (187)
Q Consensus 164 p~~~Gi~ 170 (187)
|++.=|.
T Consensus 199 ~p~~~~~ 205 (213)
T 3kbg_A 199 SPEEVIP 205 (213)
T ss_dssp -------
T ss_pred ChHHccc
Confidence 6664443
No 6
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=95.77 E-value=0.022 Score=44.01 Aligned_cols=42 Identities=21% Similarity=0.486 Sum_probs=32.8
Q ss_pred cCCeEEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEE
Q 029796 81 ANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK 125 (187)
Q Consensus 81 ~~DTv~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~ 125 (187)
.++.| .+....+--.+| +.|+.+||..|.|.|..|++.++..
T Consensus 55 ~g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 55 SGDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp TCCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 34555 444444556667 9999999999999999999999954
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=95.52 E-value=0.025 Score=39.81 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=35.3
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeEEEeece
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 149 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~ 149 (187)
|++|+.+-|++|+|.|..|.|..++. .-++.+.|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~----d~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEE----NFVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECS----SCEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeC----CEEEEEeCCCCCEEEEEhHH
Confidence 78999999999999999999999862 24455667777666544433
No 8
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=88.24 E-value=0.82 Score=35.07 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=40.6
Q ss_pred eEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcC-----CCCeEEEe--eceEEEEc
Q 029796 96 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFATR--LGNVFTIG 154 (187)
Q Consensus 96 ~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~-----~g~~F~T~--~~~vfvIG 154 (187)
..+++..|+.+.|+.|+.-|..|+|..+.. ..+.|+||.- +|.+++-. .+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457889999999999999999999999853 3356777655 34344432 46776664
No 9
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=85.75 E-value=1.2 Score=34.60 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=31.4
Q ss_pred eEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029796 96 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 137 (187)
Q Consensus 96 ~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d 137 (187)
-.++...|+.+.|+.|+.-|..|+|..+.... +.|+||.
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk---~~V~VEg 84 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLK---FAVQVDK 84 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGG---TEEEEET
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCC---CEEEEeC
Confidence 35788899999999999999999999985432 4566654
No 10
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.91 E-value=1.2 Score=34.11 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=30.6
Q ss_pred EEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEE
Q 029796 97 FIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 136 (187)
Q Consensus 97 ~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~ 136 (187)
.+++..|+.+.|+.|+.-|..|+|.++... .+.|+||
T Consensus 43 ~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VE 79 (121)
T 3j21_U 43 NLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVE 79 (121)
T ss_dssp EEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEET
T ss_pred ccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEe
Confidence 578899999999999999999999998543 2456665
No 11
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=84.58 E-value=2.7 Score=27.24 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=31.7
Q ss_pred EEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCe
Q 029796 98 IKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 142 (187)
Q Consensus 98 i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~ 142 (187)
++|++|+.+.|+.|.-.|..|+|.++... ...-.|.++ .-|.+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~-k~~v~V~v~-~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPE-RGKVKVMVT-IFGRE 45 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETT-TTEEEEEEE-SSSSE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCC-CCEEEEEEE-eCCCE
Confidence 56899999999999999999999998642 123444453 44443
No 12
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=80.10 E-value=2.6 Score=33.52 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=37.8
Q ss_pred EEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc-----CCCCeEE--EeeceEEEEc
Q 029796 97 FIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 154 (187)
Q Consensus 97 ~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d-----~~g~~F~--T~~~~vfvIG 154 (187)
.+++..|+.+.|+.|+.-|..|+|..+... .+.|+||. .+|.+.+ .-.+||+++-
T Consensus 46 s~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~ 107 (150)
T 3iz5_Y 46 SIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTK 107 (150)
T ss_dssp EEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEE
T ss_pred ccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEc
Confidence 578889999999999999999999998543 24455543 5554333 1234655554
No 13
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=78.95 E-value=1.3 Score=33.39 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=25.5
Q ss_pred EEecCCcEEEEECCCcceeEEEEEEEEEe
Q 029796 98 IKFDVGNIVMVTGGRNRGRVGIIKNREKH 126 (187)
Q Consensus 98 i~fe~G~~~~vtgG~n~G~vG~I~~i~~~ 126 (187)
+++..|+.+.|+.|+.-|..|+|.++...
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 33 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPK 33 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECC
Confidence 46778999999999999999999998653
No 14
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=77.93 E-value=2 Score=31.96 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=27.0
Q ss_pred EecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEE
Q 029796 99 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 136 (187)
Q Consensus 99 ~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~ 136 (187)
++..|+.+.|+.|+.-|..|+|.++... +.|++|
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT----TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEe
Confidence 4567999999999999999999998542 445554
No 15
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=76.29 E-value=2 Score=32.57 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=29.8
Q ss_pred EecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029796 99 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 137 (187)
Q Consensus 99 ~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d 137 (187)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|++|.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 788899999999999999999999853 235677764
No 16
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=76.04 E-value=3.5 Score=32.23 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=30.6
Q ss_pred eEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029796 96 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 137 (187)
Q Consensus 96 ~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d 137 (187)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+||.
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEg 83 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRK---KWAIHVEK 83 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETT
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcC---CCEEEEeC
Confidence 3567889999999999999999999988532 24566543
No 17
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=75.51 E-value=2.8 Score=30.77 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=24.7
Q ss_pred CcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 029796 103 GNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 137 (187)
Q Consensus 103 G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d 137 (187)
|+.++|+.|+.-|..|+|.++.... +.|++|.
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~---~~ViVeG 32 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQR---NWVVVGG 32 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCC---CEEEEeC
Confidence 7889999999999999999986432 3455543
No 18
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=73.68 E-value=2.1 Score=33.79 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.5
Q ss_pred EEEecCCcEEEEECCCcceeE-EEEEEEEEecCCccEEEEEcCC-----CCeEEE--eeceEEEEc
Q 029796 97 FIKFDVGNIVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFAT--RLGNVFTIG 154 (187)
Q Consensus 97 ~i~fe~G~~~~vtgG~n~G~v-G~I~~i~~~~~s~~~V~i~d~~-----g~~F~T--~~~~vfvIG 154 (187)
.+++..|+.+.|+.|+.-|.. |+|..+.. ..+.|+|+.-+ |.+.+- -.+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 367889999999999999999 99999853 23556665433 433332 246666664
No 19
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=73.66 E-value=2.6 Score=32.56 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=27.2
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEE
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 135 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i 135 (187)
.|+|-.|++..|+++|+.++|++|..+ +.|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999653 45655
No 20
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=71.67 E-value=8.6 Score=28.32 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCeeEEEccCceEEeeC-----C-CCcccCCeEEEecCCCeeeeEEEecCCcEEEE
Q 029796 59 KGIPYINTYDGRTIRYP-----D-PLIKANDTIKLDLEENKITDFIKFDVGNIVMV 108 (187)
Q Consensus 59 gg~~ql~~hDGrni~~~-----d-~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v 108 (187)
+++..+.+..|+++.++ | ..+++|++|-++-.+..|++.+|.+.+..+.+
T Consensus 49 ~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 49 DGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp TSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred CCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 34555666778886443 3 36999999999998999999999999887653
No 21
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=66.60 E-value=3.2 Score=32.32 Aligned_cols=32 Identities=19% Similarity=0.467 Sum_probs=26.6
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEE
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 135 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i 135 (187)
.|+|-+|++..|+++|+..+|++|..+ +-|.|
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~----~rvLV 38 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ----NRALV 38 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC----CeEEE
Confidence 478999999999999999999998543 34555
No 22
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.16 E-value=2.4 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.4
Q ss_pred EEEecCCcEEEEECCCcceeEEEEEEEE
Q 029796 97 FIKFDVGNIVMVTGGRNRGRVGIIKNRE 124 (187)
Q Consensus 97 ~i~fe~G~~~~vtgG~n~G~vG~I~~i~ 124 (187)
...|++|+.+-|+.|.=.|..|+|.++.
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 3568999999999999999999999985
No 23
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=60.94 E-value=5.7 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.7
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEE
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREK 125 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~ 125 (187)
+++|..|++..|+++|+-++|..+..
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD 30 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSE 30 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEES
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecC
Confidence 57899999999999999999998755
No 24
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=59.45 E-value=5.3 Score=31.28 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=26.7
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEE
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 135 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i 135 (187)
.++|-+|++..|++.|+..+|++|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 478999999999999999999998542 45655
No 25
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=58.78 E-value=5.5 Score=28.90 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=33.7
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCC----CCeEEEeeceEEEEc
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAL----GHEFATRLGNVFTIG 154 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~----g~~F~T~~~~vfvIG 154 (187)
+++|-.|++..|++.|+..+|.++.. .+.|.+-|.. -..-.....++....
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD----~~~vLV~gp~~~~~~~rk~~n~khl~~T~ 58 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID----DNFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS----SSCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC----CCEEEEECCcccCCcCCEEEchHHEEEee
Confidence 57899999999999999999998732 1345554432 122344455555444
No 26
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.27 E-value=4.8 Score=28.69 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEE
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNRE 124 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~ 124 (187)
+++|.+|++..|+..|+..+|.++.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~ii 28 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDII 28 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEc
Confidence 5789999999999999999999873
No 27
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=53.18 E-value=7.5 Score=29.65 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.3
Q ss_pred EEecCCcEEEEECCCcceeEEEEEEEEEe
Q 029796 98 IKFDVGNIVMVTGGRNRGRVGIIKNREKH 126 (187)
Q Consensus 98 i~fe~G~~~~vtgG~n~G~vG~I~~i~~~ 126 (187)
..|++|+.+-|+.|.-.|..|+|.++...
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 56899999999999999999999999643
No 28
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=49.69 E-value=36 Score=23.69 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=40.9
Q ss_pred EEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCeEEEecCCCeeeeEEEecCCcEEEEECCC
Q 029796 49 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 112 (187)
Q Consensus 49 cKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~vtgG~ 112 (187)
+||...+.-+|+.+-++.|..+...+ +=+.-++.+.+++++. ..+.+.+|...++--|.
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~----~v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~ 75 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV 75 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC
T ss_pred EEEEEEEECCCCccCcEECCCcEEEE----EEeccEEEEEeCCCce-EEEEecCCcEEEEcCCC
Confidence 67888888999999999999987755 2233455666665543 34567788888876663
No 29
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=49.31 E-value=12 Score=29.22 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=30.2
Q ss_pred EEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEE
Q 029796 97 FIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 136 (187)
Q Consensus 97 ~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~ 136 (187)
...|++|+.+-|+.|.=.|..|+|.++.... ..-.|.|.
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k-~r~~V~v~ 163 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEK-SRLKVSVS 163 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTT-TEEEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCC-CEEEEEEE
Confidence 4589999999999999999999999986432 23444443
No 30
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=46.56 E-value=30 Score=25.36 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=17.8
Q ss_pred CccEEEEEcCCCCeEEEeeceEEEEc
Q 029796 129 SFETIHIQDALGHEFATRLGNVFTIG 154 (187)
Q Consensus 129 s~~~V~i~d~~g~~F~T~~~~vfvIG 154 (187)
...++.|+..+|.+..+-.+.-|...
T Consensus 53 ~~~~~~i~t~~G~~i~~T~~H~~~t~ 78 (139)
T 2in0_A 53 TRDVIGLRIAGGAILWATPDHKVLTE 78 (139)
T ss_dssp EEEEEEEEETTSCEEEECTTCEEEET
T ss_pred CcEEEEEEeCCCCEEEecCCCeEEec
Confidence 34677777777777777666666644
No 31
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=44.66 E-value=1.1e+02 Score=23.69 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=37.8
Q ss_pred eEEEE-Ec-CCCceEEEEcCc---hhhceeEEEEee----eEEeeCCeeEEEccCceEEeeCCCCcccCCeEEEe
Q 029796 23 NFRLL-YD-TKGRFRLHSLRD---EEAKFKLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 88 (187)
Q Consensus 23 ~yRvl-~d-~kg~f~l~~I~~---eEa~~KLcKV~~----k~~~~gg~~ql~~hDGrni~~~d~~ik~~DTv~i~ 88 (187)
.++++ +| ..|++...+++. -.+.-++.||+= .-.++..+|.+...+|+-.-..-.+++.||.|.+-
T Consensus 46 ~~~V~s~d~~~gk~~~~~v~~v~~~~~~~~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 46 EIKVYSIDLETGKVVLTDIEDVIKAPATDHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp CEEEEEEETTTTEEEEEEEEEEEEEECCSCEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred CcEEEEEECCCCcEEEEEeeeEEEcCCCceEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 34444 56 667766665532 223335666642 34456677777777665433334467888888763
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=42.05 E-value=62 Score=22.67 Aligned_cols=13 Identities=31% Similarity=0.504 Sum_probs=8.5
Q ss_pred EecCCcEEEEECCC
Q 029796 99 KFDVGNIVMVTGGR 112 (187)
Q Consensus 99 ~fe~G~~~~vtgG~ 112 (187)
.|++|+.+.| .|.
T Consensus 63 ~i~~Gdvv~i-~g~ 75 (97)
T 3e0e_A 63 EVKKGDIAEV-SGY 75 (97)
T ss_dssp CCCTTCEEEE-EEE
T ss_pred ccCCCCEEEE-EEE
Confidence 6777777776 444
No 33
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=40.85 E-value=36 Score=26.55 Aligned_cols=40 Identities=20% Similarity=0.483 Sum_probs=29.4
Q ss_pred CceEEEE-EcCCC-------ceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeC
Q 029796 21 NENFRLL-YDTKG-------RFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP 75 (187)
Q Consensus 21 ~e~yRvl-~d~kg-------~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~ 75 (187)
|++-||+ +|.+. .|.+++ +++|..|.|.|-+. +||+++|.
T Consensus 77 ~~YVRliGfDn~~~~qs~~~sfIV~R-P~~epgf~l~r~e~--------------~~r~~~y~ 124 (138)
T 4f0h_B 77 NFYIKVVGFSSERGIESTIISFIVNR-PKHEPGFNLIRQED--------------KSRSIKYS 124 (138)
T ss_dssp TSEEEEEEEECCTTTCEEEEEEEEEC-CSCCCCEEEEEEEC--------------STTCEEEE
T ss_pred CCeEEEEEEeCCCceEEEEEEEEEeC-CCCCCceEEEEeec--------------CCceEEEE
Confidence 6778888 78775 366666 67788888888664 67777764
No 34
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=37.13 E-value=76 Score=26.32 Aligned_cols=36 Identities=6% Similarity=0.284 Sum_probs=26.1
Q ss_pred EEEccCceEEeeCCCCcccCCeEEEecCCCeeeeEEEec
Q 029796 63 YINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 101 (187)
Q Consensus 63 ql~~hDGrni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe 101 (187)
.+-+.||+ .|.. ....++..+||..+++++..|++.
T Consensus 156 ele~~dg~--lyvn-~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 156 ELEYINGE--VWAN-IWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEEETTE--EEEE-ETTSSEEEEEETTTCCEEEEEECH
T ss_pred eEEEECCE--EEEe-cCCCCeEEEEECCCCcEEEEEECC
Confidence 34455885 3322 345788899999999999999985
No 35
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=36.13 E-value=96 Score=21.59 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=40.5
Q ss_pred EEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCeEEEecCCCeeeeEEEecCCcEEEEECC
Q 029796 49 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 111 (187)
Q Consensus 49 cKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~vtgG 111 (187)
+||...+.-+|+...++.|..-.+.+ +-..-++.+..++++. ....+.+|+.+++-.|
T Consensus 17 v~v~~~~l~PG~~~~~H~H~~~~~iv----~v~~G~~~~~~~dG~~-~~~~l~aGd~~~~p~G 74 (98)
T 2ozi_A 17 VRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTR-SLAQLKTGRSYARKAG 74 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCE-ECCCBCTTCCEEECTT
T ss_pred EEEEEEEECCCCccCcEeCCCCEEEE----EEeeEEEEEEeCCCcE-EEEEECCCCEEEECCC
Confidence 67777788889999999998765543 3344556666666653 3467888888888776
No 36
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=33.40 E-value=1.1e+02 Score=22.03 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=39.3
Q ss_pred EEEEcCCCceEEEEcCchhhceeEEEEeeeE-EeeCCeeEEEccCc---eEEeeCCCCcccCCeEEEecC
Q 029796 25 RLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQ-FGQKGIPYINTYDG---RTIRYPDPLIKANDTIKLDLE 90 (187)
Q Consensus 25 Rvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~-~~~gg~~ql~~hDG---rni~~~d~~ik~~DTv~i~l~ 90 (187)
|.....++.|.+..++.+++..--|++.+.. .......+|..... -.+.........|+++.+.-.
T Consensus 64 r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~ 133 (208)
T 3r4d_A 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133 (208)
T ss_dssp SEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEE
T ss_pred eeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEE
Confidence 4444567889999999999999999998863 22223333443332 222222223566777666543
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.79 E-value=77 Score=26.95 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=41.7
Q ss_pred cCceEEeeC-C-----CCcccCCeEEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCC
Q 029796 67 YDGRTIRYP-D-----PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALG 140 (187)
Q Consensus 67 hDGrni~~~-d-----~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g 140 (187)
+-|+++++. + ..+++|++|.++ .+..|++..||+. +|.+-++.|+- ++ .+.+.|-+..|
T Consensus 117 s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ 181 (251)
T 3m9b_A 117 TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHAD 181 (251)
T ss_dssp CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSS
T ss_pred eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCC
Confidence 577887653 2 369999999996 8999999999985 46777777653 11 12344445555
Q ss_pred Ce
Q 029796 141 HE 142 (187)
Q Consensus 141 ~~ 142 (187)
++
T Consensus 182 ee 183 (251)
T 3m9b_A 182 EE 183 (251)
T ss_dssp CE
T ss_pred ce
Confidence 44
No 38
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=31.42 E-value=32 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.9
Q ss_pred EeeCCCCcccCCeEEEe
Q 029796 72 IRYPDPLIKANDTIKLD 88 (187)
Q Consensus 72 i~~~d~~ik~~DTv~i~ 88 (187)
+|..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46678889999999874
No 39
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=29.39 E-value=71 Score=22.08 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=30.8
Q ss_pred EEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCc
Q 029796 24 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLI 79 (187)
Q Consensus 24 yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~i 79 (187)
-|.--|..|.|.+ ||+| + -+++|+++|+--||..|-+|-...
T Consensus 5 ~RtWtDrtG~F~V------eA~f--l------g~~dgki~LhK~nGv~I~VP~~kl 46 (68)
T 2hbp_A 5 SRLWVDRSGTFKV------DAEF--I------GCAKGKIHLHKANGVKIAVAADKL 46 (68)
T ss_dssp SEEEEBSSSCCEE------EEEE--E------EEETTEEEEECTTSCEEEEETTSB
T ss_pred ccEEEcCCCCeEE------EEEE--E------EEeCCEEEEEecCCcEEEeEhHHc
Confidence 3777788888865 4543 2 245899999999999998875443
No 40
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.37 E-value=6.5 Score=32.35 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=23.0
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEE
Q 029796 100 FDVGNIVMVTGGRNRGRVGIIKNREK 125 (187)
Q Consensus 100 fe~G~~~~vtgG~n~G~vG~I~~i~~ 125 (187)
+..|+.+.|+.|+.-|..|+|.++..
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eecCCEEEEeecCCCCceEEEEEEEC
Confidence 77899999999999999999998854
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=27.75 E-value=16 Score=34.61 Aligned_cols=61 Identities=16% Similarity=0.356 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCceEEEEcCch------hhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCeEEEe
Q 029796 21 NENFRLLYDTKGRFRLHSLRDE------EAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 88 (187)
Q Consensus 21 ~e~yRvl~d~kg~f~l~~I~~e------Ea~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DTv~i~ 88 (187)
...|.|++|. ..|.+++.++- +..-+.+-......++..-+.++|..| +| .|.+||+|.+.
T Consensus 355 ~~~~~L~p~~-~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~G---L~---RYr~GD~v~v~ 421 (609)
T 4b2g_A 355 EVSYTIMPNM-AYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAG---LY---RYRVGDILRVT 421 (609)
T ss_dssp GCCEEECTTS-CEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTS---CC---SEEEEEEEEEE
T ss_pred cCceeecCCc-EEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhhhh---hh---heecCCEEEEe
Confidence 4589999999 89999997652 223356666666677777788888777 22 37899998876
No 42
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=27.23 E-value=1.2e+02 Score=20.49 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=29.6
Q ss_pred ecCCCceEEEEEcCCC--ceEEEEcCchhhceeEEEEeee
Q 029796 17 IPKTNENFRLLYDTKG--RFRLHSLRDEEAKFKLCKVRSV 54 (187)
Q Consensus 17 I~kt~e~yRvl~d~kg--~f~l~~I~~eEa~~KLcKV~~k 54 (187)
+...+..|++..+..| .|.+..+..+++..--|.+.+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 95 (116)
T 2kkq_A 56 VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNE 95 (116)
T ss_dssp CCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEET
T ss_pred CcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcC
Confidence 3334577888888777 6888899999988888998874
No 43
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=27.16 E-value=1.6e+02 Score=21.60 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=31.4
Q ss_pred CchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCC-------CcccCCeEEEecC
Q 029796 40 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-------LIKANDTIKLDLE 90 (187)
Q Consensus 40 ~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~-------~ik~~DTv~i~l~ 90 (187)
.++|.+. .++|..-. .++..++.+.||..++..=+ .+.+||-|.+++.
T Consensus 28 ~~~~~e~-~G~Vi~~l--gn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 28 FKEEGQE-YGQVQRML--GNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCTTEE-EEEEEEEE--ETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCCCCEE-EEEEEEEc--CCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 3444443 57777632 24777777999988754322 4569999999865
No 44
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=27.03 E-value=23 Score=33.27 Aligned_cols=60 Identities=10% Similarity=0.318 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCeEEEe
Q 029796 21 NENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 88 (187)
Q Consensus 21 ~e~yRvl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DTv~i~ 88 (187)
...|.+++|. ..|.+.+.++.|. -+.+-...+..++...+.++|.-| -+ .|.+||+|.+.
T Consensus 350 ~~~~~L~~~~-~ffEFip~~~~~~-~~~v~l~eVe~G~~YelViTt~~G-L~-----RYr~GD~v~v~ 409 (581)
T 4eql_A 350 DVSYTFMPNM-SYFEFIPMDGGDK-NDVVDLEDVKLGCTYEPVVTNFAG-LY-----RMRVGDIVLVT 409 (581)
T ss_dssp GCCEEECTTS-SEEEEEECSTTCC-SSCEEGGGCCTTCEEEEEEECSSS-CC-----SEECCEEEEEE
T ss_pred cCceeecCCc-EEEEEEeccccCC-CcEeCHHHcCCCceEEEEEeeccc-ee-----eEEcCCEEEEc
Confidence 3479999999 8999999876542 256666666667777777777776 23 47899988876
No 45
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=25.92 E-value=1.7e+02 Score=20.79 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=28.5
Q ss_pred eEEEEeeeEEeeCCeeEEEccCceE-----EeeCCCCcccCCeEEEecCCCeeeeEEEecCCcEEEE
Q 029796 47 KLCKVRSVQFGQKGIPYINTYDGRT-----IRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMV 108 (187)
Q Consensus 47 KLcKV~~k~~~~gg~~ql~~hDGrn-----i~~~d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~v 108 (187)
.-+-|..+-+-.+..-++...||+. +...| .+| ++.+.+=..+.-. .+++|+.+.+
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D---~TG-~IrvtlW~~~a~~--~l~~Gdvv~i 75 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD---ETG-SIRVTLWDNLTDI--DVGRGDYVRV 75 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE---TTE-EEEEEEEGGGGGS--CCCTTCEEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC---CCC-cEEEEEECccccc--ccCCCCEEEE
Confidence 4566666655555566666667753 22223 234 4555433222111 5666766666
No 46
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=25.40 E-value=97 Score=22.45 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.5
Q ss_pred eEEEEEEEEEecCCccEE
Q 029796 116 RVGIIKNREKHKGSFETI 133 (187)
Q Consensus 116 ~vG~I~~i~~~~~s~~~V 133 (187)
++|+|.+.++||.+..+.
T Consensus 14 ~VG~I~~~e~hp~adkL~ 31 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADKLY 31 (107)
T ss_dssp EEEEEEEEEECTTCSSCE
T ss_pred EEEEEEEEEECCCCCccE
Confidence 689999999999776333
No 47
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=25.13 E-value=2.3e+02 Score=21.82 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=38.3
Q ss_pred CCCcccCCeEEEecCCCeeeeEEEecCCcEEEEECCCcceeEEEEEEEEEec-CCccEEEEEcCCCCeEEEeeceEEEEc
Q 029796 76 DPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 154 (187)
Q Consensus 76 d~~ik~~DTv~i~l~~~kI~~~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~-~s~~~V~i~d~~g~~F~T~~~~vfvIG 154 (187)
+.+++.||.|+-+=-.+. |-+|= -||+|.+++... +.+..+.++=+.. -..+++|+|+-
T Consensus 106 ~~~i~~GD~vvTSGl~g~------fP~Gi-----------pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNF------NVADI-----------PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSS------CCEEE-----------EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCc------CCCCC-----------EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEe
Confidence 346777777766543332 11121 389999998765 5567788875433 35788999997
Q ss_pred c
Q 029796 155 K 155 (187)
Q Consensus 155 ~ 155 (187)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 5
No 48
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=25.02 E-value=99 Score=22.64 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.0
Q ss_pred eEEEEEEEEEecCCccE
Q 029796 116 RVGIIKNREKHKGSFET 132 (187)
Q Consensus 116 ~vG~I~~i~~~~~s~~~ 132 (187)
++|+|.+.++||.+..+
T Consensus 18 rVG~I~~~e~hp~adkL 34 (112)
T 2cwp_A 18 KVGLVKKAEKIKRTKKL 34 (112)
T ss_dssp EEEEEEEEEECTTCSSC
T ss_pred EEEEEEEEEECCCCCcc
Confidence 68999999999977633
No 49
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=24.49 E-value=1e+02 Score=22.43 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=29.0
Q ss_pred eCCeeEEEccCceEEeeCCC---------CcccCCeEEEecCCCeee
Q 029796 58 QKGIPYINTYDGRTIRYPDP---------LIKANDTIKLDLEENKIT 95 (187)
Q Consensus 58 ~gg~~ql~~hDGrni~~~d~---------~ik~~DTv~i~l~~~kI~ 95 (187)
+.+.+.|-|.|+....--+| .+..||.+.|+-.+++|.
T Consensus 33 ~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V~ 79 (95)
T 2cqa_A 33 KVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKIS 79 (95)
T ss_dssp CEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEE
T ss_pred eEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEEE
Confidence 34667778888888743343 789999999999998775
No 50
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=23.73 E-value=1.6e+02 Score=20.92 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=24.4
Q ss_pred EEEcCCCceEEEEcCchhhceeEEEEeeeEEeeCCeeEEEccCceEEeeCCCCcccCCeEEEe
Q 029796 26 LLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 88 (187)
Q Consensus 26 vl~d~kg~f~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~DTv~i~ 88 (187)
+-.++...+..|. +.+|. .++-.|...+.+ ||..+. ++.||++.|.
T Consensus 45 ~~~~pG~~~~~H~-~~~E~----------~~Vl~G~~~~~~-~g~~~~-----l~~GD~v~ip 90 (119)
T 3lwc_A 45 GRYAPGQSLTETM-AVDDV----------MIVLEGRLSVST-DGETVT-----AGPGEIVYMP 90 (119)
T ss_dssp EEECTTCEEEEEC-SSEEE----------EEEEEEEEEEEE-TTEEEE-----ECTTCEEEEC
T ss_pred EEECCCCCcCccC-CCCEE----------EEEEeCEEEEEE-CCEEEE-----ECCCCEEEEC
Confidence 3445555666664 44443 233345555555 566554 4677776664
No 51
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=23.50 E-value=1.5e+02 Score=20.94 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=30.0
Q ss_pred ecCCCceEEEEEcCCC--ceEEEEcCchhhceeEEEEeee
Q 029796 17 IPKTNENFRLLYDTKG--RFRLHSLRDEEAKFKLCKVRSV 54 (187)
Q Consensus 17 I~kt~e~yRvl~d~kg--~f~l~~I~~eEa~~KLcKV~~k 54 (187)
+...+..|++.....| .|.+..+..+++..--|.+.+.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 84 (197)
T 2j8h_A 45 IIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQ 84 (197)
T ss_dssp CCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEET
T ss_pred CccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEEC
Confidence 4445678888877777 7888889999998888998864
No 52
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.01 E-value=1.7e+02 Score=19.38 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=5.6
Q ss_pred eeCCeeEEEccCc
Q 029796 57 GQKGIPYINTYDG 69 (187)
Q Consensus 57 ~~gg~~ql~~hDG 69 (187)
+-.|...+.+.||
T Consensus 45 Vl~G~~~~~~~~g 57 (97)
T 2fqp_A 45 MTTGPLLLETPEG 57 (97)
T ss_dssp SSCEEEEEEETTE
T ss_pred EeecEEEEEeCCC
Confidence 3344444444443
No 53
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.18 E-value=81 Score=20.77 Aligned_cols=36 Identities=6% Similarity=0.079 Sum_probs=24.5
Q ss_pred CCCceEEEEEcCCC--ceEEEEcCchhhceeEEEEeee
Q 029796 19 KTNENFRLLYDTKG--RFRLHSLRDEEAKFKLCKVRSV 54 (187)
Q Consensus 19 kt~e~yRvl~d~kg--~f~l~~I~~eEa~~KLcKV~~k 54 (187)
..+..|++..+..| .|.+..+..+++..--|.+.|.
T Consensus 51 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 88 (110)
T 2dm2_A 51 PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANP 88 (110)
T ss_dssp TTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECT
T ss_pred CCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEEC
Confidence 34567777777677 4666677777777777877663
No 54
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=22.03 E-value=40 Score=24.50 Aligned_cols=12 Identities=0% Similarity=0.080 Sum_probs=5.8
Q ss_pred ccCCeEEEecCC
Q 029796 80 KANDTIKLDLEE 91 (187)
Q Consensus 80 k~~DTv~i~l~~ 91 (187)
.||.+..+..+.
T Consensus 35 tTGY~W~~~~~~ 46 (111)
T 3m86_A 35 STGYAWNIEYPT 46 (111)
T ss_dssp GGTCEEEEECCT
T ss_pred CCCeEEEEecCC
Confidence 455555554443
No 55
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=21.68 E-value=95 Score=22.64 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.4
Q ss_pred eEEEEEEEEEecCCccEE
Q 029796 116 RVGIIKNREKHKGSFETI 133 (187)
Q Consensus 116 ~vG~I~~i~~~~~s~~~V 133 (187)
++|+|.+.++||.+..+.
T Consensus 18 rVG~I~~~e~hp~adkL~ 35 (111)
T 1pyb_A 18 RVAKVLSAERVEGSEKLL 35 (111)
T ss_dssp EEEEEEEEECCSSCSCCE
T ss_pred EEEEEEEEEECCCCCccE
Confidence 689999999999766433
No 56
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=21.67 E-value=56 Score=28.72 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=29.7
Q ss_pred EEEecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEE
Q 029796 97 FIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 136 (187)
Q Consensus 97 ~i~fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~i~ 136 (187)
...|++|+.+.|+.|.=.|..|+|.++.... ..-.|.|.
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek-~rv~V~V~ 334 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPER-QELKVNVT 334 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTT-TEEEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCC-CEEEEEEE
Confidence 4579999999999999999999999985422 23444443
No 57
>4div_S ORF46; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=21.19 E-value=78 Score=25.66 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=18.8
Q ss_pred CCeeEEEccCceEEeeCCCCcccCCeEEEecCCCee
Q 029796 59 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKI 94 (187)
Q Consensus 59 gg~~ql~~hDGrni~~~d~~ik~~DTv~i~l~~~kI 94 (187)
++.+++. +| .|++.+..+++||+|+||-..+++
T Consensus 177 ~~~i~i~--ng-~i~i~~~~~~~gd~ivID~~~~~v 209 (253)
T 4div_S 177 TEGLLAT--DG-NYRLKSSQAKKGDFLEFDFQTGDT 209 (253)
T ss_dssp SSSEEEE--SS-SCEEEETTCCTTTCEEEEETTSCE
T ss_pred CCeEEEE--cC-EEEEEeCcccCCCEEEEEcCCCEE
Confidence 4455554 45 555433566777777777554443
No 58
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=21.11 E-value=2.6e+02 Score=20.75 Aligned_cols=25 Identities=4% Similarity=0.162 Sum_probs=15.3
Q ss_pred cEEEEEcCCCCeEEEeeceEEEEcc
Q 029796 131 ETIHIQDALGHEFATRLGNVFTIGK 155 (187)
Q Consensus 131 ~~V~i~d~~g~~F~T~~~~vfvIG~ 155 (187)
..+.|+..+|+.+..-.+..+.+-+
T Consensus 54 ~f~~I~t~~g~~L~lTp~H~i~v~~ 78 (145)
T 1at0_A 54 NFVQLHTDGGAVLTVTPAHLVSVWQ 78 (145)
T ss_dssp EEEEEEETTSCEEEECTTCEEEEEE
T ss_pred eEEEEEECCCCEEEEeCCCEEEEec
Confidence 5566666666666666666555543
Done!