Query 029797
Match_columns 187
No_of_seqs 112 out of 1145
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 6.8E-49 1.5E-53 317.2 20.0 167 14-180 1-177 (178)
2 COG1611 Predicted Rossmann fol 100.0 1.3E-39 2.8E-44 268.2 18.5 169 12-181 13-195 (205)
3 TIGR00725 conserved hypothetic 100.0 2.1E-38 4.5E-43 251.8 17.3 153 13-178 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 1.6E-33 3.4E-38 217.6 14.0 121 58-178 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 2.9E-16 6.4E-21 130.8 17.3 162 5-177 37-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.5 1.7E-12 3.7E-17 107.6 14.5 151 5-164 35-207 (212)
7 PRK10736 hypothetical protein; 99.4 4E-12 8.7E-17 113.3 16.2 164 5-179 100-284 (374)
8 COG0758 Smf Predicted Rossmann 99.3 8E-11 1.7E-15 104.2 14.9 168 5-183 104-291 (350)
9 PF12694 MoCo_carrier: Putativ 97.5 0.0013 2.8E-08 51.6 10.1 96 48-150 1-101 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 96.3 0.012 2.6E-07 43.5 6.1 48 98-151 50-101 (113)
11 PF06908 DUF1273: Protein of u 96.3 0.15 3.3E-06 41.3 12.5 117 26-147 20-168 (177)
12 KOG3614 Ca2+/Mg2+-permeable ca 96.2 0.28 6.1E-06 50.2 16.1 141 14-158 119-315 (1381)
13 PF11071 DUF2872: Protein of u 96.1 0.11 2.3E-06 40.4 10.2 72 100-179 63-137 (141)
14 PF10686 DUF2493: Protein of u 96.0 0.064 1.4E-06 37.1 7.9 62 15-79 5-67 (71)
15 COG0707 MurG UDP-N-acetylgluco 95.9 0.2 4.3E-06 44.8 12.4 75 96-180 239-320 (357)
16 PRK13609 diacylglycerol glucos 95.5 0.63 1.4E-05 40.6 14.1 70 101-180 265-334 (380)
17 PLN02605 monogalactosyldiacylg 95.3 0.53 1.1E-05 41.5 13.1 68 103-180 276-343 (382)
18 TIGR03646 YtoQ_fam YtoQ family 95.3 0.28 6E-06 38.2 9.6 73 100-180 66-141 (144)
19 PRK13608 diacylglycerol glucos 95.2 0.39 8.4E-06 42.7 12.1 70 101-180 265-334 (391)
20 PRK13660 hypothetical protein; 94.9 1 2.2E-05 36.7 12.6 107 35-145 33-166 (182)
21 cd03785 GT1_MurG MurG is an N- 94.8 2.2 4.7E-05 36.3 15.3 70 101-180 244-320 (350)
22 TIGR01133 murG undecaprenyldip 94.7 2.3 5.1E-05 36.1 15.1 66 105-180 246-317 (348)
23 PRK00025 lpxB lipid-A-disaccha 94.4 1.5 3.2E-05 38.1 13.3 65 104-180 256-337 (380)
24 PF13528 Glyco_trans_1_3: Glyc 94.0 2.2 4.7E-05 36.1 13.3 119 44-180 192-316 (318)
25 TIGR01426 MGT glycosyltransfer 93.5 1 2.2E-05 39.6 10.8 64 105-179 287-354 (392)
26 cd03784 GT1_Gtf_like This fami 92.9 3.2 6.9E-05 36.4 12.9 64 105-179 300-367 (401)
27 PF04101 Glyco_tran_28_C: Glyc 92.2 0.17 3.6E-06 39.3 3.5 50 104-163 67-119 (167)
28 PRK12446 undecaprenyldiphospho 92.0 7.5 0.00016 34.2 14.1 66 105-180 248-321 (352)
29 PRK10565 putative carbohydrate 91.0 1.3 2.9E-05 41.3 8.7 103 44-152 254-359 (508)
30 PRK05749 3-deoxy-D-manno-octul 90.4 12 0.00027 33.1 14.5 79 92-180 303-384 (425)
31 TIGR03590 PseG pseudaminic aci 89.5 6 0.00013 33.7 10.8 38 100-148 232-269 (279)
32 PRK00696 sucC succinyl-CoA syn 88.9 14 0.0003 33.0 13.2 72 110-182 311-385 (388)
33 PRK00726 murG undecaprenyldiph 85.4 23 0.00049 30.4 15.5 73 98-180 241-320 (357)
34 COG1819 Glycosyl transferases, 85.3 20 0.00043 32.5 12.1 105 41-162 234-342 (406)
35 COG3660 Predicted nucleoside-d 83.9 29 0.00063 30.5 12.4 49 106-163 241-292 (329)
36 TIGR00215 lpxB lipid-A-disacch 83.5 32 0.00069 30.6 13.8 31 106-147 264-294 (385)
37 PF06258 Mito_fiss_Elm1: Mitoc 83.2 31 0.00067 30.2 14.3 53 106-167 225-279 (311)
38 TIGR03492 conserved hypothetic 77.5 53 0.0012 29.4 13.4 66 104-180 291-360 (396)
39 cd03807 GT1_WbnK_like This fam 76.8 6.3 0.00014 32.3 5.4 65 105-181 264-329 (365)
40 COG2185 Sbm Methylmalonyl-CoA 76.8 7.7 0.00017 30.5 5.5 44 32-76 27-70 (143)
41 PF02401 LYTB: LytB protein; 76.4 46 0.00099 28.9 10.8 75 100-180 197-276 (281)
42 COG3613 Nucleoside 2-deoxyribo 76.1 8.3 0.00018 31.2 5.7 44 100-149 59-108 (172)
43 TIGR02717 AcCoA-syn-alpha acet 75.9 64 0.0014 29.5 14.2 132 44-180 296-442 (447)
44 cd03794 GT1_wbuB_like This fam 75.7 43 0.00094 27.5 13.6 72 102-182 287-363 (394)
45 TIGR00196 yjeF_cterm yjeF C-te 75.5 20 0.00043 30.2 8.2 46 104-153 87-132 (272)
46 TIGR00421 ubiX_pad polyprenyl 74.5 8.2 0.00018 31.2 5.4 73 109-181 75-166 (181)
47 PRK11914 diacylglycerol kinase 74.2 55 0.0012 28.0 13.2 56 113-180 67-122 (306)
48 PRK12422 chromosomal replicati 73.8 56 0.0012 30.1 11.2 142 32-182 120-284 (445)
49 TIGR01016 sucCoAbeta succinyl- 73.0 69 0.0015 28.5 12.7 70 110-180 311-383 (386)
50 cd00384 ALAD_PBGS Porphobilino 72.9 58 0.0013 28.9 10.5 146 23-180 129-296 (314)
51 cd03786 GT1_UDP-GlcNAc_2-Epime 72.6 59 0.0013 27.6 13.9 64 101-180 269-333 (363)
52 cd03812 GT1_CapH_like This fam 72.5 10 0.00022 31.8 5.7 67 105-181 262-328 (358)
53 cd03823 GT1_ExpE7_like This fa 72.4 52 0.0011 26.9 11.2 70 101-181 254-326 (359)
54 COG1597 LCB5 Sphingosine kinas 72.1 8.1 0.00018 33.6 5.1 46 33-79 46-92 (301)
55 cd04823 ALAD_PBGS_aspartate_ri 72.0 72 0.0016 28.4 11.1 143 24-179 135-300 (320)
56 cd04951 GT1_WbdM_like This fam 70.3 8.3 0.00018 32.2 4.7 66 105-181 258-323 (360)
57 COG0593 DnaA ATPase involved i 70.0 33 0.00071 31.4 8.7 108 32-151 96-219 (408)
58 PRK13057 putative lipid kinase 70.0 17 0.00036 30.9 6.5 58 109-180 50-107 (287)
59 cd03808 GT1_cap1E_like This fa 69.5 12 0.00026 30.5 5.4 67 105-180 259-325 (359)
60 COG1832 Predicted CoA-binding 69.4 8.9 0.00019 30.0 4.2 36 11-51 14-49 (140)
61 TIGR00661 MJ1255 conserved hyp 69.0 73 0.0016 27.2 12.9 54 102-165 240-294 (321)
62 PHA03392 egt ecdysteroid UDP-g 68.4 85 0.0019 29.3 11.3 150 13-179 264-427 (507)
63 PF00534 Glycos_transf_1: Glyc 67.6 13 0.00028 28.1 4.9 71 100-181 83-155 (172)
64 PRK10307 putative glycosyl tra 67.5 31 0.00067 30.3 7.9 73 100-181 294-370 (412)
65 PRK06029 3-octaprenyl-4-hydrox 67.2 15 0.00033 29.8 5.5 73 109-181 78-169 (185)
66 cd01171 YXKO-related B.subtili 66.9 24 0.00052 29.2 6.8 43 105-151 73-115 (254)
67 cd03820 GT1_amsD_like This fam 66.4 23 0.00049 28.7 6.4 70 102-181 245-316 (348)
68 cd03819 GT1_WavL_like This fam 66.3 16 0.00034 30.6 5.6 66 103-179 257-325 (355)
69 cd03795 GT1_like_4 This family 66.2 27 0.00058 29.1 7.0 70 101-180 255-328 (357)
70 cd03825 GT1_wcfI_like This fam 65.7 20 0.00044 29.9 6.2 69 101-180 256-326 (365)
71 smart00046 DAGKc Diacylglycero 65.3 8.9 0.00019 28.6 3.5 34 113-146 52-85 (124)
72 cd03801 GT1_YqgM_like This fam 65.1 15 0.00033 29.7 5.2 66 103-180 269-337 (374)
73 PRK13054 lipid kinase; Reviewe 64.5 55 0.0012 28.0 8.7 62 109-180 56-117 (300)
74 cd06259 YdcF-like YdcF-like. Y 64.2 37 0.0008 25.5 6.9 11 111-121 1-11 (150)
75 TIGR03702 lip_kinase_YegS lipi 63.8 61 0.0013 27.6 8.8 60 110-180 53-113 (293)
76 PF04016 DUF364: Domain of unk 63.6 9.1 0.0002 29.8 3.4 72 100-180 53-130 (147)
77 COG0063 Predicted sugar kinase 63.5 74 0.0016 27.6 9.3 102 43-150 31-139 (284)
78 COG1063 Tdh Threonine dehydrog 63.4 92 0.002 27.3 10.1 83 45-130 170-259 (350)
79 PF09152 DUF1937: Domain of un 62.0 11 0.00024 28.6 3.4 39 101-145 71-114 (116)
80 cd03809 GT1_mtfB_like This fam 61.9 57 0.0012 26.9 8.2 65 103-181 266-333 (365)
81 COG1057 NadD Nicotinic acid mo 61.9 11 0.00025 30.9 3.8 162 12-183 1-194 (197)
82 PRK14086 dnaA chromosomal repl 61.8 1.2E+02 0.0027 29.3 11.2 141 32-181 301-458 (617)
83 cd07025 Peptidase_S66 LD-Carbo 61.8 70 0.0015 27.3 8.9 44 99-145 47-95 (282)
84 PF04007 DUF354: Protein of un 61.5 37 0.0008 30.1 7.2 63 105-180 244-306 (335)
85 KOG3349 Predicted glycosyltran 60.9 23 0.0005 28.4 5.2 60 108-177 79-143 (170)
86 PRK00861 putative lipid kinase 60.4 21 0.00046 30.5 5.4 43 34-78 46-89 (300)
87 PRK14077 pnk inorganic polypho 60.2 46 0.001 28.8 7.4 67 4-77 2-96 (287)
88 PRK00861 putative lipid kinase 59.8 69 0.0015 27.3 8.5 57 110-180 58-114 (300)
89 PRK06973 nicotinic acid mononu 59.7 15 0.00032 31.1 4.2 35 9-43 17-51 (243)
90 PRK13337 putative lipid kinase 59.6 25 0.00055 30.1 5.8 44 34-78 46-91 (304)
91 PF00781 DAGK_cat: Diacylglyce 59.3 19 0.00041 26.7 4.4 32 47-79 57-91 (130)
92 cd03804 GT1_wbaZ_like This fam 58.8 30 0.00065 29.3 6.1 69 101-180 253-322 (351)
93 PRK02645 ppnK inorganic polyph 58.5 15 0.00033 32.0 4.2 89 12-148 2-90 (305)
94 COG1010 CobJ Precorrin-3B meth 58.4 1.2E+02 0.0026 26.0 10.0 115 32-150 60-198 (249)
95 cd03822 GT1_ecORF704_like This 58.3 1E+02 0.0023 25.3 9.6 67 101-180 259-330 (366)
96 PF13692 Glyco_trans_1_4: Glyc 58.3 9.5 0.00021 27.6 2.5 69 102-181 63-132 (135)
97 COG0794 GutQ Predicted sugar p 57.9 83 0.0018 26.1 8.2 41 37-77 31-73 (202)
98 cd07062 Peptidase_S66_mccF_lik 57.4 1.1E+02 0.0023 26.6 9.3 31 110-141 67-97 (308)
99 COG1597 LCB5 Sphingosine kinas 57.3 33 0.00071 29.8 6.1 57 112-180 60-117 (301)
100 COG4671 Predicted glycosyl tra 57.3 1E+02 0.0022 28.1 9.2 72 98-180 283-361 (400)
101 PRK13054 lipid kinase; Reviewe 57.1 28 0.00061 29.8 5.6 43 35-78 46-92 (300)
102 PRK13937 phosphoheptose isomer 57.1 29 0.00063 27.7 5.4 32 27-58 21-52 (188)
103 cd03800 GT1_Sucrose_synthase T 57.0 19 0.00042 30.6 4.6 67 103-180 296-364 (398)
104 cd00411 Asparaginase Asparagin 57.0 31 0.00067 30.3 5.9 34 109-145 78-111 (323)
105 TIGR03449 mycothiol_MshA UDP-N 56.6 47 0.001 28.8 7.1 69 101-180 294-364 (405)
106 PRK14569 D-alanyl-alanine synt 56.3 29 0.00063 29.6 5.6 38 13-50 3-40 (296)
107 TIGR00519 asnASE_I L-asparagin 56.3 33 0.00071 30.4 6.0 37 107-146 75-111 (336)
108 cd00587 HCP_like The HCP famil 55.7 25 0.00054 30.3 4.9 150 12-178 93-257 (258)
109 PRK14046 malate--CoA ligase su 55.6 1.6E+02 0.0034 26.6 12.8 112 56-180 267-383 (392)
110 PRK13059 putative lipid kinase 55.5 48 0.001 28.3 6.8 60 109-180 56-115 (295)
111 KOG4022 Dihydropteridine reduc 55.3 76 0.0017 26.1 7.4 70 44-120 3-83 (236)
112 cd03799 GT1_amsK_like This is 55.2 38 0.00082 28.1 6.0 71 101-180 247-323 (355)
113 PF14359 DUF4406: Domain of un 55.1 28 0.00062 25.0 4.5 38 100-143 50-90 (92)
114 PF13607 Succ_CoA_lig: Succiny 54.9 45 0.00097 25.7 5.9 116 46-179 4-136 (138)
115 PLN02871 UDP-sulfoquinovose:DA 54.5 35 0.00077 30.8 6.1 70 101-180 323-396 (465)
116 KOG1098 Putative SAM-dependent 54.4 1.8E+02 0.004 28.5 10.8 48 27-75 12-75 (780)
117 TIGR02919 accessory Sec system 54.2 53 0.0012 30.2 7.2 78 93-181 330-408 (438)
118 COG1064 AdhP Zn-dependent alco 54.2 1.4E+02 0.003 26.8 9.5 82 45-131 168-250 (339)
119 PRK13337 putative lipid kinase 53.6 1E+02 0.0022 26.4 8.5 59 110-180 58-116 (304)
120 PRK13055 putative lipid kinase 53.4 34 0.00073 29.9 5.6 44 34-78 48-93 (334)
121 PRK11914 diacylglycerol kinase 52.6 33 0.00072 29.3 5.4 44 33-78 52-96 (306)
122 PRK15484 lipopolysaccharide 1, 52.5 47 0.001 29.2 6.4 69 101-180 268-340 (380)
123 TIGR03088 stp2 sugar transfera 52.5 36 0.00078 29.1 5.6 66 104-180 267-334 (374)
124 PRK08769 DNA polymerase III su 52.4 23 0.00049 31.2 4.3 76 109-185 72-167 (319)
125 PRK08862 short chain dehydroge 52.2 92 0.002 25.2 7.7 30 15-52 7-36 (227)
126 PRK13055 putative lipid kinase 52.1 43 0.00092 29.3 6.0 60 110-180 60-119 (334)
127 PF00781 DAGK_cat: Diacylglyce 52.0 25 0.00054 26.1 4.0 25 106-130 48-74 (130)
128 cd03818 GT1_ExpC_like This fam 51.8 42 0.00091 29.3 6.0 70 101-181 292-363 (396)
129 PRK08105 flavodoxin; Provision 51.1 21 0.00045 27.6 3.5 34 13-49 1-34 (149)
130 PF00861 Ribosomal_L18p: Ribos 51.0 46 0.001 24.9 5.3 40 31-70 70-117 (119)
131 PRK07775 short chain dehydroge 50.9 1.3E+02 0.0027 24.9 8.5 39 6-52 3-41 (274)
132 TIGR02153 gatD_arch glutamyl-t 50.9 44 0.00095 30.5 6.0 35 110-146 140-174 (404)
133 cd03814 GT1_like_2 This family 50.4 38 0.00082 27.9 5.2 68 103-180 260-328 (364)
134 PRK09922 UDP-D-galactose:(gluc 50.1 52 0.0011 28.3 6.2 72 101-181 249-321 (359)
135 PF13177 DNA_pol3_delta2: DNA 48.8 24 0.00053 27.5 3.6 86 100-185 58-156 (162)
136 PRK04539 ppnK inorganic polyph 48.6 99 0.0021 26.9 7.7 61 12-77 4-100 (296)
137 cd03821 GT1_Bme6_like This fam 48.4 1.5E+02 0.0032 24.1 12.7 66 102-180 274-341 (375)
138 PRK09004 FMN-binding protein M 48.3 21 0.00046 27.5 3.2 34 13-49 1-34 (146)
139 PRK07313 phosphopantothenoylcy 47.7 37 0.0008 27.3 4.6 75 106-180 74-176 (182)
140 PRK12360 4-hydroxy-3-methylbut 47.7 41 0.00089 29.2 5.1 74 100-179 197-275 (281)
141 PRK10886 DnaA initiator-associ 47.7 1.5E+02 0.0033 24.1 8.9 114 28-147 25-144 (196)
142 PF13380 CoA_binding_2: CoA bi 47.5 31 0.00068 25.5 3.8 31 14-49 1-31 (116)
143 PF01820 Dala_Dala_lig_N: D-al 47.3 21 0.00046 26.5 2.9 36 14-49 1-36 (117)
144 PRK04183 glutamyl-tRNA(Gln) am 47.0 56 0.0012 30.0 6.1 34 110-146 153-186 (419)
145 PRK05917 DNA polymerase III su 46.9 40 0.00087 29.4 4.9 79 107-185 58-149 (290)
146 TIGR00060 L18_bact ribosomal p 46.6 45 0.00098 25.1 4.6 39 31-69 65-111 (114)
147 PRK10494 hypothetical protein; 45.7 94 0.002 26.4 7.0 12 109-120 78-89 (259)
148 PRK12361 hypothetical protein; 45.7 45 0.00097 31.2 5.4 43 34-78 286-329 (547)
149 COG3573 Predicted oxidoreducta 45.7 43 0.00093 30.7 4.9 83 46-136 141-244 (552)
150 PRK12361 hypothetical protein; 45.6 70 0.0015 29.9 6.7 60 113-181 300-359 (547)
151 TIGR00640 acid_CoA_mut_C methy 45.0 76 0.0016 24.1 5.7 44 32-76 17-60 (132)
152 COG0300 DltE Short-chain dehyd 44.7 1.2E+02 0.0026 26.1 7.5 62 11-80 4-65 (265)
153 cd05844 GT1_like_7 Glycosyltra 44.6 50 0.0011 27.8 5.2 69 103-181 258-333 (367)
154 PRK14572 D-alanyl-alanine synt 44.2 44 0.00096 29.3 4.9 39 13-51 1-39 (347)
155 PRK05920 aromatic acid decarbo 44.1 56 0.0012 27.0 5.2 73 109-181 93-184 (204)
156 PF10727 Rossmann-like: Rossma 43.8 34 0.00074 26.0 3.6 27 14-49 11-37 (127)
157 PRK09461 ansA cytoplasmic aspa 43.7 69 0.0015 28.3 6.0 37 108-146 80-116 (335)
158 PLN02958 diacylglycerol kinase 43.7 50 0.0011 30.7 5.4 44 34-78 157-207 (481)
159 cd03802 GT1_AviGT4_like This f 43.6 97 0.0021 25.5 6.7 65 103-180 237-304 (335)
160 CHL00139 rpl18 ribosomal prote 43.6 51 0.0011 24.6 4.4 38 32-69 61-106 (109)
161 PF10087 DUF2325: Uncharacteri 43.6 1.1E+02 0.0025 21.5 10.1 89 48-157 3-94 (97)
162 PRK00941 acetyl-CoA decarbonyl 43.5 3.5E+02 0.0076 27.1 11.5 158 14-183 504-703 (781)
163 PRK13057 putative lipid kinase 43.5 56 0.0012 27.7 5.3 44 33-78 39-82 (287)
164 TIGR00147 lipid kinase, YegS/R 43.2 93 0.002 26.2 6.6 58 110-180 58-116 (293)
165 TIGR02113 coaC_strep phosphopa 43.1 49 0.0011 26.5 4.6 72 109-180 76-175 (177)
166 PLN02496 probable phosphopanto 43.1 78 0.0017 26.3 5.9 75 106-180 93-195 (209)
167 TIGR00216 ispH_lytB (E)-4-hydr 43.0 51 0.0011 28.6 5.0 75 100-179 196-274 (280)
168 COG0761 lytB 4-Hydroxy-3-methy 43.0 63 0.0014 28.4 5.5 75 100-182 200-285 (294)
169 cd04949 GT1_gtfA_like This fam 42.7 65 0.0014 27.4 5.7 65 106-180 275-341 (372)
170 PF00106 adh_short: short chai 42.3 37 0.00079 25.4 3.6 29 46-75 2-30 (167)
171 PRK02649 ppnK inorganic polyph 42.2 1.4E+02 0.003 26.2 7.6 60 13-77 1-100 (305)
172 PRK13938 phosphoheptose isomer 42.2 1.9E+02 0.0041 23.5 8.5 121 28-155 29-157 (196)
173 PRK01045 ispH 4-hydroxy-3-meth 41.7 58 0.0013 28.5 5.2 73 100-178 198-275 (298)
174 PLN02821 1-hydroxy-2-methyl-2- 41.6 70 0.0015 29.8 5.8 49 92-148 337-397 (460)
175 PRK12359 flavodoxin FldB; Prov 41.4 57 0.0012 26.1 4.7 21 59-79 102-122 (172)
176 cd03811 GT1_WabH_like This fam 41.2 58 0.0013 26.2 4.9 59 105-174 259-319 (353)
177 TIGR03702 lip_kinase_YegS lipi 41.0 59 0.0013 27.7 5.1 43 34-77 41-87 (293)
178 COG2081 Predicted flavoprotein 41.0 30 0.00065 31.7 3.3 28 46-75 5-32 (408)
179 cd02201 FtsZ_type1 FtsZ is a G 41.0 1.7E+02 0.0037 25.2 8.0 68 44-119 85-156 (304)
180 smart00046 DAGKc Diacylglycero 41.0 59 0.0013 24.1 4.5 32 47-79 52-87 (124)
181 TIGR02095 glgA glycogen/starch 40.9 2.7E+02 0.0059 25.0 13.0 67 104-180 360-433 (473)
182 PRK08727 hypothetical protein; 40.8 2E+02 0.0044 23.6 10.5 120 45-182 42-175 (233)
183 PRK02155 ppnK NAD(+)/NADH kina 40.5 1.9E+02 0.0041 25.0 8.1 62 12-77 4-95 (291)
184 COG2515 Acd 1-aminocyclopropan 40.5 1.4E+02 0.003 26.6 7.3 40 108-150 179-218 (323)
185 PRK05707 DNA polymerase III su 40.5 54 0.0012 28.9 4.8 84 102-185 64-160 (328)
186 PRK08887 nicotinic acid mononu 40.4 36 0.00078 27.1 3.4 71 109-183 98-169 (174)
187 cd01412 SIRT5_Af1_CobB SIRT5_A 40.1 60 0.0013 26.6 4.8 67 101-178 156-223 (224)
188 PRK14087 dnaA chromosomal repl 40.0 3E+02 0.0065 25.3 10.7 108 32-146 124-246 (450)
189 PF09314 DUF1972: Domain of un 40.0 67 0.0014 26.1 5.0 40 13-52 1-42 (185)
190 PRK06090 DNA polymerase III su 39.6 67 0.0015 28.3 5.3 84 102-185 66-162 (319)
191 PRK05593 rplR 50S ribosomal pr 39.6 59 0.0013 24.5 4.3 38 32-69 69-114 (117)
192 PF02608 Bmp: Basic membrane p 39.4 51 0.0011 28.3 4.4 45 32-77 175-221 (306)
193 PF11834 DUF3354: Domain of un 39.4 69 0.0015 21.9 4.2 35 111-151 19-53 (69)
194 PRK03708 ppnK inorganic polyph 39.4 87 0.0019 26.9 5.8 35 14-51 1-35 (277)
195 PRK08699 DNA polymerase III su 39.3 77 0.0017 27.8 5.6 64 122-185 94-167 (325)
196 PLN02896 cinnamyl-alcohol dehy 39.3 61 0.0013 27.9 5.0 39 1-50 1-39 (353)
197 PRK03372 ppnK inorganic polyph 39.2 2E+02 0.0043 25.2 8.1 62 11-77 3-104 (306)
198 PF00710 Asparaginase: Asparag 39.1 73 0.0016 27.7 5.4 37 108-146 71-107 (313)
199 PF00308 Bac_DnaA: Bacterial d 38.8 1.7E+02 0.0036 23.9 7.3 107 32-147 17-138 (219)
200 PRK03378 ppnK inorganic polyph 38.6 2.2E+02 0.0048 24.7 8.3 62 12-77 4-95 (292)
201 PRK15427 colanic acid biosynth 38.6 1E+02 0.0022 27.5 6.3 70 103-181 292-367 (406)
202 cd08184 Fe-ADH3 Iron-containin 38.6 2.1E+02 0.0046 25.3 8.4 12 109-120 81-92 (347)
203 PLN02586 probable cinnamyl alc 38.5 2.6E+02 0.0057 24.2 9.3 82 46-130 186-268 (360)
204 COG0716 FldA Flavodoxins [Ener 38.4 38 0.00083 25.9 3.2 33 13-48 1-33 (151)
205 COG2087 CobU Adenosyl cobinami 38.3 1.3E+02 0.0028 24.5 6.2 12 15-26 2-13 (175)
206 PRK13384 delta-aminolevulinic 38.1 2.9E+02 0.0064 24.6 10.8 146 21-180 137-305 (322)
207 KOG2968 Predicted esterase of 38.0 21 0.00045 36.1 1.9 45 35-81 829-884 (1158)
208 PRK06756 flavodoxin; Provision 38.0 54 0.0012 24.7 3.9 32 14-48 2-33 (148)
209 PRK05333 NAD-dependent deacety 37.9 29 0.00062 29.9 2.6 70 100-180 205-275 (285)
210 PF02698 DUF218: DUF218 domain 37.9 1.7E+02 0.0037 21.9 7.3 22 110-131 2-34 (155)
211 KOG1201 Hydroxysteroid 17-beta 37.9 40 0.00086 29.7 3.5 28 44-72 38-65 (300)
212 cd06353 PBP1_BmpA_Med_like Per 37.8 95 0.0021 25.9 5.8 42 32-76 166-207 (258)
213 COG0252 AnsB L-asparaginase/ar 37.6 59 0.0013 29.1 4.7 35 111-148 102-136 (351)
214 PRK04885 ppnK inorganic polyph 37.6 2.1E+02 0.0045 24.5 7.9 57 15-77 2-69 (265)
215 PF04230 PS_pyruv_trans: Polys 37.5 1.2E+02 0.0027 23.8 6.2 55 108-162 62-127 (286)
216 COG0549 ArcC Carbamate kinase 36.9 1E+02 0.0022 27.3 5.7 28 92-119 208-235 (312)
217 PLN02945 nicotinamide-nucleoti 36.9 98 0.0021 25.8 5.7 43 7-49 15-57 (236)
218 cd00578 L-fuc_L-ara-isomerases 36.7 3.3E+02 0.0071 24.7 12.2 37 108-149 62-98 (452)
219 PLN02275 transferase, transfer 36.5 1.4E+02 0.003 26.1 6.8 66 101-180 298-369 (371)
220 cd05212 NAD_bind_m-THF_DH_Cycl 36.5 2E+02 0.0043 22.2 8.7 102 13-128 28-131 (140)
221 cd06313 PBP1_ABC_sugar_binding 36.5 2.3E+02 0.0051 23.0 8.8 38 105-147 51-88 (272)
222 PRK05723 flavodoxin; Provision 36.4 41 0.00089 26.1 3.1 32 15-49 2-33 (151)
223 COG1152 CdhA CO dehydrogenase/ 36.2 4.3E+02 0.0093 25.9 10.3 155 15-183 502-698 (772)
224 PRK12446 undecaprenyldiphospho 36.1 1.1E+02 0.0024 26.9 6.1 121 13-151 1-126 (352)
225 PF12831 FAD_oxidored: FAD dep 36.0 39 0.00084 30.5 3.3 31 47-79 2-32 (428)
226 cd03798 GT1_wlbH_like This fam 35.9 2.3E+02 0.005 22.8 12.8 68 102-180 271-340 (377)
227 PRK05564 DNA polymerase III su 35.9 75 0.0016 27.3 4.9 68 118-185 70-147 (313)
228 TIGR01205 D_ala_D_alaTIGR D-al 35.7 55 0.0012 27.7 4.0 38 15-52 1-38 (315)
229 PRK02645 ppnK inorganic polyph 35.4 2.3E+02 0.0049 24.6 7.9 30 45-76 59-88 (305)
230 cd04260 AAK_AKi-DapG-BS AAK_AK 35.0 46 0.001 27.7 3.4 26 18-43 5-30 (244)
231 PRK14568 vanB D-alanine--D-lac 34.9 64 0.0014 28.1 4.4 36 14-49 4-39 (343)
232 PRK10834 vancomycin high tempe 34.9 1.2E+02 0.0025 25.9 5.8 69 108-178 43-133 (239)
233 PRK09860 putative alcohol dehy 34.8 1.4E+02 0.003 26.7 6.6 13 108-120 87-99 (383)
234 TIGR00147 lipid kinase, YegS/R 34.3 1.1E+02 0.0025 25.7 5.8 31 47-78 60-91 (293)
235 PLN02512 acetylglutamate kinas 34.3 66 0.0014 28.0 4.3 46 7-54 42-90 (309)
236 PF02645 DegV: Uncharacterised 34.1 2.9E+02 0.0063 23.3 9.0 68 105-181 75-150 (280)
237 COG3967 DltE Short-chain dehyd 34.0 53 0.0011 27.9 3.5 25 48-73 9-33 (245)
238 PRK14571 D-alanyl-alanine synt 33.8 92 0.002 26.4 5.1 34 15-48 2-35 (299)
239 cd03816 GT1_ALG1_like This fam 33.6 2.1E+02 0.0045 25.5 7.5 70 100-180 305-377 (415)
240 PRK07993 DNA polymerase III su 33.6 1E+02 0.0022 27.2 5.4 86 100-185 64-162 (334)
241 CHL00175 minD septum-site dete 33.6 1E+02 0.0022 25.8 5.3 43 3-48 5-47 (281)
242 PF05159 Capsule_synth: Capsul 33.5 34 0.00074 28.6 2.4 36 104-150 194-229 (269)
243 PRK01372 ddl D-alanine--D-alan 33.5 77 0.0017 26.7 4.6 36 15-50 6-41 (304)
244 PTZ00032 60S ribosomal protein 33.3 1.1E+02 0.0023 25.7 5.1 39 31-69 162-208 (211)
245 PF01256 Carb_kinase: Carbohyd 33.3 2.9E+02 0.0063 23.1 9.7 97 48-150 2-104 (242)
246 PRK05653 fabG 3-ketoacyl-(acyl 33.3 2.4E+02 0.0051 22.1 7.7 30 14-51 6-35 (246)
247 PRK01966 ddl D-alanyl-alanine 33.1 73 0.0016 27.7 4.4 36 14-49 4-39 (333)
248 TIGR01501 MthylAspMutase methy 33.0 1.3E+02 0.0029 23.1 5.4 41 35-76 19-59 (134)
249 PRK10125 putative glycosyl tra 33.0 71 0.0015 28.6 4.5 64 103-177 300-364 (405)
250 cd05312 NAD_bind_1_malic_enz N 32.8 1.9E+02 0.004 25.2 6.8 73 110-184 24-110 (279)
251 COG2085 Predicted dinucleotide 32.7 98 0.0021 25.9 4.9 48 13-71 1-48 (211)
252 PRK00654 glgA glycogen synthas 32.7 3.8E+02 0.0081 24.2 12.4 67 104-180 351-424 (466)
253 PRK00414 gmhA phosphoheptose i 32.7 1.9E+02 0.0041 23.2 6.6 30 28-57 28-57 (192)
254 TIGR00236 wecB UDP-N-acetylglu 32.6 2E+02 0.0043 24.8 7.1 71 93-180 257-330 (365)
255 cd04962 GT1_like_5 This family 32.4 1E+02 0.0022 25.9 5.2 66 104-180 265-332 (371)
256 TIGR00936 ahcY adenosylhomocys 32.4 3.8E+02 0.0082 24.5 9.0 87 46-150 197-284 (406)
257 PF13344 Hydrolase_6: Haloacid 32.3 1.1E+02 0.0024 21.9 4.6 43 138-180 29-76 (101)
258 PRK07764 DNA polymerase III su 32.2 79 0.0017 31.6 4.9 19 167-185 156-174 (824)
259 PRK10886 DnaA initiator-associ 32.2 2.7E+02 0.0058 22.7 7.4 61 49-129 116-177 (196)
260 cd06320 PBP1_allose_binding Pe 32.1 1.3E+02 0.0028 24.3 5.6 23 27-49 11-33 (275)
261 PRK05579 bifunctional phosphop 32.1 80 0.0017 28.7 4.6 73 108-180 81-179 (399)
262 PRK01231 ppnK inorganic polyph 31.9 2.9E+02 0.0063 23.9 7.9 61 13-77 4-94 (295)
263 PF13407 Peripla_BP_4: Peripla 31.8 1.1E+02 0.0023 24.5 5.0 40 104-148 50-89 (257)
264 KOG2683 Sirtuin 4 and related 31.6 70 0.0015 27.6 3.9 43 105-150 242-284 (305)
265 PRK06703 flavodoxin; Provision 31.5 62 0.0013 24.5 3.4 32 14-48 2-33 (151)
266 PRK00149 dnaA chromosomal repl 31.5 4E+02 0.0086 24.2 11.7 141 32-182 131-293 (450)
267 PRK00625 shikimate kinase; Pro 31.4 1.6E+02 0.0034 23.3 5.8 75 38-115 67-148 (173)
268 TIGR01753 flav_short flavodoxi 31.3 1.2E+02 0.0026 22.1 4.9 9 16-24 48-56 (140)
269 cd00432 Ribosomal_L18_L5e Ribo 31.3 1E+02 0.0022 22.2 4.4 38 32-69 57-102 (103)
270 cd04261 AAK_AKii-LysC-BS AAK_A 31.3 1.2E+02 0.0027 24.9 5.4 40 19-60 6-47 (239)
271 TIGR00762 DegV EDD domain prot 31.2 3.2E+02 0.007 23.0 8.2 66 106-180 74-147 (275)
272 PRK09271 flavodoxin; Provision 31.1 65 0.0014 24.9 3.5 31 15-48 2-32 (160)
273 cd04946 GT1_AmsK_like This fam 31.1 1.1E+02 0.0024 27.1 5.4 64 109-181 310-374 (407)
274 KOG3293 Small nuclear ribonucl 30.9 13 0.00029 28.4 -0.5 46 138-183 39-84 (134)
275 KOG0832 Mitochondrial/chloropl 30.9 1.5E+02 0.0033 25.3 5.8 45 28-72 91-135 (251)
276 CHL00162 thiG thiamin biosynth 30.6 3.6E+02 0.0078 23.4 10.5 105 12-132 106-210 (267)
277 PRK14075 pnk inorganic polypho 30.5 2.1E+02 0.0046 24.1 6.8 53 14-77 1-70 (256)
278 cd02191 FtsZ FtsZ is a GTPase 30.4 3.6E+02 0.0079 23.4 10.2 57 55-119 100-156 (303)
279 cd04180 UGPase_euk_like Eukary 30.3 1.4E+02 0.0029 25.5 5.6 58 112-180 2-74 (266)
280 PRK06703 flavodoxin; Provision 30.2 1.3E+02 0.0028 22.7 4.9 14 61-74 105-118 (151)
281 cd03132 GATase1_catalase Type 30.1 67 0.0014 23.9 3.3 34 111-147 64-103 (142)
282 COG0028 IlvB Thiamine pyrophos 29.9 1.2E+02 0.0026 28.7 5.6 38 111-152 428-467 (550)
283 cd01411 SIR2H SIR2H: Uncharact 29.7 53 0.0012 27.2 2.9 50 100-153 162-211 (225)
284 COG1042 Acyl-CoA synthetase (N 29.6 2.2E+02 0.0048 27.4 7.3 69 113-182 380-448 (598)
285 cd03813 GT1_like_3 This family 29.5 92 0.002 28.3 4.6 67 105-181 366-439 (475)
286 PF12146 Hydrolase_4: Putative 29.4 99 0.0021 21.2 3.8 39 8-50 10-48 (79)
287 PRK08058 DNA polymerase III su 29.2 85 0.0018 27.4 4.2 78 108-185 76-164 (329)
288 PRK07276 DNA polymerase III su 29.2 95 0.0021 27.0 4.4 84 102-185 64-158 (290)
289 cd08185 Fe-ADH1 Iron-containin 29.2 4E+02 0.0088 23.5 8.9 13 108-120 82-94 (380)
290 PRK08105 flavodoxin; Provision 28.8 1.2E+02 0.0026 23.3 4.6 42 33-74 67-120 (149)
291 COG0256 RplR Ribosomal protein 28.7 1.6E+02 0.0034 22.7 5.0 40 31-70 76-123 (125)
292 cd02115 AAK Amino Acid Kinases 28.6 1.2E+02 0.0027 24.5 4.9 39 19-58 4-43 (248)
293 PRK04155 chaperone protein Hch 28.6 58 0.0013 28.3 3.0 34 112-147 149-188 (287)
294 TIGR01752 flav_long flavodoxin 28.6 1.5E+02 0.0032 23.1 5.1 20 58-77 100-119 (167)
295 COG0148 Eno Enolase [Carbohydr 28.6 1.8E+02 0.0038 26.9 6.1 59 100-160 318-376 (423)
296 PF13500 AAA_26: AAA domain; P 28.5 95 0.0021 24.5 4.1 26 109-134 129-154 (199)
297 PRK00942 acetylglutamate kinas 28.3 71 0.0015 27.2 3.5 45 9-54 20-66 (283)
298 PRK08979 acetolactate synthase 28.3 3.5E+02 0.0077 25.3 8.4 85 33-121 195-284 (572)
299 cd03805 GT1_ALG2_like This fam 28.3 2.2E+02 0.0049 24.2 6.7 65 103-179 293-359 (392)
300 PRK07998 gatY putative fructos 28.2 4E+02 0.0086 23.1 9.0 30 100-129 188-217 (283)
301 PF00205 TPP_enzyme_M: Thiamin 28.0 2.5E+02 0.0053 20.7 6.7 104 36-150 3-114 (137)
302 COG4098 comFA Superfamily II D 27.9 4E+02 0.0086 24.5 8.1 64 14-80 89-155 (441)
303 PRK11780 isoprenoid biosynthes 27.8 70 0.0015 26.4 3.3 38 14-52 2-40 (217)
304 PRK07832 short chain dehydroge 27.8 3.4E+02 0.0073 22.1 7.5 87 14-118 1-87 (272)
305 PRK14557 pyrH uridylate kinase 27.6 92 0.002 26.3 4.0 41 13-53 4-53 (247)
306 PRK00087 4-hydroxy-3-methylbut 27.6 1.1E+02 0.0023 29.6 4.8 73 100-177 194-270 (647)
307 PF01202 SKI: Shikimate kinase 27.5 77 0.0017 24.2 3.3 32 111-148 63-94 (158)
308 TIGR02149 glgA_Coryne glycogen 27.3 1.2E+02 0.0027 25.7 4.9 40 103-150 274-315 (388)
309 cd03791 GT1_Glycogen_synthase_ 27.3 4.5E+02 0.0097 23.4 13.6 67 103-180 364-438 (476)
310 cd02072 Glm_B12_BD B12 binding 27.2 1.9E+02 0.0042 22.1 5.4 40 36-76 18-57 (128)
311 PRK07399 DNA polymerase III su 27.1 1.1E+02 0.0024 26.7 4.5 63 123-185 106-177 (314)
312 TIGR02076 pyrH_arch uridylate 27.1 78 0.0017 25.7 3.4 36 19-54 5-43 (221)
313 PF01965 DJ-1_PfpI: DJ-1/PfpI 27.0 59 0.0013 24.5 2.5 36 113-148 40-80 (147)
314 cd06300 PBP1_ABC_sugar_binding 26.8 1.7E+02 0.0038 23.4 5.5 16 109-124 60-75 (272)
315 PRK05866 short chain dehydroge 26.8 2.8E+02 0.006 23.3 6.9 31 14-52 41-71 (293)
316 cd03817 GT1_UGDG_like This fam 26.8 2.2E+02 0.0048 23.1 6.2 42 101-150 270-313 (374)
317 COG0703 AroK Shikimate kinase 26.8 2.8E+02 0.0061 22.3 6.5 94 35-130 62-166 (172)
318 COG4109 Predicted transcriptio 26.7 3E+02 0.0065 25.2 7.2 118 49-183 84-221 (432)
319 PRK07524 hypothetical protein; 26.7 3.6E+02 0.0078 24.9 8.1 86 32-122 189-276 (535)
320 cd04255 AAK_UMPK-MosAB AAK_UMP 26.6 99 0.0021 26.3 4.1 49 4-54 21-74 (262)
321 PF13580 SIS_2: SIS domain; PD 26.6 1.6E+02 0.0036 22.0 4.9 43 34-76 92-137 (138)
322 TIGR02467 CbiE precorrin-6y C5 26.5 3.3E+02 0.0072 21.6 9.1 117 32-151 55-179 (204)
323 COG0112 GlyA Glycine/serine hy 26.4 63 0.0014 29.7 2.9 40 32-71 291-340 (413)
324 cd04824 eu_ALAD_PBGS_cysteine_ 26.4 4.7E+02 0.01 23.3 12.2 145 23-180 133-302 (320)
325 PTZ00075 Adenosylhomocysteinas 26.4 4.4E+02 0.0095 24.7 8.5 86 48-151 258-344 (476)
326 COG0163 UbiX 3-polyprenyl-4-hy 26.4 3.2E+02 0.007 22.5 6.7 72 110-181 81-171 (191)
327 TIGR02482 PFKA_ATP 6-phosphofr 26.3 3.1E+02 0.0066 24.0 7.1 55 17-75 64-121 (301)
328 PTZ00286 6-phospho-1-fructokin 26.2 5.4E+02 0.012 24.0 9.4 101 45-145 89-211 (459)
329 PRK05568 flavodoxin; Provision 26.2 99 0.0021 22.9 3.6 32 14-48 2-33 (142)
330 PLN02825 amino-acid N-acetyltr 26.1 1.3E+02 0.0028 28.5 5.0 51 7-60 12-64 (515)
331 PRK05476 S-adenosyl-L-homocyst 26.1 2.6E+02 0.0056 25.7 6.9 86 47-150 215-301 (425)
332 PRK13371 4-hydroxy-3-methylbut 26.0 1.6E+02 0.0035 26.9 5.4 50 92-147 263-322 (387)
333 PRK06581 DNA polymerase III su 25.9 1.5E+02 0.0032 25.7 4.9 76 110-185 51-143 (263)
334 PRK09330 cell division protein 25.9 3.5E+02 0.0076 24.6 7.6 56 56-119 114-169 (384)
335 PRK07109 short chain dehydroge 25.8 3.1E+02 0.0066 23.6 7.1 55 14-76 9-63 (334)
336 KOG0503 Asparaginase [Amino ac 25.8 1.1E+02 0.0023 27.8 4.2 39 109-150 121-159 (368)
337 TIGR00253 RNA_bind_YhbY putati 25.7 1.7E+02 0.0036 21.3 4.6 46 135-180 12-66 (95)
338 PRK10669 putative cation:proto 25.7 5.5E+02 0.012 23.9 11.6 97 44-146 417-515 (558)
339 PRK08114 cystathionine beta-ly 25.7 3.1E+02 0.0067 24.8 7.3 82 100-187 67-154 (395)
340 PF00201 UDPGT: UDP-glucoronos 25.7 1.7E+02 0.0038 26.4 5.7 76 93-180 325-405 (500)
341 cd04246 AAK_AK-DapG-like AAK_A 25.6 1.7E+02 0.0036 24.1 5.2 34 19-53 6-41 (239)
342 TIGR02822 adh_fam_2 zinc-bindi 25.5 1.4E+02 0.0029 25.6 4.8 31 45-77 167-197 (329)
343 PRK09496 trkA potassium transp 25.4 2.3E+02 0.005 25.2 6.4 89 30-120 217-308 (453)
344 PRK06924 short chain dehydroge 25.2 1.2E+02 0.0027 24.2 4.3 29 13-49 1-29 (251)
345 PRK07035 short chain dehydroge 25.0 1.1E+02 0.0024 24.5 4.0 31 14-52 9-39 (252)
346 TIGR01137 cysta_beta cystathio 25.0 5.1E+02 0.011 23.2 10.9 47 32-78 158-206 (454)
347 KOG4321 Predicted phosphate ac 24.9 69 0.0015 26.3 2.6 33 97-129 64-97 (279)
348 PF03486 HI0933_like: HI0933-l 24.9 56 0.0012 29.7 2.4 27 47-75 3-29 (409)
349 PRK05441 murQ N-acetylmuramic 24.8 4.6E+02 0.0099 22.7 8.4 32 28-59 46-77 (299)
350 PF12641 Flavodoxin_3: Flavodo 24.6 1.4E+02 0.0031 23.5 4.4 52 14-67 68-121 (160)
351 PLN02740 Alcohol dehydrogenase 24.6 3.6E+02 0.0077 23.5 7.4 83 45-130 200-289 (381)
352 PF13614 AAA_31: AAA domain; P 24.5 1.7E+02 0.0038 21.6 4.7 32 14-48 1-32 (157)
353 PF13580 SIS_2: SIS domain; PD 24.4 2.9E+02 0.0063 20.6 6.0 41 28-70 19-59 (138)
354 COG2022 ThiG Uncharacterized e 24.4 4.6E+02 0.01 22.6 9.8 112 14-147 101-212 (262)
355 COG0394 Wzb Protein-tyrosine-p 24.2 2.2E+02 0.0048 21.8 5.3 53 13-69 2-58 (139)
356 TIGR01832 kduD 2-deoxy-D-gluco 24.2 1.2E+02 0.0026 24.2 4.0 31 14-52 6-36 (248)
357 PRK11761 cysM cysteine synthas 24.2 4.5E+02 0.0098 22.4 9.9 47 32-78 155-203 (296)
358 PRK10343 RNA-binding protein Y 24.1 2.3E+02 0.005 20.6 5.1 45 135-179 14-67 (97)
359 PF00890 FAD_binding_2: FAD bi 24.1 77 0.0017 27.9 3.0 29 47-77 2-30 (417)
360 PRK00481 NAD-dependent deacety 23.7 90 0.0019 26.0 3.2 69 101-180 169-238 (242)
361 cd08181 PPD-like 1,3-propanedi 23.6 3.1E+02 0.0068 24.1 6.8 13 108-120 82-94 (357)
362 cd07227 Pat_Fungal_NTE1 Fungal 23.6 63 0.0014 27.7 2.3 29 37-67 2-30 (269)
363 cd08175 G1PDH Glycerol-1-phosp 23.5 3.9E+02 0.0084 23.3 7.3 34 109-148 80-113 (348)
364 PRK03708 ppnK inorganic polyph 23.5 4.7E+02 0.01 22.4 7.7 30 45-77 59-88 (277)
365 PRK06756 flavodoxin; Provision 23.4 1.9E+02 0.0042 21.6 4.8 18 57-74 102-119 (148)
366 PRK09426 methylmalonyl-CoA mut 23.4 3.1E+02 0.0067 27.0 7.2 46 30-76 595-640 (714)
367 PRK05854 short chain dehydroge 23.4 1.2E+02 0.0025 25.9 4.0 19 34-52 27-45 (313)
368 COG0075 Serine-pyruvate aminot 23.4 2.1E+02 0.0046 26.0 5.7 53 27-80 33-91 (383)
369 PRK07102 short chain dehydroge 23.4 1.3E+02 0.0028 24.0 4.1 28 14-49 2-29 (243)
370 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.3 3E+02 0.0066 20.1 8.2 92 34-148 3-98 (153)
371 PRK05867 short chain dehydroge 23.3 3.9E+02 0.0085 21.4 7.4 63 14-84 10-72 (253)
372 PRK14106 murD UDP-N-acetylmura 23.3 2.8E+02 0.006 24.8 6.6 29 47-77 8-36 (450)
373 PRK09004 FMN-binding protein M 23.3 1.9E+02 0.0042 22.1 4.8 11 33-43 65-75 (146)
374 COG0569 TrkA K+ transport syst 23.2 4.2E+02 0.0092 21.7 7.5 97 48-150 4-103 (225)
375 cd07225 Pat_PNPLA6_PNPLA7 Pata 23.2 87 0.0019 27.2 3.1 31 35-67 5-35 (306)
376 cd08182 HEPD Hydroxyethylphosp 23.1 3.5E+02 0.0077 23.7 7.1 12 109-120 77-88 (367)
377 PRK08339 short chain dehydroge 23.1 1.3E+02 0.0027 24.8 4.0 29 15-51 10-38 (263)
378 PRK15454 ethanol dehydrogenase 23.1 5.5E+02 0.012 23.0 9.1 13 108-120 105-117 (395)
379 PRK13146 hisH imidazole glycer 23.1 2E+02 0.0044 23.3 5.2 12 106-117 149-160 (209)
380 PRK07677 short chain dehydroge 23.0 1.4E+02 0.0031 24.0 4.2 30 15-52 3-32 (252)
381 cd08551 Fe-ADH iron-containing 22.9 3.8E+02 0.0083 23.4 7.3 13 108-120 79-91 (370)
382 PRK06871 DNA polymerase III su 22.9 1.7E+02 0.0038 25.8 5.0 79 107-185 71-161 (325)
383 PRK13059 putative lipid kinase 22.8 1.9E+02 0.0041 24.6 5.2 30 47-77 59-89 (295)
384 cd08237 ribitol-5-phosphate_DH 22.7 3.3E+02 0.0071 23.3 6.7 31 45-77 165-197 (341)
385 cd08191 HHD 6-hydroxyhexanoate 22.7 1.3E+02 0.0027 26.9 4.2 13 108-120 78-90 (386)
386 PLN03013 cysteine synthase 22.6 6.1E+02 0.013 23.4 9.4 34 46-79 282-317 (429)
387 cd06318 PBP1_ABC_sugar_binding 22.6 2.2E+02 0.0047 23.0 5.3 38 105-147 51-88 (282)
388 TIGR03366 HpnZ_proposed putati 22.6 3.4E+02 0.0075 22.4 6.6 83 45-130 122-208 (280)
389 cd08189 Fe-ADH5 Iron-containin 22.6 3E+02 0.0064 24.4 6.5 14 107-120 81-94 (374)
390 PRK08177 short chain dehydroge 22.5 1.5E+02 0.0033 23.4 4.3 30 14-51 2-31 (225)
391 PF01116 F_bP_aldolase: Fructo 22.4 89 0.0019 27.1 3.0 110 27-150 109-237 (287)
392 cd06309 PBP1_YtfQ_like Peripla 22.4 1.8E+02 0.0039 23.5 4.7 38 105-147 51-88 (273)
393 PRK00856 pyrB aspartate carbam 22.4 5.2E+02 0.011 22.5 8.3 48 100-147 112-164 (305)
394 TIGR02699 archaeo_AfpA archaeo 22.2 1.5E+02 0.0033 23.8 4.2 69 109-177 78-173 (174)
395 TIGR02472 sucr_P_syn_N sucrose 22.2 2.6E+02 0.0056 25.0 6.1 58 111-180 342-402 (439)
396 PRK13011 formyltetrahydrofolat 22.2 69 0.0015 27.7 2.3 22 2-23 78-99 (286)
397 PRK08589 short chain dehydroge 22.2 1.3E+02 0.0029 24.7 4.0 54 14-76 7-60 (272)
398 PF03721 UDPG_MGDP_dh_N: UDP-g 22.1 1.1E+02 0.0025 24.4 3.4 10 107-116 74-83 (185)
399 TIGR01754 flav_RNR ribonucleot 22.0 1.2E+02 0.0026 22.7 3.4 31 15-48 2-32 (140)
400 PRK08217 fabG 3-ketoacyl-(acyl 22.0 1.4E+02 0.003 23.7 4.0 30 15-52 7-36 (253)
401 COG2242 CobL Precorrin-6B meth 22.0 1.2E+02 0.0027 24.8 3.6 122 34-164 24-153 (187)
402 cd06311 PBP1_ABC_sugar_binding 21.9 2.9E+02 0.0063 22.2 5.9 38 105-147 56-93 (274)
403 PRK09072 short chain dehydroge 21.9 1.4E+02 0.003 24.2 4.0 28 15-50 7-34 (263)
404 PRK12367 short chain dehydroge 21.9 1.4E+02 0.0031 24.5 4.1 30 46-76 16-45 (245)
405 PRK00207 sulfur transfer compl 21.9 2.2E+02 0.0047 21.4 4.8 33 15-48 2-34 (128)
406 PHA02448 hypothetical protein 21.8 94 0.002 24.4 2.7 57 98-163 133-189 (192)
407 cd04254 AAK_UMPK-PyrH-Ec UMP k 21.7 97 0.0021 25.5 3.0 39 16-54 4-50 (231)
408 PRK08303 short chain dehydroge 21.7 1.3E+02 0.0028 25.7 3.9 31 14-52 9-39 (305)
409 cd08193 HVD 5-hydroxyvalerate 21.7 3.2E+02 0.0069 24.1 6.5 13 108-120 82-94 (376)
410 PRK14076 pnk inorganic polypho 21.6 5.2E+02 0.011 24.5 8.2 64 10-77 287-380 (569)
411 PLN02974 adenosylmethionine-8- 21.6 2.8E+02 0.0061 27.8 6.6 53 110-162 215-267 (817)
412 PRK10840 transcriptional regul 21.6 2.6E+02 0.0057 21.9 5.5 40 139-180 80-122 (216)
413 PRK07062 short chain dehydroge 21.5 1.4E+02 0.003 24.2 3.9 31 14-52 9-39 (265)
414 PLN02271 serine hydroxymethylt 21.5 1E+02 0.0022 29.8 3.3 38 33-70 443-490 (586)
415 PF05690 ThiG: Thiazole biosyn 21.5 85 0.0018 26.9 2.6 41 101-147 165-205 (247)
416 PRK14072 6-phosphofructokinase 21.5 4.1E+02 0.0088 24.3 7.2 55 17-75 73-138 (416)
417 PRK00358 pyrH uridylate kinase 21.4 97 0.0021 25.3 3.0 37 17-54 5-50 (231)
418 cd04249 AAK_NAGK-NC AAK_NAGK-N 21.4 1.4E+02 0.0031 24.8 4.0 40 16-55 2-43 (252)
419 PF00258 Flavodoxin_1: Flavodo 21.4 91 0.002 23.0 2.6 36 14-50 88-123 (143)
420 PRK06180 short chain dehydroge 21.4 1.5E+02 0.0032 24.4 4.1 31 14-52 5-35 (277)
421 cd00401 AdoHcyase S-adenosyl-L 21.4 3.7E+02 0.008 24.6 6.9 71 46-126 204-274 (413)
422 KOG3974 Predicted sugar kinase 21.4 5.7E+02 0.012 22.5 9.6 51 101-154 93-146 (306)
423 PRK07308 flavodoxin; Validated 21.3 1.2E+02 0.0027 22.7 3.3 30 15-47 3-32 (146)
424 PLN00141 Tic62-NAD(P)-related 21.3 1.7E+02 0.0038 23.7 4.5 30 13-50 17-46 (251)
425 PRK12481 2-deoxy-D-gluconate 3 21.0 1.4E+02 0.003 24.2 3.8 52 14-75 9-60 (251)
426 PF02729 OTCace_N: Aspartate/o 21.0 3.9E+02 0.0084 20.5 7.6 76 62-156 58-134 (142)
427 cd03147 GATase1_Ydr533c_like T 21.0 68 0.0015 26.7 1.9 33 113-147 97-135 (231)
428 cd01408 SIRT1 SIRT1: Eukaryoti 20.8 1E+02 0.0023 25.6 3.0 68 100-178 166-235 (235)
429 COG0240 GpsA Glycerol-3-phosph 20.8 1.4E+02 0.003 26.6 3.9 43 13-64 1-43 (329)
430 PRK07132 DNA polymerase III su 20.8 1.7E+02 0.0036 25.5 4.4 73 113-185 59-144 (299)
431 KOG4169 15-hydroxyprostaglandi 20.7 5.5E+02 0.012 22.1 7.7 60 45-105 6-70 (261)
432 cd01452 VWA_26S_proteasome_sub 20.7 2.3E+02 0.0051 22.9 5.0 49 15-66 109-162 (187)
433 PRK15411 rcsA colanic acid cap 20.7 3.3E+02 0.0072 21.8 5.9 42 139-180 77-119 (207)
434 smart00870 Asparaginase Aspara 20.7 1.4E+02 0.003 26.2 3.9 35 109-145 77-111 (323)
435 PRK06457 pyruvate dehydrogenas 20.6 6.9E+02 0.015 23.2 8.9 85 33-121 184-271 (549)
436 PRK08264 short chain dehydroge 20.6 4.2E+02 0.0092 20.8 7.6 29 46-75 8-37 (238)
437 PRK05723 flavodoxin; Provision 20.6 2E+02 0.0043 22.3 4.4 16 30-45 101-116 (151)
438 PTZ00489 glutamate 5-kinase; P 20.6 1.4E+02 0.003 25.5 3.8 42 13-54 8-55 (264)
439 PRK00071 nadD nicotinic acid m 20.5 1.5E+02 0.0032 23.8 3.8 29 13-41 3-31 (203)
440 COG1028 FabG Dehydrogenases wi 20.5 1.5E+02 0.0032 23.7 3.9 31 14-52 6-36 (251)
441 cd04239 AAK_UMPK-like AAK_UMPK 20.5 1E+02 0.0022 25.2 2.9 22 110-131 117-142 (229)
442 cd06310 PBP1_ABC_sugar_binding 20.5 2.9E+02 0.0063 22.1 5.6 38 105-147 53-90 (273)
443 cd03796 GT1_PIG-A_like This fa 20.4 3.2E+02 0.007 23.7 6.2 41 102-150 262-304 (398)
444 PRK15482 transcriptional regul 20.4 5.2E+02 0.011 21.6 10.4 101 35-157 126-228 (285)
445 TIGR03087 stp1 sugar transfera 20.4 1.8E+02 0.004 25.3 4.7 64 106-180 294-358 (397)
446 cd02071 MM_CoA_mut_B12_BD meth 20.4 3.5E+02 0.0076 19.7 8.9 41 35-76 17-57 (122)
447 PRK07152 nadD putative nicotin 20.4 1.2E+02 0.0027 26.6 3.5 28 15-42 2-29 (342)
448 PF03358 FMN_red: NADPH-depend 20.3 2.2E+02 0.0047 21.2 4.5 49 101-149 62-116 (152)
449 KOG2387 CTP synthase (UTP-ammo 20.3 98 0.0021 29.1 2.9 52 105-160 359-414 (585)
450 cd04253 AAK_UMPK-PyrH-Pf AAK_U 20.2 92 0.002 25.4 2.6 35 19-54 6-44 (221)
451 PRK07814 short chain dehydroge 20.2 1.6E+02 0.0035 24.0 4.0 31 14-52 11-41 (263)
452 PRK09536 btuD corrinoid ABC tr 20.1 2.6E+02 0.0056 25.4 5.6 71 58-128 279-357 (402)
453 cd06301 PBP1_rhizopine_binding 20.1 2.8E+02 0.0061 22.1 5.5 37 106-147 53-89 (272)
454 PRK08273 thiamine pyrophosphat 20.1 6.2E+02 0.013 23.9 8.4 86 32-121 196-284 (597)
455 PRK08210 aspartate kinase I; R 20.1 1.3E+02 0.0028 26.9 3.7 40 15-54 4-45 (403)
456 PRK03170 dihydrodipicolinate s 20.0 5.4E+02 0.012 21.7 7.7 65 15-80 38-107 (292)
457 TIGR02075 pyrH_bact uridylate 20.0 98 0.0021 25.6 2.7 30 101-131 112-145 (233)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=6.8e-49 Score=317.19 Aligned_cols=167 Identities=41% Similarity=0.732 Sum_probs=157.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV 93 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~ 93 (187)
++|||||||+.+.+++|++.|++||++||++|+.||||||..|+|++++++|+++||.|+||+|..+..++.+++..++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999996699999999999999999999999887778888888899
Q ss_pred eecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCcCC----
Q 029797 94 RPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSLSQ---- 167 (187)
Q Consensus 94 ~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i~~---- 167 (187)
+.+++|++||.+|++.||+||+||||+|||+|++++|+|.|++.|+||++++|.+|| ++.+|++++++.+++..
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 899999999999999999999999999999999999999999999999999999988 58999999999988765
Q ss_pred ----CCCHHHHHHHHHh
Q 029797 168 ----HQTLKNLFKNLRS 180 (187)
Q Consensus 168 ----~~t~~e~v~~l~~ 180 (187)
.+||+|++++|++
T Consensus 161 ~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQN 177 (178)
T ss_pred cEEEcCCHHHHHHHHHh
Confidence 4999999999975
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=268.25 Aligned_cols=169 Identities=34% Similarity=0.566 Sum_probs=149.1
Q ss_pred CcceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCC
Q 029797 12 RFKRVCVFCGSSTGKRNC-YSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETV 90 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~-~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~ 90 (187)
.+++|||||||+...+++ |++.|++||++||++|+.|++||++ |+|+|+++||.++||.|+||+|......+.++...
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~ 91 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEV 91 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcccc
Confidence 467999999999877776 9999999999999999888888876 99999999999999999999998776555455556
Q ss_pred ceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCC--CCcEEEEcCCCC--chHHHHH-hHHhCCCc
Q 029797 91 GEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIH--DKPVCVANKPKS--PLMMALS-SLLSATSL 165 (187)
Q Consensus 91 ~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~--~kPvill~~~g~--~l~~~~~-~~~~~~~i 165 (187)
++++...+|++||..|+++|||||+||||+||++|++++|+|.|++.| .+|.++++.++| ++..+++ +++.++++
T Consensus 92 ~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i 171 (205)
T COG1611 92 IELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEGLI 171 (205)
T ss_pred ceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhhcC
Confidence 788899999999999999999999999999999999999999999988 899889999998 4788888 88888776
Q ss_pred CC--------CCCHHHHHHHHHhh
Q 029797 166 SQ--------HQTLKNLFKNLRST 181 (187)
Q Consensus 166 ~~--------~~t~~e~v~~l~~~ 181 (187)
.. .+|++++++.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~ 195 (205)
T COG1611 172 SEADRELLIVVDDAEEAIDAILKY 195 (205)
T ss_pred ChhhhhheeeecCHHHHHHHHHHh
Confidence 54 49999988887653
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=2.1e-38 Score=251.84 Aligned_cols=153 Identities=25% Similarity=0.347 Sum_probs=125.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCce
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGE 92 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~ 92 (187)
|++|||||||+ .+|.|++.|++||++||++|+.|||||+. |+|++++++|+++||+|+||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999988 47899999999999999999999998876 99999999999999999999998653 2333444
Q ss_pred EeecCCH-HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc--hHHHH--HhHHhCCCcCC
Q 029797 93 VRPVADM-HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP--LMMAL--SSLLSATSLSQ 167 (187)
Q Consensus 93 ~~~~~~m-~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~--l~~~~--~~~~~~~~i~~ 167 (187)
..+.+++ +.||++|+++||++|++|||+|||+|++++|+ ++||++++|.+||| +++++ +.......+..
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~~~~~~~~~~~~~~ 147 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQVLIEGVYLDERVIV 147 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHHHhccccccceeEe
Confidence 5555555 88999999999999999999999999999997 48999999999984 44332 11122234455
Q ss_pred CCCHHHHHHHH
Q 029797 168 HQTLKNLFKNL 178 (187)
Q Consensus 168 ~~t~~e~v~~l 178 (187)
.+||+|+++++
T Consensus 148 ~~~~~e~~~~~ 158 (159)
T TIGR00725 148 EITPAEAVKLA 158 (159)
T ss_pred cCCHHHHHHhh
Confidence 69999999875
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=1.6e-33 Score=217.56 Aligned_cols=121 Identities=40% Similarity=0.611 Sum_probs=111.9
Q ss_pred HHHHHHHHHhcCCeEEEEeCccccc-ccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhC
Q 029797 58 MGLVSKAVHHGGGNVIGIIPRTLMN-KEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLG 136 (187)
Q Consensus 58 M~a~~~gA~~~gG~viGI~p~~~~~-~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg 136 (187)
|+|+++||+++||.|+||+|+.+.+ ++.+++.+++++.+++|++||++|+++||++|++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 677788888999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEcCCCC--chHHHHHhHHhCCCcCC--------CCCHHHHHHHH
Q 029797 137 IHDK-PVCVANKPKS--PLMMALSSLLSATSLSQ--------HQTLKNLFKNL 178 (187)
Q Consensus 137 ~~~k-Pvill~~~g~--~l~~~~~~~~~~~~i~~--------~~t~~e~v~~l 178 (187)
.+++ |++++|.+|| ++.++++.+.+++++.. .+||||++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8877 9999999987 58999999999988764 49999999986
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.73 E-value=2.9e-16 Score=130.77 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=123.2
Q ss_pred ccccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccc---
Q 029797 5 GKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLM--- 81 (187)
Q Consensus 5 ~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~--- 81 (187)
|......+ +.|+|.| +|.. ++...+.++++++.|+++|++||+|++. |+|.++.++|+++||.+|+|+|..+.
T Consensus 37 Gn~~ll~~-~~iaIvG-sR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~y 112 (220)
T TIGR00732 37 GDLPLLSQ-RKVAIVG-TRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIY 112 (220)
T ss_pred CCcccccC-CeEEEEc-CCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCC
Confidence 44444444 6899995 5644 4667789999999999999999999987 99999999999999999999987652
Q ss_pred ccc-------ccCCC---Cce-----EeecCCHHHHHHHHHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEE
Q 029797 82 NKE-------ITGET---VGE-----VRPVADMHQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCV 144 (187)
Q Consensus 82 ~~e-------~~~~~---~~~-----~~~~~~m~~R~~~m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvil 144 (187)
|.+ ...+. +++ ......|..||+++...||++||+..+ .||+..+..++.+ +|||..
T Consensus 113 p~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~ 186 (220)
T TIGR00732 113 PRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFA 186 (220)
T ss_pred chhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEE
Confidence 221 00111 011 112346789999999999999999987 7999999988854 899999
Q ss_pred EcCCCC-chHHHHHhHHhCCCcCCCCCHHHHHHH
Q 029797 145 ANKPKS-PLMMALSSLLSATSLSQHQTLKNLFKN 177 (187)
Q Consensus 145 l~~~g~-~l~~~~~~~~~~~~i~~~~t~~e~v~~ 177 (187)
+-.+-+ +..+-...|+++|. ....+++|+++.
T Consensus 187 ~pg~~~~~~~~G~~~Li~~GA-~~i~~~~d~~~~ 219 (220)
T TIGR00732 187 YPGDLNSPESDGCHKLIEQGA-ALITSAKDILET 219 (220)
T ss_pred EcCCCCCccchHHHHHHHCCC-EEECCHHHHHHh
Confidence 865544 45566788999885 566788888764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.47 E-value=1.7e-12 Score=107.56 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=90.5
Q ss_pred ccccCCC-CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccc--
Q 029797 5 GKIQKNS-RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLM-- 81 (187)
Q Consensus 5 ~~~~~~~-~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~-- 81 (187)
|..+... ..+.|+|.| ||.. ++...+.++++++.|+++|++||+|+.. |++.++.++|+++||.+|.|+|..+.
T Consensus 35 G~~~ll~~~~~~iaIvG-sR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~ 111 (212)
T PF02481_consen 35 GNLSLLNNKQPSIAIVG-SRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNI 111 (212)
T ss_dssp --TT-GGGGS-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-
T ss_pred CCCchhcccCceEEEEc-CCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccc
Confidence 4445554 356899995 5654 5778899999999999999999999987 99999999999999999999986652
Q ss_pred -cccc---c-----CCC-------CceEeecCCHHHHHHHHHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEE
Q 029797 82 -NKEI---T-----GET-------VGEVRPVADMHQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVC 143 (187)
Q Consensus 82 -~~e~---~-----~~~-------~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvi 143 (187)
|.+. . ... ...-.....+..||+++...||++||+.-+ .||++-+-.++.+ +|||.
T Consensus 112 yP~~n~~l~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~ 185 (212)
T PF02481_consen 112 YPKENRELAERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVF 185 (212)
T ss_dssp SSGGGHHHHHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EE
T ss_pred cchhhHHHHHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEE
Confidence 3221 0 111 011122346789999999999999999754 7999999988865 79999
Q ss_pred EEcCCCC-chHHHHHhHHhCCC
Q 029797 144 VANKPKS-PLMMALSSLLSATS 164 (187)
Q Consensus 144 ll~~~g~-~l~~~~~~~~~~~~ 164 (187)
++...-+ +....-..|++.|.
T Consensus 186 ~vp~~~~~~~~~G~~~Li~~GA 207 (212)
T PF02481_consen 186 AVPGPIDDPNSEGNNELIKEGA 207 (212)
T ss_dssp E----TT-GGGHHHHHHHHTT-
T ss_pred EEeCCCCCcccHHHHHHHHcCC
Confidence 8744433 34566677777763
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.45 E-value=4e-12 Score=113.27 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=122.1
Q ss_pred ccccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccc---c
Q 029797 5 GKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL---M 81 (187)
Q Consensus 5 ~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~---~ 81 (187)
|.....++ +.|+|+| ||.. ++...+.++++++.|+++|++||+|++. |++.++.++|+++||.+|+|++..+ +
T Consensus 100 G~~~~l~~-~~iaiVG-sR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~Y 175 (374)
T PRK10736 100 GELAALHS-PQLAVVG-SRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIY 175 (374)
T ss_pred CCHHHccC-CeEEEEC-CCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccC
Confidence 44443333 5799995 5654 5677789999999999999999999987 9999999999999999999987554 2
Q ss_pred ccc-------c-cCC-------CCceEeecCCHHHHHHHHHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEE
Q 029797 82 NKE-------I-TGE-------TVGEVRPVADMHQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCV 144 (187)
Q Consensus 82 ~~e-------~-~~~-------~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvil 144 (187)
|++ . ... +...-....+|..||+++...|+++||+--+ +|||.-.-.++. .+|+|..
T Consensus 176 P~~n~~L~~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~Vfa 249 (374)
T PRK10736 176 PRRHARLAESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFA 249 (374)
T ss_pred CHhHHHHHHHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEE
Confidence 322 1 001 0011112357899999999999999999765 799888777764 3899988
Q ss_pred EcCCCC-chHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 145 ANKPKS-PLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 145 l~~~g~-~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
+-..-+ +..+-..+|+.+| -....+++|+++.+.
T Consensus 250 vPG~i~~~~s~G~n~LI~~G-A~lv~~~~Di~~~l~ 284 (374)
T PRK10736 250 LPGPIGNPGSEGPHWLIKQG-AYLVTSPEDILENLQ 284 (374)
T ss_pred EcCCCCCccchhHHHHHHCC-CEEeCCHHHHHHHhh
Confidence 854444 4556677888888 466678888888774
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.30 E-value=8e-11 Score=104.15 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=120.5
Q ss_pred ccccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccc---c
Q 029797 5 GKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL---M 81 (187)
Q Consensus 5 ~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~---~ 81 (187)
|.....+. +.++|+| ||.. +....+.++++++.|+++|++||+|+.. |++.++.++|++++|++|+|+...+ +
T Consensus 104 Gnl~ll~~-~~vaIVG-sR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iY 179 (350)
T COG0758 104 GNLDLLEA-PSVAIVG-SRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIY 179 (350)
T ss_pred cCHhHhcc-CceEEEe-CCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccC
Confidence 33333444 6899995 6655 4677899999999999999999999998 9999999999999999999986544 3
Q ss_pred cccc-------cCC-------CCceEeecCCHHHHHHHHHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 82 NKEI-------TGE-------TVGEVRPVADMHQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 82 ~~e~-------~~~-------~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
|++. ..+ +...-+...+|+.||++....||+++|+-.+ +|+|.=.-.++.. ++.|..+
T Consensus 180 P~~n~~l~~~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Aleq------gR~Vfav 253 (350)
T COG0758 180 PRENIKLAEKIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQ------GRDVFAV 253 (350)
T ss_pred ChhhHHHHHHHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHHc------CCeeEEc
Confidence 3221 011 1112223458899999999999999999877 7998877777643 6777766
Q ss_pred cCCCC-chHHHHHhHHhCCCcCCCCCHHHHHHHHHhhcc
Q 029797 146 NKPKS-PLMMALSSLLSATSLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 146 ~~~g~-~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~~~ 183 (187)
-.+=+ +...=...++.+| .....+.+++++.+...+.
T Consensus 254 Pg~~~~~~s~G~~~LI~~G-A~lv~~~~dil~~l~~~~~ 291 (350)
T COG0758 254 PGSIDNPRSEGCNKLIKEG-AKLVTSAEDILEELNALLV 291 (350)
T ss_pred CCCcccccccchHHHHHcc-chhcccHHHHHHHhhhhcc
Confidence 54433 3334446677777 3445555777776665443
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=97.52 E-value=0.0013 Score=51.62 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=54.0
Q ss_pred EEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccc-cCCCCc-eEeecCCHHHHHHHHHHhCCEEEEeCCC---hhh
Q 029797 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEI-TGETVG-EVRPVADMHQRKAEMARHSDCFIALPGG---YGT 122 (187)
Q Consensus 48 lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~-~~~~~~-~~~~~~~m~~R~~~m~~~sDa~IvlpGG---~GT 122 (187)
||+||- +|++.|+-+.|+++|-..=|-.|.-...++- -+..|. ......+...|.++.++-||+.++|-=| -||
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 688985 5999999999999987777777766543332 122222 2223467899999999999997777644 267
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 123 LEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 123 L~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
.--+. ++. .|.||+.+++....
T Consensus 80 ~lT~~--~a~----~~~KP~l~i~~~~~ 101 (145)
T PF12694_consen 80 ALTVE--FAR----KHGKPCLHIDLSIP 101 (145)
T ss_dssp HHHHH--HHH----HTT--EEEETS-HH
T ss_pred HHHHH--HHH----HhCCCEEEEecCcc
Confidence 33332 222 57999999865544
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=96.35 E-value=0.012 Score=43.47 Aligned_cols=48 Identities=31% Similarity=0.358 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhCCEEEEeCCC----hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc
Q 029797 98 DMHQRKAEMARHSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVCVANKPKSP 151 (187)
Q Consensus 98 ~m~~R~~~m~~~sDa~IvlpGG----~GTL~El~~a~~~~~lg~~~kPvill~~~g~~ 151 (187)
...+|....++.||++|+.-.+ .||.-|+..|+.+ +|||+++..+..+
T Consensus 50 ~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d~~~ 101 (113)
T PF05014_consen 50 EIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECCCCT
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcCCcc
Confidence 4578889999999999988776 8999999999865 8999999877553
No 11
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=96.27 E-value=0.15 Score=41.28 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHH---HHCCCeE-EEcCCcccHHHHHHHHHHhcCC-----eEEEEeCcccccccccCC--------
Q 029797 26 KRNCYSDAAIDLAHEL---VARRLDL-VYGGGSIGLMGLVSKAVHHGGG-----NVIGIIPRTLMNKEITGE-------- 88 (187)
Q Consensus 26 ~~~~~~~~A~~lG~~l---a~~g~~l-v~GGg~~GlM~a~~~gA~~~gG-----~viGI~p~~~~~~e~~~~-------- 88 (187)
.+|........|-+.| -++|+.- ++||.. |+.--+++-+++-.. +.+-++|-...+..|...
T Consensus 20 ~~~~~~~ik~~L~~~i~~lie~G~~~fi~Ggal-G~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~i 98 (177)
T PF06908_consen 20 KDPKIQVIKKALKKQIIELIEEGVRWFITGGAL-GVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSI 98 (177)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTT--EEEE---T-THHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHCCCCEEEECCcc-cHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHH
Confidence 3555444444444433 3467765 777765 999999999998543 555666743332222110
Q ss_pred --CCceEeec--------CCHHHHHHHHHHhCCEEEEeCCC-----hhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 89 --TVGEVRPV--------ADMHQRKAEMARHSDCFIALPGG-----YGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 89 --~~~~~~~~--------~~m~~R~~~m~~~sDa~IvlpGG-----~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
..+.+..+ .-|..||+.|+++||.+|++--| ....-+....... .++.||.++..
T Consensus 99 l~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~----~~~y~i~~I~~ 168 (177)
T PF06908_consen 99 LEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQE----QKGYPIDLIDP 168 (177)
T ss_dssp HHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHH----HH---EEEE-H
T ss_pred HHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhh----ccCCeEEEecH
Confidence 11222222 24579999999999999998543 2332233322221 24788888753
No 12
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.17 E-value=0.28 Score=50.19 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=85.3
Q ss_pred ceEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcC-----CeE--EEEeCcccc---
Q 029797 14 KRVCVFCGSSTGK-RNCYSDAAID-LAHELVARRLDLVYGGGSIGLMGLVSKAVHHGG-----GNV--IGIIPRTLM--- 81 (187)
Q Consensus 14 ~~I~Vfggs~~~~-~~~~~~~A~~-lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~g-----G~v--iGI~p~~~~--- 81 (187)
..|.|-||...-. .|.+.+.-++ |-+..-..|.-|+|||-..|+|.-+..++++++ +++ |||-|=-..
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr 198 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNR 198 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeech
Confidence 3799999887554 3455433333 333333469999999999999999999999864 233 666551111
Q ss_pred ----ccc---------cc-------CCCCceEeecCC---------HHHHHHHHHHh------CC-------EEEEeCCC
Q 029797 82 ----NKE---------IT-------GETVGEVRPVAD---------MHQRKAEMARH------SD-------CFIALPGG 119 (187)
Q Consensus 82 ----~~e---------~~-------~~~~~~~~~~~~---------m~~R~~~m~~~------sD-------a~IvlpGG 119 (187)
..+ .+ ++..+..+.+++ ..-|+++=--. +- +++++.||
T Consensus 199 ~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg 278 (1381)
T KOG3614|consen 199 DDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGG 278 (1381)
T ss_pred hhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCC
Confidence 000 01 122234444321 12333321111 11 57889999
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHh
Q 029797 120 YGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSS 158 (187)
Q Consensus 120 ~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~ 158 (187)
.+|+.-+.+..+. ..+.|++++...|- .+..+...
T Consensus 279 ~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~ 315 (1381)
T KOG3614|consen 279 PNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHE 315 (1381)
T ss_pred chHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHH
Confidence 9999999877643 34679999999988 34444433
No 13
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=96.11 E-value=0.11 Score=40.38 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCEEEEeCCC-hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 100 HQRKAEMARHSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG-~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
..|.+.+++.||.+||.-|- +=-++-.|.+=.-. ..+||+|++....- ||++. +.....-++||+.+++
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~---AlgKplI~lh~~~~~HpLKEv-----da~A~a~~et~~Qvv~ 134 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA---ALGKPLITLHPEELHHPLKEV-----DAAALAVAETPEQVVE 134 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-----hHhhHhhhCCHHHHHH
Confidence 68999999999999998776 44444444442222 23899999977655 44432 2234455799999999
Q ss_pred HHH
Q 029797 177 NLR 179 (187)
Q Consensus 177 ~l~ 179 (187)
.|+
T Consensus 135 iL~ 137 (141)
T PF11071_consen 135 ILR 137 (141)
T ss_pred HHH
Confidence 887
No 14
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=96.03 E-value=0.064 Score=37.11 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=44.9
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcc
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVAR-RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~-g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~ 79 (187)
+|. |+|+|.-.|-+.. -..|-+..++. ...||+||++.|....+.+-|.+.|-.++-+.|++
T Consensus 5 rVl-i~GgR~~~D~~~i--~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 5 RVL-ITGGRDWTDHELI--WAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred EEE-EEECCccccHHHH--HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 444 5677777655543 44455666665 67789999966999999999999997777766554
No 15
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.86 E-value=0.2 Score=44.79 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC---chHHHHHhHHhCCC---cCCCC
Q 029797 96 VADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS---PLMMALSSLLSATS---LSQHQ 169 (187)
Q Consensus 96 ~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~---~l~~~~~~~~~~~~---i~~~~ 169 (187)
+..|.......+..||.+|-=+| ..|+.|+..+ ++|.|++-.-.. .=....+.|.++|. +...+
T Consensus 239 v~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a~---------g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~ 308 (357)
T COG0707 239 VLPFIDDMAALLAAADLVISRAG-ALTIAELLAL---------GVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSE 308 (357)
T ss_pred EeeHHhhHHHHHHhccEEEeCCc-ccHHHHHHHh---------CCCEEEeCCCCCccchHHHHHHHHHhCCCEEEecccc
Confidence 33444455566778999887765 5799999843 899999866554 12234455667653 33444
Q ss_pred -CHHHHHHHHHh
Q 029797 170 -TLKNLFKNLRS 180 (187)
Q Consensus 170 -t~~e~v~~l~~ 180 (187)
|++++.+.|.+
T Consensus 309 lt~~~l~~~i~~ 320 (357)
T COG0707 309 LTPEKLAELILR 320 (357)
T ss_pred CCHHHHHHHHHH
Confidence 78888887765
No 16
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.49 E-value=0.63 Score=40.63 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
..-..++..||++|.-+|| .|+.|. +.. ++|+|+++..+..-....+.+.+.|......+++++.+.|..
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~EA---~a~------g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ 334 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLSEA---AAL------GVPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEA 334 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHHHH---HHh------CCCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHH
Confidence 3345567899998865554 465554 432 899988764332111222334445554445666666665543
No 17
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=95.30 E-value=0.53 Score=41.55 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 103 KAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 103 ~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
-..++..||++|.-+| .+|+.|.. + .++|+|+.+.-...=....+.+.+.|......|++++.+.|.+
T Consensus 276 ~~~l~~aaDv~V~~~g-~~ti~EAm---a------~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ 343 (382)
T PLN02605 276 MEEWMGACDCIITKAG-PGTIAEAL---I------RGLPIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAE 343 (382)
T ss_pred HHHHHHhCCEEEECCC-cchHHHHH---H------cCCCEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHH
Confidence 4456789999997555 47866654 2 3899999874222101122334444544444777777766654
No 18
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=95.28 E-value=0.28 Score=38.20 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCEEEEeCCC-hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 100 HQRKAEMARHSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG-~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
..|-+.+++.||.+||.-|- +=-++-.|.+=.-. ..+||+|++....- +|++.- ...+.-.+||+.+++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEvd-----aaA~avaetp~Qvv~ 137 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEVD-----NKAQAVVETPEQAIE 137 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHHh-----HHHHHHhcCHHHHHH
Confidence 67899999999999998776 45555555443222 23799999977654 444322 223345699999999
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|+=
T Consensus 138 iL~Y 141 (144)
T TIGR03646 138 TLKY 141 (144)
T ss_pred HHHH
Confidence 9873
No 19
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=95.25 E-value=0.39 Score=42.70 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.+-..++..||++|.=|||. |+.|.. + .++|+|+.+..+..=.....-+.+.|.....+|++++.+.|.+
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-tl~EA~---a------~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ 334 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-TISEGL---A------RCIPMIFLNPAPGQELENALYFEEKGFGKIADTPEEAIKIVAS 334 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-HHHHHH---H------hCCCEEECCCCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHH
Confidence 34456789999999877764 755554 3 2899999875432111122233344544445666666665543
No 20
>PRK13660 hypothetical protein; Provisional
Probab=94.91 E-value=1 Score=36.72 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=61.8
Q ss_pred HHHHHHHHHCCCe-EEEcCCcccHHHHHHHHHHhcC-----CeEEEEeCcccccccccC----------CCCceEeec--
Q 029797 35 IDLAHELVARRLD-LVYGGGSIGLMGLVSKAVHHGG-----GNVIGIIPRTLMNKEITG----------ETVGEVRPV-- 96 (187)
Q Consensus 35 ~~lG~~la~~g~~-lv~GGg~~GlM~a~~~gA~~~g-----G~viGI~p~~~~~~e~~~----------~~~~~~~~~-- 96 (187)
++|-+.+. .|+. +++||.. |+.--+++-+++-. -+.+-++|-......|.. ...+.+..+
T Consensus 33 ~~l~~~~e-~G~~wfi~ggal-G~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALLE-EGLEWVIISGQL-GVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHHH-CCCCEEEECCcc-hHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 34444444 4655 4777765 99999999999853 345556663322222211 011122211
Q ss_pred ------CCHHHHHHHHHHhCCEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 97 ------ADMHQRKAEMARHSDCFIALPGG---YGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 97 ------~~m~~R~~~m~~~sDa~IvlpGG---~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
.-|..||+.|+++||.+|++--| -||---+-.|-. +--.++.||.++
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~k--~~~~~~y~i~~I 166 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAKK--KQEKEDYPLDLI 166 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHHH--hhhccCceEEEe
Confidence 13789999999999999998544 244433333221 111458998888
No 21
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.85 E-value=2.2 Score=36.34 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC---chHHHHHhHHhCC--CcCCCC--CHHH
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS---PLMMALSSLLSAT--SLSQHQ--TLKN 173 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~---~l~~~~~~~~~~~--~i~~~~--t~~e 173 (187)
..-..++..||++|. ++|..|+-|. ++ .++|++.....+. .-....+.+.+.+ .+-..+ |+++
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~Ea---m~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~ 313 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAEL---AA------LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPER 313 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHHH---HH------hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHH
Confidence 344566789999885 5555674444 43 3899998765432 1111234444443 332223 8888
Q ss_pred HHHHHHh
Q 029797 174 LFKNLRS 180 (187)
Q Consensus 174 ~v~~l~~ 180 (187)
+.+.|.+
T Consensus 314 l~~~i~~ 320 (350)
T cd03785 314 LAAALLE 320 (350)
T ss_pred HHHHHHH
Confidence 8887764
No 22
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=94.70 E-value=2.3 Score=36.12 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc--hHHHHHhHHh--CCCcCC-CC-CHHHHHHHH
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP--LMMALSSLLS--ATSLSQ-HQ-TLKNLFKNL 178 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~--l~~~~~~~~~--~~~i~~-~~-t~~e~v~~l 178 (187)
-++..||++|. ++|..|+-|.. ..++|+|..+..+.. .....+.+.+ .|.+.. .+ |++++.+.|
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea~---------~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i 315 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAELA---------AAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEAL 315 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---------HcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHH
Confidence 46788999886 55555765554 248999998765532 1111122222 244332 23 588888877
Q ss_pred Hh
Q 029797 179 RS 180 (187)
Q Consensus 179 ~~ 180 (187)
..
T Consensus 316 ~~ 317 (348)
T TIGR01133 316 LK 317 (348)
T ss_pred HH
Confidence 64
No 23
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.40 E-value=1.5 Score=38.14 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=38.1
Q ss_pred HHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEE-cCCCCchHHHHHhHHhC----------------CCcC
Q 029797 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVA-NKPKSPLMMALSSLLSA----------------TSLS 166 (187)
Q Consensus 104 ~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill-~~~g~~l~~~~~~~~~~----------------~~i~ 166 (187)
..+...||++|. ++|..|+ |+. . .++|+|+. +...|+. ...+++... +++.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVGYKVSPLTF-WIAKRLVKVPYVSLPNLLAGRELVPELLQ 323 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEEEccCHHHH-HHHHHHHcCCeeehHHHhcCCCcchhhcC
Confidence 456788998877 6788887 664 1 28999855 4433321 112222211 1333
Q ss_pred CCCCHHHHHHHHHh
Q 029797 167 QHQTLKNLFKNLRS 180 (187)
Q Consensus 167 ~~~t~~e~v~~l~~ 180 (187)
...|++++.+.+.+
T Consensus 324 ~~~~~~~l~~~i~~ 337 (380)
T PRK00025 324 EEATPEKLARALLP 337 (380)
T ss_pred CCCCHHHHHHHHHH
Confidence 45678888777654
No 24
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.02 E-value=2.2 Score=36.11 Aligned_cols=119 Identities=25% Similarity=0.234 Sum_probs=65.8
Q ss_pred CCCeEEEcCCcccHHHHHHHHHHhcCC-eEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhh
Q 029797 44 RRLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGT 122 (187)
Q Consensus 44 ~g~~lv~GGg~~GlM~a~~~gA~~~gG-~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GT 122 (187)
.++.+||=||. +.- .+.+.+.+..+ .++-+-+... +.....+ .+.... ...-.-++..||++|-- ||.+|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni-~~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI-HVRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE-EEeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 45666666653 554 55555555453 3333333221 1111111 122111 12233346789988876 88999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCCCc-hHHHHHhHHhCCCcCCC----CCHHHHHHHHHh
Q 029797 123 LEELLEVITWAQLGIHDKPVCVANKPKSP-LMMALSSLLSATSLSQH----QTLKNLFKNLRS 180 (187)
Q Consensus 123 L~El~~a~~~~~lg~~~kPvill~~~g~~-l~~~~~~~~~~~~i~~~----~t~~e~v~~l~~ 180 (187)
+.|+.. .++|++++-..+.+ =....+.+-+.|..... -|++.+-+.|++
T Consensus 263 ~~Ea~~---------~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 263 ISEALA---------LGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---------cCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 888862 38999999887752 22334555566655432 377888777764
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=93.50 E-value=1 Score=39.58 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCC---cCC-CCCHHHHHHHHH
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATS---LSQ-HQTLKNLFKNLR 179 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~---i~~-~~t~~e~v~~l~ 179 (187)
.++..||++| -.||.||+.|.. .+++|.+++-..+.. ..+.+.+.+.|. +.. .-|++++.+.|+
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal---------~~G~P~v~~p~~~dq-~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~ 354 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEAL---------FNGVPMVAVPQGADQ-PMTARRIAELGLGRHLPPEEVTAEKLREAVL 354 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHH---------HhCCCEEecCCcccH-HHHHHHHHHCCCEEEeccccCCHHHHHHHHH
Confidence 3467888554 689999988876 248999998655442 123344444442 222 235666665554
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=92.86 E-value=3.2 Score=36.35 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcC---CC-CCHHHHHHHHH
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLS---QH-QTLKNLFKNLR 179 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~---~~-~t~~e~v~~l~ 179 (187)
.++..||++| -.||.||..|.. .+++|.+++-..+. =..+.+.+.+.|.-. .. -|++++.+.|+
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~ 367 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALR 367 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHH
Confidence 4567788887 677799988886 35899999855433 223445555555322 11 26777666654
No 27
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=92.22 E-value=0.17 Score=39.32 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC---chHHHHHhHHhCC
Q 029797 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS---PLMMALSSLLSAT 163 (187)
Q Consensus 104 ~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~---~l~~~~~~~~~~~ 163 (187)
..++..|| +|+--||.||+.|+.. .++|.|++-..+. .-....+.+.+.|
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g 119 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKG 119 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCC
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcC
Confidence 34577799 6667789999888873 4899998855542 2233444555554
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=91.99 E-value=7.5 Score=34.25 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.1
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC----chHHHHHhHHhCCCcCC----CCCHHHHHH
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS----PLMMALSSLLSATSLSQ----HQTLKNLFK 176 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~----~l~~~~~~~~~~~~i~~----~~t~~e~v~ 176 (187)
.++..||++|. -||.+|+.|+. ..++|.|++-.... .-....+.+.+.|.... .-|++++.+
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~---------~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~ 317 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFL---------TLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIK 317 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---------HcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHH
Confidence 46788996555 55667888887 24899999843221 12234455666664422 246777766
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|..
T Consensus 318 ~l~~ 321 (352)
T PRK12446 318 HVEE 321 (352)
T ss_pred HHHH
Confidence 6654
No 29
>PRK10565 putative carbohydrate kinase; Provisional
Probab=91.01 E-value=1.3 Score=41.28 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=54.5
Q ss_pred CCCeEEEcCCc--ccHHHHHHHHHHhcC-CeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCCh
Q 029797 44 RRLDLVYGGGS--IGLMGLVSKAVHHGG-GNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGY 120 (187)
Q Consensus 44 ~g~~lv~GGg~--~GlM~a~~~gA~~~g-G~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~ 120 (187)
+|+.+|-||+. .|.---++++|+..| |.|.-+.|....+ .......+++...-..+.-.-++..+|++++=|| .
T Consensus 254 ~G~vliigGs~~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG-l 330 (508)
T PRK10565 254 HGRLLIIGGDHGTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG-L 330 (508)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-C
Confidence 58999999965 244444667777766 5665555643211 1111122333322111212233467899887776 6
Q ss_pred hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCch
Q 029797 121 GTLEELLEVITWAQLGIHDKPVCVANKPKSPL 152 (187)
Q Consensus 121 GTL~El~~a~~~~~lg~~~kPvill~~~g~~l 152 (187)
|+-++...++.. +...++|+ +++-++-.+
T Consensus 331 g~~~~~~~~~~~--~~~~~~P~-VLDAdaL~l 359 (508)
T PRK10565 331 GQQEWGKKALQK--VENFRKPM-LWDADALNL 359 (508)
T ss_pred CCCHHHHHHHHH--HHhcCCCE-EEEchHHHH
Confidence 665544444322 22457887 557777543
No 30
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=90.39 E-value=12 Score=33.13 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=47.0
Q ss_pred eEeecCCHHHHHHHHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCC
Q 029797 92 EVRPVADMHQRKAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQH 168 (187)
Q Consensus 92 ~~~~~~~m~~R~~~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~ 168 (187)
.+++.+++. .-..+...||++++.| .+.|.- +.|+++. ++|||.-...+ ...+..+.+.+.|.+...
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~-~~~e~~~~~~~~g~~~~~ 372 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTF-NFKEIFERLLQAGAAIQV 372 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCcc-CHHHHHHHHHHCCCeEEE
Confidence 455555543 3446678999977742 122322 5666654 89998743212 122444555566777777
Q ss_pred CCHHHHHHHHHh
Q 029797 169 QTLKNLFKNLRS 180 (187)
Q Consensus 169 ~t~~e~v~~l~~ 180 (187)
+|++++.+.|.+
T Consensus 373 ~d~~~La~~l~~ 384 (425)
T PRK05749 373 EDAEDLAKAVTY 384 (425)
T ss_pred CCHHHHHHHHHH
Confidence 888888777754
No 31
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=89.52 E-value=6 Score=33.66 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
...-.-++..||.+|. .|| .|+.|+.. .++|.+++...
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~~~ 269 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAICLA 269 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEEec
Confidence 3445566888999999 566 89888762 38999988554
No 32
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=88.92 E-value=14 Score=33.02 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=43.9
Q ss_pred CCEEE-EeCCChhhHHHHHHHHHHHHhC-CCCCcEEEEcCCCCchHHHHHhHHhCCC-cCCCCCHHHHHHHHHhhc
Q 029797 110 SDCFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVCVANKPKSPLMMALSSLLSATS-LSQHQTLKNLFKNLRSTC 182 (187)
Q Consensus 110 sDa~I-vlpGG~GTL~El~~a~~~~~lg-~~~kPvill~~~g~~l~~~~~~~~~~~~-i~~~~t~~e~v~~l~~~~ 182 (187)
.|+++ .++|+....+++.+++.-..-. .++||+++ ...|.......+.|.+.|. ++..+||+++++.+...|
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~-~~~g~~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~~ 385 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVV-RLEGTNVELGKKILAESGLNIIAADTLDDAAQKAVEAA 385 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EeCCCCHHHHHHHHHHCCCCceecCCHHHHHHHHHHHh
Confidence 46655 4566766667777776533211 16899954 4555322333344555563 567899999999987643
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=85.38 E-value=23 Score=30.40 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC---chHHHHHhHHhCCC--cCCCC--C
Q 029797 98 DMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS---PLMMALSSLLSATS--LSQHQ--T 170 (187)
Q Consensus 98 ~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~---~l~~~~~~~~~~~~--i~~~~--t 170 (187)
++...-..++..||++|. ++|.+|+-|.. + .++|+|.....+. .-....+.+.+.+. +...+ |
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea~---~------~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~ 310 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVAELA---A------AGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLT 310 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHHHHH---H------hCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCC
Confidence 333334567889999885 56667765554 2 3899998865331 11123445555543 22333 4
Q ss_pred HHHHHHHHHh
Q 029797 171 LKNLFKNLRS 180 (187)
Q Consensus 171 ~~e~v~~l~~ 180 (187)
++++.+.|..
T Consensus 311 ~~~l~~~i~~ 320 (357)
T PRK00726 311 PEKLAEKLLE 320 (357)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 34
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=85.32 E-value=20 Score=32.46 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=60.3
Q ss_pred HHHCCCeEEEcCCccc----HHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEe
Q 029797 41 LVARRLDLVYGGGSIG----LMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIAL 116 (187)
Q Consensus 41 la~~g~~lv~GGg~~G----lM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~Ivl 116 (187)
.+.+....++=|+. + +-+.+.+...+.+.++|--... ... .. .+-...+++....+ ...++..||+|| =
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~-~~~-~~-~~~p~n~~v~~~~p--~~~~l~~ad~vI-~ 306 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGG-ARD-TL-VNVPDNVIVADYVP--QLELLPRADAVI-H 306 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEeccc-ccc-cc-ccCCCceEEecCCC--HHHHhhhcCEEE-e
Confidence 34456666655544 5 4566677777778777665543 111 11 11112333343333 233788899875 5
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhC
Q 029797 117 PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSA 162 (187)
Q Consensus 117 pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~ 162 (187)
.||.||..|.. .+++|++++-.. +.-..+.+..-+.
T Consensus 307 hGG~gtt~eaL---------~~gvP~vv~P~~-~DQ~~nA~rve~~ 342 (406)
T COG1819 307 HGGAGTTSEAL---------YAGVPLVVIPDG-ADQPLNAERVEEL 342 (406)
T ss_pred cCCcchHHHHH---------HcCCCEEEecCC-cchhHHHHHHHHc
Confidence 89999988876 358999998654 4222344444444
No 35
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.95 E-value=29 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC---chHHHHHhHHhCC
Q 029797 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS---PLMMALSSLLSAT 163 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~---~l~~~~~~~~~~~ 163 (187)
|+..||++|+---.+.-..|.. ..+|||.++..+++ ...-|.++|.+++
T Consensus 241 ~La~Adyii~TaDSinM~sEAa---------sTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~ 292 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAA---------STGKPVFILEPPNFNSLKFRIFIEQLVEQK 292 (329)
T ss_pred HHhhcceEEEecchhhhhHHHh---------ccCCCeEEEecCCcchHHHHHHHHHHHHhh
Confidence 5778999999887777666665 34899999999998 3456777777654
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=83.50 E-value=32 Score=30.58 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
.+..||++|.-. |..|+ |+.. .++|+|+.-.
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~yk 294 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVGYR 294 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEEEc
Confidence 568899887655 66787 7762 3899886643
No 37
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=83.17 E-value=31 Score=30.19 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=40.6
Q ss_pred HHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCcCC
Q 029797 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSLSQ 167 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i~~ 167 (187)
++..||++||-+-.+ +.+.||++ .++||.++...+- .+..+.+.|.+.|.+..
T Consensus 225 ~La~ad~i~VT~DSv---SMvsEA~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~ 279 (311)
T PF06258_consen 225 FLAAADAIVVTEDSV---SMVSEAAA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRP 279 (311)
T ss_pred HHHhCCEEEEcCccH---HHHHHHHH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEE
Confidence 578899999988765 45555553 4899999998885 36778889988877654
No 38
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=77.47 E-value=53 Score=29.42 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=35.6
Q ss_pred HHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchH-HHHHhH---HhCCCcCCCCCHHHHHHHHH
Q 029797 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLM-MALSSL---LSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 104 ~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~-~~~~~~---~~~~~i~~~~t~~e~v~~l~ 179 (187)
...+..||++|.-.| .-| .|+. ..++|.|++-..+-++. .+++.. .....+....+++++.+.+.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---------~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~ 359 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---------GLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVR 359 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---------HhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHH
Confidence 456788999998866 344 5543 13899998863333321 122221 11112223466676666554
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
+
T Consensus 360 ~ 360 (396)
T TIGR03492 360 Q 360 (396)
T ss_pred H
Confidence 4
No 39
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=76.77 E-value=6.3 Score=32.33 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHhCCEEEEeCCCh-hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHhh
Q 029797 105 EMARHSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRST 181 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~-GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~ 181 (187)
.+...||++|. |... |.-.=+.|+++ .++|+|.-+..+. .+++++ .|.+...+|++++.+.|.+.
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a------~g~PvI~~~~~~~--~e~~~~---~g~~~~~~~~~~l~~~i~~l 329 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMA------CGLPVVATDVGDN--AELVGD---TGFLVPPGDPEALAEAIEAL 329 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHh------cCCCEEEcCCCCh--HHHhhc---CCEEeCCCCHHHHHHHHHHH
Confidence 46788998765 4332 11112455553 3899998765544 233333 56666667888888877653
No 40
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=76.75 E-value=7.7 Score=30.50 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
.-|+-+.+.++..|+.++++|.. --.+.+++.|.+....+|||+
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 45677888999999999999976 677888888999999999995
No 41
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=76.41 E-value=46 Score=28.91 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=38.5
Q ss_pred HHHHHHH---HHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHH
Q 029797 100 HQRKAEM---ARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNL 174 (187)
Q Consensus 100 ~~R~~~m---~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~ 174 (187)
..|+... ...+|++||++|- +.| .-|+++.. .+++|.+++..-..=-..|++..-.=|.....+||+.+
T Consensus 197 ~~RQ~a~~~La~~vD~miVIGg~~SsNT-~kL~eia~-----~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~i 270 (281)
T PF02401_consen 197 QNRQEAARELAKEVDAMIVIGGKNSSNT-RKLAEIAK-----EHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWI 270 (281)
T ss_dssp HHHHHHHHHHHCCSSEEEEES-TT-HHH-HHHHHHHH-----HCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHH
T ss_pred HHHHHHHHHHHhhCCEEEEecCCCCccH-HHHHHHHH-----HhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHH
Confidence 5666544 4458999999887 344 23333332 24678888865443112344432222333445888877
Q ss_pred HHHHHh
Q 029797 175 FKNLRS 180 (187)
Q Consensus 175 v~~l~~ 180 (187)
++.+-+
T Consensus 271 i~eVi~ 276 (281)
T PF02401_consen 271 IEEVID 276 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 42
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=76.08 E-value=8.3 Score=31.21 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCEEEEeCCC------hhhHHHHHHHHHHHHhCCCCCcEEEEcCCC
Q 029797 100 HQRKAEMARHSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVCVANKPK 149 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG------~GTL~El~~a~~~~~lg~~~kPvill~~~g 149 (187)
.+-...+++.||++|+.--+ +||.-|+-.++++ +||++.+..+.
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~ 108 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDA 108 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecc
Confidence 34455678999999988544 7999999999865 89999887764
No 43
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=75.93 E-value=64 Score=29.54 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=67.3
Q ss_pred CCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccc------cccc-ccCCCCceEeecCC---HHHHHHHHHH--hCC
Q 029797 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL------MNKE-ITGETVGEVRPVAD---MHQRKAEMAR--HSD 111 (187)
Q Consensus 44 ~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~------~~~e-~~~~~~~~~~~~~~---m~~R~~~m~~--~sD 111 (187)
++..+|+.+| |.-..+++.+.+.|..+--..|... +|.. ...|+++ +.-..+ +..=-+.+.+ ..|
T Consensus 296 ~rvaivs~sG--G~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlD-l~~~~~~~~~~~al~~l~~dp~vd 372 (447)
T TIGR02717 296 NRVAIITNAG--GPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVD-VLGDATPERYAKALKTVAEDENVD 372 (447)
T ss_pred CeEEEEECCc--hHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEe-cCCCCCHHHHHHHHHHHHcCCCCC
Confidence 4677788774 6777788988888865322211100 1111 1234443 211111 1111222232 256
Q ss_pred EEEEe--CCChhhHHHHHHHHHHHHhCCC-CCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 112 CFIAL--PGGYGTLEELLEVITWAQLGIH-DKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 112 a~Ivl--pGG~GTL~El~~a~~~~~lg~~-~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
+++++ |++....+++.+++.-. ...+ +||++.....|.......+.|.+.| ++..+||+++++.+..
T Consensus 373 ~Vlv~~~~~~~~~~~~~a~~l~~~-~~~~~~KPvv~~~~gg~~~~~~~~~L~~~G-ip~f~~p~~A~~al~~ 442 (447)
T TIGR02717 373 GVVVVLTPTAMTDPEEVAKGIIEG-AKKSNEKPVVAGFMGGKSVDPAKRILEENG-IPNYTFPERAVKALSA 442 (447)
T ss_pred EEEEEccCCccCCHHHHHHHHHHH-HHhcCCCcEEEEecCCccHHHHHHHHHhCC-CCccCCHHHHHHHHHH
Confidence 76654 44444445666555432 1234 8999554433333333344455545 6788999999998764
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=75.73 E-value=43 Score=27.47 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHhCCEEEEeCC-----ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 102 RKAEMARHSDCFIALPG-----GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 102 R~~~m~~~sDa~IvlpG-----G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
....++..||++|.... |.+.-.-+.|++. .++|+|..+..+.. ..+... ..|.+...+|++++.+
T Consensus 287 ~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~--~~~~~~-~~g~~~~~~~~~~l~~ 357 (394)
T cd03794 287 ELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESA--ELVEEA-GAGLVVPPGDPEALAA 357 (394)
T ss_pred HHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCch--hhhccC-CcceEeCCCCHHHHHH
Confidence 34456788999886533 2333344566664 48999998776653 222221 3466666678888888
Q ss_pred HHHhhc
Q 029797 177 NLRSTC 182 (187)
Q Consensus 177 ~l~~~~ 182 (187)
.|.+.+
T Consensus 358 ~i~~~~ 363 (394)
T cd03794 358 AILELL 363 (394)
T ss_pred HHHHHH
Confidence 887654
No 45
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=75.45 E-value=20 Score=30.19 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchH
Q 029797 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLM 153 (187)
Q Consensus 104 ~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~ 153 (187)
..++..+|++++ .+|.++-+.+.++... +..+++|+ +++.+|..+.
T Consensus 87 ~~~~~~~davvi-g~Gl~~~~~~~~l~~~--~~~~~~pv-VlDa~g~~l~ 132 (272)
T TIGR00196 87 EELLERYDVVVI-GPGLGQDPSFKKAVEE--VLELDKPV-VLDADALNLL 132 (272)
T ss_pred HhhhccCCEEEE-cCCCCCCHHHHHHHHH--HHhcCCCE-EEEhHHHHHH
Confidence 344566777666 6668886554444432 22357886 5577766443
No 46
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=74.54 E-value=8.2 Score=31.15 Aligned_cols=73 Identities=7% Similarity=0.100 Sum_probs=49.5
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHH-------hCCCCCcEEEEcCCCCc---hHHHHHhHHhCCCc---------CCCC
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQ-------LGIHDKPVCVANKPKSP---LMMALSSLLSATSL---------SQHQ 169 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~-------lg~~~kPvill~~~g~~---l~~~~~~~~~~~~i---------~~~~ 169 (187)
.+|++|+.|=..+|+.-+..-++-.- .-..++|+++.-.+-+. ..+.++.|.+.|.. ..-.
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~~~~p~ 154 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPMPAFYTRPK 154 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCCCcccCCCC
Confidence 48999999999999988764322111 11257999988766662 35566677776533 2238
Q ss_pred CHHHHHHHHHhh
Q 029797 170 TLKNLFKNLRST 181 (187)
Q Consensus 170 t~~e~v~~l~~~ 181 (187)
|++|+++.+-.+
T Consensus 155 ~~~~~~~~i~~~ 166 (181)
T TIGR00421 155 SVEDMIDFIVGR 166 (181)
T ss_pred CHHHHHHHHHHH
Confidence 999988877654
No 47
>PRK11914 diacylglycerol kinase; Reviewed
Probab=74.20 E-value=55 Score=27.96 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=34.0
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 113 ~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.|+.-||=||++|+...+. ..+.|+.++-. |-- .+|...+ -.+.++++++++.|.+
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgiiP~-GT~-NdfAr~l-----g~~~~~~~~a~~~i~~ 122 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGIIPA-GTG-NDHAREF-----GIPTGDPEAAADVIVD 122 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEEeC-CCc-chhHHHc-----CCCCCCHHHHHHHHHc
Confidence 5678899999999987662 24678877743 221 1222111 1233577888777764
No 48
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.79 E-value=56 Score=30.05 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHC---------CCeEEEcCC---cccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCH
Q 029797 32 DAAIDLAHELVAR---------RLDLVYGGG---SIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADM 99 (187)
Q Consensus 32 ~~A~~lG~~la~~---------g~~lv~GGg---~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m 99 (187)
+.|+..++.+|++ +..++||+. .+=++.|++..+.+.+..++-+....+.. +. .+.+....+
T Consensus 120 ~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~-----~~~l~~~~~ 193 (445)
T PRK12422 120 DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HL-----VSAIRSGEM 193 (445)
T ss_pred HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HH-----HHHHhcchH
Confidence 3455555555531 345688753 23378888888887787777664332211 10 000001112
Q ss_pred HHHHHHHHHhCCEEEE-----eCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHHhHHhC---CCcCC--C
Q 029797 100 HQRKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALSSLLSA---TSLSQ--H 168 (187)
Q Consensus 100 ~~R~~~m~~~sDa~Iv-----lpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~~~~~~---~~i~~--~ 168 (187)
++-+......|++++ +.|.-.|.+|++..+.... ..++++++....-- .+..+.+.+..+ |.... .
T Consensus 194 -~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~ 270 (445)
T PRK12422 194 -QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHP 270 (445)
T ss_pred -HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCC
Confidence 122222456776654 4555678899998875433 24678777653322 233334445443 22211 2
Q ss_pred CCHHHHHHHHHhhc
Q 029797 169 QTLKNLFKNLRSTC 182 (187)
Q Consensus 169 ~t~~e~v~~l~~~~ 182 (187)
-+.++..+.|++.|
T Consensus 271 pd~e~r~~iL~~k~ 284 (445)
T PRK12422 271 LTKEGLRSFLERKA 284 (445)
T ss_pred CCHHHHHHHHHHHH
Confidence 45667777776654
No 49
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=73.03 E-value=69 Score=28.54 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=42.1
Q ss_pred CCEEEE-eCCChhhHHHHHHHHHHHHhC-CCCCcEEEEcCCCCchHHHHHhHHhCCC-cCCCCCHHHHHHHHHh
Q 029797 110 SDCFIA-LPGGYGTLEELLEVITWAQLG-IHDKPVCVANKPKSPLMMALSSLLSATS-LSQHQTLKNLFKNLRS 180 (187)
Q Consensus 110 sDa~Iv-lpGG~GTL~El~~a~~~~~lg-~~~kPvill~~~g~~l~~~~~~~~~~~~-i~~~~t~~e~v~~l~~ 180 (187)
.|++++ ++||+.-.+++.+.+.-..-. ..+||+++ ...|.......+.|.+.|+ ++..+|++++++.+-+
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv-~~~g~~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~~ 383 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVV-RLEGTNVEEGKKILAESGLNIIFATSMEEAAEKAVE 383 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EeCCccHHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence 466554 567776667777766542211 12489954 4456433333344555563 6778999999988754
No 50
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=72.88 E-value=58 Score=28.86 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=79.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHH---HHHHHHHhcCCeE-EEEeCcc------c-ccc-cc--cCC
Q 029797 23 STGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMG---LVSKAVHHGGGNV-IGIIPRT------L-MNK-EI--TGE 88 (187)
Q Consensus 23 ~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~---a~~~gA~~~gG~v-iGI~p~~------~-~~~-e~--~~~ 88 (187)
..-+|+-. +.-.+.+-..|+.|..+| +|.++|. .+-|.+++..|.. ++|.... + -|. +. ..+
T Consensus 129 ~idND~Tl-~~L~k~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap 204 (314)
T cd00384 129 YVDNDATL-ELLAKIAVSHAEAGADIV---APSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAP 204 (314)
T ss_pred cCccHHHH-HHHHHHHHHHHHcCCCee---ecccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCC
Confidence 44444444 444456667788999999 5777775 5667788877654 6665311 1 011 10 011
Q ss_pred CCc--eEeecC--C--HHHHHHH--HHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHH
Q 029797 89 TVG--EVRPVA--D--MHQRKAE--MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLL 160 (187)
Q Consensus 89 ~~~--~~~~~~--~--m~~R~~~--m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~ 160 (187)
.++ ..++-+ + ...|... +-+-||.+.|=||.. -||=+..+=. ..+.|+..++++|-+ .+++.-.
T Consensus 205 ~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~-YLDIi~~~k~-----~~~~PvaaYqVSGEY--aMikaAa 276 (314)
T cd00384 205 SFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALA-YLDIIRDVRE-----RFDLPVAAYNVSGEY--AMIKAAA 276 (314)
T ss_pred CCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch-HHHHHHHHHH-----hcCCCEEEEEccHHH--HHHHHHH
Confidence 111 111111 0 0112111 234499999999973 2232222211 248999999999997 4555555
Q ss_pred hCCCcCCCCCHHHHHHHHHh
Q 029797 161 SATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 161 ~~~~i~~~~t~~e~v~~l~~ 180 (187)
..|.+......-|.+.-+|.
T Consensus 277 ~~G~id~~~~~~Esl~~~kR 296 (314)
T cd00384 277 KNGWIDEERVVLESLTSIKR 296 (314)
T ss_pred HcCCccHHHHHHHHHHHHHh
Confidence 56666655555555555554
No 51
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=72.62 E-value=59 Score=27.64 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCC-CCHHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQH-QTLKNLFKNLR 179 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~-~t~~e~v~~l~ 179 (187)
..-..+...||++|.=+| |..+|.. ..++|+|+++..+. ...+.+.|..... ++++++.+.+.
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---------~~g~PvI~~~~~~~-----~~~~~~~g~~~~~~~~~~~i~~~i~ 332 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---------FLGVPVLNLRDRTE-----RPETVESGTNVLVGTDPEAILAAIE 332 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---------hcCCCEEeeCCCCc-----cchhhheeeEEecCCCHHHHHHHHH
Confidence 344566778999985555 5544443 23799999875432 1123344543333 36777777765
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
+
T Consensus 333 ~ 333 (363)
T cd03786 333 K 333 (363)
T ss_pred H
Confidence 4
No 52
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=72.48 E-value=10 Score=31.83 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=41.4
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHhh
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRST 181 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~ 181 (187)
.+...||++|.-.---|.-.=+.|+++. ++|||.-+..|.+ +.+++ ..+++...++|+++.+.|.+.
T Consensus 262 ~~~~~adi~v~ps~~E~~~~~~lEAma~------G~PvI~s~~~~~~--~~i~~--~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 262 ELLQAMDVFLFPSLYEGLPLVLIEAQAS------GLPCILSDTITKE--VDLTD--LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred HHHHhcCEEEecccccCCCHHHHHHHHh------CCCEEEEcCCchh--hhhcc--CccEEeCCCCHHHHHHHHHHH
Confidence 4678899887432111222235666643 8999998776653 23333 335666667888888888764
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=72.42 E-value=52 Score=26.91 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKN 177 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~ 177 (187)
+.-.-++..||++|.-. .|.|. =+.|++. .++|+|..+..+.. +++++. ..|.+...+|++++.+.
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~--e~i~~~-~~g~~~~~~d~~~l~~~ 322 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGGMA--ELVRDG-VNGLLFPPGDAEDLAAA 322 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCCHH--HHhcCC-CcEEEECCCCHHHHHHH
Confidence 44455688899887532 33432 2555553 48999987655431 222221 12566666778888888
Q ss_pred HHhh
Q 029797 178 LRST 181 (187)
Q Consensus 178 l~~~ 181 (187)
+++.
T Consensus 323 i~~l 326 (359)
T cd03823 323 LERL 326 (359)
T ss_pred HHHH
Confidence 8764
No 54
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=72.14 E-value=8.1 Score=33.55 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcc
Q 029797 33 AAIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (187)
Q Consensus 33 ~A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~ 79 (187)
.|.++++.++..++ .|+.+||. |...+++.+....+...+||+|.-
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 45667777776655 45677776 999999999999988889999943
No 55
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=72.02 E-value=72 Score=28.35 Aligned_cols=143 Identities=12% Similarity=0.105 Sum_probs=76.2
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHH---HHHHHHHhcCCe-EEEEeCcc------c-ccc-ccc--CCC
Q 029797 24 TGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMG---LVSKAVHHGGGN-VIGIIPRT------L-MNK-EIT--GET 89 (187)
Q Consensus 24 ~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~---a~~~gA~~~gG~-viGI~p~~------~-~~~-e~~--~~~ 89 (187)
.-+|+-+ +.-.+.+-..|+.|..+| +|.++|. ++-|.+++..|. -++|.... + -|. +.. .+.
T Consensus 135 idND~Tl-~~L~~~Avs~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~ 210 (320)
T cd04823 135 ILNDETV-EVLCKQALVQAEAGADIV---APSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPR 210 (320)
T ss_pred CcCHHHH-HHHHHHHHHHHHhCCCEE---EcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCC
Confidence 3344444 445556777889999999 5778886 455667776664 46665321 1 111 110 111
Q ss_pred Cce--EeecCCHHHHHHH-------HHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHH
Q 029797 90 VGE--VRPVADMHQRKAE-------MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLL 160 (187)
Q Consensus 90 ~~~--~~~~~~m~~R~~~-------m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~ 160 (187)
+++ .++- +...|+.. .-+-||.+.|=||.. -||=+.++=. ..+.|+..++++|-+ .+++.-.
T Consensus 211 fgDRksYQm-dp~n~~eAlre~~~Di~EGAD~lMVKPal~-YLDIi~~~k~-----~~~lPvaaYqVSGEY--aMikaAa 281 (320)
T cd04823 211 KGDKKTYQM-DPANSREALREVALDIAEGADMVMVKPGMP-YLDIIRRVKD-----EFGVPTFAYQVSGEY--AMLKAAA 281 (320)
T ss_pred CCCccccCC-CCCCHHHHHHHHHhhHHhCCCEEEEcCCch-HHHHHHHHHH-----hcCCCEEEEEccHHH--HHHHHHH
Confidence 111 1111 11122222 234499999999973 2332322211 348999999999986 4444444
Q ss_pred hCCCcCCCCCHHHHHHHHH
Q 029797 161 SATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 161 ~~~~i~~~~t~~e~v~~l~ 179 (187)
..|.+...+..-|.+.-+|
T Consensus 282 ~~G~~d~~~~~~Esl~~ik 300 (320)
T cd04823 282 QNGWLDEDKVMLESLLAFK 300 (320)
T ss_pred HcCCCcHHHHHHHHHHHHH
Confidence 5555544444444444444
No 56
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=70.25 E-value=8.3 Score=32.25 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=39.3
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHhh
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRST 181 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~ 181 (187)
.++..||++|.-...-|.-.-+.|+++ .++|+|..+..+.. +.+++ .|.....+|++++.+.|.+.
T Consensus 258 ~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~~~--e~i~~---~g~~~~~~~~~~~~~~i~~l 323 (360)
T cd04951 258 AYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGGVR--EVVGD---SGLIVPISDPEALANKIDEI 323 (360)
T ss_pred HHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCChh--hEecC---CceEeCCCCHHHHHHHHHHH
Confidence 457889987765432121223566664 38999987665432 22222 46655668888887777653
No 57
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=70.01 E-value=33 Score=31.45 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCc---ccHHHHHHHHHHhcCC--eEEEEeCcccccccccCCCCceEeecCCH-H
Q 029797 32 DAAIDLAHELVA-----RRLDLVYGGGS---IGLMGLVSKAVHHGGG--NVIGIIPRTLMNKEITGETVGEVRPVADM-H 100 (187)
Q Consensus 32 ~~A~~lG~~la~-----~g~~lv~GGg~---~GlM~a~~~gA~~~gG--~viGI~p~~~~~~e~~~~~~~~~~~~~~m-~ 100 (187)
+.|+.++..+|+ .+...++|+-. +=||.|+...+.+.+- +++.+....+.- .+.....-..| .
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~------~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN------DFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH------HHHHHHHhhhHHH
Confidence 567777788877 46677888732 3389999999999875 555554322210 00001111234 2
Q ss_pred HHHHHHHHhCCEEEE-----eCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc
Q 029797 101 QRKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP 151 (187)
Q Consensus 101 ~R~~~m~~~sDa~Iv-----lpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~ 151 (187)
-|+.. +.|.+++ +.|.-.|-+|+|..+. .+...+|-|++. .+-+|
T Consensus 170 Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvlt-sdr~P 219 (408)
T COG0593 170 FKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLT-SDRPP 219 (408)
T ss_pred HHHhh---ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEE-cCCCc
Confidence 33333 7887775 6788899999998875 444556655544 44453
No 58
>PRK13057 putative lipid kinase; Reviewed
Probab=69.98 E-value=17 Score=30.94 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=35.7
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
..| .|+.-||=||++|+...+. ..+.|+.++-. |- -.+|...+ ....+++++++.|.+
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP~-GT-~Ndfar~L------g~~~~~~~a~~~i~~ 107 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILPL-GT-ANDLARTL------GIPLDLEAAARVIAT 107 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEECC-CC-ccHHHHHc------CCCCCHHHHHHHHHc
Confidence 345 4667899999999997763 24678877743 22 11222222 223568888887765
No 59
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=69.55 E-value=12 Score=30.45 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.+...||++|.-...-|.-.=+.|+++ .++|+|.-+..+.. +++++ -..|.+...+|++++.+.|..
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~~--~~i~~-~~~g~~~~~~~~~~~~~~i~~ 325 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGCR--EAVID-GVNGFLVPPGDAEALADAIER 325 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCch--hhhhc-CcceEEECCCCHHHHHHHHHH
Confidence 457789987654322222233666663 48999987665542 22222 123566666788888888765
No 60
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=69.40 E-value=8.9 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=26.6
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 029797 11 SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (187)
Q Consensus 11 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 51 (187)
++.++|||+|-|..+.. .++.+.+.|-++||.|+==
T Consensus 14 ~~~K~IAvVG~S~~P~r-----~sy~V~kyL~~~GY~ViPV 49 (140)
T COG1832 14 KSAKTIAVVGASDKPDR-----PSYRVAKYLQQKGYRVIPV 49 (140)
T ss_pred HhCceEEEEecCCCCCc-----cHHHHHHHHHHCCCEEEee
Confidence 44579999987775543 3566888899999999643
No 61
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=69.04 E-value=73 Score=27.22 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHHhHHhCCCc
Q 029797 102 RKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALSSLLSATSL 165 (187)
Q Consensus 102 R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~~~~~~~~i 165 (187)
.-.-++..||++|-= ||.+|+.|.. .+++|++++...+. .=....+.+.+.|..
T Consensus 240 ~~~~~l~~ad~vI~~-~G~~t~~Ea~---------~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~ 294 (321)
T TIGR00661 240 NFKELIKNAELVITH-GGFSLISEAL---------SLGKPLIVIPDLGQFEQGNNAVKLEDLGCG 294 (321)
T ss_pred HHHHHHHhCCEEEEC-CChHHHHHHH---------HcCCCEEEEcCCCcccHHHHHHHHHHCCCE
Confidence 445567789988765 6778977765 24899999887654 333455566666644
No 62
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=68.39 E-value=85 Score=29.26 Aligned_cols=150 Identities=12% Similarity=0.003 Sum_probs=73.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeEEEcCCc-------ccHHHHHHHHHHhcCCeEEEEeCcccccc
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVAR--RLDLVYGGGS-------IGLMGLVSKAVHHGGGNVIGIIPRTLMNK 83 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~--g~~lv~GGg~-------~GlM~a~~~gA~~~gG~viGI~p~~~~~~ 83 (187)
.+++-..|+-.....+ ......++-+.|.+. |..+++=|.. .-...+..+.....+-+++=-......+.
T Consensus 264 ~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~ 342 (507)
T PHA03392 264 PPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAI 342 (507)
T ss_pred CCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcc
Confidence 4566666764331100 001123455556544 5666666642 12345555655555544432221111110
Q ss_pred cccCCCCceEeecCCHHHHHHHHH-HhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhC
Q 029797 84 EITGETVGEVRPVADMHQRKAEMA-RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSA 162 (187)
Q Consensus 84 e~~~~~~~~~~~~~~m~~R~~~m~-~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~ 162 (187)
+....+.+.+-++. ..+|. ..+++ ++=.||.||..|.. .+++|++++-.-+. =..+.+.+.+.
T Consensus 343 ----~~p~Nv~i~~w~Pq-~~lL~hp~v~~-fItHGG~~s~~Eal---------~~GvP~v~iP~~~D-Q~~Na~rv~~~ 406 (507)
T PHA03392 343 ----NLPANVLTQKWFPQ-RAVLKHKNVKA-FVTQGGVQSTDEAI---------DALVPMVGLPMMGD-QFYNTNKYVEL 406 (507)
T ss_pred ----cCCCceEEecCCCH-HHHhcCCCCCE-EEecCCcccHHHHH---------HcCCCEEECCCCcc-HHHHHHHHHHc
Confidence 11124555555553 33433 22444 45678899988876 36999998865443 22344555555
Q ss_pred CCc---CC-CCCHHHHHHHHH
Q 029797 163 TSL---SQ-HQTLKNLFKNLR 179 (187)
Q Consensus 163 ~~i---~~-~~t~~e~v~~l~ 179 (187)
|.- .. .-|++++.+.|+
T Consensus 407 G~G~~l~~~~~t~~~l~~ai~ 427 (507)
T PHA03392 407 GIGRALDTVTVSAAQLVLAIV 427 (507)
T ss_pred CcEEEeccCCcCHHHHHHHHH
Confidence 522 22 236666666554
No 63
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=67.63 E-value=13 Score=28.10 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCEEEEeCC--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHH
Q 029797 100 HQRKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKN 177 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpG--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~ 177 (187)
.+....+...||++|...- |+|+ =+.+++. .++|+|+-+..+.. +.+.... .|.+....|++++.+.
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~~~~--e~~~~~~-~g~~~~~~~~~~l~~~ 151 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIGGNN--EIINDGV-NGFLFDPNDIEELADA 151 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESSTHHH--HHSGTTT-SEEEESTTSHHHHHHH
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeeccccCCc--eeecccc-ceEEeCCCCHHHHHHH
Confidence 4556777888999998743 2222 3555553 38999987743321 2222221 2456666799999988
Q ss_pred HHhh
Q 029797 178 LRST 181 (187)
Q Consensus 178 l~~~ 181 (187)
|.+.
T Consensus 152 i~~~ 155 (172)
T PF00534_consen 152 IEKL 155 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 64
>PRK10307 putative glycosyl transferase; Provisional
Probab=67.49 E-value=31 Score=30.28 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCEEEEeC--CChh--hHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHH
Q 029797 100 HQRKAEMARHSDCFIALP--GGYG--TLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLF 175 (187)
Q Consensus 100 ~~R~~~m~~~sDa~Ivlp--GG~G--TL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v 175 (187)
.+.-..+...||++|+.. ++.| ..+-++++++ .++|||.-+..|..+.+..+ ..|++...+|++++.
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama------~G~PVi~s~~~g~~~~~~i~---~~G~~~~~~d~~~la 364 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLA------SGRNVVATAEPGTELGQLVE---GIGVCVEPESVEALV 364 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHH------cCCCEEEEeCCCchHHHHHh---CCcEEeCCCCHHHHH
Confidence 345556788999987631 2211 1233455543 38999988766654444444 467776678888888
Q ss_pred HHHHhh
Q 029797 176 KNLRST 181 (187)
Q Consensus 176 ~~l~~~ 181 (187)
+.|.+.
T Consensus 365 ~~i~~l 370 (412)
T PRK10307 365 AAIAAL 370 (412)
T ss_pred HHHHHH
Confidence 877653
No 65
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=67.24 E-value=15 Score=29.80 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=50.6
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHH-------hCCCCCcEEEEcCCCC--c-hHHHHHhHHhCCCc---------CCCC
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQ-------LGIHDKPVCVANKPKS--P-LMMALSSLLSATSL---------SQHQ 169 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~-------lg~~~kPvill~~~g~--~-l~~~~~~~~~~~~i---------~~~~ 169 (187)
.+|++|+.|=-.+|+.-+..-++-.- .-..++|+++.-.+-| + ..+.++.|.+.|.. ..-.
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p~ 157 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRPQ 157 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCcccccCCC
Confidence 48999999999999988764322111 1125899999887666 2 46677777777643 3349
Q ss_pred CHHHHHHHHHhh
Q 029797 170 TLKNLFKNLRST 181 (187)
Q Consensus 170 t~~e~v~~l~~~ 181 (187)
|++|+++.+--.
T Consensus 158 ~~~~~~~~~v~~ 169 (185)
T PRK06029 158 TLEDMVDQTVGR 169 (185)
T ss_pred CHHHHHHHHHHH
Confidence 999999887543
No 66
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=66.91 E-value=24 Score=29.16 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP 151 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~ 151 (187)
......|++++ .+|.|+-+.+..+... +..+++|+| ++.++.+
T Consensus 73 ~~~~~~d~v~i-g~gl~~~~~~~~i~~~--~~~~~~pvV-lDa~~~~ 115 (254)
T cd01171 73 ELLERADAVVI-GPGLGRDEEAAEILEK--ALAKDKPLV-LDADALN 115 (254)
T ss_pred hhhccCCEEEE-ecCCCCCHHHHHHHHH--HHhcCCCEE-EEcHHHH
Confidence 33556787665 5557775444444332 223578864 5777664
No 67
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=66.44 E-value=23 Score=28.67 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=39.5
Q ss_pred HHHHHHHhCCEEEEeCC--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 102 RKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 102 R~~~m~~~sDa~IvlpG--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
....+...||++|.-.. |.|+ =+.|+++ .++|+|..+..+.. ..+.++. ..|.+....+++++.+.|+
T Consensus 245 ~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~i~ 314 (348)
T cd03820 245 NIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGP-SEIIEDG-VNGLLVPNGDVEALAEALL 314 (348)
T ss_pred hHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCch-HhhhccC-cceEEeCCCCHHHHHHHHH
Confidence 34456777998775432 2232 2566664 48999987654432 1112211 2355555677788877776
Q ss_pred hh
Q 029797 180 ST 181 (187)
Q Consensus 180 ~~ 181 (187)
+.
T Consensus 315 ~l 316 (348)
T cd03820 315 RL 316 (348)
T ss_pred HH
Confidence 53
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=66.35 E-value=16 Score=30.61 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=41.9
Q ss_pred HHHHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 103 KAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
-...+..||++|.-. -|+|+ =++|+++ .++|+|..+..+.. +.+++-. .|++...+|++++.+.|.
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~~~--e~i~~~~-~g~~~~~~~~~~l~~~i~ 325 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGGAR--ETVRPGE-TGLLVPPGDAEALAQALD 325 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCCcH--HHHhCCC-ceEEeCCCCHHHHHHHHH
Confidence 345577799987643 34442 3566664 38999998765542 3333221 366666789999888875
No 69
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=66.22 E-value=27 Score=29.07 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCEEEEeC----CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 101 QRKAEMARHSDCFIALP----GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp----GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
.....+...||++|... .|.|.- +.|+++ .++|||.-+..+.. +.+..--..|++...+|++++.+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~------~g~Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~ 324 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIV--LLEAMA------FGKPVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAE 324 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchH--HHHHHH------cCCCEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHH
Confidence 44566788899987642 344532 555654 48999987665553 22222112356666678888888
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|.+
T Consensus 325 ~i~~ 328 (357)
T cd03795 325 AIRR 328 (357)
T ss_pred HHHH
Confidence 7765
No 70
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=65.68 E-value=20 Score=29.91 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNL 178 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l 178 (187)
+....+...||++|.-. .|.|. =+.|+++ .++|+|..+..+.. +.+.+. ..|++....|++++.+.+
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~~--e~~~~~-~~g~~~~~~~~~~~~~~l 324 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGIP--DIVDHG-VTGYLAKPGDPEDLAEGI 324 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCCh--hheeCC-CceEEeCCCCHHHHHHHH
Confidence 34456788899987643 22222 2555553 48999998876653 222211 234554556677776666
Q ss_pred Hh
Q 029797 179 RS 180 (187)
Q Consensus 179 ~~ 180 (187)
.+
T Consensus 325 ~~ 326 (365)
T cd03825 325 EW 326 (365)
T ss_pred HH
Confidence 54
No 71
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=65.29 E-value=8.9 Score=28.61 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=22.0
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 113 ~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
.|+.-||=||++|+...+--........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 6778999999999988773211000116777763
No 72
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=65.05 E-value=15 Score=29.70 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHHHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 103 KAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
-..++..||++|... |...+ +.|+++ .++|+|..+..+.. +++++ -..+.+...++++++.+.|.
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~---~~Ea~~------~g~pvI~~~~~~~~--~~~~~-~~~g~~~~~~~~~~l~~~i~ 336 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLV---LLEAMA------AGLPVVASDVGGIP--EVVED-GETGLLVPPGDPEALAEAIL 336 (374)
T ss_pred HHHHHHhcCEEEecchhccccch---HHHHHH------cCCcEEEeCCCChh--HHhcC-CcceEEeCCCCHHHHHHHHH
Confidence 445567799877643 22334 455553 48999988775542 22222 12345555566788877776
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
+
T Consensus 337 ~ 337 (374)
T cd03801 337 R 337 (374)
T ss_pred H
Confidence 5
No 73
>PRK13054 lipid kinase; Reviewed
Probab=64.55 E-value=55 Score=27.95 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=36.0
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
..| .|+..||=||++|+...+.-.. ..++.|+.++- .|- -.+|...+ ....+|+++++.|.+
T Consensus 56 ~~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgiiP-~GT-gNdfar~l------gi~~~~~~a~~~i~~ 117 (300)
T PRK13054 56 GVA-TVIAGGGDGTINEVATALAQLE-GDARPALGILP-LGT-ANDFATAA------GIPLEPDKALKLAIE 117 (300)
T ss_pred CCC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEEe-CCc-HhHHHHhc------CCCCCHHHHHHHHHh
Confidence 345 5668899999999998773211 12346777763 222 11233322 233568888887654
No 74
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=64.22 E-value=37 Score=25.54 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=9.9
Q ss_pred CEEEEeCCChh
Q 029797 111 DCFIALPGGYG 121 (187)
Q Consensus 111 Da~IvlpGG~G 121 (187)
|++|||+||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 78999999977
No 75
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=63.77 E-value=61 Score=27.58 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=34.8
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhC-CCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg-~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.| +|+.-||=||++|+...+. +.+ ..+.|+.++-. |- -.+|...+ ....+++++++.|.+
T Consensus 53 ~d-~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP~-GT-gNdfAr~l------~ip~~~~~a~~~i~~ 113 (293)
T TIGR03702 53 VS-TVIAGGGDGTLREVATALA--QIRDDAAPALGLLPL-GT-ANDFATAA------GIPLEPAKALKLALN 113 (293)
T ss_pred CC-EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEcC-Cc-hhHHHHhc------CCCCCHHHHHHHHHh
Confidence 34 5668899999999998773 111 12457777643 22 11222222 223567777777653
No 76
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=63.62 E-value=9.1 Score=29.76 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcC----CCCCHHH
Q 029797 100 HQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLS----QHQTLKN 173 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~----~~~t~~e 173 (187)
......++..||++++-+=- -||++++.... .+.+++++++++.- ..++-|.+.|.-. ...++|.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~---~~P~~l~~~Gv~~v~g~~v~d~~~ 123 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAP---LHPEALFDYGVTYVGGSRVVDPEK 123 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGG---S-GGGGCCTT-SEEEEEEES-HHH
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCch---hhHHHHHhCCCCEEEEEEEeCHHH
Confidence 45577889999998876544 49999998654 24789999987653 2234555555322 2489999
Q ss_pred HHHHHHh
Q 029797 174 LFKNLRS 180 (187)
Q Consensus 174 ~v~~l~~ 180 (187)
+++.++.
T Consensus 124 ~~~~i~~ 130 (147)
T PF04016_consen 124 VLRAISE 130 (147)
T ss_dssp HHHHHCT
T ss_pred HHHHHHc
Confidence 9998875
No 77
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=63.49 E-value=74 Score=27.64 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=54.6
Q ss_pred HCCCeEEEcCC--cccHHHHHHHHHHhcC-CeEEEEeCcccccccccCCCCceEeec--CCH-HHHHHHHHHhCCEEEEe
Q 029797 43 ARRLDLVYGGG--SIGLMGLVSKAVHHGG-GNVIGIIPRTLMNKEITGETVGEVRPV--ADM-HQRKAEMARHSDCFIAL 116 (187)
Q Consensus 43 ~~g~~lv~GGg--~~GlM~a~~~gA~~~g-G~viGI~p~~~~~~e~~~~~~~~~~~~--~~m-~~R~~~m~~~sDa~Ivl 116 (187)
++|+.+|-||+ +.|-...++.+|+..| |.|.-.+|.... ... .....+++.. .+. ...+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~-~~~-~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAA-SAL-KSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhh-hhH-hhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 36888888876 3577777888888876 444444454211 011 1111233322 222 22233667788887654
Q ss_pred CCChhhHHHHHHHHHHHHhCCCC-CcEEEEcCCCC
Q 029797 117 PGGYGTLEELLEVITWAQLGIHD-KPVCVANKPKS 150 (187)
Q Consensus 117 pGG~GTL~El~~a~~~~~lg~~~-kPvill~~~g~ 150 (187)
-|.|.-+|..++..... ... +|+|+ +-|+.
T Consensus 109 -pGlG~~~~~~~~~~~~l--~~~~~p~Vi-DADaL 139 (284)
T COG0063 109 -PGLGRDAEGQEALKELL--SSDLKPLVL-DADAL 139 (284)
T ss_pred -CCCCCCHHHHHHHHHHH--hccCCCEEE-eCcHH
Confidence 46777666655553322 223 88866 44554
No 78
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=63.39 E-value=92 Score=27.32 Aligned_cols=83 Identities=24% Similarity=0.252 Sum_probs=42.9
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCC-eEEEEeCcccccccccCC-CCceEeecC---CHHHHHHHHHH--hCCEEEEeC
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITGE-TVGEVRPVA---DMHQRKAEMAR--HSDCFIALP 117 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG-~viGI~p~~~~~~e~~~~-~~~~~~~~~---~m~~R~~~m~~--~sDa~Ivlp 117 (187)
+..+|.|.|+-|+|. ...|...|. ++|.+-+ .....+.+.+ .-.+.+... .-..+...+.. -+|.+|-.-
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~d~-~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVVDR-SPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEeCC-CHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 468899999999997 344555564 4444411 1111222322 112222221 12222222222 378888888
Q ss_pred CChhhHHHHHHHH
Q 029797 118 GGYGTLEELLEVI 130 (187)
Q Consensus 118 GG~GTL~El~~a~ 130 (187)
|-.-|+++...+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 8666666666554
No 79
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=61.97 E-value=11 Score=28.60 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCEEEEeC--CC---hhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 101 QRKAEMARHSDCFIALP--GG---YGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp--GG---~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
+=.+.++..||++||+. |- .|+.-|+..+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 34567889999999995 44 799999998875 48998875
No 80
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=61.89 E-value=57 Score=26.88 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHHhCCEEEEeC--CCh-hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 103 KAEMARHSDCFIALP--GGY-GTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp--GG~-GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
...+...||+++.-. .|. .+ ++|+++ .++|||..+..+.. +.. -+.+.....+|++++.+.|.
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~~---~~Ea~a------~G~pvI~~~~~~~~--e~~---~~~~~~~~~~~~~~~~~~i~ 331 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGLP---VLEAMA------CGTPVIASNISSLP--EVA---GDAALYFDPLDPEALAAAIE 331 (365)
T ss_pred HHHHHhhhhhhcccchhccCCCC---HHHHhc------CCCcEEecCCCCcc--cee---cCceeeeCCCCHHHHHHHHH
Confidence 345567788665331 122 23 555653 48999987765542 111 13455556678898888887
Q ss_pred hh
Q 029797 180 ST 181 (187)
Q Consensus 180 ~~ 181 (187)
+.
T Consensus 332 ~l 333 (365)
T cd03809 332 RL 333 (365)
T ss_pred HH
Confidence 64
No 81
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=61.86 E-value=11 Score=30.87 Aligned_cols=162 Identities=11% Similarity=0.071 Sum_probs=80.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCc----ccHHHH-----HHHHHHhcCCeEEEEeCcccc
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL-VYGGGS----IGLMGL-----VSKAVHHGGGNVIGIIPRTLM 81 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-v~GGg~----~GlM~a-----~~~gA~~~gG~viGI~p~~~~ 81 (187)
++++|++||||=++...-+...|+++.+.+...-... .++.-+ .++--+ ..+-|.+.... .-|.. ...
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~-~~v~~-~e~ 78 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIEDNPR-FEVSD-REI 78 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhcCCC-cceeH-HHH
Confidence 3679999999998888888889999888886554333 345432 112222 22233333222 11100 000
Q ss_pred ccc-----------c--cCCCCceEe--ecC----CH--HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCC
Q 029797 82 NKE-----------I--TGETVGEVR--PVA----DM--HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDK 140 (187)
Q Consensus 82 ~~e-----------~--~~~~~~~~~--~~~----~m--~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~k 140 (187)
.+. . ..++-++++ +-. ++ ..|-+.++..+..+|+-=.|.| ++...+ +. +..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~---~~~~~~---~~--~~~ 150 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYG---ELELSL---LS--SGG 150 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCch---hhhhhh---hc--CCc
Confidence 000 0 011111222 112 22 3666677777777777666666 332211 11 122
Q ss_pred cEEEEcCCCCch-HHHHHhHHhCCCcCCCCCHHHHHHHHHhhcc
Q 029797 141 PVCVANKPKSPL-MMALSSLLSATSLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 141 Pvill~~~g~~l-~~~~~~~~~~~~i~~~~t~~e~v~~l~~~~~ 183 (187)
.+++++..-... .......+..+.-...--|++++++|+..-|
T Consensus 151 ~~~~~~~~~~~ISSt~IR~~~~~~~~~~~llP~~V~~YI~~~~L 194 (197)
T COG1057 151 AIILLDLPRLDISSTEIRERIRRGASVDYLLPDSVLSYIEERGL 194 (197)
T ss_pred eEEEccCccccCchHHHHHHHhCCCCchhcCCHHHHHHHHHhcc
Confidence 333333322221 2334445555555556889999999988765
No 82
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=61.84 E-value=1.2e+02 Score=29.31 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHC-CCeEEEcCC---cccHHHHHHHHHHhc--CCeEEEEeCcccccccccCCCCceEeecCCHHHHHHH
Q 029797 32 DAAIDLAHELVAR-RLDLVYGGG---SIGLMGLVSKAVHHG--GGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAE 105 (187)
Q Consensus 32 ~~A~~lG~~la~~-g~~lv~GGg---~~GlM~a~~~gA~~~--gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~ 105 (187)
..|.++.+...+. +..++||.. ++=|+.|++..+.+. |..|+-+....+. .+... -+....+..-+.
T Consensus 301 aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~-----al~~~~~~~f~~- 373 (617)
T PRK14086 301 AAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFIN-----SIRDGKGDSFRR- 373 (617)
T ss_pred HHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHH-----HHHhccHHHHHH-
Confidence 3444444332221 335677763 333899999888763 5555555332221 11110 000112211111
Q ss_pred HHHhCCEEEE-----eCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHHhHHhC---CCcCC--CCCHHHH
Q 029797 106 MARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALSSLLSA---TSLSQ--HQTLKNL 174 (187)
Q Consensus 106 m~~~sDa~Iv-----lpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~~~~~~---~~i~~--~~t~~e~ 174 (187)
.+...|.+|+ +.|--.|-+|+|.++...+ ..+|+||+.....- .+..+.+.|..+ |++.. .-+.+..
T Consensus 374 ~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 374 RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 1455787654 4565677889998876533 45788887554332 222233444432 33221 2344555
Q ss_pred HHHHHhh
Q 029797 175 FKNLRST 181 (187)
Q Consensus 175 v~~l~~~ 181 (187)
.+.|++.
T Consensus 452 ~aIL~kk 458 (617)
T PRK14086 452 IAILRKK 458 (617)
T ss_pred HHHHHHH
Confidence 5555544
No 83
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=61.82 E-value=70 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=28.6
Q ss_pred HHHHHHHHHH-----hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 99 MHQRKAEMAR-----HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 99 m~~R~~~m~~-----~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
=.+|-+-+.+ ..|+++..-||.|+.. +..-+.+..+..++|+ ++
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r-lL~~ld~~~~~~~pK~--~i 95 (282)
T cd07025 47 DEERAADLNAAFADPEIKAIWCARGGYGANR-LLPYLDYDLIRANPKI--FV 95 (282)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH-hhhhCCHHHHhhCCeE--EE
Confidence 3455544443 4789999999999854 5555677666544444 55
No 84
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=61.48 E-value=37 Score=30.13 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=41.7
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
-++-.||.+| ||.||++ .||.-+ +.|.|=+.. |. +...-+.+++.|++....|++|+++.+++
T Consensus 244 ~Ll~~a~l~I---g~ggTMa--~EAA~L------GtPaIs~~~-g~-~~~vd~~L~~~Gll~~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 244 DLLYYADLVI---GGGGTMA--REAALL------GTPAISCFP-GK-LLAVDKYLIEKGLLYHSTDPDEIVEYVRK 306 (335)
T ss_pred HHHHhcCEEE---eCCcHHH--HHHHHh------CCCEEEecC-Cc-chhHHHHHHHCCCeEecCCHHHHHHHHHH
Confidence 3566788776 5556654 333322 799885432 22 22333558888999999999999998865
No 85
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=60.89 E-value=23 Score=28.45 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=36.6
Q ss_pred HhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-c--hHHHHHhHHhCCCcCCC--CCHHHHHHH
Q 029797 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-P--LMMALSSLLSATSLSQH--QTLKNLFKN 177 (187)
Q Consensus 108 ~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~--l~~~~~~~~~~~~i~~~--~t~~e~v~~ 177 (187)
+.||.+ +=.+|.||--|. +. .+||.|++-++.- . =.++.++|.+.|++... .|.++-+..
T Consensus 79 ~~AdlV-IsHAGaGS~let---L~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L~~~L~~ 143 (170)
T KOG3349|consen 79 RSADLV-ISHAGAGSCLET---LR------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTLPAGLAK 143 (170)
T ss_pred hhccEE-EecCCcchHHHH---HH------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccchHHHHHh
Confidence 345544 447899995444 43 3899987755543 1 24566788888887653 445444443
No 86
>PRK00861 putative lipid kinase; Reviewed
Probab=60.42 E-value=21 Score=30.46 Aligned_cols=43 Identities=35% Similarity=0.499 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcCCeEEEEeCc
Q 029797 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (187)
Q Consensus 34 A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~ 78 (187)
|.++.+..++.++ .||..||. |-...+..+.... +..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcC
Confidence 3455555555553 45566666 9999999998765 467999994
No 87
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.22 E-value=46 Score=28.85 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=41.8
Q ss_pred cccccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC----------------------------CeEEEcCCcc
Q 029797 4 EGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARR----------------------------LDLVYGGGSI 55 (187)
Q Consensus 4 ~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g----------------------------~~lv~GGg~~ 55 (187)
..|+. ++.+++|+|+.- .. +...+.+.++.++|.++| ..++.|| .
T Consensus 2 ~~~~~-~~~~~~i~ii~~--~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG-D- 74 (287)
T PRK14077 2 QNKID-HKNIKKIGLVTR--PN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGG-D- 74 (287)
T ss_pred ccccc-cccCCEEEEEeC--Cc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECC-C-
Confidence 34443 334678999943 22 255677888888776544 3334454 5
Q ss_pred cHHHHHHHHHHhcCCeEEEEeC
Q 029797 56 GLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 56 GlM~a~~~gA~~~gG~viGI~p 77 (187)
|.|=-+++-+...+-.++||-.
T Consensus 75 GT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 75 GTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred HHHHHHHHHhcCCCCcEEEEeC
Confidence 7776666666666778888853
No 88
>PRK00861 putative lipid kinase; Reviewed
Probab=59.76 E-value=69 Score=27.27 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=34.4
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.|. |+.-||=||++|+...+. .++.|+.++-. |- -.+|...+ ....+++++++.|.+
T Consensus 58 ~d~-vv~~GGDGTl~evv~~l~-----~~~~~lgviP~-GT-gNdfAr~l------gi~~~~~~a~~~i~~ 114 (300)
T PRK00861 58 AEL-IIASGGDGTLSAVAGALI-----GTDIPLGIIPR-GT-ANAFAAAL------GIPDTIEEACRTILQ 114 (300)
T ss_pred CCE-EEEECChHHHHHHHHHHh-----cCCCcEEEEcC-Cc-hhHHHHHc------CCCCCHHHHHHHHHc
Confidence 454 556899999999997763 23577777633 32 11222222 223467777777654
No 89
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=59.70 E-value=15 Score=31.09 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 029797 9 KNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVA 43 (187)
Q Consensus 9 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~ 43 (187)
++++.++|+|||||=++...-+...|+++-+.+.-
T Consensus 17 ~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 17 PLARPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 44556689999999887777788888888887754
No 90
>PRK13337 putative lipid kinase; Reviewed
Probab=59.65 E-value=25 Score=30.12 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcC-CeEEEEeCc
Q 029797 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIPR 78 (187)
Q Consensus 34 A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~g-G~viGI~p~ 78 (187)
|.++.+.++++++ .||..||. |...++..+....+ ...+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECC
Confidence 3444454555543 44555556 99999999887654 357999994
No 91
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=59.32 E-value=19 Score=26.73 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=22.8
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCC---eEEEEeCcc
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGG---NVIGIIPRT 79 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG---~viGI~p~~ 79 (187)
.||..||. |....+..+....+. ..+||+|.-
T Consensus 57 ~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 57 VIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp EEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred EEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 55555566 888888888888765 479998843
No 92
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=58.76 E-value=30 Score=29.33 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCEEEEeC-CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp-GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
+....++..||++|.-. -|.|.. +.|+++ .++|||..+..|.. +.+.+- ..|++...++++++.+.|.
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~~~--e~i~~~-~~G~~~~~~~~~~la~~i~ 321 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGGAL--ETVIDG-VTGILFEEQTVESLAAAVE 321 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCCCc--ceeeCC-CCEEEeCCCCHHHHHHHHH
Confidence 44566788899988543 455654 456664 48999998776552 111111 2356555678888777775
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
.
T Consensus 322 ~ 322 (351)
T cd03804 322 R 322 (351)
T ss_pred H
Confidence 4
No 93
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.49 E-value=15 Score=31.95 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=53.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCc
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~ 91 (187)
++++|.++--. + .+...+.+.++.++|.++|+.+..---. . ...+ ...
T Consensus 2 ~~kkv~lI~n~--~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~~--------~~~----------- 49 (305)
T PRK02645 2 QLKQVIIAYKA--G-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDNP--------YPV----------- 49 (305)
T ss_pred CcCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhcc--------ccc-----------
Confidence 45678888432 3 3455567888888898888886543211 0 0000 000
Q ss_pred eEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 92 EVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 92 ~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
. .......+|.+|++ ||=||+.++...+. ..++|++.+|..
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~ 90 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVG 90 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecC
Confidence 0 01111346777777 89999999886652 358999999974
No 94
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=58.41 E-value=1.2e+02 Score=26.01 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCC--CeEEEcCCcccHHH--HHHHHHHh-cC--CeEEEEeCccccc---ccccCCCCc----eEeecC
Q 029797 32 DAAIDLAHELVARR--LDLVYGGGSIGLMG--LVSKAVHH-GG--GNVIGIIPRTLMN---KEITGETVG----EVRPVA 97 (187)
Q Consensus 32 ~~A~~lG~~la~~g--~~lv~GGg~~GlM~--a~~~gA~~-~g--G~viGI~p~~~~~---~e~~~~~~~----~~~~~~ 97 (187)
++|++ +-.+|+.| ..+|++|=+ |+-+ ++.-.+.+ .+ ..=+=|+|..... ...-..++. .+-+.+
T Consensus 60 ~Ra~~-AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSD 137 (249)
T COG1010 60 ERAKE-AIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSD 137 (249)
T ss_pred HHHHH-HHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHh
Confidence 45543 33345554 556888754 7743 33333444 44 3446667755321 111122221 122222
Q ss_pred C-----HHHHHHHHHHhCCEEEEe--CCChh---hHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 98 D-----MHQRKAEMARHSDCFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 98 ~-----m~~R~~~m~~~sDa~Ivl--pGG~G---TL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
. .-++.-.....+|.+|+| |=+.+ -+.+.++++. +...-+.||+++..-|-
T Consensus 138 lLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrnagR 198 (249)
T COG1010 138 LLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRNAGR 198 (249)
T ss_pred cCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEecCCC
Confidence 2 234555557889999998 66655 4444554442 23344899999988886
No 95
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=58.32 E-value=1e+02 Score=25.31 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCEEEEeC--C--C-hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHH
Q 029797 101 QRKAEMARHSDCFIALP--G--G-YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLF 175 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp--G--G-~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v 175 (187)
+....++..||++|.-. . | .+++- |+++ .++|||..+..+. ..+.+ ...|.+...+|++++.
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~---Ea~a------~G~PvI~~~~~~~---~~i~~-~~~g~~~~~~d~~~~~ 325 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLA---YAIG------FGKPVISTPVGHA---EEVLD-GGTGLLVPPGDPAALA 325 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHH---HHHH------cCCCEEecCCCCh---heeee-CCCcEEEcCCCHHHHH
Confidence 34556678899987532 1 3 34544 4543 3899998776542 11111 1224555556777777
Q ss_pred HHHHh
Q 029797 176 KNLRS 180 (187)
Q Consensus 176 ~~l~~ 180 (187)
+.|..
T Consensus 326 ~~l~~ 330 (366)
T cd03822 326 EAIRR 330 (366)
T ss_pred HHHHH
Confidence 77654
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=58.26 E-value=9.5 Score=27.64 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHhCCEEEEeC-CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 102 RKAEMARHSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 102 R~~~m~~~sDa~Ivlp-GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.-..++..+|+.|..- =+.++-.-+++++ ..++|++..+. ++ ..+.+. ...+... .+|++++.+.|+.
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~------~~G~pvi~~~~-~~--~~~~~~-~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAM------AAGKPVIASDN-GA--EGIVEE-DGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHH------CTT--EEEEHH-HC--HCHS----SEEEE--TT-HHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHH------HhCCCEEECCc-ch--hhheee-cCCeEEE-CCCHHHHHHHHHH
Confidence 3455577799887642 1335556666666 35899999876 33 122222 2233333 7899999999986
Q ss_pred h
Q 029797 181 T 181 (187)
Q Consensus 181 ~ 181 (187)
.
T Consensus 132 l 132 (135)
T PF13692_consen 132 L 132 (135)
T ss_dssp H
T ss_pred H
Confidence 5
No 97
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=57.91 E-value=83 Score=26.11 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHHHHH-CCCeEEEcCCcccHHHHHHHHHHhc-CCeEEEEeC
Q 029797 37 LAHELVA-RRLDLVYGGGSIGLMGLVSKAVHHG-GGNVIGIIP 77 (187)
Q Consensus 37 lG~~la~-~g~~lv~GGg~~GlM~a~~~gA~~~-gG~viGI~p 77 (187)
.-+.|++ +|..+|+|-|+.|+++-.--.-+.+ |-++.-|-|
T Consensus 31 a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p 73 (202)
T COG0794 31 AVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGP 73 (202)
T ss_pred HHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecC
Confidence 3344444 6899999999999997654444443 444444444
No 98
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=57.43 E-value=1.1e+02 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCc
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKP 141 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kP 141 (187)
.||++..-||.|+. ++..-+.+..+..++|+
T Consensus 67 i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~ 97 (308)
T cd07062 67 IKAIIPTIGGDDSN-ELLPYLDYELIKKNPKI 97 (308)
T ss_pred CCEEEECCcccCHh-hhhhhcCHHHHhhCCCE
Confidence 58999999999985 45555677666655555
No 99
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=57.35 E-value=33 Score=29.78 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=33.4
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCc-EEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 112 CFIALPGGYGTLEELLEVITWAQLGIHDKP-VCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 112 a~IvlpGG~GTL~El~~a~~~~~lg~~~kP-vill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
=.|+..||=||++|+...+. .++.| +.++- .|- ..+|... +=.+-++++++++.|++
T Consensus 60 D~via~GGDGTv~evingl~-----~~~~~~LgilP-~GT-~NdfAr~-----Lgip~~~~~~Al~~i~~ 117 (301)
T COG1597 60 DTVIAAGGDGTVNEVANGLA-----GTDDPPLGILP-GGT-ANDFARA-----LGIPLDDIEAALELIKS 117 (301)
T ss_pred CEEEEecCcchHHHHHHHHh-----cCCCCceEEec-CCc-hHHHHHH-----cCCCchhHHHHHHHHHc
Confidence 35667799999999998774 34566 66653 222 1122221 11222357888877765
No 100
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=57.30 E-value=1e+02 Score=28.09 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCch-HHHH--HhHHhCCCc----CCCCC
Q 029797 98 DMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPL-MMAL--SSLLSATSL----SQHQT 170 (187)
Q Consensus 98 ~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l-~~~~--~~~~~~~~i----~~~~t 170 (187)
.|..|-.-++..||.+|.+ ||+.|.=||.. .+||.+++-. .-+- .+++ +.+.+=|++ +..-|
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeILs---------~~k~aLivPr-~~p~eEQliRA~Rl~~LGL~dvL~pe~lt 351 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEILS---------FGKPALIVPR-AAPREEQLIRAQRLEELGLVDVLLPENLT 351 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHHHh---------CCCceEEecc-CCCcHHHHHHHHHHHhcCcceeeCcccCC
Confidence 4455566677788887776 67999777752 3899887632 2221 1122 222222333 22356
Q ss_pred HHHHHHHHHh
Q 029797 171 LKNLFKNLRS 180 (187)
Q Consensus 171 ~~e~v~~l~~ 180 (187)
|+.+-++|+.
T Consensus 352 ~~~La~al~~ 361 (400)
T COG4671 352 PQNLADALKA 361 (400)
T ss_pred hHHHHHHHHh
Confidence 7777776654
No 101
>PRK13054 lipid kinase; Reviewed
Probab=57.13 E-value=28 Score=29.76 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcC---CeEEEEeCc
Q 029797 35 IDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG---GNVIGIIPR 78 (187)
Q Consensus 35 ~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~g---G~viGI~p~ 78 (187)
.++.+..++.++ .||..||. |....+..+..... ...+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 344444444443 45556666 98888888887642 247999993
No 102
>PRK13937 phosphoheptose isomerase; Provisional
Probab=57.11 E-value=29 Score=27.73 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCcccHH
Q 029797 27 RNCYSDAAIDLAHELVARRLDLVYGGGSIGLM 58 (187)
Q Consensus 27 ~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM 58 (187)
.+...+.|.++.+.|.+.+...++|.|..+..
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 36777889999999988889889998875553
No 103
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=57.03 E-value=19 Score=30.62 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHhCCEEEEe--CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 103 KAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 103 ~~~m~~~sDa~Ivl--pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
...+...||+++.- ..|.|.. +.|+++ .++||+..+..|. .+++++. ..|++...+|++++.+.|..
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~~--~e~i~~~-~~g~~~~~~~~~~l~~~i~~ 364 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGGP--RDIVVDG-VTGLLVDPRDPEALAAALRR 364 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCCH--HHHccCC-CCeEEeCCCCHHHHHHHHHH
Confidence 34457779998743 2334432 566664 3899988765543 2222221 23555555678888777764
No 104
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=56.97 E-value=31 Score=30.29 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.8
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
..|+|||..| .-||+|-..++++.- . .+||||+-
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~-~~kPVVlT 111 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-E-NDKPVVLT 111 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-c-CCCCEEEE
Confidence 4799999885 899999999998743 2 39999986
No 105
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=56.65 E-value=47 Score=28.79 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCEEEEe--CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNL 178 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivl--pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l 178 (187)
+....++..||++|.- ..|.|.. +.|+++ .++|||..+..|.+ +.+++. ..|.+-..+|++++.+.|
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~~~--e~i~~~-~~g~~~~~~d~~~la~~i 362 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGGLP--VAVADG-ETGLLVDGHDPADWADAL 362 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCCcH--hhhccC-CceEECCCCCHHHHHHHH
Confidence 4456678899998764 2445542 566664 38999998776543 222211 124444456777776665
Q ss_pred Hh
Q 029797 179 RS 180 (187)
Q Consensus 179 ~~ 180 (187)
.+
T Consensus 363 ~~ 364 (405)
T TIGR03449 363 AR 364 (405)
T ss_pred HH
Confidence 43
No 106
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=56.29 E-value=29 Score=29.65 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=29.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
+++|+|++|......+.-.+.++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 34677777766566676778999999999999998643
No 107
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=56.28 E-value=33 Score=30.36 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=29.2
Q ss_pred HHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 107 ARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 107 ~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
.+..|+|||+.| .-||+|-..++++.- . .+||||+-.
T Consensus 75 ~~~~dG~VVtHG-TDTme~TA~~Ls~~l-~-~~kPVVlTG 111 (336)
T TIGR00519 75 YDDYDGFVITHG-TDTMAYTAAALSFML-E-TPKPVVFTG 111 (336)
T ss_pred HhcCCeEEEccC-CchHHHHHHHHHHHc-C-CCCCEEEEC
Confidence 345899999985 799999999988743 2 399999863
No 108
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=55.66 E-value=25 Score=30.25 Aligned_cols=150 Identities=20% Similarity=0.286 Sum_probs=74.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCc
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~ 91 (187)
+++.|++++|..... .+.+...+++++|-++++-+++-|+ +.+.....+-.+.-|...|+ |..+ +.. .++
T Consensus 93 ~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC--~a~~l~k~gl~~~~g~~~gi-P~vl-~~G----sCv 162 (258)
T cd00587 93 TIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC--AAEALLKLGLEDGAGILGGL-PIVF-DMG----NCV 162 (258)
T ss_pred CCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch--HHHHHHhcCCccccccccCC-Ccee-ecc----cch
Confidence 556788888777543 3345568899999999998888875 33322222100001555554 3322 221 122
Q ss_pred eEeecCCHHHHHHHHHH---hCC--EEEEeCCChhhHHHHHHHH--HHHHhCCCCCcEEEEcCCCC-----chHHHHHh-
Q 029797 92 EVRPVADMHQRKAEMAR---HSD--CFIALPGGYGTLEELLEVI--TWAQLGIHDKPVCVANKPKS-----PLMMALSS- 158 (187)
Q Consensus 92 ~~~~~~~m~~R~~~m~~---~sD--a~IvlpGG~GTL~El~~a~--~~~~lg~~~kPvill~~~g~-----~l~~~~~~- 158 (187)
+....-.+..|-...+. ..| ++++.|+ -++|=.-+. .+..+ +.|+++ ++..- .+.+++..
T Consensus 163 D~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~l---GIpv~~-Gp~~P~~~s~~v~~~L~~~ 235 (258)
T cd00587 163 DNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFL---GVPVHV-GPPLPVDGSIPVWKVLTPE 235 (258)
T ss_pred hHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHc---CCceee-CCCCccccChhHHHHHHhc
Confidence 22222233344443332 233 4666666 344443333 23333 457654 33222 12333321
Q ss_pred HH--hCCCcCCCCCHHHHHHHH
Q 029797 159 LL--SATSLSQHQTLKNLFKNL 178 (187)
Q Consensus 159 ~~--~~~~i~~~~t~~e~v~~l 178 (187)
+. ..+.+....||+++.+.+
T Consensus 236 ~~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 236 ASDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred chhccCcEEEecCCHHHHHHHh
Confidence 11 124556678999988764
No 109
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=55.65 E-value=1.6e+02 Score=26.61 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHH--hCCEEEE-eCCChhhHHHHHHHHHH
Q 029797 56 GLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMAR--HSDCFIA-LPGGYGTLEELLEVITW 132 (187)
Q Consensus 56 GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~--~sDa~Iv-lpGG~GTL~El~~a~~~ 132 (187)
|+.-+..+-....|+. |.... +.... .+ .+.+..=-+++.. ..|++++ ++||+.-.+++.+.+.-
T Consensus 267 Gl~m~t~D~i~~~gg~-----paNPl--Dlgg~-a~----~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~ 334 (392)
T PRK14046 267 GLAMATMDMIKLAGGE-----PANFL--DVGGG-AS----PERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQ 334 (392)
T ss_pred cHHHHHHHHHHhcCCC-----CcCCE--EecCC-CC----HHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 8888888988888874 21111 11000 00 0111111122222 2466554 45676555777777654
Q ss_pred HHhC-CCCCcEEEEcCCCCchHHHHHhHHhCCC-cCCCCCHHHHHHHHHh
Q 029797 133 AQLG-IHDKPVCVANKPKSPLMMALSSLLSATS-LSQHQTLKNLFKNLRS 180 (187)
Q Consensus 133 ~~lg-~~~kPvill~~~g~~l~~~~~~~~~~~~-i~~~~t~~e~v~~l~~ 180 (187)
..-. ..+||+++ ...|-......+.|.+.|. +...+|.+|++++.-.
T Consensus 335 a~~~~~~~kPvvv-~l~G~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~ 383 (392)
T PRK14046 335 AAREVGIDVPLVV-RLAGTNVEEGRKILAESGLPIITADTLAEAAEKAVE 383 (392)
T ss_pred HHHhcCCCCcEEE-EcCCCCHHHHHHHHHHcCCCeeecCCHHHHHHHHHH
Confidence 2211 25799944 4555433333344555564 3446999999988654
No 110
>PRK13059 putative lipid kinase; Reviewed
Probab=55.48 E-value=48 Score=28.33 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=36.2
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
..| .|+.-||=||++|+...+. +. ..+.|+.++-. |- -.+|...+ ....+|+++++.|..
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~--~~-~~~~~lgviP~-GT-gNdfAr~l------gi~~~~~~a~~~i~~ 115 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMK--KL-NIDLPIGILPV-GT-ANDFAKFL------GMPTDIGEACEQILK 115 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHH--hc-CCCCcEEEECC-CC-HhHHHHHh------CCCCCHHHHHHHHHh
Confidence 345 5667899999999998763 21 13577777743 33 11233322 234578888887753
No 111
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=55.30 E-value=76 Score=26.09 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=41.8
Q ss_pred CCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEee--cCCHHHHHHHHHH---------hCCE
Q 029797 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRP--VADMHQRKAEMAR---------HSDC 112 (187)
Q Consensus 44 ~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~--~~~m~~R~~~m~~---------~sDa 112 (187)
.|-.||||| + |..+.++-.+.++.+..++-+ .+.+.|.+. ..+++ .+++-+..+..++ .-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad---~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQAD---SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eeccccccc---ceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 467899998 6 999999999988887665543 222222211 11222 1344333333332 3799
Q ss_pred EEEeCCCh
Q 029797 113 FIALPGGY 120 (187)
Q Consensus 113 ~IvlpGG~ 120 (187)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99998884
No 112
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=55.23 E-value=38 Score=28.12 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCEEEEeCCC------hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHH
Q 029797 101 QRKAEMARHSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNL 174 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG------~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~ 174 (187)
+....+...||+++.-.-. -|.-.=+.|+++ .++|+|..+..+.+ +++++. ..|++...+|++++
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~~--~~i~~~-~~g~~~~~~~~~~l 317 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGIP--ELVEDG-ETGLLVPPGDPEAL 317 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCcc--hhhhCC-CceEEeCCCCHHHH
Confidence 4455667889987764221 222334666664 48999987665443 222221 12444455688888
Q ss_pred HHHHHh
Q 029797 175 FKNLRS 180 (187)
Q Consensus 175 v~~l~~ 180 (187)
.+.|.+
T Consensus 318 ~~~i~~ 323 (355)
T cd03799 318 ADAIER 323 (355)
T ss_pred HHHHHH
Confidence 777765
No 113
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=55.10 E-value=28 Score=24.96 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCcEE
Q 029797 100 HQRKAEMARHSDCFIALPGG---YGTLEELLEVITWAQLGIHDKPVC 143 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG---~GTL~El~~a~~~~~lg~~~kPvi 143 (187)
..+.-.++..||+++.|||- -|..-|...|-.+ ++||+
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~l------Gl~V~ 90 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAKKL------GLPVI 90 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHC------CCeEe
Confidence 45566667799999999984 6999999987643 67765
No 114
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=54.87 E-value=45 Score=25.70 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=56.7
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHh--CCEEEEeCCChhhH
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARH--SDCFIALPGGYGTL 123 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~--sDa~IvlpGG~GTL 123 (187)
+.+|+=. +++..++.+.+.+.| +|+.- .. .. .|.. ++ ++.+=-+.+.+- .+++++.--+++--
T Consensus 4 valisQS--G~~~~~~~~~~~~~g---~g~s~--~v--s~-Gn~~-dv----~~~d~l~~~~~D~~t~~I~ly~E~~~d~ 68 (138)
T PF13607_consen 4 VALISQS--GALGTAILDWAQDRG---IGFSY--VV--SV-GNEA-DV----DFADLLEYLAEDPDTRVIVLYLEGIGDG 68 (138)
T ss_dssp EEEEES---HHHHHHHHHHHHHTT----EESE--EE--E--TT-S-SS-----HHHHHHHHCT-SS--EEEEEES--S-H
T ss_pred EEEEECC--HHHHHHHHHHHHHcC---CCeeE--EE--Ee-Cccc-cC----CHHHHHHHHhcCCCCCEEEEEccCCCCH
Confidence 4455543 367777888888877 34421 10 01 1111 11 333333333332 45677777778888
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEcCCCCc---------------hHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 124 EELLEVITWAQLGIHDKPVCVANKPKSP---------------LMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 124 ~El~~a~~~~~lg~~~kPvill~~~g~~---------------l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
.+++++..- ...+ ||||++.....+ -...++...++-=+...+|+||+++..+
T Consensus 69 ~~f~~~~~~--a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 69 RRFLEAARR--AARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRVDDLDELLDAAK 136 (138)
T ss_dssp HHHHHHHHH--HCCC-S-EEEEE---------------------HHHHHHHHHHCTEEEESSHHHHHHHHC
T ss_pred HHHHHHHHH--HhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEECCHHHHHHHHH
Confidence 888887753 3334 999999876431 1233344444433456689999988765
No 115
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=54.47 E-value=35 Score=30.78 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHh--HHhCCCcCCCCCHHHHHH
Q 029797 101 QRKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSS--LLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~--~~~~~~i~~~~t~~e~v~ 176 (187)
+....++..||++|.-. .+.|. =++|+++ .++|||..+..|.+ +.+++ .-..|++...+|++++.+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~~--eiv~~~~~~~~G~lv~~~d~~~la~ 392 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGIP--DIIPPDQEGKTGFLYTPGDVDDCVE 392 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCcH--hhhhcCCCCCceEEeCCCCHHHHHH
Confidence 34555788899987532 23332 2556664 38999988776652 33332 123366666678888877
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|..
T Consensus 393 ~i~~ 396 (465)
T PLN02871 393 KLET 396 (465)
T ss_pred HHHH
Confidence 7754
No 116
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=54.37 E-value=1.8e+02 Score=28.52 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHHHH---------------CCC-eEEEcCCcccHHHHHHHHHHhcCCeEEEE
Q 029797 27 RNCYSDAAIDLAHELVA---------------RRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (187)
Q Consensus 27 ~~~~~~~A~~lG~~la~---------------~g~-~lv~GGg~~GlM~a~~~gA~~~gG~viGI 75 (187)
...||+.|+++|..--. .++ .|=.+++|+|+|..+++..- .|+.||||
T Consensus 12 ~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p-v~slivGv 75 (780)
T KOG1098|consen 12 LDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP-VGSLIVGV 75 (780)
T ss_pred chHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC-CCceEEEe
Confidence 46788999998863311 233 34457789999988887544 79999999
No 117
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=54.23 E-value=53 Score=30.17 Aligned_cols=78 Identities=12% Similarity=0.251 Sum_probs=50.8
Q ss_pred EeecCCH-HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCH
Q 029797 93 VRPVADM-HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTL 171 (187)
Q Consensus 93 ~~~~~~m-~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~ 171 (187)
++..+++ ..+...+...||+++-..=|-|-..-+.+|. .|++||+-++.+-.+ ..++..|.+...+++
T Consensus 330 vvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~------~~G~pI~afd~t~~~-----~~~i~~g~l~~~~~~ 398 (438)
T TIGR02919 330 VKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAF------EYNLLILGFEETAHN-----RDFIASENIFEHNEV 398 (438)
T ss_pred cEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHH------HcCCcEEEEecccCC-----cccccCCceecCCCH
Confidence 4444443 3356677888888887765544444455444 479999988877443 234444777778888
Q ss_pred HHHHHHHHhh
Q 029797 172 KNLFKNLRST 181 (187)
Q Consensus 172 ~e~v~~l~~~ 181 (187)
+++++.|++.
T Consensus 399 ~~m~~~i~~l 408 (438)
T TIGR02919 399 DQLISKLKDL 408 (438)
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 118
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=54.18 E-value=1.4e+02 Score=26.77 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=51.7
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCC-CCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhH
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGE-TVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTL 123 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~-~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL 123 (187)
.+..|+|.| |+=-.+.+-|+..|.+|++|.-+... .+.+.+ ..+.++... -.+....+.+.+|++|..-+ .=|+
T Consensus 168 ~~V~I~G~G--GlGh~avQ~Aka~ga~Via~~~~~~K-~e~a~~lGAd~~i~~~-~~~~~~~~~~~~d~ii~tv~-~~~~ 242 (339)
T COG1064 168 KWVAVVGAG--GLGHMAVQYAKAMGAEVIAITRSEEK-LELAKKLGADHVINSS-DSDALEAVKEIADAIIDTVG-PATL 242 (339)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCeEEEEeCChHH-HHHHHHhCCcEEEEcC-CchhhHHhHhhCcEEEECCC-hhhH
Confidence 466799987 77777889999999999999543321 112211 112233322 22233333334999999999 8888
Q ss_pred HHHHHHHH
Q 029797 124 EELLEVIT 131 (187)
Q Consensus 124 ~El~~a~~ 131 (187)
+....++.
T Consensus 243 ~~~l~~l~ 250 (339)
T COG1064 243 EPSLKALR 250 (339)
T ss_pred HHHHHHHh
Confidence 88877764
No 119
>PRK13337 putative lipid kinase; Reviewed
Probab=53.62 E-value=1e+02 Score=26.39 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.| .|+.-||=||++|+...+.- . .+..|+.++- .|- ..+|...+ ....+++++++.|.+
T Consensus 58 ~d-~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgiiP-~GT-~NdfAr~l------gi~~~~~~a~~~i~~ 116 (304)
T PRK13337 58 FD-LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGIIP-VGT-TNDFARAL------HVPRDIEKAADVIIE 116 (304)
T ss_pred CC-EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEEC-CcC-HhHHHHHc------CCCCCHHHHHHHHHc
Confidence 35 57788999999999987631 1 1345777763 232 11222222 223568888887765
No 120
>PRK13055 putative lipid kinase; Reviewed
Probab=53.42 E-value=34 Score=29.93 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcC-CeEEEEeCc
Q 029797 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIPR 78 (187)
Q Consensus 34 A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~g-G~viGI~p~ 78 (187)
|.++.+..++.++ .||..||. |.+..+..+....+ ...+||+|.
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECC
Confidence 3444444444443 34445556 99999999988653 456999993
No 121
>PRK11914 diacylglycerol kinase; Reviewed
Probab=52.63 E-value=33 Score=29.31 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcCCeEEEEeCc
Q 029797 33 AAIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (187)
Q Consensus 33 ~A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~ 78 (187)
.+.++.+..++.++ .||..||. |.-..++.+.... ...+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 34555655555553 34555556 9999999887654 467999993
No 122
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=52.53 E-value=47 Score=29.16 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCEEEEe---CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCC-cCCCCCHHHHHH
Q 029797 101 QRKAEMARHSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATS-LSQHQTLKNLFK 176 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivl---pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~-i~~~~t~~e~v~ 176 (187)
+....+...||++|.- ..|+|.. +.|+++ .++|||.-+..|.+ +.+++- ..|+ +....|++++.+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~~--Eiv~~~-~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGIT--EFVLEG-ITGYHLAEPMTSDSIIS 336 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCcH--hhcccC-CceEEEeCCCCHHHHHH
Confidence 3445667899998863 2344442 566664 48999998876653 222211 1244 334567777777
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|..
T Consensus 337 ~I~~ 340 (380)
T PRK15484 337 DINR 340 (380)
T ss_pred HHHH
Confidence 7654
No 123
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=52.53 E-value=36 Score=29.14 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHhCCEEEEe--CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 104 AEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 104 ~~m~~~sDa~Ivl--pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
..++..||++|.- ..|.|.. +.||++ .++|||.-+..|.+ +++++- ..|++-..+|++++.+.|.+
T Consensus 267 ~~~~~~adi~v~pS~~Eg~~~~--~lEAma------~G~Pvv~s~~~g~~--e~i~~~-~~g~~~~~~d~~~la~~i~~ 334 (374)
T TIGR03088 267 PALMQALDLFVLPSLAEGISNT--ILEAMA------SGLPVIATAVGGNP--ELVQHG-VTGALVPPGDAVALARALQP 334 (374)
T ss_pred HHHHHhcCEEEeccccccCchH--HHHHHH------cCCCEEEcCCCCcH--HHhcCC-CceEEeCCCCHHHHHHHHHH
Confidence 3456789987743 2343332 566664 38999998776652 222221 12555556788888777764
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=52.42 E-value=23 Score=31.24 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=46.6
Q ss_pred hCCEEEE--eCCChh-------hHHHHHHHHHHHHhCC--CCCcEEEEcCCCC-c---hHHHHHhHHhC----C-CcCCC
Q 029797 109 HSDCFIA--LPGGYG-------TLEELLEVITWAQLGI--HDKPVCVANKPKS-P---LMMALSSLLSA----T-SLSQH 168 (187)
Q Consensus 109 ~sDa~Iv--lpGG~G-------TL~El~~a~~~~~lg~--~~kPvill~~~g~-~---l~~~~~~~~~~----~-~i~~~ 168 (187)
+-|..++ .|.+.| ..+++-+.....++.- .+..|+++..... . ...+++ .++. . ++-.+
T Consensus 72 HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLK-tLEEPp~~~~fiL~~ 150 (319)
T PRK08769 72 HPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLK-TLEEPSPGRYLWLIS 150 (319)
T ss_pred CCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHH-HhhCCCCCCeEEEEE
Confidence 4677777 576544 4888888776655542 2566777754433 1 122333 2222 2 34446
Q ss_pred CCHHHHHHHHHhhcccc
Q 029797 169 QTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 169 ~t~~e~v~~l~~~~~~~ 185 (187)
+.++.++.-|+|+|.++
T Consensus 151 ~~~~~lLpTIrSRCq~i 167 (319)
T PRK08769 151 AQPARLPATIRSRCQRL 167 (319)
T ss_pred CChhhCchHHHhhheEe
Confidence 88999999999999764
No 125
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.23 E-value=92 Score=25.23 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++.|.|+|+ + ..+.+++.++++|+.|+.-+
T Consensus 7 ~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~ 36 (227)
T PRK08862 7 IILITSAGS-V-------LGRTISCHFARLGATLILCD 36 (227)
T ss_pred EEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEc
Confidence 677776665 2 24566777777888876544
No 126
>PRK13055 putative lipid kinase; Reviewed
Probab=52.07 E-value=43 Score=29.28 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=34.4
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.|+ |+.-||=||++|+...+.- . ..+.|+.++- .|- -..|...| -.+.++|+++++.|.+
T Consensus 60 ~d~-vvv~GGDGTl~evvngl~~--~-~~~~~LgiiP-~GT-gNdfAr~L-----gi~~~~~~~a~~~l~~ 119 (334)
T PRK13055 60 FDL-IIAAGGDGTINEVVNGIAP--L-EKRPKMAIIP-AGT-TNDYARAL-----KIPRDNPVEAAKVILK 119 (334)
T ss_pred CCE-EEEECCCCHHHHHHHHHhh--c-CCCCcEEEEC-CCc-hhHHHHHc-----CCCCcCHHHHHHHHHc
Confidence 454 5566999999999987631 1 1245676663 333 11222222 1123378888888765
No 127
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=51.99 E-value=25 Score=26.06 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=19.3
Q ss_pred HHHhCCE--EEEeCCChhhHHHHHHHH
Q 029797 106 MARHSDC--FIALPGGYGTLEELLEVI 130 (187)
Q Consensus 106 m~~~sDa--~IvlpGG~GTL~El~~a~ 130 (187)
.....+. .|+.-||=||++|+...+
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHH
Confidence 3444544 888889999999998776
No 128
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=51.83 E-value=42 Score=29.29 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCEEEEe--CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNL 178 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivl--pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l 178 (187)
+....+...||++|.. |.+.|. =+.|+++ .++|||..+..|.+ +++++- ..|++...+|++++.+.|
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~~--e~i~~~-~~G~lv~~~d~~~la~~i 360 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPVR--EVITDG-ENGLLVDFFDPDALAAAV 360 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCch--hhcccC-CceEEcCCCCHHHHHHHH
Confidence 3344567889998864 334432 2566664 48999987765542 333221 235666667888888877
Q ss_pred Hhh
Q 029797 179 RST 181 (187)
Q Consensus 179 ~~~ 181 (187)
.+.
T Consensus 361 ~~l 363 (396)
T cd03818 361 IEL 363 (396)
T ss_pred HHH
Confidence 653
No 129
>PRK08105 flavodoxin; Provisional
Probab=51.08 E-value=21 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=25.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
|.+|.|+-+|..++.+ +.|+++++.+.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4578888888888633 568999999988887753
No 130
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=51.00 E-value=46 Score=24.95 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCC---cccHHHHHHHHHHhcCC
Q 029797 31 SDAAIDLAHELVA----RRL-DLVYGGG---SIGLMGLVSKAVHHGGG 70 (187)
Q Consensus 31 ~~~A~~lG~~la~----~g~-~lv~GGg---~~GlM~a~~~gA~~~gG 70 (187)
.+.|+.+|+.||+ .|+ .++++=+ +.|-+.|+++++.++|-
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl 117 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGL 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTC
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCC
Confidence 3678888888886 475 4566432 37999999999999884
No 131
>PRK07775 short chain dehydrogenase; Provisional
Probab=50.93 E-value=1.3e+02 Score=24.87 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=27.3
Q ss_pred cccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 6 KIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 6 ~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
+++....++.|.|.|+++. ....+.+.|+++|+.|+.-.
T Consensus 3 ~~~~~~~~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~ 41 (274)
T PRK07775 3 RFEPHPDRRPALVAGASSG--------IGAATAIELAAAGFPVALGA 41 (274)
T ss_pred CCCCCCCCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 4666666678999987652 34667777888999875444
No 132
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=50.86 E-value=44 Score=30.52 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=28.2
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
.|+|||..| .-||+|-..+++++- ...+||||+..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l-~~~~kPVVlTG 174 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMF-ETLPVPVVLVG 174 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHh-hCCCCCEEEEC
Confidence 789999886 899999999998743 22489999974
No 133
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=50.44 E-value=38 Score=27.91 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHHHHhCCEEEEeCCCh-hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 103 KAEMARHSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 103 ~~~m~~~sDa~IvlpGG~-GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.......||++|. |... |.-.=++|+++ .++|||..+..+.. +.+++ ...|.+...++++++.+.|.+
T Consensus 260 ~~~~~~~~d~~l~-~s~~e~~~~~~lEa~a------~g~PvI~~~~~~~~--~~i~~-~~~g~~~~~~~~~~l~~~i~~ 328 (364)
T cd03814 260 LAAAYASADVFVF-PSRTETFGLVVLEAMA------SGLPVVAPDAGGPA--DIVTD-GENGLLVEPGDAEAFAAALAA 328 (364)
T ss_pred HHHHHHhCCEEEE-CcccccCCcHHHHHHH------cCCCEEEcCCCCch--hhhcC-CcceEEcCCCCHHHHHHHHHH
Confidence 3456778998764 4321 11112556664 48999887765542 22221 123555556777777776654
No 134
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=50.10 E-value=52 Score=28.31 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc-CCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN-KPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~-~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
+........+|++|.-.-.-|.-.=+.|+++ .++||+..+ ..|.+ +.+++- ..|++...+|++++.+.|.
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma------~G~Pvv~s~~~~g~~--eiv~~~-~~G~lv~~~d~~~la~~i~ 319 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMTLLEAMS------YGIPCISSDCMSGPR--DIIKPG-LNGELYTPGNIDEFVGKLN 319 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChHHHHHHH------cCCCEEEeCCCCChH--HHccCC-CceEEECCCCHHHHHHHHH
Confidence 3344456678988854321121223555553 489999988 55442 222221 1356666688888888877
Q ss_pred hh
Q 029797 180 ST 181 (187)
Q Consensus 180 ~~ 181 (187)
..
T Consensus 320 ~l 321 (359)
T PRK09922 320 KV 321 (359)
T ss_pred HH
Confidence 53
No 135
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=48.75 E-value=24 Score=27.47 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCEEEEeCCCh---hhHHHHHHHHHHHHhC--CCCCcEEEEcCCCC---chHHHHHhHHhC-----CCcC
Q 029797 100 HQRKAEMARHSDCFIALPGGY---GTLEELLEVITWAQLG--IHDKPVCVANKPKS---PLMMALSSLLSA-----TSLS 166 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~---GTL~El~~a~~~~~lg--~~~kPvill~~~g~---~l~~~~~~~~~~-----~~i~ 166 (187)
.-|....-.+.|..++=|.+. -..+++.+...+.+.. ..+..|+++..-.. .....+-..++. -++-
T Consensus 58 ~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 58 SCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp HHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred HHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 344444466789988887764 5778888888776655 23566777754433 112222222332 2334
Q ss_pred CCCCHHHHHHHHHhhcccc
Q 029797 167 QHQTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 167 ~~~t~~e~v~~l~~~~~~~ 185 (187)
.+++++.++.-|+|+|.+.
T Consensus 138 ~t~~~~~il~TI~SRc~~i 156 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVI 156 (162)
T ss_dssp EES-GGGS-HHHHTTSEEE
T ss_pred EECChHHChHHHHhhceEE
Confidence 4699999999999999864
No 136
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.59 E-value=99 Score=26.92 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=40.4
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------------EEEcCCcc
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD------------------------------------LVYGGGSI 55 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~------------------------------------lv~GGg~~ 55 (187)
.+++|+|+.-. .++...+.+.++.++|.++|+. ++.| |.
T Consensus 4 ~~~~i~ii~~~---~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG-GD- 78 (296)
T PRK04539 4 PFHNIGIVTRP---NTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLG-GD- 78 (296)
T ss_pred CCCEEEEEecC---CCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEEC-Cc-
Confidence 36789999432 2466667888888888655532 3344 34
Q ss_pred cHHHHHHHHHHhcCCeEEEEeC
Q 029797 56 GLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 56 GlM~a~~~gA~~~gG~viGI~p 77 (187)
|-|=.+++-+...+-.++||-.
T Consensus 79 GT~L~aa~~~~~~~~PilGIN~ 100 (296)
T PRK04539 79 GTFLSVAREIAPRAVPIIGINQ 100 (296)
T ss_pred HHHHHHHHHhcccCCCEEEEec
Confidence 7777777766666778888854
No 137
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=48.43 E-value=1.5e+02 Score=24.15 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 102 RKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 102 R~~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
...-++..||++|.-. .|.|+ =+.|+++ .++|+|..+..|.. +...+ ..+++.. ++++++.+.|.
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~--~~~Eama------~G~PvI~~~~~~~~--~~~~~--~~~~~~~-~~~~~~~~~i~ 340 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGI--VVAEALA------CGTPVVTTDKVPWQ--ELIEY--GCGWVVD-DDVDALAAALR 340 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCc--HHHHHHh------cCCCEEEcCCCCHH--HHhhc--CceEEeC-CChHHHHHHHH
Confidence 3444567799987543 34443 2566664 48999988766542 33333 3344333 34466666665
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
+
T Consensus 341 ~ 341 (375)
T cd03821 341 R 341 (375)
T ss_pred H
Confidence 4
No 138
>PRK09004 FMN-binding protein MioC; Provisional
Probab=48.27 E-value=21 Score=27.46 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
|.+|.|+-+|..++.+ +.|+++.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 4578888888888633 568888888877777653
No 139
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=47.69 E-value=37 Score=27.32 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHhCCEEEEeCCChhhHHHHHHHHHHHH-----hC-CCCCcEEEEcC---CCC--c-hHHHHHhHHhCCCc--C-----
Q 029797 106 MARHSDCFIALPGGYGTLEELLEVITWAQ-----LG-IHDKPVCVANK---PKS--P-LMMALSSLLSATSL--S----- 166 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~~a~~~~~-----lg-~~~kPvill~~---~g~--~-l~~~~~~~~~~~~i--~----- 166 (187)
+...+|++|+.|=-.+|+.-+..-++-.- +. ..++|+++.-- .-| + ..+.++.|.+.|.. +
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 34569999999999999988764322111 11 24899998653 333 2 35667777776532 1
Q ss_pred ---------CCCCHHHHHHHHHh
Q 029797 167 ---------QHQTLKNLFKNLRS 180 (187)
Q Consensus 167 ---------~~~t~~e~v~~l~~ 180 (187)
.-.++||+++.+.+
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~ 176 (182)
T PRK07313 154 LACGDEGYGALADIETILETIEN 176 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHH
Confidence 12899999998865
No 140
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=47.67 E-value=41 Score=29.23 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHHH---HHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHH
Q 029797 100 HQRKAE---MARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNL 174 (187)
Q Consensus 100 ~~R~~~---m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~ 174 (187)
..|+.. |...+|++||++|- +.| .-|+++.. .+++|..++.....--.+|++....=|.....+||+.+
T Consensus 197 ~~RQ~a~~~La~~vD~miVVGg~~SsNT-~rL~eia~-----~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~l 270 (281)
T PRK12360 197 KKRQESAKELSKEVDVMIVIGGKHSSNT-QKLVKICE-----KNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWI 270 (281)
T ss_pred hhHHHHHHHHHHhCCEEEEecCCCCccH-HHHHHHHH-----HHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHH
Confidence 456553 45569999999987 333 23333332 12577777654433113455543222444445777766
Q ss_pred HHHHH
Q 029797 175 FKNLR 179 (187)
Q Consensus 175 v~~l~ 179 (187)
++.+-
T Consensus 271 i~eV~ 275 (281)
T PRK12360 271 IEEVI 275 (281)
T ss_pred HHHHH
Confidence 65543
No 141
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=47.66 E-value=1.5e+02 Score=24.08 Aligned_cols=114 Identities=14% Similarity=0.194 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhc-CCe---EEEEeCccccccccc-CCCCceEeecCCHHHH
Q 029797 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHG-GGN---VIGIIPRTLMNKEIT-GETVGEVRPVADMHQR 102 (187)
Q Consensus 28 ~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~-gG~---viGI~p~~~~~~e~~-~~~~~~~~~~~~m~~R 102 (187)
+...+.+..+.+.+.+.+...++|-|..+.+. ..-+.+- ++. -.|+ |......+.. ......-.-.+..+.|
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A--~~~a~~l~~~~~~~r~gl-~a~~l~~d~~~~ta~and~~~~~~f~~ 101 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANA--QHFAASMINRFETERPSL-PAIALNTDNVVLTAIANDRLHDEVYAK 101 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHH--HHHHHHHhccccccCCCc-ceEEecCcHHHHHHHhccccHHHHHHH
Confidence 45666677777777777888898876544432 2223221 110 0111 1110000000 0000000001122222
Q ss_pred -HHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 103 -KAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 103 -~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
-+......|++|++.+ .|.-.++..++...+ .++.|+|.+-.
T Consensus 102 ql~~~~~~gDvli~iS~-SG~s~~v~~a~~~Ak--~~G~~vI~IT~ 144 (196)
T PRK10886 102 QVRALGHAGDVLLAIST-RGNSRDIVKAVEAAV--TRDMTIVALTG 144 (196)
T ss_pred HHHHcCCCCCEEEEEeC-CCCCHHHHHHHHHHH--HCCCEEEEEeC
Confidence 3344566788888865 344455666655433 45888886644
No 142
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=47.49 E-value=31 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
++|+|+|.|.... +.++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~~-----~~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPG-----KFGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTT-----SHHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCC-----ChHHHHHHHHHhCCCEEE
Confidence 4799998776432 235667777777787765
No 143
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=47.30 E-value=21 Score=26.50 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
++|+|++|.+....+.-...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 366666666555567677899999999988888886
No 144
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=47.00 E-value=56 Score=29.98 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=28.9
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
.|+|||..| .-||+|-..+++++- ..+||||+..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTG 186 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVG 186 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeC
Confidence 799999985 799999999998754 4699999974
No 145
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=46.89 E-value=40 Score=29.38 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHhCCEEEEeCCChh---hHHHHHHHHHHHHhC--CCCCcEEEEcCCCCchHHHHHh---HHhC-----CCcCCCCCHHH
Q 029797 107 ARHSDCFIALPGGYG---TLEELLEVITWAQLG--IHDKPVCVANKPKSPLMMALSS---LLSA-----TSLSQHQTLKN 173 (187)
Q Consensus 107 ~~~sDa~IvlpGG~G---TL~El~~a~~~~~lg--~~~kPvill~~~g~~l~~~~~~---~~~~-----~~i~~~~t~~e 173 (187)
-.+-|..++.|-|.+ +.+++-+.....++. ..+..|+++..-..=-.+.... .++. -++-.+++++.
T Consensus 58 ~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ 137 (290)
T PRK05917 58 KIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQR 137 (290)
T ss_pred CCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhh
Confidence 346888888887654 678877665554443 2345566554333311111122 2222 13344699999
Q ss_pred HHHHHHhhcccc
Q 029797 174 LFKNLRSTCLCM 185 (187)
Q Consensus 174 ~v~~l~~~~~~~ 185 (187)
+..-|+|+|.+.
T Consensus 138 ll~TI~SRcq~~ 149 (290)
T PRK05917 138 LPPTIRSRSLSI 149 (290)
T ss_pred CcHHHHhcceEE
Confidence 999999999864
No 146
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=46.63 E-value=45 Score=25.12 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHC----CCe-EEE-cCC--cccHHHHHHHHHHhcC
Q 029797 31 SDAAIDLAHELVAR----RLD-LVY-GGG--SIGLMGLVSKAVHHGG 69 (187)
Q Consensus 31 ~~~A~~lG~~la~~----g~~-lv~-GGg--~~GlM~a~~~gA~~~g 69 (187)
.+.|+.+|+.||++ |+. +++ -|| +.|-+.|++++|.++|
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~G 111 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAG 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 57899999999873 433 222 222 3799999999999987
No 147
>PRK10494 hypothetical protein; Provisional
Probab=45.73 E-value=94 Score=26.39 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.5
Q ss_pred hCCEEEEeCCCh
Q 029797 109 HSDCFIALPGGY 120 (187)
Q Consensus 109 ~sDa~IvlpGG~ 120 (187)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 489999999985
No 148
>PRK12361 hypothetical protein; Provisional
Probab=45.72 E-value=45 Score=31.22 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcCCeEEEEeCc
Q 029797 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (187)
Q Consensus 34 A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~ 78 (187)
|.++.+..++.+. .||..||. |--..+..+..+. +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4555555555553 44455556 9888888888754 467999993
No 149
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=45.66 E-value=43 Score=30.66 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=51.4
Q ss_pred CeEEEcCCcccHHHHHHHHHHh--------------------cCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHH
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHH--------------------GGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAE 105 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~--------------------~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~ 105 (187)
+.|.+|-|+ |+.+--.+-+.+ .+|+|.||.-+.+.|.....-..+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 578889998 999988887776 36788888655554432221111111112222
Q ss_pred HHHhCCEEEEeCCChhhHHHHH-HHHHHHHhC
Q 029797 106 MARHSDCFIALPGGYGTLEELL-EVITWAQLG 136 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~-~a~~~~~lg 136 (187)
--+|.++||-.||+|-=.|+. ..|--..+|
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 235889999999998888875 334333444
No 150
>PRK12361 hypothetical protein; Provisional
Probab=45.58 E-value=70 Score=29.94 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=35.1
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHhh
Q 029797 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRST 181 (187)
Q Consensus 113 ~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~ 181 (187)
.|+.-||=||++|+...+. .++.|+.++-. |- -.+|...+. |.-....+++++++.|.+-
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgiiP~-GT-gNdfAr~L~--gi~~~~~~~~~a~~~i~~g 359 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGIIPL-GT-ANALSHALF--GLGSKLIPVEQACDNIIQG 359 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEecC-Cc-hhHHHHHhc--CCCCCCccHHHHHHHHHhC
Confidence 4666899999999997763 24677777632 32 112333321 1111115788888877643
No 151
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.96 E-value=76 Score=24.14 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
..+.-+...|...|+.+++-|.. =-.+...+.|.+.+..+|++.
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 34455666778899999999876 667788899999999999994
No 152
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=44.73 E-value=1.2e+02 Score=26.11 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccc
Q 029797 11 SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL 80 (187)
Q Consensus 11 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~ 80 (187)
.+++++.|-| ++.+ ..+++++.+|++|+.|+-=+.+.=-.+++++.-.+..|.-+=|+|-++
T Consensus 4 ~~~~~~lITG-ASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 4 MKGKTALITG-ASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CCCcEEEEEC-CCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 3445666665 4434 346677788889999987776655555566555554454555555443
No 153
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=44.64 E-value=50 Score=27.80 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHHHHhCCEEEEeCCCh-------hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHH
Q 029797 103 KAEMARHSDCFIALPGGY-------GTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLF 175 (187)
Q Consensus 103 ~~~m~~~sDa~IvlpGG~-------GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v 175 (187)
...++..||++|. |.-. |.-.=+.|+++ .++|||.-+..+.. +++.+- ..|++...+|++++.
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~~~~EA~a------~G~PvI~s~~~~~~--e~i~~~-~~g~~~~~~d~~~l~ 327 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPVVLLEAQA------SGVPVVATRHGGIP--EAVEDG-ETGLLVPEGDVAALA 327 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCchHHHHHHH------cCCCEEEeCCCCch--hheecC-CeeEEECCCCHHHHH
Confidence 3456788998765 3311 11222555554 48999987766542 222111 225555567888888
Q ss_pred HHHHhh
Q 029797 176 KNLRST 181 (187)
Q Consensus 176 ~~l~~~ 181 (187)
+.|.+.
T Consensus 328 ~~i~~l 333 (367)
T cd05844 328 AALGRL 333 (367)
T ss_pred HHHHHH
Confidence 777653
No 154
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=44.22 E-value=44 Score=29.27 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=30.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 51 (187)
|.+|+|++|......+.-...|+.+.+.|.+.||.++--
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 357888777766666766789999999999999988544
No 155
>PRK05920 aromatic acid decarboxylase; Validated
Probab=44.06 E-value=56 Score=26.99 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=48.8
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHh-------CCCCCcEEEEcCCCC--c-hHHHHHhHHhCCCc---------CCCC
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQL-------GIHDKPVCVANKPKS--P-LMMALSSLLSATSL---------SQHQ 169 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~l-------g~~~kPvill~~~g~--~-l~~~~~~~~~~~~i---------~~~~ 169 (187)
.+|++|+.|=-.+|+.-+..-++-.-+ -..++|+++.-..-+ + ..+.++.|.+.|.. ..-+
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p~ 172 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPAFYHKPQ 172 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCcccccCCCC
Confidence 689999999999999887643321111 125789998766555 2 35677777776543 2337
Q ss_pred CHHHHHHHHHhh
Q 029797 170 TLKNLFKNLRST 181 (187)
Q Consensus 170 t~~e~v~~l~~~ 181 (187)
|.+|.++.+-..
T Consensus 173 ~~~~~~~f~~~~ 184 (204)
T PRK05920 173 TIDDLVDFVVAR 184 (204)
T ss_pred CHHHHHHHHHHH
Confidence 888988877543
No 156
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=43.78 E-value=34 Score=26.03 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
.+|+|+|..+.+. .|++.|.+.||.|+
T Consensus 11 l~I~iIGaGrVG~---------~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 11 LKIGIIGAGRVGT---------ALARALARAGHEVV 37 (127)
T ss_dssp -EEEEECTSCCCC---------HHHHHHHHTTSEEE
T ss_pred cEEEEECCCHHHH---------HHHHHHHHCCCeEE
Confidence 4899999888763 47888888999875
No 157
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=43.70 E-value=69 Score=28.28 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=29.0
Q ss_pred HhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 108 ~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
...|+|||..| .-||+|-..++++.- ...+||||+-.
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlTG 116 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVTG 116 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEeC
Confidence 55799999985 799999999988642 23489999863
No 158
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=43.67 E-value=50 Score=30.66 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcC------CeEEEEeCc
Q 029797 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG------GNVIGIIPR 78 (187)
Q Consensus 34 A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~g------G~viGI~p~ 78 (187)
|+++.+.+...++ .||.-||. |....+..|-.... ...+||+|.
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 4455555555554 35555666 99999999987542 356999994
No 159
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=43.63 E-value=97 Score=25.50 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 103 KAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
.......+|+++.-. -|.|.. +.|+++ .++|||.-+..|.+ +.+++- ..|++. ++++++.+.|.
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~--~lEAma------~G~PvI~~~~~~~~--e~i~~~-~~g~l~--~~~~~l~~~l~ 303 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLV--MIEAMA------CGTPVIAFRRGAVP--EVVEDG-VTGFLV--DSVEELAAAVA 303 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchH--HHHHHh------cCCCEEEeCCCCch--hheeCC-CcEEEe--CCHHHHHHHHH
Confidence 345678899888752 455642 666664 38999998876653 222211 013332 23666666665
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
.
T Consensus 304 ~ 304 (335)
T cd03802 304 R 304 (335)
T ss_pred H
Confidence 3
No 160
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=43.61 E-value=51 Score=24.55 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHC----CCe-EEE--cC-CcccHHHHHHHHHHhcC
Q 029797 32 DAAIDLAHELVAR----RLD-LVY--GG-GSIGLMGLVSKAVHHGG 69 (187)
Q Consensus 32 ~~A~~lG~~la~~----g~~-lv~--GG-g~~GlM~a~~~gA~~~g 69 (187)
+.|+.+|+.||++ |+. +++ || -+.|-+.|++++|.++|
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~G 106 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAG 106 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 5788999999863 433 232 22 24789999999999987
No 161
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.57 E-value=1.1e+02 Score=21.47 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=51.0
Q ss_pred EEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCCh--hhHHH
Q 029797 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGY--GTLEE 125 (187)
Q Consensus 48 lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~--GTL~E 125 (187)
++-|| .........+-+.+.|+..+-. ... ... .....+-...+..+|++|++-+=+ .+...
T Consensus 3 liVGG-~~~~~~~~~~~~~~~G~~~~~h--g~~-------~~~------~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 3 LIVGG-REDRERRYKRILEKYGGKLIHH--GRD-------GGD------EKKASRLPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred EEEcC-CcccHHHHHHHHHHcCCEEEEE--ecC-------CCC------ccchhHHHHhcCCCCEEEEEeCCcChHHHHH
Confidence 34455 3355566666666677665554 110 000 011223445677899999998875 45555
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHH
Q 029797 126 LLEVITWAQLGIHDKPVCVANKPKS-PLMMALS 157 (187)
Q Consensus 126 l~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~ 157 (187)
+-.... .+++|+++.+..|+ .+.+.++
T Consensus 67 vk~~ak-----k~~ip~~~~~~~~~~~l~~~l~ 94 (97)
T PF10087_consen 67 VKKAAK-----KYGIPIIYSRSRGVSSLERALE 94 (97)
T ss_pred HHHHHH-----HcCCcEEEECCCCHHHHHHHHH
Confidence 544332 46899999988887 3444443
No 162
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=43.52 E-value=3.5e+02 Score=27.08 Aligned_cols=158 Identities=14% Similarity=0.104 Sum_probs=87.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEE--eCcccccccccC----
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI--IPRTLMNKEITG---- 87 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI--~p~~~~~~e~~~---- 87 (187)
+-+++|-|. .++|...+.++.+.+.+.++++-++.-|+. . |.. .....+.| + +|. .|..+......+
T Consensus 504 PG~~af~GC--a~~P~~~e~v~~Il~E~l~R~~iv~~tGcs-~-~~~-~~~~~e~g-k-~~~e~~~~~f~~~~lv~~G~~ 576 (781)
T PRK00941 504 PGVIAFVGC--SNYPNGTKEVALIAEEFLKRNYIVVTTGCS-A-MDI-GMYKDEDG-K-TLYEKYPGRFDAGGLVNVGSC 576 (781)
T ss_pred CCeEEEeCC--CCCcchHHHHHHHHHHHHhCCeEEEEcCcc-H-HHH-HHHHHHcC-C-cccccccccccccceEecCch
Confidence 345666555 345667788999999999999988766654 3 443 34455555 2 333 122221111100
Q ss_pred --------------CCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchH
Q 029797 88 --------------ETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLM 153 (187)
Q Consensus 88 --------------~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~ 153 (187)
.-+..+.+..++.+=.....+.--||++..| .+++...+....-. ..+.|||+ +.+|..+.
T Consensus 577 ~~~~h~~~~a~r~a~iFg~~~~~g~~~~i~dY~~~Rv~A~v~a~g---~~s~~~~a~a~G~~-~~G~Pvi~-gph~~kyr 651 (781)
T PRK00941 577 VSNAHITGAAIKIANIFAKRPLRGNYEEIADYILNRVGACGVAWG---AYSQKAAAIATGFN-RWGIPVVL-GPHGSKYR 651 (781)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhccEEEEecc---ccCHHHHHHHccHh-hcCCCEEE-CCchHHHH
Confidence 0111111223444444555666778887766 55666655532111 35899855 78888443
Q ss_pred H-HHHh--------HHhC--C-----------CcCCCCCHHHHHHHHHhhcc
Q 029797 154 M-ALSS--------LLSA--T-----------SLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 154 ~-~~~~--------~~~~--~-----------~i~~~~t~~e~v~~l~~~~~ 183 (187)
+ ++.. ..|. | ++..++|-+|+.-.+.+.|+
T Consensus 652 r~~~~~~~~~~~w~~~d~~~g~~~~~~p~p~~l~~~~e~~~ea~~~~ak~c~ 703 (781)
T PRK00941 652 RLYLGKADEEEKWKVYDARTGEKVKIEPAPEHLLYAAETKEEAIVMIAKLCI 703 (781)
T ss_pred HHHhcCCccccCCeEEecCCCCcccCCCCchHHhhhhhhHHHHHHHHHHHhC
Confidence 3 3332 1111 1 22234999999999999996
No 163
>PRK13057 putative lipid kinase; Reviewed
Probab=43.52 E-value=56 Score=27.69 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCc
Q 029797 33 AAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (187)
Q Consensus 33 ~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~ 78 (187)
.|.++.+.+.+.--.|+..||. |....+..+.... +..+||+|.
T Consensus 39 ~a~~~~~~~~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 39 DLSEVIEAYADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECC
Confidence 3445555543332244555556 9999999988765 467999993
No 164
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=43.19 E-value=93 Score=26.24 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=34.0
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCC-cEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDK-PVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~k-Pvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.| +|+.-||=||++|+...+.. ..++ |+.++.. |- ...+...+ ...++++++++.|.+
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~-Gt-~N~~a~~l------~i~~~~~~~~~~l~~ 116 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ----LDDIPALGILPL-GT-ANDFARSL------GIPEDLDKAAKLVIA 116 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc----CCCCCcEEEEcC-cC-HHHHHHHc------CCCCCHHHHHHHHHc
Confidence 45 45568999999999977621 1234 6666653 32 11222222 223678888877764
No 165
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=43.07 E-value=49 Score=26.54 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=48.2
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHh-----C-CCCCcEEEEc---CCCC--c-hHHHHHhHHhCCCc--CCC------
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQL-----G-IHDKPVCVAN---KPKS--P-LMMALSSLLSATSL--SQH------ 168 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~l-----g-~~~kPvill~---~~g~--~-l~~~~~~~~~~~~i--~~~------ 168 (187)
.+|++|+.|=..+|+.-+..-++-.-+ . ..++|+++.- ..-| + ..+.++.|.+.|.. .+.
T Consensus 76 ~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~ 155 (177)
T TIGR02113 76 KADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLAC 155 (177)
T ss_pred hhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccC
Confidence 689999999999999887643322111 1 2378998754 4444 2 46677777776633 221
Q ss_pred --------CCHHHHHHHHHh
Q 029797 169 --------QTLKNLFKNLRS 180 (187)
Q Consensus 169 --------~t~~e~v~~l~~ 180 (187)
.+|+++++.+.+
T Consensus 156 g~~g~g~~~~~~~i~~~~~~ 175 (177)
T TIGR02113 156 GDYGRGALADLDDILQTIKE 175 (177)
T ss_pred CCccccCCCCHHHHHHHHHH
Confidence 789999988865
No 166
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=43.06 E-value=78 Score=26.34 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=47.3
Q ss_pred HHHhCCEEEEeCCChhhHHHHHHHHHHHHh-----C-CCCCcEEEEc---CCCC--c-hHHHHHhHHhCCCc--CCC---
Q 029797 106 MARHSDCFIALPGGYGTLEELLEVITWAQL-----G-IHDKPVCVAN---KPKS--P-LMMALSSLLSATSL--SQH--- 168 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~~a~~~~~l-----g-~~~kPvill~---~~g~--~-l~~~~~~~~~~~~i--~~~--- 168 (187)
+.+-||++|+.|=..+|+.-+..=++-.-+ . ..++|+++.- ..-| | ..+.++.|.+.|.. .+.
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~ 172 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKR 172 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCc
Confidence 445699999999999999888643332111 1 1378998753 3333 2 35566666665532 110
Q ss_pred -----------CCHHHHHHHHHh
Q 029797 169 -----------QTLKNLFKNLRS 180 (187)
Q Consensus 169 -----------~t~~e~v~~l~~ 180 (187)
.+|++++..+..
T Consensus 173 lAcg~~G~Grm~ep~~I~~~i~~ 195 (209)
T PLN02496 173 LACGDYGNGAMAEPSLIYSTVRL 195 (209)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHH
Confidence 788888887764
No 167
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=42.98 E-value=51 Score=28.62 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=40.0
Q ss_pred HHHHHH---HHHhCCEEEEeCCC-hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHH
Q 029797 100 HQRKAE---MARHSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLF 175 (187)
Q Consensus 100 ~~R~~~---m~~~sDa~IvlpGG-~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v 175 (187)
..|+.. |...+|++||++|- +.--.-|+++.. .+++|..++.....--.+|++.--.=|.-...+|||.++
T Consensus 196 ~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~-----~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li 270 (280)
T TIGR00216 196 QNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAE-----EHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWII 270 (280)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHH-----HhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHH
Confidence 456554 45568999999987 322233444332 236788777554331134444321113334457777666
Q ss_pred HHHH
Q 029797 176 KNLR 179 (187)
Q Consensus 176 ~~l~ 179 (187)
+.+-
T Consensus 271 ~eVi 274 (280)
T TIGR00216 271 EEVI 274 (280)
T ss_pred HHHH
Confidence 5543
No 168
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=42.97 E-value=63 Score=28.36 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHH---HHHhCCEEEEeCCC----hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHH
Q 029797 100 HQRKAE---MARHSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLK 172 (187)
Q Consensus 100 ~~R~~~---m~~~sDa~IvlpGG----~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~ 172 (187)
..|++. |...+|.+||++|- +.-|-|+.+- ++.|-++++....-=+.|++.-..-|.-...+|||
T Consensus 200 ~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~--------~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd 271 (294)
T COG0761 200 QNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKR--------HGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPD 271 (294)
T ss_pred hhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHH--------hCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCH
Confidence 345444 45568999999876 3556666543 36788888765442256676622113333345665
Q ss_pred HHH----HHHHhhc
Q 029797 173 NLF----KNLRSTC 182 (187)
Q Consensus 173 e~v----~~l~~~~ 182 (187)
.++ ++|+..+
T Consensus 272 ~lV~~Vi~~l~~~~ 285 (294)
T COG0761 272 WLVQEVIAKLRELG 285 (294)
T ss_pred HHHHHHHHHHHHhc
Confidence 554 4555443
No 169
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=42.73 E-value=65 Score=27.43 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHhCCEEEEeCC--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 106 MARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 106 m~~~sDa~IvlpG--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
+...||++|...- |.| .=+.||++ +++|||..+..+.+ .+++.+- ..|++....|++++.+.|..
T Consensus 275 ~~~~ad~~v~~S~~Eg~~--~~~lEAma------~G~PvI~~~~~~g~-~~~v~~~-~~G~lv~~~d~~~la~~i~~ 341 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFG--LSLMEALS------HGLPVISYDVNYGP-SEIIEDG-ENGYLVPKGDIEALAEAIIE 341 (372)
T ss_pred HHhhhhEEEecccccccC--hHHHHHHh------CCCCEEEecCCCCc-HHHcccC-CCceEeCCCcHHHHHHHHHH
Confidence 4667999887652 333 22556653 58999998765321 1122110 13566666778877777654
No 170
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=42.32 E-value=37 Score=25.37 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=20.7
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEE
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI 75 (187)
+.||+||+. |+=.+.++...+.|+.++.+
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~ 30 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVIL 30 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEE
Confidence 457888865 88888888888886655444
No 171
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.19 E-value=1.4e+02 Score=26.17 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=37.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------------------------------EEEcC
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD----------------------------------------LVYGG 52 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~----------------------------------------lv~GG 52 (187)
|++|+|+.-. ..+...+.+.++.++|.++|+. ++.||
T Consensus 1 m~~igiv~n~---~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYND---GKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcC---CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeC
Confidence 4578998432 2355667788888877665533 33443
Q ss_pred CcccHHHHHHHHHHhcCCeEEEEeC
Q 029797 53 GSIGLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 53 g~~GlM~a~~~gA~~~gG~viGI~p 77 (187)
. |-+=-+++-+...+-.++||-.
T Consensus 78 -D-GTlL~aar~~~~~~iPilGIN~ 100 (305)
T PRK02649 78 -D-GTVLSAARQLAPCGIPLLTINT 100 (305)
T ss_pred -c-HHHHHHHHHhcCCCCcEEEEeC
Confidence 5 7666666666666778888853
No 172
>PRK13938 phosphoheptose isomerase; Provisional
Probab=42.17 E-value=1.9e+02 Score=23.53 Aligned_cols=121 Identities=13% Similarity=0.028 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCe-----EEEEeCcccccccc--cCCCCceEeecCCHH
Q 029797 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGN-----VIGIIPRTLMNKEI--TGETVGEVRPVADMH 100 (187)
Q Consensus 28 ~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~-----viGI~p~~~~~~e~--~~~~~~~~~~~~~m~ 100 (187)
+...+.|..+.+.+.+.+-..++|-|..|++..-...-+ .+.. -+|+.......... ..+..+ ....+.
T Consensus 29 ~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L-~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~---~~~~~~ 104 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAEL-TGHLIFDRPPLGAEALHANSSHLTAVANDYD---YDTVFA 104 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHc-CCCccCCcCccceEEEeCChHHHHHhhcccc---HHHHHH
Confidence 345566666666677778888999877555533222212 1211 11111000000000 000000 000112
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHH
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMA 155 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~ 155 (187)
.-........|.+|++... |.-.|+.+++...+ .++.|+|.+-.+.. ++.+.
T Consensus 105 ~~~~~~~~~~DllI~iS~S-G~t~~vi~a~~~Ak--~~G~~vI~iT~~~~s~La~~ 157 (196)
T PRK13938 105 RALEGSARPGDTLFAISTS-GNSMSVLRAAKTAR--ELGVTVVAMTGESGGQLAEF 157 (196)
T ss_pred HHHHhcCCCCCEEEEEcCC-CCCHHHHHHHHHHH--HCCCEEEEEeCCCCChhhhh
Confidence 2223445557777777544 55556666665433 46888887655443 54443
No 173
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=41.68 E-value=58 Score=28.53 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHH---HHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHH
Q 029797 100 HQRKAE---MARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNL 174 (187)
Q Consensus 100 ~~R~~~---m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~ 174 (187)
..|+.- |...+|++||++|- +.| .-|+++.. .+++|...+.....--.+|++....=|.....+||+.+
T Consensus 198 ~~RQ~a~~~La~~vD~miVVGg~~SsNT-~kL~~i~~-----~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~l 271 (298)
T PRK01045 198 QNRQEAVKELAPQADLVIVVGSKNSSNS-NRLREVAE-----EAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWL 271 (298)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCccH-HHHHHHHH-----HHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHH
Confidence 456554 45568999999887 344 33444332 13678777654433112445432222333445777755
Q ss_pred HHHH
Q 029797 175 FKNL 178 (187)
Q Consensus 175 v~~l 178 (187)
++.+
T Consensus 272 i~eV 275 (298)
T PRK01045 272 VQEV 275 (298)
T ss_pred HHHH
Confidence 5544
No 174
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=41.61 E-value=70 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=31.0
Q ss_pred eEeecCCH----HHHHHHHHHh----CCEEEEeCCC--hhh--HHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 92 EVRPVADM----HQRKAEMARH----SDCFIALPGG--YGT--LEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 92 ~~~~~~~m----~~R~~~m~~~----sDa~IvlpGG--~GT--L~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
++.++.+. .+|+..+.+. .|++||++|- +.| |.||.+. +++|...++..
T Consensus 337 ~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~--------~g~~sy~Ie~~ 397 (460)
T PLN02821 337 HFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEH--------KGIPSYWIDSE 397 (460)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHH--------hCCCEEEECCH
Confidence 34444555 7888888777 4899999886 344 4555432 25777666543
No 175
>PRK12359 flavodoxin FldB; Provisional
Probab=41.36 E-value=57 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCeEEEEeCcc
Q 029797 59 GLVSKAVHHGGGNVIGIIPRT 79 (187)
Q Consensus 59 ~a~~~gA~~~gG~viGI~p~~ 79 (187)
+...+-..+.|+.++|-.|..
T Consensus 102 ~~l~~~l~~~Ga~ivG~~~~~ 122 (172)
T PRK12359 102 GMLHDKLAPKGVKFVGYWPTE 122 (172)
T ss_pred HHHHHHHHhCCCeEEeeEeCC
Confidence 344444445666777766543
No 176
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=41.19 E-value=58 Score=26.20 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHH
Q 029797 105 EMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNL 174 (187)
Q Consensus 105 ~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~ 174 (187)
-+...||++|.-. .|.|+ =+.|+++. ++|+|..+..+.. +.+++- ..|++...++++++
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~--~~~Ea~~~------G~PvI~~~~~~~~--e~i~~~-~~g~~~~~~~~~~~ 319 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPN--VLLEAMAL------GTPVVATDCPGPR--EILEDG-ENGLLVPVGDEAAL 319 (353)
T ss_pred HHHHhCCEEEeCcccCCCCc--HHHHHHHh------CCCEEEcCCCChH--HHhcCC-CceEEECCCCHHHH
Confidence 3577799887643 23333 25666643 8999987665442 222221 12555666777776
No 177
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=41.03 E-value=59 Score=27.65 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCcccHHHHHHHHHHhcC-C--eEEEEeC
Q 029797 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG-G--NVIGIIP 77 (187)
Q Consensus 34 A~~lG~~la~~g~-~lv~GGg~~GlM~a~~~gA~~~g-G--~viGI~p 77 (187)
|.++++.+++.++ .||.-||. |....+..+..+.+ + ..+||+|
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP 87 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLP 87 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEc
Confidence 3445555555543 34444555 99999999998653 2 3599999
No 178
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=41.02 E-value=30 Score=31.72 Aligned_cols=28 Identities=39% Similarity=0.619 Sum_probs=20.0
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEE
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI 75 (187)
-++|-|||+.|+|.|..-+ ++|.+|+=|
T Consensus 5 dviIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred eEEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 3567799999999887654 456665554
No 179
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=41.02 E-value=1.7e+02 Score=25.24 Aligned_cols=68 Identities=18% Similarity=0.373 Sum_probs=39.7
Q ss_pred CCCeEEE---cCCc-ccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCC
Q 029797 44 RRLDLVY---GGGS-IGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGG 119 (187)
Q Consensus 44 ~g~~lv~---GGg~-~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG 119 (187)
....+|+ |||. +|.--.+++-+.+.|-.+++|.|..+. .|.....+ .-...-+.|.+.+|++|+++--
T Consensus 85 ~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~~~~~-------nA~~~l~~L~~~~d~~ividN~ 156 (304)
T cd02201 85 ADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGKKRMR-------QAEEGLEELRKHVDTLIVIPND 156 (304)
T ss_pred CCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccchhHHH-------HHHHHHHHHHHhCCEEEEEecH
Confidence 4555555 4443 356666778888888888888653321 11111111 1134455567889999999843
No 180
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=41.01 E-value=59 Score=24.06 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=22.5
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCC----eEEEEeCcc
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGG----NVIGIIPRT 79 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG----~viGI~p~~ 79 (187)
.|+..||. |....+..+-.+... ..+||+|.-
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 45555556 988888888876654 468998843
No 181
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=40.89 E-value=2.7e+02 Score=25.04 Aligned_cols=67 Identities=10% Similarity=-0.035 Sum_probs=36.7
Q ss_pred HHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhH-----HhCCCcCCCCCHHHHHH
Q 029797 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSL-----LSATSLSQHQTLKNLFK 176 (187)
Q Consensus 104 ~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~-----~~~~~i~~~~t~~e~v~ 176 (187)
..+...||+++.-. -+.|.. +.|+++ .++|+|.-+..|.. +.+.+. -..|++-...|++++.+
T Consensus 360 ~~~~~~aDv~l~pS~~E~~gl~--~lEAma------~G~pvI~s~~gg~~--e~v~~~~~~~~~~~G~l~~~~d~~~la~ 429 (473)
T TIGR02095 360 HLIYAGADFILMPSRFEPCGLT--QLYAMR------YGTVPIVRRTGGLA--DTVVDGDPEAESGTGFLFEEYDPGALLA 429 (473)
T ss_pred HHHHHhCCEEEeCCCcCCcHHH--HHHHHH------CCCCeEEccCCCcc--ceEecCCCCCCCCceEEeCCCCHHHHHH
Confidence 34678899887532 344532 244443 47899887776652 111111 12355555567777666
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|.+
T Consensus 430 ~i~~ 433 (473)
T TIGR02095 430 ALSR 433 (473)
T ss_pred HHHH
Confidence 6543
No 182
>PRK08727 hypothetical protein; Validated
Probab=40.83 E-value=2e+02 Score=23.55 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=63.2
Q ss_pred CCeEEEcCCccc---HHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEE-----e
Q 029797 45 RLDLVYGGGSIG---LMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIA-----L 116 (187)
Q Consensus 45 g~~lv~GGg~~G---lM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~Iv-----l 116 (187)
.+.+++|....| +..|++..+.+.|-.++-+..... .. .+... ..-....|++|+ +
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~-----~~----------~~~~~-~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA-----AG----------RLRDA-LEALEGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh-----hh----------hHHHH-HHHHhcCCEEEEeCcccc
Confidence 456788763333 888888888887765555421111 00 11111 112345666555 3
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc-hHHHHHhHHhC---CCcCC--CCCHHHHHHHHHhhc
Q 029797 117 PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP-LMMALSSLLSA---TSLSQ--HQTLKNLFKNLRSTC 182 (187)
Q Consensus 117 pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~-l~~~~~~~~~~---~~i~~--~~t~~e~v~~l~~~~ 182 (187)
+|--.+..+++..+...+ ..++++|+.....-. +......+..+ +.... .-+.++..+.+++.|
T Consensus 106 ~~~~~~~~~lf~l~n~~~--~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 106 AGQREDEVALFDFHNRAR--AAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred cCChHHHHHHHHHHHHHH--HcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 444556677877664432 235677776544332 33334566554 43322 245677777777765
No 183
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=40.52 E-value=1.9e+02 Score=25.03 Aligned_cols=62 Identities=26% Similarity=0.246 Sum_probs=37.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCcccHHHHH
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRL------------------------------DLVYGGGSIGLMGLV 61 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~------------------------------~lv~GGg~~GlM~a~ 61 (187)
++++|+|+.-.. .+...+.+.++.++|.++|+ .+++-||. |.|--+
T Consensus 4 ~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 79 (291)
T PRK02155 4 QFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLGI 79 (291)
T ss_pred cCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHHH
Confidence 356799984322 34444566666666644332 23445555 777777
Q ss_pred HHHHHhcCCeEEEEeC
Q 029797 62 SKAVHHGGGNVIGIIP 77 (187)
Q Consensus 62 ~~gA~~~gG~viGI~p 77 (187)
++.....+-.++||-.
T Consensus 80 ~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 80 GRQLAPYGVPLIGINH 95 (291)
T ss_pred HHHhcCCCCCEEEEcC
Confidence 7766666778888843
No 184
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=40.51 E-value=1.4e+02 Score=26.57 Aligned_cols=40 Identities=28% Similarity=0.239 Sum_probs=31.1
Q ss_pred HhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 108 ~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
..=|.+|+.||+.||..-+..-++ ++ .++.+||=++..+.
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~--~~-~~~~~ViG~~v~~~ 218 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLA--QL-GPDVEVIGIDVSAD 218 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhh--hc-cCCCceEEEeecCC
Confidence 456899999999999988876653 22 26788888788777
No 185
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=40.46 E-value=54 Score=28.87 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=49.7
Q ss_pred HHHHHHHhCCEEEEeCCChh---hHHHHHHHHHHHHhC--CCCCcEEEEcCCCC-c---hHHHHHhHHh---C-CCcCCC
Q 029797 102 RKAEMARHSDCFIALPGGYG---TLEELLEVITWAQLG--IHDKPVCVANKPKS-P---LMMALSSLLS---A-TSLSQH 168 (187)
Q Consensus 102 R~~~m~~~sDa~IvlpGG~G---TL~El~~a~~~~~lg--~~~kPvill~~~g~-~---l~~~~~~~~~---~-~~i~~~ 168 (187)
|...--.+-|.+.+-|.+.+ ..|++-+.....+.. ..+..|++++.... . ...+++.|=+ . -++-.+
T Consensus 64 ~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 64 QLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred HHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 33333446788888886533 478888877666554 23566666643333 1 2233332222 1 133345
Q ss_pred CCHHHHHHHHHhhcccc
Q 029797 169 QTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 169 ~t~~e~v~~l~~~~~~~ 185 (187)
++++.+...|+|+|...
T Consensus 144 ~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 144 HQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred CChhhCcHHHHhhceee
Confidence 88999999999999763
No 186
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=40.41 E-value=36 Score=27.07 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=36.9
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCch-HHHHHhHHhCCCcCCCCCHHHHHHHHHhhcc
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPL-MMALSSLLSATSLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l-~~~~~~~~~~~~i~~~~t~~e~v~~l~~~~~ 183 (187)
..+.+.++ |.-++..+...+.+..+- ....+++. ....++ ...+...+..|.-...--|+++.++|++..|
T Consensus 98 ~~~~~~ii--G~D~l~~l~~W~~~~~i~-~~~~l~~~-~~~~~ISST~IR~~l~~g~~i~~lvp~~V~~yI~~~~L 169 (174)
T PRK08887 98 EADLTFVI--GPDNFLKFAKFYKADEIT-QRWTVMAC-PEKVPIRSTDIRNALQNGKDISHLTTPGVARLLKEHQL 169 (174)
T ss_pred CCeEEEEE--ccchHHHHHHhCCHHHHH-hhCeEEEe-CCCCCcCHHHHHHHHHcCCChhHhCCHHHHHHHHHccc
Confidence 44555555 666776666554444331 12233333 212222 2344444444543334678888899988765
No 187
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=40.10 E-value=60 Score=26.59 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHh-CCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNL 178 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~l-g~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l 178 (187)
++....++.+|.+|+++ -.++.. -++.+... ..++.|++++|.+--++. +...+....+.+|++..|
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~~~-------~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTPLS-------PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCCCC-------CcCCEEEECCHHHHHHHh
Confidence 44455567899999976 223322 23322221 246899999998755432 223444556788888765
No 188
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=40.03 E-value=3e+02 Score=25.28 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHC-----CCeEEEcCCccc---HHHHHHHHHHh--cCCeEEEEeCcccccccccCCCCceEeecCCHHH
Q 029797 32 DAAIDLAHELVAR-----RLDLVYGGGSIG---LMGLVSKAVHH--GGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQ 101 (187)
Q Consensus 32 ~~A~~lG~~la~~-----g~~lv~GGg~~G---lM~a~~~gA~~--~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~ 101 (187)
+.|...++.++++ +..++||+...| ||.|++....+ .+..|+-+.+..+. .+.... +... ...+..
T Consensus 124 ~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-~~~~~~-l~~~--~~~~~~ 199 (450)
T PRK14087 124 EQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-RKAVDI-LQKT--HKEIEQ 199 (450)
T ss_pred HHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHH-HHHh--hhHHHH
Confidence 3466666666653 234577763333 88888886654 35566655443321 111100 0000 011211
Q ss_pred HHHHHHHhCCEEEE-----eCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 102 RKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 102 R~~~m~~~sDa~Iv-----lpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
. ......+|++|+ +.|--.|.+|++..+...+ ..++++|+..
T Consensus 200 ~-~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIlts 246 (450)
T PRK14087 200 F-KNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSS 246 (450)
T ss_pred H-HHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEEC
Confidence 1 112356787664 4566778999999886544 3467776653
No 189
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=40.00 E-value=67 Score=26.13 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=29.3
Q ss_pred cceEEEEcCCCCCCCh-HHHHHHHHHHHHHHHCCCeE-EEcC
Q 029797 13 FKRVCVFCGSSTGKRN-CYSDAAIDLAHELVARRLDL-VYGG 52 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~-~~~~~A~~lG~~la~~g~~l-v~GG 52 (187)
|++|+|+|.-..++.. =+...+++|+..++++|+.+ ||.-
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~ 42 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCR 42 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEc
Confidence 6789999754444322 46788999999999988876 5543
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=39.64 E-value=67 Score=28.30 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=47.6
Q ss_pred HHHHHHHhCCEEEEeCCC---hhhHHHHHHHHHHHHhC--CCCCcEEEEcCCCCchHHHHHhHH---hC----C-CcCCC
Q 029797 102 RKAEMARHSDCFIALPGG---YGTLEELLEVITWAQLG--IHDKPVCVANKPKSPLMMALSSLL---SA----T-SLSQH 168 (187)
Q Consensus 102 R~~~m~~~sDa~IvlpGG---~GTL~El~~a~~~~~lg--~~~kPvill~~~g~~l~~~~~~~~---~~----~-~i~~~ 168 (187)
|...--.+-|.+++-|.+ .=+.|++-+.....+.. ..+..|+++..-..=.......|+ +. . ++-.+
T Consensus 66 ~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (319)
T PRK06090 66 ELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVT 145 (319)
T ss_pred HHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 333334557777777743 33577887766554433 235667776544331111222222 22 1 33446
Q ss_pred CCHHHHHHHHHhhcccc
Q 029797 169 QTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 169 ~t~~e~v~~l~~~~~~~ 185 (187)
++++.++.-|+|+|...
T Consensus 146 ~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 146 HNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CChhhChHHHHhcceeE
Confidence 99999999999999753
No 191
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=39.61 E-value=59 Score=24.52 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHC----CCeE-EE--cC-CcccHHHHHHHHHHhcC
Q 029797 32 DAAIDLAHELVAR----RLDL-VY--GG-GSIGLMGLVSKAVHHGG 69 (187)
Q Consensus 32 ~~A~~lG~~la~~----g~~l-v~--GG-g~~GlM~a~~~gA~~~g 69 (187)
+.|+.+|+.||++ |+.= ++ || -+.|-+.|++++|.++|
T Consensus 69 ~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~G 114 (117)
T PRK05593 69 EAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAG 114 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhC
Confidence 5688899988873 4332 22 22 24789999999999987
No 192
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=39.42 E-value=51 Score=28.31 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCe--EEEEeC
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGN--VIGIIP 77 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~--viGI~p 77 (187)
..++++++.+-.+|..+|+.-+. +.-..+.+.|.++|.. +||+--
T Consensus 175 ~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d~ 221 (306)
T PF02608_consen 175 AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVDS 221 (306)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEecc
Confidence 57889999999999999998432 5566677888888887 999843
No 193
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=39.38 E-value=69 Score=21.93 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=26.1
Q ss_pred CEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc
Q 029797 111 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP 151 (187)
Q Consensus 111 Da~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~ 151 (187)
=-+|.+| +|++||..+.+. ++|.. |--+++.+|-.
T Consensus 19 GKvi~lP---~SleeLl~ia~~-kfg~~--~~~v~~~dgae 53 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIASE-KFGFS--ATKVLNEDGAE 53 (69)
T ss_pred CEEEEcC---ccHHHHHHHHHH-HhCCC--ceEEEcCCCCE
Confidence 4578889 699999988754 67753 66678888874
No 194
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.37 E-value=87 Score=26.91 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 51 (187)
++|+||. +.+ ++...+.+.++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3688984 333 3556678899999999999988763
No 195
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=39.28 E-value=77 Score=27.83 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhC--CCCCcEEEEcCCCC-c------hHHHHHhHHhCC-CcCCCCCHHHHHHHHHhhcccc
Q 029797 122 TLEELLEVITWAQLG--IHDKPVCVANKPKS-P------LMMALSSLLSAT-SLSQHQTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 122 TL~El~~a~~~~~lg--~~~kPvill~~~g~-~------l~~~~~~~~~~~-~i~~~~t~~e~v~~l~~~~~~~ 185 (187)
+.+++-+.....++. ..+..|+++..... . +...++..-... ++-.+.+++.+...|+|+|.+.
T Consensus 94 ~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~ 167 (325)
T PRK08699 94 KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167 (325)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhh
Confidence 477787777666654 24567776654433 1 233333322112 3444688999999999999864
No 196
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=39.26 E-value=61 Score=27.92 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=27.8
Q ss_pred CcccccccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 1 MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 1 ~~~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
||.||.-|... +|.|.|++.. ....+.+.|.++|+.|+.
T Consensus 1 ~~~~~~~~~~~---~vLVtG~~Gf--------IG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 1 MELEGRESATG---TYCVTGATGY--------IGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred CCccccccCCC---EEEEECCCcH--------HHHHHHHHHHHCCCEEEE
Confidence 78888766554 6899987652 345667777788998764
No 197
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.16 E-value=2e+02 Score=25.19 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=38.6
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC----------------------------------------eEEE
Q 029797 11 SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRL----------------------------------------DLVY 50 (187)
Q Consensus 11 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~----------------------------------------~lv~ 50 (187)
+++++|+|+.-. . .+...+.+.++.++|.++|+ .++.
T Consensus 3 ~~~~~I~iv~~~--~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~l 79 (306)
T PRK03372 3 TASRRVLLVAHT--G-RDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVL 79 (306)
T ss_pred CCccEEEEEecC--C-CHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEE
Confidence 456679999432 2 34555677777777755443 2333
Q ss_pred cCCcccHHHHHHHHHHhcCCeEEEEeC
Q 029797 51 GGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 51 GGg~~GlM~a~~~gA~~~gG~viGI~p 77 (187)
| |. |-|=.+++-+...+-.++||-.
T Consensus 80 G-GD-GT~L~aar~~~~~~~PilGIN~ 104 (306)
T PRK03372 80 G-GD-GTILRAAELARAADVPVLGVNL 104 (306)
T ss_pred c-CC-HHHHHHHHHhccCCCcEEEEec
Confidence 4 45 7776666666666778888843
No 198
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=39.05 E-value=73 Score=27.73 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=26.2
Q ss_pred HhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 108 ~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~ 146 (187)
+..|+||+..| .-||+|...++++. +...+||||+.+
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~-l~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLL-LDNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHH-EES-SSEEEEE-
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHH-hcCCCCCEEEeC
Confidence 44889888875 78999999988763 333489999873
No 199
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=38.84 E-value=1.7e+02 Score=23.93 Aligned_cols=107 Identities=18% Similarity=0.312 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHC-C----CeEEEcCCccc---HHHHHHHHHHhc--CCeEEEEeCcccccccccCCCCceEeecCCHHH
Q 029797 32 DAAIDLAHELVAR-R----LDLVYGGGSIG---LMGLVSKAVHHG--GGNVIGIIPRTLMNKEITGETVGEVRPVADMHQ 101 (187)
Q Consensus 32 ~~A~~lG~~la~~-g----~~lv~GGg~~G---lM~a~~~gA~~~--gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~ 101 (187)
+.|....+.++++ + ...+||+...| |+.|++..+.+. +.+|+-+....+. .+.. +.+..... .
T Consensus 17 ~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~-~~~~-----~~~~~~~~-~ 89 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI-REFA-----DALRDGEI-E 89 (219)
T ss_dssp HHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH-HHHH-----HHHHTTSH-H
T ss_pred HHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH-HHHH-----HHHHcccc-h
Confidence 4566666677664 2 24688864333 788888888764 4455555332221 1110 00000111 1
Q ss_pred HHHHHHHhCCEEEE-----eCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 102 RKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 102 R~~~m~~~sDa~Iv-----lpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
.-.--.+.+|++++ +.|-..|-+|++..+.... .+++++++...
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~ 138 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSD 138 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEES
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeC
Confidence 11122456888776 4565678899999886544 45889887653
No 200
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.64 E-value=2.2e+02 Score=24.66 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=39.3
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCcccHHHHH
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD------------------------------LVYGGGSIGLMGLV 61 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~------------------------------lv~GGg~~GlM~a~ 61 (187)
.+++|+|+.- . .++...+.+.++.++|.++|+. +++=||. |-+=.+
T Consensus 4 ~~~~i~iv~~--~-~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L~a 79 (292)
T PRK03378 4 HFKCIGIVGH--P-RHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNMLGA 79 (292)
T ss_pred cCCEEEEEEe--C-CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHHHH
Confidence 3678999943 2 2456667788888877554432 2233345 777777
Q ss_pred HHHHHhcCCeEEEEeC
Q 029797 62 SKAVHHGGGNVIGIIP 77 (187)
Q Consensus 62 ~~gA~~~gG~viGI~p 77 (187)
++.+...+-.++||-.
T Consensus 80 a~~~~~~~~Pilgin~ 95 (292)
T PRK03378 80 ARVLARYDIKVIGINR 95 (292)
T ss_pred HHHhcCCCCeEEEEEC
Confidence 7776666667888843
No 201
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=38.64 E-value=1e+02 Score=27.51 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=41.9
Q ss_pred HHHHHHhCCEEEEeC--CC----hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 103 KAEMARHSDCFIALP--GG----YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp--GG----~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
-..++..||++|.-. +. -|.-.=+.|+++ .++|||.-+..|.+ +++++- ..|++...+|++++.+
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma------~G~PVI~t~~~g~~--E~v~~~-~~G~lv~~~d~~~la~ 362 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMA------VGIPVVSTLHSGIP--ELVEAD-KSGWLVPENDAQALAQ 362 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCccHHHHHHHh------CCCCEEEeCCCCch--hhhcCC-CceEEeCCCCHHHHHH
Confidence 345678899998532 11 233334666664 38999998876653 222211 1256666678888887
Q ss_pred HHHhh
Q 029797 177 NLRST 181 (187)
Q Consensus 177 ~l~~~ 181 (187)
.|.+.
T Consensus 363 ai~~l 367 (406)
T PRK15427 363 RLAAF 367 (406)
T ss_pred HHHHH
Confidence 77653
No 202
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=38.63 E-value=2.1e+02 Score=25.26 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=10.6
Q ss_pred hCCEEEEeCCCh
Q 029797 109 HSDCFIALPGGY 120 (187)
Q Consensus 109 ~sDa~IvlpGG~ 120 (187)
.+|++|+++||+
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 589999999994
No 203
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.48 E-value=2.6e+02 Score=24.20 Aligned_cols=82 Identities=20% Similarity=0.071 Sum_probs=40.8
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccccccccc-CCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHH
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEIT-GETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLE 124 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~-~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~ 124 (187)
..+|.|+| ++=-++.+-|+..|..++.+........+.. ....+.++...+- .+-..+....|.+|=.-|+..|++
T Consensus 186 ~VlV~G~G--~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~~ 262 (360)
T PLN02586 186 HLGVAGLG--GLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHALG 262 (360)
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHHH
Confidence 45566654 4444466778888888877643321101111 1122223222221 111111223688887778777877
Q ss_pred HHHHHH
Q 029797 125 ELLEVI 130 (187)
Q Consensus 125 El~~a~ 130 (187)
+.+..+
T Consensus 263 ~~~~~l 268 (360)
T PLN02586 263 PLLGLL 268 (360)
T ss_pred HHHHHh
Confidence 776554
No 204
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=38.44 E-value=38 Score=25.89 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=25.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
|++|+||-+|..++.. ..|+.+.+.|...++.+
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceE
Confidence 5688888889888633 56888888888877766
No 205
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=38.31 E-value=1.3e+02 Score=24.51 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.3
Q ss_pred eEEEEcCCCCCC
Q 029797 15 RVCVFCGSSTGK 26 (187)
Q Consensus 15 ~I~Vfggs~~~~ 26 (187)
.|-|-||+|.+.
T Consensus 2 ~ilvtGgaRSGK 13 (175)
T COG2087 2 MILVTGGARSGK 13 (175)
T ss_pred eEEEecCccCCc
Confidence 466777777775
No 206
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=38.05 E-value=2.9e+02 Score=24.60 Aligned_cols=146 Identities=10% Similarity=0.089 Sum_probs=80.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHH---HHHHHHHhcCCe-EEEEeCcc------c-ccc----cc
Q 029797 21 GSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMG---LVSKAVHHGGGN-VIGIIPRT------L-MNK----EI 85 (187)
Q Consensus 21 gs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~---a~~~gA~~~gG~-viGI~p~~------~-~~~----e~ 85 (187)
....-+|+-. +.-.+.+-..|+.|..+| +|..+|. .+-|.|++..|. -++|.... + -|. +.
T Consensus 137 ~g~i~ND~Tl-~~L~~~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~S 212 (322)
T PRK13384 137 NDEVDNDATV-ENLVKQSVTAAKAGADML---APSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDC 212 (322)
T ss_pred CCcCccHHHH-HHHHHHHHHHHHcCCCeE---ecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcC
Confidence 3334444444 444456667789999999 5667775 456777776664 46665311 1 011 11
Q ss_pred cCCCCceEeecC----CHHHHHHH--HHHhCCEEEEeCCCh--hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHH
Q 029797 86 TGETVGEVRPVA----DMHQRKAE--MARHSDCFIALPGGY--GTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALS 157 (187)
Q Consensus 86 ~~~~~~~~~~~~----~m~~R~~~--m~~~sDa~IvlpGG~--GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~ 157 (187)
.+.+-...++-+ ....|... .-+-||.+.|=||.. --+.++-+ ..+.|+..++++|-+ .+++
T Consensus 213 ap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~--------~~~lPvaaYqVSGEY--aMik 282 (322)
T PRK13384 213 ELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPYLDVLSRLRQ--------ETHLPLAAYQVGGEY--AMIK 282 (322)
T ss_pred CCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchHHHHHHHHHh--------ccCCCEEEEEchHHH--HHHH
Confidence 111000111111 01122211 234599999999973 33333322 248999999999997 5556
Q ss_pred hHHhCCCcCCCCCHHHHHHHHHh
Q 029797 158 SLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 158 ~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.-...|.+......-|.+.-+|.
T Consensus 283 aAa~~G~~d~~~~~~Esl~~~kR 305 (322)
T PRK13384 283 FAALAGALDERAVVTETLGGLKR 305 (322)
T ss_pred HHHHcCCccHHHHHHHHHHHHHH
Confidence 66666776665556665555554
No 207
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=38.00 E-value=21 Score=36.11 Aligned_cols=45 Identities=36% Similarity=0.530 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhc-----------CCeEEEEeCcccc
Q 029797 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHG-----------GGNVIGIIPRTLM 81 (187)
Q Consensus 35 ~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~-----------gG~viGI~p~~~~ 81 (187)
-+|++.|..+-+.||.||| |.=+++.-|++.+ ||.+||-.-..++
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLY 884 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALY 884 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhh
Confidence 4578888888899999985 7777777777652 6677766444444
No 208
>PRK06756 flavodoxin; Provisional
Probab=37.96 E-value=54 Score=24.75 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
++|.|+-+|..++.. +.|+.+++.+.+.|+.+
T Consensus 2 mkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 2 SKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred ceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 466666666766432 45677777776666554
No 209
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=37.94 E-value=29 Score=29.88 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHh-CCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHH
Q 029797 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNL 178 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~l-g~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l 178 (187)
..|....++.+|.+|+ +||=-.+.-++.+.+. ..++.|+|++|.+..++...+ .+....+..|++..|
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~-------~~~i~g~~~evL~~l 273 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLL-------TLKVEASCAQALAAL 273 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcce-------eEEEeCCHHHHHHHH
Confidence 4566667788999998 4554444433322211 135779999998755432211 334557888888887
Q ss_pred Hh
Q 029797 179 RS 180 (187)
Q Consensus 179 ~~ 180 (187)
.+
T Consensus 274 ~~ 275 (285)
T PRK05333 274 VA 275 (285)
T ss_pred HH
Confidence 44
No 210
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=37.94 E-value=1.7e+02 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=12.8
Q ss_pred CCEEEEeC-----------CChhhHHHHHHHHH
Q 029797 110 SDCFIALP-----------GGYGTLEELLEVIT 131 (187)
Q Consensus 110 sDa~Ivlp-----------GG~GTL~El~~a~~ 131 (187)
+|++|||+ ....-+++..+.+.
T Consensus 2 aD~ivVlG~~~~~~~~~~~~~~~R~~~a~~L~~ 34 (155)
T PF02698_consen 2 ADAIVVLGSALDPDGQLSPESRERLDEAARLYK 34 (155)
T ss_dssp -SEEEEES-----------S-HHHHHHHHHHHH
T ss_pred CcEEEECCcCccccccccHhHHHHHHHHHHHHh
Confidence 68888888 44555555555553
No 211
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.86 E-value=40 Score=29.69 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=22.1
Q ss_pred CCCeEEEcCCcccHHHHHHHHHHhcCCeE
Q 029797 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNV 72 (187)
Q Consensus 44 ~g~~lv~GGg~~GlM~a~~~gA~~~gG~v 72 (187)
.+..|+||||. |+=.+.+....+.|.++
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 57788888886 88888888888877744
No 212
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.77 E-value=95 Score=25.90 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
++++++++.+-.+|..+|+..+ .+ ..+.+.|.++|..+||+-
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 5677888888888999998875 23 245567778899999984
No 213
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=37.60 E-value=59 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=28.2
Q ss_pred CEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 111 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 111 Da~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
|++|+..| .-||+|-..+++++-- .+||||+..-.
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~--~~kPVVlTGam 136 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLN--TPKPVVLTGAM 136 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhc--CCCCEEEeCCC
Confidence 88888875 7999999999988542 39999997543
No 214
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.58 E-value=2.1e+02 Score=24.47 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=37.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCC---------CeEEEcCCcccHHHHHHHHHHh--cCCeEEEEeC
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARR---------LDLVYGGGSIGLMGLVSKAVHH--GGGNVIGIIP 77 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g---------~~lv~GGg~~GlM~a~~~gA~~--~gG~viGI~p 77 (187)
+|+|+. + . +++..+.+.++-++|.++| ..++.|| . |-+=-+++.+.. .+-.++||-.
T Consensus 2 ~i~Ii~--~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGG-D-GT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 2 KVAIIS--N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGG-D-GTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred EEEEEe--C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECC-c-HHHHHHHHHhcccCCCCeEEEEeC
Confidence 588983 3 2 4666788888988887655 3445565 5 777666665554 4667777743
No 215
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=37.52 E-value=1.2e+02 Score=23.82 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=28.5
Q ss_pred HhCCEEEEeCCC-----hhhHHHHHHHHHHHH-hCCCCCcEEEEcCCCCc-----hHHHHHhHHhC
Q 029797 108 RHSDCFIALPGG-----YGTLEELLEVITWAQ-LGIHDKPVCVANKPKSP-----LMMALSSLLSA 162 (187)
Q Consensus 108 ~~sDa~IvlpGG-----~GTL~El~~a~~~~~-lg~~~kPvill~~~g~~-----l~~~~~~~~~~ 162 (187)
..+|.+|+.+|| ..+.......+.+.. ....++|+++++..-.| ....+..++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~ 127 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSK 127 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhC
Confidence 567888888885 222222111111111 22569999998875522 33445555554
No 216
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=36.92 E-value=1e+02 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=17.0
Q ss_pred eEeecCCHHHHHHHHHHhCCEEEEeCCC
Q 029797 92 EVRPVADMHQRKAEMARHSDCFIALPGG 119 (187)
Q Consensus 92 ~~~~~~~m~~R~~~m~~~sDa~IvlpGG 119 (187)
+-++-+|+..-+-.-.-.||.+|+|-.-
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTdV 235 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTDV 235 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEecc
Confidence 5556667743232223459999999764
No 217
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=36.88 E-value=98 Score=25.78 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=32.6
Q ss_pred ccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 7 IQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 7 ~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
+....+...|+|||||=++...-+...|+.+-+.+...++.+|
T Consensus 15 ~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 15 NSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred cCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 4445666789999999887777788888888887876676544
No 218
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=36.68 E-value=3.3e+02 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.1
Q ss_pred HhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCC
Q 029797 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPK 149 (187)
Q Consensus 108 ~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g 149 (187)
...|++|+.-.-+||-..+..++. ..++|+++++...
T Consensus 62 ~~~d~ii~~~~tf~~~~~~~~~~~-----~~~~Pvll~a~~~ 98 (452)
T cd00578 62 ANCDGLIVWMHTFGPAKMWIAGLS-----ELRKPVLLLATQF 98 (452)
T ss_pred cCCcEEEEcccccccHHHHHHHHH-----hcCCCEEEEeCCC
Confidence 368899998888888777776642 2589999988664
No 219
>PLN02275 transferase, transferring glycosyl groups
Probab=36.54 E-value=1.4e+02 Score=26.06 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCEEEEeC-C--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhC---CCcCCCCCHHHH
Q 029797 101 QRKAEMARHSDCFIALP-G--GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSA---TSLSQHQTLKNL 174 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivlp-G--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~---~~i~~~~t~~e~ 174 (187)
+.-..++..||++|... . +.|--.=+.|+++ .++|||..+..|. ..++.+ |++. ++++++
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~------~eiv~~g~~G~lv--~~~~~l 363 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI------GELVKDGKNGLLF--SSSSEL 363 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh------HHHccCCCCeEEE--CCHHHH
Confidence 44456688999998631 2 2233344667764 4899999876553 233332 4443 368888
Q ss_pred HHHHHh
Q 029797 175 FKNLRS 180 (187)
Q Consensus 175 v~~l~~ 180 (187)
.+.|.+
T Consensus 364 a~~i~~ 369 (371)
T PLN02275 364 ADQLLE 369 (371)
T ss_pred HHHHHH
Confidence 887764
No 220
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.51 E-value=2e+02 Score=22.15 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=53.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe-CcccccccccCCCCc
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII-PRTLMNKEITGETVG 91 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~-p~~~~~~e~~~~~~~ 91 (187)
-++|.|+|-|. ...+.|+..|.++|.++..=-..+- .+.+...++.-.+..+. | .+.+.++-.++..
T Consensus 28 gk~v~VvGrs~--------~vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAtg~~-~~i~~~~ikpGa~ 95 (140)
T cd05212 28 GKKVLVVGRSG--------IVGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGSPKP-EKVPTEWIKPGAT 95 (140)
T ss_pred CCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEecCCC-CccCHHHcCCCCE
Confidence 35899996443 2356778888888888855443321 12223344443333331 2 2333444333211
Q ss_pred eEeec-CCHHHHHHHHHHhCCEEEEeCCChhhHHHHHH
Q 029797 92 EVRPV-ADMHQRKAEMARHSDCFIALPGGYGTLEELLE 128 (187)
Q Consensus 92 ~~~~~-~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~ 128 (187)
++-+ .++ +.-....+.+.++.=.|||+|-+.=...
T Consensus 96 -Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a~L 131 (140)
T cd05212 96 -VINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVAMR 131 (140)
T ss_pred -EEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHHHH
Confidence 1111 111 1123445568889999999998765443
No 221
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.45 E-value=2.3e+02 Score=22.99 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=25.0
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
++-...|++|+.|......+++...+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444568999998876655555543331 34789998874
No 222
>PRK05723 flavodoxin; Provisional
Probab=36.42 E-value=41 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
+|.|+-+|..++.+ +.|+++.+.+.+.|+.+.
T Consensus 2 ~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 2 KVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred eEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 67888788888643 568889998888888763
No 223
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=36.16 E-value=4.3e+02 Score=25.94 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=87.8
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEE-eCccccccccc-------
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI-IPRTLMNKEIT------- 86 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI-~p~~~~~~e~~------- 86 (187)
.|+++|-+.. |+-.+..+.+++.+.+|||.+|+-|+ +.|.... ..+..|++.-= .|..+..-.+.
T Consensus 502 Iia~vgC~ny---p~g~k~v~~iaeefl~RnyiVvttGC--~Am~igm--ykDedGkTlYEkypg~Fd~ggLvntGsCvS 574 (772)
T COG1152 502 IIAVIGCPNY---PAGTKDVYKIAEEFLKRNYIVVTTGC--IAMDIGM--YKDEDGKTLYEKYPGNFDAGGLVNTGSCVS 574 (772)
T ss_pred EEEEecCCCC---CcchhhHHHHHHHHHHcCeEEEecch--hhhhccc--eecccCceehhcCCCccccCceeeccchhh
Confidence 5666654332 34456778888999999999998875 4554322 23344443322 22222111000
Q ss_pred -----------CCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhC--CCCCcEEEEcCCCCchH
Q 029797 87 -----------GETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLG--IHDKPVCVANKPKSPLM 153 (187)
Q Consensus 87 -----------~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg--~~~kPvill~~~g~~l~ 153 (187)
.+-+....+..++.+=...+++.--|+.+.+| +.++-..+++ .| ..+.|+|+ +.+|-.+.
T Consensus 575 naHi~GAaIKva~IFak~plrGn~~EIADYiLNRVGAcgvAWG---aySqkaasia---tG~nr~GIPvVl-GPhg~kyr 647 (772)
T COG1152 575 NAHIAGAAIKVANIFAKRPLRGNFAEIADYILNRVGACGVAWG---AYSQKAASIA---TGCNRWGIPVVL-GPHGSKYR 647 (772)
T ss_pred hhhhhhhHHHHHHHhcCCCcCCcHHHHHHHHHhcCceeEEeeh---hhhHHHHHHh---cCccccCCceEE-CCCchHhh
Confidence 11111222334666667777777888888776 7787776653 45 34899865 77766332
Q ss_pred H-HHHhH-------HhC--C-----------CcCCCCCHHHHHHHHHhhcc
Q 029797 154 M-ALSSL-------LSA--T-----------SLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 154 ~-~~~~~-------~~~--~-----------~i~~~~t~~e~v~~l~~~~~ 183 (187)
. ++.+- .+. | ++..++|.+|++=.+.+.|+
T Consensus 648 ra~i~k~~~~kwkV~Dartge~~~iepaPe~Ll~aae~~~Ea~~~~aklCi 698 (772)
T COG1152 648 RALIGKDYEEKWKVYDARTGEEVKIEPAPEHLLVAAETWEEAIPMMAKLCI 698 (772)
T ss_pred hhhhcCCccccceeeecccccccccCCCCceeEEeeccHHHHhhHHHHHhc
Confidence 2 22222 111 1 12234899999999998886
No 224
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=36.13 E-value=1.1e+02 Score=26.89 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=61.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCce
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGE 92 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~ 92 (187)
|++|.+-||..-+. .--|..++++|.++||.+.+=|...|+-... .-+.|=....+.+..+ .+ ......
T Consensus 1 ~~~i~~~~GGTGGH----i~Pala~a~~l~~~g~~v~~vg~~~~~e~~l---~~~~g~~~~~~~~~~l-~~---~~~~~~ 69 (352)
T PRK12446 1 MKKIVFTGGGSAGH----VTPNLAIIPYLKEDNWDISYIGSHQGIEKTI---IEKENIPYYSISSGKL-RR---YFDLKN 69 (352)
T ss_pred CCeEEEEcCCcHHH----HHHHHHHHHHHHhCCCEEEEEECCCcccccc---CcccCCcEEEEeccCc-CC---CchHHH
Confidence 46788888877663 2356778888888899997777665653221 1112221122211110 00 000000
Q ss_pred Ee-----ecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc
Q 029797 93 VR-----PVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP 151 (187)
Q Consensus 93 ~~-----~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~ 151 (187)
+. ....+..++.+--..-|++|.++|-+.-.- ++.++ ..++|+++...+-.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~-~~aa~------~~~~p~~i~e~n~~~ 126 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPV-VIGGW------LNRVPVLLHESDMTP 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHH-HHHHH------HcCCCEEEECCCCCc
Confidence 00 001113333333444888888666654322 22222 248999999887663
No 225
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=35.96 E-value=39 Score=30.51 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=19.3
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcc
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~ 79 (187)
.||.|||+.|++.|++ |.++|-+|+=|-+..
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEECCc
Confidence 4789999988886653 556688888775443
No 226
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=35.94 E-value=2.3e+02 Score=22.79 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 102 RKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 102 R~~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
...-++..||++|... .|.|+- +.|++. .++|+|.-+..+.. +++++.. .|++...++++++.+.|.
T Consensus 271 ~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~------~G~pvI~~~~~~~~--~~~~~~~-~g~~~~~~~~~~l~~~i~ 339 (377)
T cd03798 271 EVPAYYAAADVFVLPSLREGFGLV--LLEAMA------CGLPVVATDVGGIP--EIITDGE-NGLLVPPGDPEALAEAIL 339 (377)
T ss_pred HHHHHHHhcCeeecchhhccCChH--HHHHHh------cCCCEEEecCCChH--HHhcCCc-ceeEECCCCHHHHHHHHH
Confidence 3456677799877553 233322 555553 48999887655432 2222211 134555678888777776
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
+
T Consensus 340 ~ 340 (377)
T cd03798 340 R 340 (377)
T ss_pred H
Confidence 5
No 227
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=35.89 E-value=75 Score=27.27 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=37.4
Q ss_pred CChhhHHHHHHHHHHHHhC--CCCCcEEEEcC-CCCc--hHHHHHhHHhC----C-CcCCCCCHHHHHHHHHhhcccc
Q 029797 118 GGYGTLEELLEVITWAQLG--IHDKPVCVANK-PKSP--LMMALSSLLSA----T-SLSQHQTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 118 GG~GTL~El~~a~~~~~lg--~~~kPvill~~-~g~~--l~~~~~~~~~~----~-~i~~~~t~~e~v~~l~~~~~~~ 185 (187)
|..=+.+++.+.....+.. ..++.|+++.. +... ....+-+.++. . ++-.+++++.++..|+|+|.+.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 3444567777776654443 23667777665 3331 11111222222 1 2223478999999999999753
No 228
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=35.72 E-value=55 Score=27.73 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
+|+|++|......+.-...++.+-+.|.+.||.++.-.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~ 38 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVD 38 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEe
Confidence 35665555433333224688999999999999874443
No 229
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.44 E-value=2.3e+02 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=20.0
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
...++.| |. |.+-.+++.....+-.++||-
T Consensus 59 d~vi~~G-GD-GT~l~~~~~~~~~~~pv~gin 88 (305)
T PRK02645 59 DLAIVLG-GD-GTVLAAARHLAPHDIPILSVN 88 (305)
T ss_pred CEEEEEC-Cc-HHHHHHHHHhccCCCCEEEEe
Confidence 4445555 45 888888887776666666664
No 230
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=35.00 E-value=46 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=17.4
Q ss_pred EEcCCCCCCChHHHHHHHHHHHHHHH
Q 029797 18 VFCGSSTGKRNCYSDAAIDLAHELVA 43 (187)
Q Consensus 18 Vfggs~~~~~~~~~~~A~~lG~~la~ 43 (187)
=||||...+.+.+.+.++++.++..+
T Consensus 5 K~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 5 KFGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred EECchhcCCHHHHHHHHHHHHHHHHC
Confidence 38999987555566667777666543
No 231
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=34.93 E-value=64 Score=28.14 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
++|+|++|......+.-.+.|+.+.+.|.+.+|.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 467777776666667677899999999988899885
No 232
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=34.92 E-value=1.2e+02 Score=25.86 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=37.5
Q ss_pred HhCCEEEEeCCCh----hhHHHHH-----HHHHHHHhCCCCCcEEEEcCCCC-----chHHHHHhHHhCCC----cCC--
Q 029797 108 RHSDCFIALPGGY----GTLEELL-----EVITWAQLGIHDKPVCVANKPKS-----PLMMALSSLLSATS----LSQ-- 167 (187)
Q Consensus 108 ~~sDa~IvlpGG~----GTL~El~-----~a~~~~~lg~~~kPvill~~~g~-----~l~~~~~~~~~~~~----i~~-- 167 (187)
...|++|||++|. |+++..+ .++.+-+. ...+.+++..+.. +...+-+.+++.|. |..
T Consensus 43 p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~--gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~ 120 (239)
T PRK10834 43 PYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNS--GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY 120 (239)
T ss_pred CCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHh--CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC
Confidence 3478999999763 5555443 44443332 3455566655422 23334455665542 222
Q ss_pred --CCCHHHHHHHH
Q 029797 168 --HQTLKNLFKNL 178 (187)
Q Consensus 168 --~~t~~e~v~~l 178 (187)
.+|.|+++..-
T Consensus 121 ~s~nT~en~~~a~ 133 (239)
T PRK10834 121 AGFRTLDSIVRTR 133 (239)
T ss_pred CCCCHHHHHHHHH
Confidence 38888887543
No 233
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=34.78 E-value=1.4e+02 Score=26.72 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=11.2
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 87 ~~~D~IiaiGGGS 99 (383)
T PRK09860 87 NNCDSVISLGGGS 99 (383)
T ss_pred cCCCEEEEeCCch
Confidence 4699999999984
No 234
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.35 E-value=1.1e+02 Score=25.69 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=22.8
Q ss_pred eEEEcCCcccHHHHHHHHHHhcC-CeEEEEeCc
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIPR 78 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~g-G~viGI~p~ 78 (187)
.+|.-||. |-...+.++..... ...+||+|.
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcC
Confidence 45555556 99999999987643 357999984
No 235
>PLN02512 acetylglutamate kinase
Probab=34.26 E-value=66 Score=28.00 Aligned_cols=46 Identities=26% Similarity=0.237 Sum_probs=30.2
Q ss_pred ccCCCCcceEEEEcCCCCCCChHH-HHHHHHHHHHHHHCC--CeEEEcCCc
Q 029797 7 IQKNSRFKRVCVFCGSSTGKRNCY-SDAAIDLAHELVARR--LDLVYGGGS 54 (187)
Q Consensus 7 ~~~~~~~~~I~Vfggs~~~~~~~~-~~~A~~lG~~la~~g--~~lv~GGg~ 54 (187)
++.++....|--+|||... +++. .....++. .|.+.| ..||.|||+
T Consensus 42 i~~~~~~tiVIKlGGs~i~-d~~~~~~~~~di~-~l~~~g~~iVlVHGgG~ 90 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMK-DPELKAGVIRDLV-LLSCVGLRPVLVHGGGP 90 (309)
T ss_pred HHHHCCCeEEEEECCeecc-ChhHHHHHHHHHH-HHHHCCCCEEEEECCcH
Confidence 4556666677778888764 4433 34566666 566665 467999987
No 236
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=34.06 E-value=2.9e+02 Score=23.33 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc-----hHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 105 EMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP-----LMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 105 ~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~-----l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
++.+..|-+|+++ +=+||.+-...+.... .+.+|.+++..... +......|+++|. |++|+++
T Consensus 75 ~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~----~~~~i~ViDS~~~s~g~g~lv~~a~~l~~~G~-----s~~ei~~ 145 (280)
T PF02645_consen 75 LLEEGYDEIIVITISSGLSGTYNSARLAAKML----PDIKIHVIDSKSVSAGQGLLVLEAAKLIEQGK-----SFEEIVE 145 (280)
T ss_dssp HHHTTTSEEEEEES-TTT-THHHHHHHHHHHH----TTTEEEEEE-SS-HHHHHHHHHHHHHHHHTT-------HHHHHH
T ss_pred HHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc----CcCEEEEEeCCCcchhhhHHHHHHHHHHHcCC-----CHHHHHH
Confidence 4556678676664 4479999988887653 57889999887662 2334445666665 8888888
Q ss_pred HHHhh
Q 029797 177 NLRST 181 (187)
Q Consensus 177 ~l~~~ 181 (187)
++++.
T Consensus 146 ~l~~~ 150 (280)
T PF02645_consen 146 KLEEL 150 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87753
No 237
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=33.97 E-value=53 Score=27.89 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=13.5
Q ss_pred EEEcCCcccHHHHHHHHHHhcCCeEE
Q 029797 48 LVYGGGSIGLMGLVSKAVHHGGGNVI 73 (187)
Q Consensus 48 lv~GGg~~GlM~a~~~gA~~~gG~vi 73 (187)
++|||+. |+=-+.++...+.|-+||
T Consensus 9 LITGG~s-GIGl~lak~f~elgN~VI 33 (245)
T COG3967 9 LITGGAS-GIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEeCCcc-hhhHHHHHHHHHhCCEEE
Confidence 3555543 555555555555555544
No 238
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=33.78 E-value=92 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
+|+|.+|......+.-...++++.+.|.+.||.+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~ 35 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEV 35 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeE
Confidence 5666555554455655689999999999999876
No 239
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=33.63 E-value=2.1e+02 Score=25.45 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCEEEEe-CC--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHH
Q 029797 100 HQRKAEMARHSDCFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFK 176 (187)
Q Consensus 100 ~~R~~~m~~~sDa~Ivl-pG--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~ 176 (187)
.+....++..||++|.+ +. |.|--.-+.|+++ .++|||..+..|.+ +.+++- ..|++. +|++++.+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~~~--eiv~~~-~~G~lv--~d~~~la~ 373 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKCID--ELVKHG-ENGLVF--GDSEELAE 373 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCCHH--HHhcCC-CCEEEE--CCHHHHHH
Confidence 34445578899999853 22 2333334666664 48999987765432 222211 124432 47777777
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|.+
T Consensus 374 ~i~~ 377 (415)
T cd03816 374 QLID 377 (415)
T ss_pred HHHH
Confidence 6654
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=33.59 E-value=1e+02 Score=27.24 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCEEEEeCCChh---hHHHHHHHHHHHHhC--CCCCcEEEEcCCCCchHHHHHhHH---hC-----CCcC
Q 029797 100 HQRKAEMARHSDCFIALPGGYG---TLEELLEVITWAQLG--IHDKPVCVANKPKSPLMMALSSLL---SA-----TSLS 166 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~G---TL~El~~a~~~~~lg--~~~kPvill~~~g~~l~~~~~~~~---~~-----~~i~ 166 (187)
+-|+..--.+-|...+.|-+.+ +.+++-+.....+.. ..+..|+++.....=-.+....|+ +. =++-
T Consensus 64 sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL 143 (334)
T PRK07993 64 GCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFL 143 (334)
T ss_pred HHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 3444444566788777775432 478888777665544 236777777554331111222222 22 1333
Q ss_pred CCCCHHHHHHHHHhhcccc
Q 029797 167 QHQTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 167 ~~~t~~e~v~~l~~~~~~~ 185 (187)
.++.++.++.-|+|+|...
T Consensus 144 ~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 144 ACREPARLLATLRSRCRLH 162 (334)
T ss_pred EECChhhChHHHHhccccc
Confidence 4689999999999999754
No 241
>CHL00175 minD septum-site determining protein; Validated
Probab=33.58 E-value=1e+02 Score=25.76 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=30.1
Q ss_pred ccccccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 3 MEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 3 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
-|.|+++.+..+.|+|. |...+...- ..|..|+..|++.|..+
T Consensus 5 ~~~~~~~~~~~~vi~v~-s~KGGvGKT--t~a~nLA~~La~~g~~v 47 (281)
T CHL00175 5 TEDKEKSATMSRIIVIT-SGKGGVGKT--TTTANLGMSIARLGYRV 47 (281)
T ss_pred chhhhhcCCCceEEEEE-cCCCCCcHH--HHHHHHHHHHHhCCCeE
Confidence 36677777777778877 445554443 46888999999988644
No 242
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=33.50 E-value=34 Score=28.59 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=29.0
Q ss_pred HHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 104 ~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
.-+++.||++|.+.+.+| +||+ .++|||++++..-|
T Consensus 194 ~~Ll~~s~~VvtinStvG-----lEAl------l~gkpVi~~G~~~Y 229 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVG-----LEAL------LHGKPVIVFGRAFY 229 (269)
T ss_pred HHHHHhCCEEEEECCHHH-----HHHH------HcCCceEEecCccc
Confidence 467899999999999987 3444 35999999987766
No 243
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=33.46 E-value=77 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
+|+|.+|+.......-.+.++++-+.|.+.|+.++.
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 677776665444343346789999999999998743
No 244
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=33.34 E-value=1.1e+02 Score=25.65 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHC----CCe-EEE--cC-CcccHHHHHHHHHHhcC
Q 029797 31 SDAAIDLAHELVAR----RLD-LVY--GG-GSIGLMGLVSKAVHHGG 69 (187)
Q Consensus 31 ~~~A~~lG~~la~~----g~~-lv~--GG-g~~GlM~a~~~gA~~~g 69 (187)
.+.|+.+|+.||++ |+. |++ || -+.|-++|.+++|.++|
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 46789999999873 543 333 22 23799999999999987
No 245
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=33.28 E-value=2.9e+02 Score=23.13 Aligned_cols=97 Identities=27% Similarity=0.266 Sum_probs=41.9
Q ss_pred EEEcCCc--ccHHHHHHHHHHhcC-CeEEEEeCcccccccccCCCCceEeec-CCH--HHHHHHHHHhCCEEEEeCCChh
Q 029797 48 LVYGGGS--IGLMGLVSKAVHHGG-GNVIGIIPRTLMNKEITGETVGEVRPV-ADM--HQRKAEMARHSDCFIALPGGYG 121 (187)
Q Consensus 48 lv~GGg~--~GlM~a~~~gA~~~g-G~viGI~p~~~~~~e~~~~~~~~~~~~-~~m--~~R~~~m~~~sDa~IvlpGG~G 121 (187)
+|.||+. .|..--++++|+..| |.|.-+.|....+. . .....++... -.. ...-....+.+|++++=||= |
T Consensus 2 lvigGS~~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~-~-~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPGl-g 78 (242)
T PF01256_consen 2 LVIGGSEGYPGAAILAARAALRSGAGLVTLATPESIAPV-I-ASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPGL-G 78 (242)
T ss_dssp EEEE-BTSSHHHHHHHHHHHHHTT-SEEEEEECGCCHHH-H-HHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--S
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHH-H-HhCCceeEEecccchhhhhhHhhhccCCEEEeecCC-C
Confidence 4567743 344444566677766 66666666543211 0 0001122211 111 11233446778999888872 3
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 122 TLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 122 TL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
+-++..+.+.. +-..++| ++++-|+.
T Consensus 79 ~~~~~~~~~~~--~~~~~~p-~VlDADaL 104 (242)
T PF01256_consen 79 RDEETEELLEE--LLESDKP-LVLDADAL 104 (242)
T ss_dssp SSHHHHHHHHH--HHHHCST-EEEECHHH
T ss_pred CchhhHHHHHH--HHhhcce-EEEehHHH
Confidence 33332222211 1123678 45555544
No 246
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.26 E-value=2.4e+02 Score=22.09 Aligned_cols=30 Identities=23% Similarity=0.090 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 51 (187)
++|.|.|+++. ....+++.++++|+.++.-
T Consensus 6 ~~ilItGasg~--------iG~~l~~~l~~~g~~v~~~ 35 (246)
T PRK05653 6 KTALVTGASRG--------IGRAIALRLAADGAKVVIY 35 (246)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEE
Confidence 37889987542 3466777777889886433
No 247
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=33.10 E-value=73 Score=27.69 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
++|+|..|+.....+.-.+.|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 367777666655556666899999999988899874
No 248
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.99 E-value=1.3e+02 Score=23.11 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 35 ~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
.-+...|..+|+.+++-|- .=-.+...+.|.+.+-.+||++
T Consensus 19 ~iv~~~l~~~GfeVi~LG~-~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGV-LSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEe
Confidence 4456666778999999985 4788999999999999999994
No 249
>PRK10125 putative glycosyl transferase; Provisional
Probab=32.95 E-value=71 Score=28.60 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=39.7
Q ss_pred HHHHHHhCCEEEEeCCCh-hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHH
Q 029797 103 KAEMARHSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKN 177 (187)
Q Consensus 103 ~~~m~~~sDa~IvlpGG~-GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~ 177 (187)
...+...||++|. |--. |--.=+.||++ .++|||..+..|.+ +..++ ..|++-...|++++.+.
T Consensus 300 l~~~y~~aDvfV~-pS~~Egfp~vilEAmA------~G~PVVat~~gG~~--Eiv~~--~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 300 LMSALNQMDALVF-SSRVDNYPLILCEALS------IGVPVIATHSDAAR--EVLQK--SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHhCCEEEE-CCccccCcCHHHHHHH------cCCCEEEeCCCChH--HhEeC--CcEEEECCCCHHHHHhc
Confidence 3445777999874 4321 22222556654 48999999988753 44443 24777777777777654
No 250
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=32.83 E-value=1.9e+02 Score=25.20 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCE-EEEeCCC---hhhHHHHHHHHHHHHhCC----CCCcEEEEcCCCC------chHHHHHhHHhCCCcCCCCCHHHHH
Q 029797 110 SDC-FIALPGG---YGTLEELLEVITWAQLGI----HDKPVCVANKPKS------PLMMALSSLLSATSLSQHQTLKNLF 175 (187)
Q Consensus 110 sDa-~IvlpGG---~GTL~El~~a~~~~~lg~----~~kPvill~~~g~------~l~~~~~~~~~~~~i~~~~t~~e~v 175 (187)
.|. +|+++.| +|..+-|..++. +-|. ..+.+++++.+|- .+..+...+....--....|..|++
T Consensus 24 ~d~~iv~~GAGsAg~gia~ll~~~~~--~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 24 SDQRILFLGAGSAGIGIADLIVSAMV--REGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred hhcEEEEECcCHHHHHHHHHHHHHHH--HcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 354 4555555 688888877663 3353 2478889988886 1444444455432112457999999
Q ss_pred HHHHhhccc
Q 029797 176 KNLRSTCLC 184 (187)
Q Consensus 176 ~~l~~~~~~ 184 (187)
+.++-++|+
T Consensus 102 ~~v~ptvlI 110 (279)
T cd05312 102 KAVKPTVLI 110 (279)
T ss_pred HhcCCCEEE
Confidence 999988875
No 251
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.68 E-value=98 Score=25.86 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=31.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCe
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGN 71 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~ 71 (187)
|++++|+|-...+ .-|++.+++.||.++.|+.+ -.++....+.+-+..
T Consensus 1 m~~~~i~GtGniG---------~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~~~ 48 (211)
T COG2085 1 MMIIAIIGTGNIG---------SALALRLAKAGHEVIIGSSR--GPKALAAAAAALGPL 48 (211)
T ss_pred CcEEEEeccChHH---------HHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhccc
Confidence 5678888765544 45778888899999999744 444444444444433
No 252
>PRK00654 glgA glycogen synthase; Provisional
Probab=32.67 E-value=3.8e+02 Score=24.23 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHHHhCCEEEEe--CCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhH-----HhCCCcCCCCCHHHHHH
Q 029797 104 AEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSL-----LSATSLSQHQTLKNLFK 176 (187)
Q Consensus 104 ~~m~~~sDa~Ivl--pGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~-----~~~~~i~~~~t~~e~v~ 176 (187)
..+...||++|.- .-|.|.. +.|+++ .++|+|+.+..|.+ +.+.+. -..|++-..+|++++.+
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~--~lEAma------~G~p~V~~~~gG~~--e~v~~~~~~~~~~~G~lv~~~d~~~la~ 420 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLT--QLYALR------YGTLPIVRRTGGLA--DTVIDYNPEDGEATGFVFDDFNAEDLLR 420 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHH--HHHHHH------CCCCEEEeCCCCcc--ceeecCCCCCCCCceEEeCCCCHHHHHH
Confidence 3567889998763 2455633 444442 47888888776652 111111 13356555677777766
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
.|..
T Consensus 421 ~i~~ 424 (466)
T PRK00654 421 ALRR 424 (466)
T ss_pred HHHH
Confidence 6643
No 253
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.67 E-value=1.9e+02 Score=23.17 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCcccH
Q 029797 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGL 57 (187)
Q Consensus 28 ~~~~~~A~~lG~~la~~g~~lv~GGg~~Gl 57 (187)
+...+.+..+.+.+.+.+...++|-|..+.
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 345555555666665668888999876544
No 254
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=32.58 E-value=2e+02 Score=24.77 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=35.8
Q ss_pred EeecCCH-HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC-CCCchHHHHHhHHhCCCc-CCCC
Q 029797 93 VRPVADM-HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK-PKSPLMMALSSLLSATSL-SQHQ 169 (187)
Q Consensus 93 ~~~~~~m-~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~-~g~~l~~~~~~~~~~~~i-~~~~ 169 (187)
+.+...+ ..+...++..||++|. +.| +. +.|++. .++|+|.... .+.+ + +.+.+.. ....
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~~--e----~~~~g~~~lv~~ 319 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTERP--E----TVEAGTNKLVGT 319 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCCh--H----HHhcCceEEeCC
Confidence 4444433 3344456777887754 443 22 345553 3899998643 3343 1 2222211 1135
Q ss_pred CHHHHHHHHHh
Q 029797 170 TLKNLFKNLRS 180 (187)
Q Consensus 170 t~~e~v~~l~~ 180 (187)
+++++.+.+.+
T Consensus 320 d~~~i~~ai~~ 330 (365)
T TIGR00236 320 DKENITKAAKR 330 (365)
T ss_pred CHHHHHHHHHH
Confidence 67777666643
No 255
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.37 E-value=1e+02 Score=25.94 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 104 ~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
..+...||++|.-. .|.|.. +.|+++ .++|+|..+..|.+ +.+++- ..|++...++++++.+.+..
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~~~--e~i~~~-~~G~~~~~~~~~~l~~~i~~ 332 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGGIP--EVVKHG-ETGFLVDVGDVEAMAEYALS 332 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCCch--hhhcCC-CceEEcCCCCHHHHHHHHHH
Confidence 35577899987543 334422 556653 48999997765542 222211 12455455677777666643
No 256
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=32.36 E-value=3.8e+02 Score=24.52 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=47.6
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHH
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEE 125 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~E 125 (187)
..+|.|.|+-|.. +++.++..|.+|+.+-.+.....+.....+ .+.++. . .+..+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 3457787765544 556677778888887332211111111111 112342 2 35789999999998888774
Q ss_pred -HHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 126 -LLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 126 -l~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
.+..+ +.-.+++|...+
T Consensus 267 ~~~~~m--------K~GailiN~G~~ 284 (406)
T TIGR00936 267 EHFENM--------KDGAIVANIGHF 284 (406)
T ss_pred HHHhcC--------CCCcEEEEECCC
Confidence 44322 222455565555
No 257
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.30 E-value=1.1e+02 Score=21.86 Aligned_cols=43 Identities=14% Similarity=-0.002 Sum_probs=25.7
Q ss_pred CCCcEEEEcCCCC-chHHHHHhHHhCCCcCC----CCCHHHHHHHHHh
Q 029797 138 HDKPVCVANKPKS-PLMMALSSLLSATSLSQ----HQTLKNLFKNLRS 180 (187)
Q Consensus 138 ~~kPvill~~~g~-~l~~~~~~~~~~~~i~~----~~t~~e~v~~l~~ 180 (187)
+++|++++.++.- .-.+..+.|...|+-.. ..+.+-+.++|++
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 5799998877765 44667777766664322 1455556666655
No 258
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.22 E-value=79 Score=31.61 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHhhcccc
Q 029797 167 QHQTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 167 ~~~t~~e~v~~l~~~~~~~ 185 (187)
..+.++.++..|+|+|.+.
T Consensus 156 ~tt~~~kLl~TIrSRc~~v 174 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHY 174 (824)
T ss_pred EeCChhhhhHHHHhheeEE
Confidence 3477888889999999753
No 259
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.20 E-value=2.7e+02 Score=22.66 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=38.8
Q ss_pred EEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCC-ChhhHHHHH
Q 029797 49 VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPG-GYGTLEELL 127 (187)
Q Consensus 49 v~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpG-G~GTL~El~ 127 (187)
+++.|..--+-.+++-|++.|.++|+|+... .+++ ..+...+|..|.+|- ..+-.+|+-
T Consensus 116 iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~-------~s~l-------------~~l~~~~D~~i~ip~~~~~~v~e~h 175 (196)
T PRK10886 116 ISTRGNSRDIVKAVEAAVTRDMTIVALTGYD-------GGEL-------------AGLLGPQDVEIRIPSHRSARIQEMH 175 (196)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC-------CChh-------------hhccccCCEEEEcCCCchHHHHHHH
Confidence 5666666677788888999999999996432 1111 111224788888886 356666655
Q ss_pred HH
Q 029797 128 EV 129 (187)
Q Consensus 128 ~a 129 (187)
..
T Consensus 176 ~~ 177 (196)
T PRK10886 176 ML 177 (196)
T ss_pred HH
Confidence 43
No 260
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=32.12 E-value=1.3e+02 Score=24.30 Aligned_cols=23 Identities=4% Similarity=0.004 Sum_probs=11.1
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEE
Q 029797 27 RNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 27 ~~~~~~~A~~lG~~la~~g~~lv 49 (187)
++-+.+....+-+.+.++|+.++
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~ 33 (275)
T cd06320 11 NEFWRSLKEGYENEAKKLGVSVD 33 (275)
T ss_pred CHHHHHHHHHHHHHHHHhCCeEE
Confidence 34443444445555555565553
No 261
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.12 E-value=80 Score=28.68 Aligned_cols=73 Identities=18% Similarity=0.129 Sum_probs=49.0
Q ss_pred HhCCEEEEeCCChhhHHHHHHHHHHHHh----CCCCCcEEEEc---CCCC--c-hHHHHHhHHhCCCc--CC--------
Q 029797 108 RHSDCFIALPGGYGTLEELLEVITWAQL----GIHDKPVCVAN---KPKS--P-LMMALSSLLSATSL--SQ-------- 167 (187)
Q Consensus 108 ~~sDa~IvlpGG~GTL~El~~a~~~~~l----g~~~kPvill~---~~g~--~-l~~~~~~~~~~~~i--~~-------- 167 (187)
+.+|++|+.|=-.+|+.-+..-++-.-+ -..++|+++.- ..-| + ..+.++.|.+.|.. .+
T Consensus 81 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~ 160 (399)
T PRK05579 81 KWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACG 160 (399)
T ss_pred cccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCC
Confidence 3699999999999999988753322111 12489999875 4444 2 46677777776533 22
Q ss_pred ------CCCHHHHHHHHHh
Q 029797 168 ------HQTLKNLFKNLRS 180 (187)
Q Consensus 168 ------~~t~~e~v~~l~~ 180 (187)
-.+|+++++.+.+
T Consensus 161 ~~g~gr~~~~~~I~~~~~~ 179 (399)
T PRK05579 161 DVGPGRMAEPEEIVAAAER 179 (399)
T ss_pred CcCCCCCCCHHHHHHHHHH
Confidence 1789999888764
No 262
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.95 E-value=2.9e+02 Score=23.95 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=34.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCcccHHHHHH
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD------------------------------LVYGGGSIGLMGLVS 62 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~------------------------------lv~GGg~~GlM~a~~ 62 (187)
+++|+||.-.. .+...+.++++.++|.++|+. +++-||. |.+-.++
T Consensus 4 ~~~v~iv~~~~---k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~~ 79 (295)
T PRK01231 4 FRNIGLIGRLG---SSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLLGAA 79 (295)
T ss_pred CCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHHHHH
Confidence 55799984322 244456666776666544322 3333445 7555555
Q ss_pred HHHHhcCCeEEEEeC
Q 029797 63 KAVHHGGGNVIGIIP 77 (187)
Q Consensus 63 ~gA~~~gG~viGI~p 77 (187)
+.+...+-.++||-.
T Consensus 80 ~~~~~~~~Pvlgin~ 94 (295)
T PRK01231 80 RALARHNVPVLGINR 94 (295)
T ss_pred HHhcCCCCCEEEEeC
Confidence 555555667888754
No 263
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.84 E-value=1.1e+02 Score=24.52 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 104 ~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
..+-...|++|+.|--...+.++.+-+. ..+.||++++.+
T Consensus 50 ~~i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 50 QAISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHHHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 3345569999999988766666665543 247999999887
No 264
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=31.57 E-value=70 Score=27.64 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
-++..||++++|+-..=+++-...+. +....++||.|+|..--
T Consensus 242 ~~v~e~dg~LvlGsSL~v~Sg~r~i~---~a~~~k~pi~IvNIGpT 284 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSLMVLSGFRFIR---HAHEKKKPIAIVNIGPT 284 (305)
T ss_pred HHHhccCceEEechhHHHHHHHHHHH---HHHhhcCcEEEEecCCc
Confidence 45778999999987777666655443 22345899999998643
No 265
>PRK06703 flavodoxin; Provisional
Probab=31.55 E-value=62 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
++|.|+-+|..++.. +.|+.+++.|.+.|+.+
T Consensus 2 mkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 2 AKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 455565566666432 56788888777666654
No 266
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=31.46 E-value=4e+02 Score=24.16 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHC-----CCeEEEcCCccc---HHHHHHHHHHhc--CCeEEEEeCcccccccccCCCCceEeecCCH-H
Q 029797 32 DAAIDLAHELVAR-----RLDLVYGGGSIG---LMGLVSKAVHHG--GGNVIGIIPRTLMNKEITGETVGEVRPVADM-H 100 (187)
Q Consensus 32 ~~A~~lG~~la~~-----g~~lv~GGg~~G---lM~a~~~gA~~~--gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m-~ 100 (187)
+.|+..++.++++ +..++||....| ++.+++..+.+. +..++-+....+. .+... .+....+ .
T Consensus 131 ~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-~~~~~-----~~~~~~~~~ 204 (450)
T PRK00149 131 RLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-NDFVN-----ALRNNTMEE 204 (450)
T ss_pred HHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHH-----HHHcCcHHH
Confidence 3466666666653 335678864333 888888888876 4455555332221 11100 0000111 1
Q ss_pred HHHHHHHHhCCEEEE-----eCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHHhHHhC---CCc-C-CCC
Q 029797 101 QRKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALSSLLSA---TSL-S-QHQ 169 (187)
Q Consensus 101 ~R~~~m~~~sDa~Iv-----lpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~~~~~~---~~i-~-~~~ 169 (187)
.++ .....|.+++ +.|.-.|.+|++..+...+ ..++++++...... .+..+-+.+..+ |.. . ..-
T Consensus 205 ~~~--~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~p 280 (450)
T PRK00149 205 FKE--KYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPP 280 (450)
T ss_pred HHH--HHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCC
Confidence 111 2235665543 3455568888888775433 34677776543322 122222333322 221 1 125
Q ss_pred CHHHHHHHHHhhc
Q 029797 170 TLKNLFKNLRSTC 182 (187)
Q Consensus 170 t~~e~v~~l~~~~ 182 (187)
|.++..+.|++.|
T Consensus 281 d~~~r~~il~~~~ 293 (450)
T PRK00149 281 DLETRIAILKKKA 293 (450)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666666554
No 267
>PRK00625 shikimate kinase; Provisional
Probab=31.44 E-value=1.6e+02 Score=23.32 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCc--ccccccccCCCCc----e-EeecCCHHHHHHHHHHhC
Q 029797 38 AHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR--TLMNKEITGETVG----E-VRPVADMHQRKAEMARHS 110 (187)
Q Consensus 38 G~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~--~~~~~e~~~~~~~----~-~~~~~~m~~R~~~m~~~s 110 (187)
-+.+...+..+.+|||. ++..-+...+..+|.|+-+-.+ .... .....++. . ..+..-+..|....-+.|
T Consensus 67 l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~-Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~a 143 (173)
T PRK00625 67 LTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQ-RLQKRGLPERLKHAPSLEEILSQRIDRMRSIA 143 (173)
T ss_pred HHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHH-HHhcCCCCcccCcHHHHHHHHHHHHHHHHHHC
Confidence 34444456667788865 4444455567778887777422 1111 11111111 0 011122477777776778
Q ss_pred CEEEE
Q 029797 111 DCFIA 115 (187)
Q Consensus 111 Da~Iv 115 (187)
|..|-
T Consensus 144 d~~i~ 148 (173)
T PRK00625 144 DYIFS 148 (173)
T ss_pred CEEEe
Confidence 88764
No 268
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=31.34 E-value=1.2e+02 Score=22.05 Aligned_cols=9 Identities=11% Similarity=0.007 Sum_probs=4.8
Q ss_pred EEEEcCCCC
Q 029797 16 VCVFCGSST 24 (187)
Q Consensus 16 I~Vfggs~~ 24 (187)
..|||++..
T Consensus 48 ~iilgspty 56 (140)
T TIGR01753 48 AVLLGCSTW 56 (140)
T ss_pred EEEEEcCCC
Confidence 446665553
No 269
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=31.32 E-value=1e+02 Score=22.16 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHC----CCeE-E--EcCCc-ccHHHHHHHHHHhcC
Q 029797 32 DAAIDLAHELVAR----RLDL-V--YGGGS-IGLMGLVSKAVHHGG 69 (187)
Q Consensus 32 ~~A~~lG~~la~~----g~~l-v--~GGg~-~GlM~a~~~gA~~~g 69 (187)
..|+.+|+.||++ |+.- + -|+-. .|-..|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 6789999999873 3322 2 23322 589999999999977
No 270
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=31.28 E-value=1.2e+02 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=22.2
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCcccHHHH
Q 029797 19 FCGSSTGKRNCYSDAAIDLAHELVARR--LDLVYGGGSIGLMGL 60 (187)
Q Consensus 19 fggs~~~~~~~~~~~A~~lG~~la~~g--~~lv~GGg~~GlM~a 60 (187)
||||...+.+...+.+.++.... +.| ..+|.||+. +....
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g-~~~~~ 47 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG-GTTDE 47 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC-chhHH
Confidence 78888754344545556555533 344 456777743 44333
No 271
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=31.21 E-value=3.2e+02 Score=23.01 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=42.0
Q ss_pred HHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCc-----hHHHHHhHHhCCCcCCCCCHHHHHHH
Q 029797 106 MARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSP-----LMMALSSLLSATSLSQHQTLKNLFKN 177 (187)
Q Consensus 106 m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~-----l~~~~~~~~~~~~i~~~~t~~e~v~~ 177 (187)
+.+..|-+|+++ +=+||.+-+..+-.. ..+++|.+++..... +......|++.|. |+||++++
T Consensus 74 l~~~~~~vi~i~iSs~lSgty~~a~~aa~~----~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~-----s~~eI~~~ 144 (275)
T TIGR00762 74 LLEEGDEVLSIHLSSGLSGTYQSARQAAEM----VDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGK-----SLEEILAK 144 (275)
T ss_pred HHhCCCeEEEEEcCCchhHHHHHHHHHHhh----CCCCCEEEECChHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHH
Confidence 344567788876 337998888766532 224689999876552 3334445665554 78888877
Q ss_pred HHh
Q 029797 178 LRS 180 (187)
Q Consensus 178 l~~ 180 (187)
+.+
T Consensus 145 l~~ 147 (275)
T TIGR00762 145 LEE 147 (275)
T ss_pred HHH
Confidence 755
No 272
>PRK09271 flavodoxin; Provisional
Probab=31.14 E-value=65 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
+|.|+-+|..++. .+.|+.+++.|.++|+.+
T Consensus 2 kv~IvY~S~tGnT---e~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNT---REVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchH---HHHHHHHHHHHHhCCCee
Confidence 5566666776652 356788888877777755
No 273
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=31.05 E-value=1.1e+02 Score=27.06 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=35.4
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCC-CCCHHHHHHHHHhh
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQ-HQTLKNLFKNLRST 181 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~-~~t~~e~v~~l~~~ 181 (187)
.+|++|...-.-|--.=+.||++ .++|||.-+..|.+ +.+++-. .|.+.. .+|++++.+.|.+.
T Consensus 310 ~~~v~v~~S~~Eg~p~~llEAma------~G~PVIas~vgg~~--e~i~~~~-~G~l~~~~~~~~~la~~I~~l 374 (407)
T cd04946 310 PVDVFVNLSESEGLPVSIMEAMS------FGIPVIATNVGGTP--EIVDNGG-NGLLLSKDPTPNELVSSLSKF 374 (407)
T ss_pred CCCEEEeCCccccccHHHHHHHH------cCCCEEeCCCCCcH--HHhcCCC-cEEEeCCCCCHHHHHHHHHHH
Confidence 35655543322232233666764 38999987776653 2222211 144443 46889888888764
No 274
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=30.89 E-value=13 Score=28.45 Aligned_cols=46 Identities=9% Similarity=0.262 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHhhcc
Q 029797 138 HDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 138 ~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~~~ 183 (187)
|-+-|++...||..++.+.+-++.-..|....=|||+++.+|..|.
T Consensus 39 ~L~~Vi~ts~Dgdkf~r~pEcYirGttIkylri~d~iid~vkee~~ 84 (134)
T KOG3293|consen 39 HLREVICTSEDGDKFFRMPECYIRGTTIKYLRIPDEIIDKVKEECV 84 (134)
T ss_pred chheeEEeccCCCceeecceeEEecceeEEEeccHHHHHHHHHHHH
Confidence 4567888888888888888888887788888999999999999985
No 275
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.85 E-value=1.5e+02 Score=25.29 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeE
Q 029797 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNV 72 (187)
Q Consensus 28 ~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~v 72 (187)
-.|.+.|-.+.+-+|.+|-.+++=|-..|-+..+.+.|.+.+|..
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~ 135 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYS 135 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCce
Confidence 478899999999999875444444446699999999999998854
No 276
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=30.60 E-value=3.6e+02 Score=23.39 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=62.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCc
Q 029797 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (187)
Q Consensus 12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~ 91 (187)
..-++=|.+..+.-. |+- -...+.++.|++.|+.+.-=- -=+=.+++.-.+.|-.+ |.|-. .|-. .+.++.
T Consensus 106 ~wIKLEVi~D~~~Ll-PD~-~etl~Aae~Lv~eGF~VlPY~---~~D~v~a~rLed~Gc~a--VMPlg-sPIG-Sg~Gl~ 176 (267)
T CHL00162 106 NFVKLEVISDPKYLL-PDP-IGTLKAAEFLVKKGFTVLPYI---NADPMLAKHLEDIGCAT--VMPLG-SPIG-SGQGLQ 176 (267)
T ss_pred CeEEEEEeCCCcccC-CCh-HHHHHHHHHHHHCCCEEeecC---CCCHHHHHHHHHcCCeE--Eeecc-Cccc-CCCCCC
Confidence 344677776655322 222 123456667778888886322 23456677777777543 33311 0100 111111
Q ss_pred eEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHH
Q 029797 92 EVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITW 132 (187)
Q Consensus 92 ~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~ 132 (187)
-..--+++.+.++.-|++.+|+||-+.+..++.+
T Consensus 177 -------n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 177 -------NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred -------CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 0233567788899999999999999999999855
No 277
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.50 E-value=2.1e+02 Score=24.12 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=33.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC-----------------eEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRL-----------------DLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~-----------------~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
++++|| .+ +...+.+.++-+++.++|+ .++.| |. |.|=.+++.. +-.++||-
T Consensus 1 m~~~~~--~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iG-GD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YR----EEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVG-GD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eC----ccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEEC-Cc-HHHHHHHHHc---CCCEEEEe
Confidence 367777 22 2244677888888877653 34445 46 7776555554 77788885
Q ss_pred C
Q 029797 77 P 77 (187)
Q Consensus 77 p 77 (187)
.
T Consensus 70 ~ 70 (256)
T PRK14075 70 A 70 (256)
T ss_pred C
Confidence 4
No 278
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.43 E-value=3.6e+02 Score=23.37 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCC
Q 029797 55 IGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGG 119 (187)
Q Consensus 55 ~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG 119 (187)
+|.=-.+++.+.+.+..+++|.|..+.. |..... ..-...-..|.+.+|.+|+++--
T Consensus 100 SG~ap~ia~~~ke~~~~~~~vvt~Pf~~-Eg~~~~-------~NA~~~l~~L~~~~D~~iv~dN~ 156 (303)
T cd02191 100 TGGAPVVAEHLKRIGTLTVAVVTLPFSD-EGGIRM-------LNAAEGFQTLVREVDNLMVIPNE 156 (303)
T ss_pred hhHHHHHHHHHHHhCCCEEEEEeCCccc-CCccch-------hhHHHHHHHHHHhCCEEEEEehH
Confidence 4677777888999998999997654321 111111 12234455678889999999864
No 279
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=30.29 E-value=1.4e+02 Score=25.46 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=31.8
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhC-CCCCcEEEEc-CCCCchHHH-HHhHHh-------CCCc-----CCCCCHHHHHH
Q 029797 112 CFIALPGGYGTLEELLEVITWAQLG-IHDKPVCVAN-KPKSPLMMA-LSSLLS-------ATSL-----SQHQTLKNLFK 176 (187)
Q Consensus 112 a~IvlpGG~GTL~El~~a~~~~~lg-~~~kPvill~-~~g~~l~~~-~~~~~~-------~~~i-----~~~~t~~e~v~ 176 (187)
|+|+|-||.||- +| ...||.+=+. .+|-++.++ ++.+.. ...+ ....|.++..+
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~ 70 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQC 70 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHH
Confidence 689999999993 34 2356654222 225554332 233332 1112 22377777777
Q ss_pred HHHh
Q 029797 177 NLRS 180 (187)
Q Consensus 177 ~l~~ 180 (187)
++++
T Consensus 71 ~l~~ 74 (266)
T cd04180 71 YFEK 74 (266)
T ss_pred HHHH
Confidence 7765
No 280
>PRK06703 flavodoxin; Provisional
Probab=30.16 E-value=1.3e+02 Score=22.72 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=7.1
Q ss_pred HHHHHHhcCCeEEE
Q 029797 61 VSKAVHHGGGNVIG 74 (187)
Q Consensus 61 ~~~gA~~~gG~viG 74 (187)
..+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44444445665554
No 281
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=30.12 E-value=67 Score=23.88 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=18.0
Q ss_pred CEEEEeCCChhhHH------HHHHHHHHHHhCCCCCcEEEEcC
Q 029797 111 DCFIALPGGYGTLE------ELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 111 Da~IvlpGG~GTL~------El~~a~~~~~lg~~~kPvill~~ 147 (187)
|+ |++|||.+... ++...+. +...+++||..+..
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~--~~~~~~~~I~aic~ 103 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVT--EAFKHGKPIGAVGE 103 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHH--HHHhcCCeEEEcCc
Confidence 55 55577766543 2222221 22356888887654
No 282
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=29.91 E-value=1.2e+02 Score=28.68 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=22.5
Q ss_pred CEEEEeCCCh--hhHHHHHHHHHHHHhCCCCCcEEEEcCCCCch
Q 029797 111 DCFIALPGGY--GTLEELLEVITWAQLGIHDKPVCVANKPKSPL 152 (187)
Q Consensus 111 Da~IvlpGG~--GTL~El~~a~~~~~lg~~~kPvill~~~g~~l 152 (187)
+++.+.+-|. =|..||..+. +.+. +..++++|+++|..
T Consensus 428 ~Vv~i~GDG~F~m~~qEL~Ta~---r~~l-pv~ivv~nN~~~g~ 467 (550)
T COG0028 428 KVVAIAGDGGFMMNGQELETAV---RYGL-PVKIVVLNNGGYGM 467 (550)
T ss_pred cEEEEEcccHHhccHHHHHHHH---HhCC-CEEEEEEECCcccc
Confidence 3555555442 4566666554 4443 66667899888843
No 283
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=29.65 E-value=53 Score=27.17 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchH
Q 029797 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLM 153 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~ 153 (187)
..+....++.+|.+|+++ |--.+.-++.+.+...++.|++++|.+..++.
T Consensus 162 ~~~~~~~~~~~DlllviG----TSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~ 211 (225)
T cd01411 162 IEEAIQAIEKADLLVIVG----TSFVVYPFAGLIDYRQAGANLIAINKEPTQLD 211 (225)
T ss_pred HHHHHHHHhcCCEEEEEC----cCCeehhHHHHHHHHhCCCeEEEECCCCCCCC
Confidence 356666778899888844 43334344443333236899999999866443
No 284
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=29.63 E-value=2.2e+02 Score=27.45 Aligned_cols=69 Identities=25% Similarity=0.219 Sum_probs=45.3
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHhhc
Q 029797 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTC 182 (187)
Q Consensus 113 ~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~~ 182 (187)
+|..|+..-...+.+.+......-.++||+++-...| ........++++.-++...||+.+++.+--.+
T Consensus 380 vi~~~~~~~~~~~~a~~~~~~~~~~~~k~~v~~~~gg-~~~~~~~~~l~~~gip~~~~pe~a~~a~~~l~ 448 (598)
T COG1042 380 VIVLPPASADPEETAEAIIRATAKKRGKPVVVSSMGG-ESSEKARRLLEEAGIPTYPTPERAVKALSALA 448 (598)
T ss_pred EEecCCCCCCchhhhHHHHHhhhhhCCCceEEEecCC-cchHHHHHHhhhcCCCCccCchHHHHHHHHHH
Confidence 4455777655555555544322224689999888877 54555556777777788899998888765443
No 285
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.53 E-value=92 Score=28.31 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHH-----hCCCcCCCCCHHHHHHH
Q 029797 105 EMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLL-----SATSLSQHQTLKNLFKN 177 (187)
Q Consensus 105 ~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~-----~~~~i~~~~t~~e~v~~ 177 (187)
.+...+|++|.-. -|.|. =+.|+++ .++|||.-+..+.. +++++.. ..|.+....|++++.+.
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~--~vlEAma------~G~PVVatd~g~~~--elv~~~~~~~~g~~G~lv~~~d~~~la~a 435 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPL--VILEAMA------AGIPVVATDVGSCR--ELIEGADDEALGPAGEVVPPADPEALARA 435 (475)
T ss_pred HHHHhCCEEEeCchhhcCCh--HHHHHHH------cCCCEEECCCCChH--HHhcCCcccccCCceEEECCCCHHHHHHH
Confidence 3457899876432 13332 2566664 38999987665542 4444421 24666666888888887
Q ss_pred HHhh
Q 029797 178 LRST 181 (187)
Q Consensus 178 l~~~ 181 (187)
|.+.
T Consensus 436 i~~l 439 (475)
T cd03813 436 ILRL 439 (475)
T ss_pred HHHH
Confidence 7653
No 286
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=29.39 E-value=99 Score=21.19 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=23.3
Q ss_pred cCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 8 QKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 8 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
++.+..+.+.++. ...+ ++..+=.++++.|+++|+.++.
T Consensus 10 ~p~~~~k~~v~i~-HG~~---eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 10 KPENPPKAVVVIV-HGFG---EHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred cCCCCCCEEEEEe-CCcH---HHHHHHHHHHHHHHhCCCEEEE
Confidence 3444434455553 3333 2334457789999999998874
No 287
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=29.22 E-value=85 Score=27.39 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=43.6
Q ss_pred HhCCEEEEeCCC-hhhHHHHHHHHHHHHhC--CCCCcEEEEcCCCC-c--hHHHHHhHHhC----C-CcCCCCCHHHHHH
Q 029797 108 RHSDCFIALPGG-YGTLEELLEVITWAQLG--IHDKPVCVANKPKS-P--LMMALSSLLSA----T-SLSQHQTLKNLFK 176 (187)
Q Consensus 108 ~~sDa~IvlpGG-~GTL~El~~a~~~~~lg--~~~kPvill~~~g~-~--l~~~~~~~~~~----~-~i~~~~t~~e~v~ 176 (187)
.+.|..++.|.| .=+.+++.+........ ..+++|++++.-.. . ....+-+.++. . ++-.++++..++.
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 356776666644 23467777766544432 23567777655332 1 11111122222 2 2334588999999
Q ss_pred HHHhhcccc
Q 029797 177 NLRSTCLCM 185 (187)
Q Consensus 177 ~l~~~~~~~ 185 (187)
.|+|+|.+.
T Consensus 156 TIrSRc~~i 164 (329)
T PRK08058 156 TILSRCQVV 164 (329)
T ss_pred HHHhhceee
Confidence 999999864
No 288
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=29.20 E-value=95 Score=27.02 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHHHHHHhCCEEEEeCCCh-hhHHHHHHHHHHHHhC--CCCCcEEEEcCCCC-c---hHHHHHhHHh---CC-CcCCCCC
Q 029797 102 RKAEMARHSDCFIALPGGY-GTLEELLEVITWAQLG--IHDKPVCVANKPKS-P---LMMALSSLLS---AT-SLSQHQT 170 (187)
Q Consensus 102 R~~~m~~~sDa~IvlpGG~-GTL~El~~a~~~~~lg--~~~kPvill~~~g~-~---l~~~~~~~~~---~~-~i~~~~t 170 (187)
|...--.+.|..++-|-|. =..+++-+.....+.. ..+..|+++..-.. . ...+++.+=+ .. ++-.+++
T Consensus 64 ~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 64 RLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred HHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3333346788888888653 2567777766554443 23556766654333 1 1122222211 11 3334689
Q ss_pred HHHHHHHHHhhcccc
Q 029797 171 LKNLFKNLRSTCLCM 185 (187)
Q Consensus 171 ~~e~v~~l~~~~~~~ 185 (187)
++.++.-|+|+|.+.
T Consensus 144 ~~~lLpTI~SRcq~i 158 (290)
T PRK07276 144 ENKVLPTIKSRTQIF 158 (290)
T ss_pred hhhCchHHHHcceee
Confidence 999999999999753
No 289
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.17 E-value=4e+02 Score=23.51 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=11.0
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 3689999999984
No 290
>PRK08105 flavodoxin; Provisional
Probab=28.80 E-value=1.2e+02 Score=23.26 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHC-----C-CeEEEcCCc------ccHHHHHHHHHHhcCCeEEE
Q 029797 33 AAIDLAHELVAR-----R-LDLVYGGGS------IGLMGLVSKAVHHGGGNVIG 74 (187)
Q Consensus 33 ~A~~lG~~la~~-----g-~~lv~GGg~------~GlM~a~~~gA~~~gG~viG 74 (187)
.+.++-+.|.+. | .--|.|-|. .+.+..+.+-..+.|+..++
T Consensus 67 ~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 67 SIVPLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred hHHHHHHHHHhcCcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 355555555442 2 123667665 23444444444456777666
No 291
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=28.72 E-value=1.6e+02 Score=22.68 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH----CCCe-EEEcCC---cccHHHHHHHHHHhcCC
Q 029797 31 SDAAIDLAHELVA----RRLD-LVYGGG---SIGLMGLVSKAVHHGGG 70 (187)
Q Consensus 31 ~~~A~~lG~~la~----~g~~-lv~GGg---~~GlM~a~~~gA~~~gG 70 (187)
.+.|+.+|..+|+ .|+. +|+|=+ +.|--.|++++|.|+|-
T Consensus 76 ~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaGL 123 (125)
T COG0256 76 TEAAYLVGKLIAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAGL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcCc
Confidence 4678888888886 3553 455533 37889999999999883
No 292
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=28.63 E-value=1.2e+02 Score=24.54 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=22.5
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH-CCCeEEEcCCcccHH
Q 029797 19 FCGSSTGKRNCYSDAAIDLAHELVA-RRLDLVYGGGSIGLM 58 (187)
Q Consensus 19 fggs~~~~~~~~~~~A~~lG~~la~-~g~~lv~GGg~~GlM 58 (187)
||||.....+.+.+.+.++..+... ....||.|||. +.-
T Consensus 4 iGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~-~~~ 43 (248)
T cd02115 4 FGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGP-QIT 43 (248)
T ss_pred eCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCC-CcC
Confidence 6888875434454555555443211 24677999987 443
No 293
>PRK04155 chaperone protein HchA; Provisional
Probab=28.58 E-value=58 Score=28.26 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEeCCChhhHHHHHH------HHHHHHhCCCCCcEEEEcC
Q 029797 112 CFIALPGGYGTLEELLE------VITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 112 a~IvlpGG~GTL~El~~------a~~~~~lg~~~kPvill~~ 147 (187)
..|++|||.|.+..|.+ .+.+.. .++|||..+..
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~--~~~K~VaAICH 188 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWAL--DNDRFIITLCH 188 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHH--HcCCEEEEECh
Confidence 47789999998766533 332221 35788876544
No 294
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.58 E-value=1.5e+02 Score=23.07 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCeEEEEeC
Q 029797 58 MGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 58 M~a~~~gA~~~gG~viGI~p 77 (187)
|+.+.+-..+.|..++|-.|
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 45555555556777777654
No 295
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=28.56 E-value=1.8e+02 Score=26.89 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHH
Q 029797 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLL 160 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~ 160 (187)
..|+-+=...++++++-|--+|||.|.+++..+.+- ++--.++--.+|-.-..++.++.
T Consensus 318 ~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~--~gy~~viSHRSGETeD~tIAdLA 376 (423)
T COG0148 318 RLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKD--AGYTAVISHRSGETEDTTIADLA 376 (423)
T ss_pred HHHHHHHhccCceEEEechhcccHHHHHHHHHHHHH--CCCeEEEecCCCCcccchHHHHH
Confidence 456666667799999999999999999999987653 35555555555554334444443
No 296
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=28.54 E-value=95 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=18.2
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHH
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQ 134 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~ 134 (187)
.+++++|.+++.||++++...+...+
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~ 154 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALK 154 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46777788888888888876665544
No 297
>PRK00942 acetylglutamate kinase; Provisional
Probab=28.32 E-value=71 Score=27.16 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=28.6
Q ss_pred CCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCc
Q 029797 9 KNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARR--LDLVYGGGS 54 (187)
Q Consensus 9 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g--~~lv~GGg~ 54 (187)
.++....|--||||...........+.++.. +.+.| ..||.|||+
T Consensus 20 ~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~-l~~~g~~vVlVhGgg~ 66 (283)
T PRK00942 20 RFMGKTIVIKYGGNAMTDEELKEAFARDIVL-LKQVGINPVVVHGGGP 66 (283)
T ss_pred HHcCCeEEEEEChHHhcCcchHHHHHHHHHH-HHHCCCCEEEEeCChH
Confidence 3444456788999887554444456666664 44554 467999865
No 298
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.31 E-value=3.5e+02 Score=25.33 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHC-CCeEEEcCCcc--cHHHHHHHHHHhcCCeEEEEeCcc--cccccccCCCCceEeecCCHHHHHHHHH
Q 029797 33 AAIDLAHELVAR-RLDLVYGGGSI--GLMGLVSKAVHHGGGNVIGIIPRT--LMNKEITGETVGEVRPVADMHQRKAEMA 107 (187)
Q Consensus 33 ~A~~lG~~la~~-g~~lv~GGg~~--GlM~a~~~gA~~~gG~viGI~p~~--~~~~e~~~~~~~~~~~~~~m~~R~~~m~ 107 (187)
...++.+.|.+. .-.|+.|+|-. |..+++.+=|-..|-.|+-- +.. ..|.+ |+.+.-.+=...-...+. .+
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt-~~gkg~~~~~--hp~~~G~~G~~~~~~~~~-~~ 270 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVST-LMGLGAFPGT--HKNSLGMLGMHGRYEANM-AM 270 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc-ccccccCCCC--CcccccCCccCCCHHHHH-HH
Confidence 344555666554 56667777653 77787777777777665521 111 11111 111111110011123333 56
Q ss_pred HhCCEEEEeCCChh
Q 029797 108 RHSDCFIALPGGYG 121 (187)
Q Consensus 108 ~~sDa~IvlpGG~G 121 (187)
+.||++|+++-..+
T Consensus 271 ~~aD~vl~vG~~~~ 284 (572)
T PRK08979 271 HNADLIFGIGVRFD 284 (572)
T ss_pred HhCCEEEEEcCCCC
Confidence 78999999986643
No 299
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=28.26 E-value=2.2e+02 Score=24.18 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=36.9
Q ss_pred HHHHHHhCCEEEEeCC--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 103 KAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 103 ~~~m~~~sDa~IvlpG--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
...+...||+++..+. |.|.. +.|+++ .++|||..+..|.. +.+..- ..|++.. .+++++.+.|.
T Consensus 293 ~~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~~~--e~i~~~-~~g~~~~-~~~~~~a~~i~ 359 (392)
T cd03805 293 KELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGGPL--ETVVDG-ETGFLCE-PTPEEFAEAML 359 (392)
T ss_pred HHHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCCcH--HHhccC-CceEEeC-CCHHHHHHHHH
Confidence 3456788999886432 23332 456664 38999998876542 222221 1244433 36776666554
No 300
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.21 E-value=4e+02 Score=23.14 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCEEEEeCCChhhHHHHHHH
Q 029797 100 HQRKAEMARHSDCFIALPGGYGTLEELLEV 129 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~GTL~El~~a 129 (187)
++|-+.+.+..|.-+||.||+|+-+|-+..
T Consensus 188 ~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ 217 (283)
T PRK07998 188 IPLLKRIAEVSPVPLVIHGGSGIPPEILRS 217 (283)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCCHHHHHH
Confidence 578888888889999999999999877643
No 301
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.00 E-value=2.5e+02 Score=20.66 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCe-EEEcCCcc--cHHHHHHHHHHhcCCeEEEEeCcc--cccccccCCCCceEeecCC--HHHHHHHHHH
Q 029797 36 DLAHELVARRLD-LVYGGGSI--GLMGLVSKAVHHGGGNVIGIIPRT--LMNKEITGETVGEVRPVAD--MHQRKAEMAR 108 (187)
Q Consensus 36 ~lG~~la~~g~~-lv~GGg~~--GlM~a~~~gA~~~gG~viGI~p~~--~~~~e~~~~~~~~~~~~~~--m~~R~~~m~~ 108 (187)
++.+.|.+..-. ++.|.|-. |.-+++.+=|...|-.++-- |.. ..+.+ ++.+.- .... -...+.. ++
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t-~~~kg~i~~~--hp~~~G--~~g~~~~~~~~~~-l~ 76 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATT-PMGKGVIPED--HPLFLG--YLGLFGSPAANEA-LE 76 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEE-GGGTTSSTTT--STTEEE--ESCGGSCHHHHHH-HH
T ss_pred HHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEec-CccccccCCC--Cchhcc--cCCccCCHHHHHH-hc
Confidence 455666655444 45555433 56666666666667555322 211 11111 221111 1111 2444555 49
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCC-CCcEEEEcCCCC
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIH-DKPVCVANKPKS 150 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~-~kPvill~~~g~ 150 (187)
.||.+|+++-.....+-... + .... +.++|-++.+..
T Consensus 77 ~aDlvl~iG~~~~~~~~~~~---~--~~~~~~~~~I~I~~d~~ 114 (137)
T PF00205_consen 77 QADLVLAIGTRLSDFNTYGF---S--PAFNPDAKIIQIDPDPA 114 (137)
T ss_dssp HSSEEEEESSSSSTTTTTTT---T--GCSTTTSEEEEEESSGG
T ss_pred CCCEEEEECCCCcccccccc---c--cccCCCCEEEEEECCHH
Confidence 99999999876533221110 0 0111 237888887754
No 302
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=27.92 E-value=4e+02 Score=24.50 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=46.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE---EEcCCcccHHHHHHHHHHhcCCeEEEEeCccc
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL---VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL 80 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l---v~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~ 80 (187)
+.+-.+.|.- .+--.+.+.+|-..+.++--.| |+|+|.+=+|-.+.+.|++.||.|-=.+|...
T Consensus 89 ~s~L~W~G~L---s~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvD 155 (441)
T COG4098 89 KSVLQWKGTL---SPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVD 155 (441)
T ss_pred cceeeecccc---ChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCccc
Confidence 3455554422 2344567788888887765444 89999999999999999999998766677543
No 303
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=27.83 E-value=70 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCC-ChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGK-RNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~-~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++|+|+-+|-... .-+..+. ..--..|.+.|+.+..=+
T Consensus 2 kkVlills~~~~~dG~e~~E~-~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEA-VLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CEEEEEEccCCCCCCEehhHH-HHHHHHHHHCCCEEEEEe
Confidence 5788886532111 1122222 233445667888886544
No 304
>PRK07832 short chain dehydrogenase; Provisional
Probab=27.76 E-value=3.4e+02 Score=22.13 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV 93 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~ 93 (187)
+++.|.|+++ -....+++.++++|+.++.-+-...-.+...+.....++..+-+.+......+...
T Consensus 1 k~vlItGas~--------giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~------ 66 (272)
T PRK07832 1 KRCFVTGAAS--------GIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVA------ 66 (272)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHH------
Q ss_pred eecCCHHHHHHHHHHhCCEEEEeCC
Q 029797 94 RPVADMHQRKAEMARHSDCFIALPG 118 (187)
Q Consensus 94 ~~~~~m~~R~~~m~~~sDa~IvlpG 118 (187)
.+.++-.......|++|-..|
T Consensus 67 ----~~~~~~~~~~~~id~lv~~ag 87 (272)
T PRK07832 67 ----AFAADIHAAHGSMDVVMNIAG 87 (272)
T ss_pred ----HHHHHHHHhcCCCCEEEECCC
No 305
>PRK14557 pyrH uridylate kinase; Provisional
Probab=27.62 E-value=92 Score=26.27 Aligned_cols=41 Identities=27% Similarity=0.529 Sum_probs=21.8
Q ss_pred cceEEE-EcCCCCCCCh---HHHHHHHHHHHHHH---HCC--CeEEEcCC
Q 029797 13 FKRVCV-FCGSSTGKRN---CYSDAAIDLAHELV---ARR--LDLVYGGG 53 (187)
Q Consensus 13 ~~~I~V-fggs~~~~~~---~~~~~A~~lG~~la---~~g--~~lv~GGg 53 (187)
.++|.+ |||+....+. .-.+..+++.+.|+ +.| ..||.|||
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgG 53 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGG 53 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 344544 7888765421 01134555555555 345 45688885
No 306
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=27.55 E-value=1.1e+02 Score=29.61 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=36.5
Q ss_pred HHHHHH---HHHhCCEEEEeCCC-hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHH
Q 029797 100 HQRKAE---MARHSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLF 175 (187)
Q Consensus 100 ~~R~~~---m~~~sDa~IvlpGG-~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v 175 (187)
..|+.. |...+|++||++|- +.--.-|+++.. .+++|...+.....--.+|++..-.=|.-..++||+.++
T Consensus 194 ~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~-----~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i 268 (647)
T PRK00087 194 EVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICK-----SNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWII 268 (647)
T ss_pred hhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHH-----HHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHH
Confidence 456554 44558999999987 222233443332 125787777554331123444321112223346666444
Q ss_pred HH
Q 029797 176 KN 177 (187)
Q Consensus 176 ~~ 177 (187)
+.
T Consensus 269 ~~ 270 (647)
T PRK00087 269 EE 270 (647)
T ss_pred HH
Confidence 43
No 307
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=27.52 E-value=77 Score=24.24 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=23.5
Q ss_pred CEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 111 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 111 Da~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
.++|+++||+=.-.|..+.+. +..++|.++.+
T Consensus 63 ~~VIa~GGG~~~~~~~~~~L~------~~g~vI~L~~~ 94 (158)
T PF01202_consen 63 NCVIACGGGIVLKEENRELLK------ENGLVIYLDAD 94 (158)
T ss_dssp SEEEEE-TTGGGSHHHHHHHH------HHSEEEEEE--
T ss_pred cEEEeCCCCCcCcHHHHHHHH------hCCEEEEEeCC
Confidence 689999999999999888774 35778887554
No 308
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=27.25 E-value=1.2e+02 Score=25.74 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 103 KAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
-..+...||++|.-. -+.|.. +.|+++ .++|||.-+..|.
T Consensus 274 ~~~~~~~aDv~v~ps~~e~~g~~--~lEA~a------~G~PvI~s~~~~~ 315 (388)
T TIGR02149 274 LVELLSNAEVFVCPSIYEPLGIV--NLEAMA------CGTPVVASATGGI 315 (388)
T ss_pred HHHHHHhCCEEEeCCccCCCChH--HHHHHH------cCCCEEEeCCCCH
Confidence 345578899887642 334433 356664 4899998876654
No 309
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=27.25 E-value=4.5e+02 Score=23.39 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=38.8
Q ss_pred HHHHHHhCCEEEEeC---CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHH-----hCCCcCCCCCHHHH
Q 029797 103 KAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLL-----SATSLSQHQTLKNL 174 (187)
Q Consensus 103 ~~~m~~~sDa~Ivlp---GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~-----~~~~i~~~~t~~e~ 174 (187)
...+...||+++. | -+.|.. +.|+++ .++|+|..+..|.+ +.+.+.. ..|++-...+++++
T Consensus 364 ~~~~~~~aDv~l~-pS~~E~~gl~--~lEAma------~G~pvI~~~~gg~~--e~v~~~~~~~~~~~G~~~~~~~~~~l 432 (476)
T cd03791 364 AHLIYAGADFFLM-PSRFEPCGLT--QMYAMR------YGTVPIVRATGGLA--DTVIDYNEDTGEGTGFVFEGYNADAL 432 (476)
T ss_pred HHHHHHhCCEEEC-CCCCCCCcHH--HHHHhh------CCCCCEECcCCCcc--ceEeCCcCCCCCCCeEEeCCCCHHHH
Confidence 3456778998875 4 234542 345543 48999887776663 1111111 14555555677777
Q ss_pred HHHHHh
Q 029797 175 FKNLRS 180 (187)
Q Consensus 175 v~~l~~ 180 (187)
.+.|.+
T Consensus 433 ~~~i~~ 438 (476)
T cd03791 433 LAALRR 438 (476)
T ss_pred HHHHHH
Confidence 766654
No 310
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.25 E-value=1.9e+02 Score=22.07 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=33.0
Q ss_pred HHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 36 DLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 36 ~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
-++..|..+|+.+++-|-. =-.+...+.|.+.+..+||++
T Consensus 18 iv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred HHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 3455566789999999854 777999999999999999994
No 311
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=27.12 E-value=1.1e+02 Score=26.73 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhC--CCCCcEEEEcCCCC--c-----hHHHHHhHHhCCCcCCCCCHHHHHHHHHhhcccc
Q 029797 123 LEELLEVITWAQLG--IHDKPVCVANKPKS--P-----LMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCM 185 (187)
Q Consensus 123 L~El~~a~~~~~lg--~~~kPvill~~~g~--~-----l~~~~~~~~~~~~i~~~~t~~e~v~~l~~~~~~~ 185 (187)
.+++-++....+.. ..+..|+++..... . |...++..-..-++-.+++++.++..|+|+|.+.
T Consensus 106 id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i 177 (314)
T PRK07399 106 LEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQII 177 (314)
T ss_pred HHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEE
Confidence 45555555444433 23566777665333 1 2223332221123334589999999999999764
No 312
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=27.06 E-value=78 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=18.8
Q ss_pred EcCCCCCCC---hHHHHHHHHHHHHHHHCCCeEEEcCCc
Q 029797 19 FCGSSTGKR---NCYSDAAIDLAHELVARRLDLVYGGGS 54 (187)
Q Consensus 19 fggs~~~~~---~~~~~~A~~lG~~la~~g~~lv~GGg~ 54 (187)
||||..... +...+.++++.+...+....||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 577766543 233334444443322245677898864
No 313
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=26.95 E-value=59 Score=24.54 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=19.1
Q ss_pred EEEeCCChhhHHHHH-H---HHHHHH-hCCCCCcEEEEcCC
Q 029797 113 FIALPGGYGTLEELL-E---VITWAQ-LGIHDKPVCVANKP 148 (187)
Q Consensus 113 ~IvlpGG~GTL~El~-~---a~~~~~-lg~~~kPvill~~~ 148 (187)
.|++|||.|..+-+. . +..+.+ ...++|||..+...
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 678899988655554 1 121111 11368998877543
No 314
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.83 E-value=1.7e+02 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=8.1
Q ss_pred hCCEEEEeCCChhhHH
Q 029797 109 HSDCFIALPGGYGTLE 124 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~ 124 (187)
..|++|+.+....+++
T Consensus 60 ~vdgiIi~~~~~~~~~ 75 (272)
T cd06300 60 GVDAIIINPASPTALN 75 (272)
T ss_pred CCCEEEEeCCChhhhH
Confidence 4566666554433333
No 315
>PRK05866 short chain dehydrogenase; Provisional
Probab=26.82 E-value=2.8e+02 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++|.|.|+++ -..+.+++.++++|+.|+.-+
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEE
Confidence 4566666554 124556666667777776554
No 316
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=26.80 E-value=2.2e+02 Score=23.13 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCEEEEeCC--ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 101 QRKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpG--G~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
+.-..+...||++|.-.. +.|+ =+.|+++ .++|||..+..+.
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~------~g~PvI~~~~~~~ 313 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMA------AGLPVVAVDAPGL 313 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHH------cCCcEEEeCCCCh
Confidence 344566778999775432 2222 2556653 3899998876554
No 317
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=26.76 E-value=2.8e+02 Score=22.32 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHHHHC-CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccc--c---cccccCCCC-ceEe---ecCCHHHHHH
Q 029797 35 IDLAHELVAR-RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL--M---NKEITGETV-GEVR---PVADMHQRKA 104 (187)
Q Consensus 35 ~~lG~~la~~-g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~--~---~~e~~~~~~-~~~~---~~~~m~~R~~ 104 (187)
.++-+.+... +..|-|||| =+|..-++.++...|.||-+--+.. . ..+...+.+ +.-. +.+-|.+|+.
T Consensus 62 ~~vl~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~ 139 (172)
T COG0703 62 TEVLKELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQP 139 (172)
T ss_pred HHHHHHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHH
Confidence 3334444444 577788886 4888888999998887777632211 1 101111111 1111 2234578998
Q ss_pred HHHHhCCEEEEeCCCh-hhHHHHHHHH
Q 029797 105 EMARHSDCFIALPGGY-GTLEELLEVI 130 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~-GTL~El~~a~ 130 (187)
+.-+.||.++--.... =..+|+.+.+
T Consensus 140 ~Y~e~a~~~~~~~~~~~~v~~~i~~~l 166 (172)
T COG0703 140 LYREVADFIIDTDDRSEEVVEEILEAL 166 (172)
T ss_pred HHHHhCcEEecCCCCcHHHHHHHHHHH
Confidence 8888777766655554 3444444443
No 318
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=26.74 E-value=3e+02 Score=25.23 Aligned_cols=118 Identities=18% Similarity=0.238 Sum_probs=71.7
Q ss_pred EEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHH
Q 029797 49 VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLE 128 (187)
Q Consensus 49 v~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~ 128 (187)
|-|| ..|+-...++-+. |-....... .+-. .+.+.++.+- ++-+.+.......|.+-||+-|=+|+..
T Consensus 84 VLgG-~~Gl~k~~sKFvI-------GAMt~~~i~-rY~~--~g~LlIVGnR-~~iq~lAL~~~~AVLvTGGF~~s~evi~ 151 (432)
T COG4109 84 VLGG-RAGLEKELSKFVI-------GAMTLDAIL-RYLD--PGGLLIVGNR-EDIQLLALENGNAVLVTGGFDVSDEVIK 151 (432)
T ss_pred eecc-ccchhhhhhhhhh-------hhhhHHHHH-hhcC--CCceEEEecH-HHHHHHHHhcCCeEEEeCCCCccHHHHH
Confidence 4476 5699888877543 221111000 0111 1234444443 3445556667777888999999999975
Q ss_pred HHHHHHhCCCCCcEEEEcCCCCch-----HHHHHhHHh---------------CCCcCCCCCHHHHHHHHHhhcc
Q 029797 129 VITWAQLGIHDKPVCVANKPKSPL-----MMALSSLLS---------------ATSLSQHQTLKNLFKNLRSTCL 183 (187)
Q Consensus 129 a~~~~~lg~~~kPvill~~~g~~l-----~~~~~~~~~---------------~~~i~~~~t~~e~v~~l~~~~~ 183 (187)
.. ..++.||+--+.|-|.. .+..+.++. .+++...+++++..+..+++.-
T Consensus 152 lA-----ne~~lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~ 221 (432)
T COG4109 152 LA-----NEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGH 221 (432)
T ss_pred hh-----cccCCceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCC
Confidence 43 25789999888888832 333343332 2455556999999998888753
No 319
>PRK07524 hypothetical protein; Provisional
Probab=26.67 E-value=3.6e+02 Score=24.95 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHH-CCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCc-ccccccccCCCCceEeecCCHHHHHHHHHHh
Q 029797 32 DAAIDLAHELVA-RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR-TLMNKEITGETVGEVRPVADMHQRKAEMARH 109 (187)
Q Consensus 32 ~~A~~lG~~la~-~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~-~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~ 109 (187)
+...++.+.|.+ +.-.|+.|+|-.+.-+++.+-|-.-+-.|+--... ..+|.+.+. .++. ..+-...+. +++.
T Consensus 189 ~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~-~~G~---~~~~~~~~~-~~~~ 263 (535)
T PRK07524 189 AALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAGHPL-LLGA---SQSLPAVRA-LIAE 263 (535)
T ss_pred HHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccccccCCCCChh-hccC---CCCCHHHHH-HHHh
Confidence 446677777766 45667777765555566666565666555522110 011211111 1111 112233444 4578
Q ss_pred CCEEEEeCCChhh
Q 029797 110 SDCFIALPGGYGT 122 (187)
Q Consensus 110 sDa~IvlpGG~GT 122 (187)
||.+|+++-..+.
T Consensus 264 aDlvl~vG~~~~~ 276 (535)
T PRK07524 264 ADVVLAVGTELGE 276 (535)
T ss_pred CCEEEEeCCCcCc
Confidence 9999999866543
No 320
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=26.62 E-value=99 Score=26.34 Aligned_cols=49 Identities=33% Similarity=0.387 Sum_probs=25.6
Q ss_pred cccccCCCCcceEEE-EcCCCCCCChHHHHHHHHHHHHHHH----CCCeEEEcCCc
Q 029797 4 EGKIQKNSRFKRVCV-FCGSSTGKRNCYSDAAIDLAHELVA----RRLDLVYGGGS 54 (187)
Q Consensus 4 ~~~~~~~~~~~~I~V-fggs~~~~~~~~~~~A~~lG~~la~----~g~~lv~GGg~ 54 (187)
+||-|-+--.-.+.| +|||-...+ . .+.-.++++.|++ ....||+|||.
T Consensus 21 ~~~~~~~~~~~~~ViKiGGSvitdk-~-~~~i~~la~~i~~~~~~~~vilV~GGG~ 74 (262)
T cd04255 21 AGKEQFRLLPDLNVVKIGGQSIIDR-G-AEAVLPLVEEIVALRPEHKLLILTGGGT 74 (262)
T ss_pred ccCCceecCCCcEEEEeccceecCC-c-HHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 455443322222334 677766432 1 1334455555553 45778999987
No 321
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=26.58 E-value=1.6e+02 Score=22.02 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHHH-HHCCCeE--EEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 34 AIDLAHEL-VARRLDL--VYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 34 A~~lG~~l-a~~g~~l--v~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
++++-+.. .+.|-.+ ++..|.....=.+++.|++.|-.||+++
T Consensus 92 ~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34444441 2334443 5666677788888899999999999984
No 322
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=26.49 E-value=3.3e+02 Score=21.64 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccccc---ccccCCCCceEeec----CCHHHHHH
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMN---KEITGETVGEVRPV----ADMHQRKA 104 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~---~e~~~~~~~~~~~~----~~m~~R~~ 104 (187)
+....+.+........+++.| ..++-+....-+...+..-+=|+|..... .....-++.+..+. .....+..
T Consensus 55 ~~~~~i~~~~~g~~vv~l~~G-DP~~~~~~~~l~~~~~~~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~~~~ 133 (204)
T TIGR02467 55 ELLEFIAATRKEKRVVVLASG-DPLFYGIGRTLAERLGKERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDELLL 133 (204)
T ss_pred HHHHHHHHhcCCCCEEEEecC-CCcccccHHHHHHhCCCCcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcHHHH
Confidence 333444333322345566765 44777766555555543346667765311 01111112222211 11122223
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCC-cEEEEcCCCCc
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDK-PVCVANKPKSP 151 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~k-Pvill~~~g~~ 151 (187)
..+...+.++++.++..++.++.+.+. ..|..+. |+.+...-+++
T Consensus 134 ~~l~~~~~~vvl~~~~~~~~~i~~~L~--~~g~~~~~~v~v~~~l~~~ 179 (204)
T TIGR02467 134 ALLRGHRKVAVLTDPRNGPAEIARELI--ELGIGGSYELTVGENLGYE 179 (204)
T ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHH--HCCCCCCeEEEEEcccCCC
Confidence 345567788888888889999998774 3454344 89888777773
No 323
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=26.40 E-value=63 Score=29.65 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCc----------ccHHHHHHHHHHhcCCe
Q 029797 32 DAAIDLAHELVARRLDLVYGGGS----------IGLMGLVSKAVHHGGGN 71 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~----------~GlM~a~~~gA~~~gG~ 71 (187)
+-|+.|++.|.++|+.+|+||-. .|+-+..+..+++.-+.
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 45677788888899999998732 26777778888876543
No 324
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=26.39 E-value=4.7e+02 Score=23.33 Aligned_cols=145 Identities=13% Similarity=0.167 Sum_probs=80.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHH---HHHHHHHhcCCe--EEEEeCccc-------ccc-ccc--C
Q 029797 23 STGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMG---LVSKAVHHGGGN--VIGIIPRTL-------MNK-EIT--G 87 (187)
Q Consensus 23 ~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~---a~~~gA~~~gG~--viGI~p~~~-------~~~-e~~--~ 87 (187)
..-+|+-+ +.-.+.+-..|+.|..+| +|..+|. .+-|.|++..|. -++|....- -|. +.. .
T Consensus 133 ~vdND~Tl-~~L~k~Avs~A~AGADiV---APSdMMDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sa 208 (320)
T cd04824 133 TINNEASV-KRLAEVALAYAKAGAHIV---APSDMMDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSA 208 (320)
T ss_pred cCcCHHHH-HHHHHHHHHHHHhCCCEE---ecccccccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCC
Confidence 34445544 444456667788999999 5667775 566788887776 577764211 011 100 1
Q ss_pred CCCc--eEeecCCHHHHHHHH-------HHhCCEEEEeCCChhhHHHHHHHHHHHHhCCC-CCcEEEEcCCCCchHHHHH
Q 029797 88 ETVG--EVRPVADMHQRKAEM-------ARHSDCFIALPGGYGTLEELLEVITWAQLGIH-DKPVCVANKPKSPLMMALS 157 (187)
Q Consensus 88 ~~~~--~~~~~~~m~~R~~~m-------~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~-~kPvill~~~g~~l~~~~~ 157 (187)
+.++ ..++-+ ...|...+ -+-||.+.|=||.. -||=+.++=. .. +.|+..++++|-+ .+++
T Consensus 209 p~~gDRksYQmd-p~n~~eAlre~~~D~~EGAD~lMVKPal~-YLDIi~~~k~-----~~~~~PvaaYqVSGEY--aMik 279 (320)
T cd04824 209 PSFGDRRCYQLP-PGARGLALRAVERDVSEGADMIMVKPGTP-YLDIVREAKD-----KHPDLPLAVYHVSGEY--AMLH 279 (320)
T ss_pred CCCCCccccCCC-CcCHHHHHHHHHhhHHhCCCEEEEcCCch-HHHHHHHHHH-----hccCCCEEEEEccHHH--HHHH
Confidence 1111 111111 11222222 33499999999974 2333332211 24 8999999999987 4455
Q ss_pred hHHhCCCcCCCCCHHHHHHHHHh
Q 029797 158 SLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 158 ~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.-...|.+...+..-|.+.-+|.
T Consensus 280 aAa~~G~iDe~~~~~Esl~~ikR 302 (320)
T cd04824 280 AAAEAGAFDLKRAVLEAMTGFRR 302 (320)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHh
Confidence 55555666555555555555544
No 325
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=26.38 E-value=4.4e+02 Score=24.75 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=47.9
Q ss_pred EEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHH-HH
Q 029797 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLE-EL 126 (187)
Q Consensus 48 lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~-El 126 (187)
+|.|.|+ +=..+++.+...|.+|+.+-++.....+.....+ ...++. -+++.||.+|..+|..+.++ |.
T Consensus 258 gVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 4778765 4456777777788888776332211101011111 112332 24678999999988777665 44
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCCCc
Q 029797 127 LEVITWAQLGIHDKPVCVANKPKSP 151 (187)
Q Consensus 127 ~~a~~~~~lg~~~kPvill~~~g~~ 151 (187)
+..+ ..-.+++|...+.
T Consensus 328 ~~~M--------KpGAiLINvGr~d 344 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFD 344 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCc
Confidence 4332 3336677776663
No 326
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=26.36 E-value=3.2e+02 Score=22.52 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=46.3
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhC-------CCCCcEEEE-cCCCCch--HHHHHhHHhCCCcC---------CCCC
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLG-------IHDKPVCVA-NKPKSPL--MMALSSLLSATSLS---------QHQT 170 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg-------~~~kPvill-~~~g~~l--~~~~~~~~~~~~i~---------~~~t 170 (187)
-|+.|+.|=...||..+..-++-+-+. ..++|.|++ .-.-+.+ .+.+-++.+.|-+. .-.|
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 689999999999999998766543332 246676654 3333322 33444455566442 2399
Q ss_pred HHHHHHHHHhh
Q 029797 171 LKNLFKNLRST 181 (187)
Q Consensus 171 ~~e~v~~l~~~ 181 (187)
.||+++.+..+
T Consensus 161 ieDlvd~~v~r 171 (191)
T COG0163 161 IEDLVDFVVGR 171 (191)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 327
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.31 E-value=3.1e+02 Score=23.96 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=34.8
Q ss_pred EEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCe-EEEcCCcccHHHHHHHHHHhcCCeEEEE
Q 029797 17 CVFCGSSTGK--RNCYSDAAIDLAHELVARRLD-LVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (187)
Q Consensus 17 ~Vfggs~~~~--~~~~~~~A~~lG~~la~~g~~-lv~GGg~~GlM~a~~~gA~~~gG~viGI 75 (187)
+++|+||... +++.+ +++.+.|.++++. |++=||. |-|..+.+=+.+.+-.+|||
T Consensus 64 t~LgtsR~~~~~~~~~~---~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 64 TILGTARCPEFKTEEGR---QKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred ceeccCCCCccCCHHHH---HHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 4667777542 22333 4455556665443 3444445 99999888777678899997
No 328
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=26.19 E-value=5.4e+02 Score=23.98 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=0.0
Q ss_pred CCeEEEcCCcccHHHHHHHHHHh------cCCeEEEEeC-------------cccccccccCCCCceEeecCCHHHHHHH
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHH------GGGNVIGIIP-------------RTLMNKEITGETVGEVRPVADMHQRKAE 105 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~------~gG~viGI~p-------------~~~~~~e~~~~~~~~~~~~~~m~~R~~~ 105 (187)
.+.|||+||+.--|.++.+++.. .+..|+||.- +...-..+.+.+-+-+--..+-+.++++
T Consensus 89 ~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~i 168 (459)
T PTZ00286 89 KAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVM 168 (459)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChhhHHHH
Q ss_pred HHHhCCE---EEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 106 MARHSDC---FIALPGGYGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 106 m~~~sDa---~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
.-..-+- .++.-||-||+.-.........-.-.+.|||-+
T Consensus 169 v~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGI 211 (459)
T PTZ00286 169 VDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGI 211 (459)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEe
No 329
>PRK05568 flavodoxin; Provisional
Probab=26.19 E-value=99 Score=22.89 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=17.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
++|.|+..|..++.. +.|+.+.+.+.+.|+.+
T Consensus 2 ~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~v 33 (142)
T PRK05568 2 KKINIIYWSGTGNTE---AMANLIAEGAKENGAEV 33 (142)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHHCCCeE
Confidence 345555556655422 45666666665555543
No 330
>PLN02825 amino-acid N-acetyltransferase
Probab=26.15 E-value=1.3e+02 Score=28.47 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=33.7
Q ss_pred ccCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCCcccHHHH
Q 029797 7 IQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRL--DLVYGGGSIGLMGL 60 (187)
Q Consensus 7 ~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~--~lv~GGg~~GlM~a 60 (187)
++.+|-...|-.|||+... ++.+...+.+++. |...|+ .||.|||+ -+-+.
T Consensus 12 I~~~rgktfVIk~gG~~l~-~~~~~~l~~Dial-L~~lGi~~VlVHGggp-qI~~~ 64 (515)
T PLN02825 12 IQGHRGSTFVVVISGEVVA-GPHLDNILQDISL-LHGLGIKFVLVPGTHV-QIDKL 64 (515)
T ss_pred HHHHCCCEEEEEECchhhc-CchHHHHHHHHHH-HHHCCCCEEEEcCCCH-HHHHH
Confidence 4566666667778777764 4567667777776 344455 77999987 55443
No 331
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.08 E-value=2.6e+02 Score=25.75 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=45.2
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHH-H
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLE-E 125 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~-E 125 (187)
.+|.|.|+-| ..+++.++..|.+|+.+-.+.....+....++ + +.++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 5577876544 45666677778887776332211111111111 1 12332 23567999998887766665 3
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 126 LLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 126 l~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
.+..+ +.-.+++|...+
T Consensus 285 ~~~~m--------K~GailiNvG~~ 301 (425)
T PRK05476 285 HMEAM--------KDGAILANIGHF 301 (425)
T ss_pred HHhcC--------CCCCEEEEcCCC
Confidence 44332 233456665555
No 332
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.05 E-value=1.6e+02 Score=26.90 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=28.1
Q ss_pred eEeecCCH----HHHHHHHHHh----CCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 92 EVRPVADM----HQRKAEMARH----SDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 92 ~~~~~~~m----~~R~~~m~~~----sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
++.+.++. ..|+....+. +|++||++|- +.| .-|+++.. .+++|...+..
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~-----~~g~~ty~Ie~ 322 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAI-----ERGIPSYHIDS 322 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHH-----hcCCCEEEECC
Confidence 34444454 5666654444 7999999887 344 23333322 13577777654
No 333
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=25.91 E-value=1.5e+02 Score=25.72 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCEEEEeCCC-------hhhHHHHHHHHHHHHhC--CCCCcEEEEcCCCCchHHHHHhHH---hC----C-CcCCCCCHH
Q 029797 110 SDCFIALPGG-------YGTLEELLEVITWAQLG--IHDKPVCVANKPKSPLMMALSSLL---SA----T-SLSQHQTLK 172 (187)
Q Consensus 110 sDa~IvlpGG-------~GTL~El~~a~~~~~lg--~~~kPvill~~~g~~l~~~~~~~~---~~----~-~i~~~~t~~ 172 (187)
.|..++-|.+ .=+.+++.+.....+.. ..+..|+++..-..=-......|+ +. . ++-.+++++
T Consensus 51 PD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~ 130 (263)
T PRK06581 51 PDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAA 130 (263)
T ss_pred CCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChh
Confidence 4555555432 33677777776665544 235666666433221111222222 22 1 223468999
Q ss_pred HHHHHHHhhcccc
Q 029797 173 NLFKNLRSTCLCM 185 (187)
Q Consensus 173 e~v~~l~~~~~~~ 185 (187)
.+..-|+|+|...
T Consensus 131 ~LLpTIrSRCq~i 143 (263)
T PRK06581 131 SIISTIRSRCFKI 143 (263)
T ss_pred hCchhHhhceEEE
Confidence 9999999999754
No 334
>PRK09330 cell division protein FtsZ; Validated
Probab=25.89 E-value=3.5e+02 Score=24.58 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCC
Q 029797 56 GLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGG 119 (187)
Q Consensus 56 GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG 119 (187)
|.=-.+++-|.+.|-.+++|.|..+. .|.... ...-..--+.|.+.+|.+|++|--
T Consensus 114 GaapvIA~iake~g~ltvaVvt~PF~-fEG~~r-------~~nA~~gL~~L~~~~D~vIvi~Nd 169 (384)
T PRK09330 114 GAAPVVAEIAKELGILTVAVVTKPFS-FEGKKR-------MKQAEEGIEELRKHVDTLIVIPND 169 (384)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCcc-ccchhH-------HHHHHHHHHHHHHHCCEEEEEecH
Confidence 55557889999999999999764331 111110 001133445677899999999853
No 335
>PRK07109 short chain dehydrogenase; Provisional
Probab=25.81 E-value=3.1e+02 Score=23.64 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
++|.|.|+|+ -..+.+++.++++|+.|+.-+...--.+...+...+.|+.+..+.
T Consensus 9 k~vlITGas~--------gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 9 QVVVITGASA--------GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CEEEEECCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 4788887765 234667777788999886554321112223333334566666553
No 336
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=25.81 E-value=1.1e+02 Score=27.80 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=29.5
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
..|++||+.| .-||+|....++++- . .-||||+....-+
T Consensus 121 ~~~G~VV~HG-TDTLe~tAffls~~~-~-t~KPIVitGa~~P 159 (368)
T KOG0503|consen 121 SYDGIVVTHG-TDTLEETAFFLSFTI-N-TLKPIVITGAMRP 159 (368)
T ss_pred ccCcEEEEcC-cchHHHHHHHHHHHH-h-cCCcEEEeccccc
Confidence 3789999885 789999999998743 2 2399999765444
No 337
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=25.74 E-value=1.7e+02 Score=21.25 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=30.2
Q ss_pred hCCCCCcEEEEcCCCC--ch-HHHHHhHHhCCCcCC------CCCHHHHHHHHHh
Q 029797 135 LGIHDKPVCVANKPKS--PL-MMALSSLLSATSLSQ------HQTLKNLFKNLRS 180 (187)
Q Consensus 135 lg~~~kPvill~~~g~--~l-~~~~~~~~~~~~i~~------~~t~~e~v~~l~~ 180 (187)
.+.+-+|++.++.+|- .+ .+.-+.|-.+.++.. .++.+|+.+.|-.
T Consensus 12 ~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~ 66 (95)
T TIGR00253 12 KAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVK 66 (95)
T ss_pred HhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHH
Confidence 3345799999999997 33 444456777777653 2566666666544
No 338
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=25.67 E-value=5.5e+02 Score=23.94 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=52.4
Q ss_pred CCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeec--CCHHHHHHHHHHhCCEEEEeCCChh
Q 029797 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPV--ADMHQRKAEMARHSDCFIALPGGYG 121 (187)
Q Consensus 44 ~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~--~~m~~R~~~m~~~sDa~IvlpGG~G 121 (187)
++|.+|.|.|+.| ..+++.-.+.|-.++-|-++...-++..... ...+.- ++-..-++.-++.+|++|+.-+.--
T Consensus 417 ~~hiiI~G~G~~G--~~la~~L~~~g~~vvvId~d~~~~~~~~~~g-~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 417 CNHALLVGYGRVG--SLLGEKLLAAGIPLVVIETSRTRVDELRERG-IRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCCEEEECCChHH--HHHHHHHHHCCCCEEEEECCHHHHHHHHHCC-CeEEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 6899999998744 4577767777878888854432211222211 123322 2323334445678998887755543
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEc
Q 029797 122 TLEELLEVITWAQLGIHDKPVCVAN 146 (187)
Q Consensus 122 TL~El~~a~~~~~lg~~~kPvill~ 146 (187)
.-..+..+. .+. ..+++++..-
T Consensus 494 ~~~~iv~~~--~~~-~~~~~iiar~ 515 (558)
T PRK10669 494 EAGEIVASA--REK-RPDIEIIARA 515 (558)
T ss_pred HHHHHHHHH--HHH-CCCCeEEEEE
Confidence 333343332 222 2356666543
No 339
>PRK08114 cystathionine beta-lyase; Provisional
Probab=25.67 E-value=3.1e+02 Score=24.80 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHHhHHhC-CC-cC--CCCCHHHH
Q 029797 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALSSLLSA-TS-LS--QHQTLKNL 174 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~~~~~~-~~-i~--~~~t~~e~ 174 (187)
.+++-.-++.++..++++.|...++-+..++ .+ .+--|+ ...+.| +...+++.+..+ |. +. ...|++++
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~---~GD~Vv-~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l 140 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VE---QGDHVL-MTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI 140 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cC---CCCEEE-EeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHH
Confidence 4444445677888888888877777665544 11 223344 444555 455555544432 31 11 12456666
Q ss_pred HHHHH-hhcccccC
Q 029797 175 FKNLR-STCLCMME 187 (187)
Q Consensus 175 v~~l~-~~~~~~~~ 187 (187)
-+.|+ ++.+|.+|
T Consensus 141 ~~~l~~~TrlV~~E 154 (395)
T PRK08114 141 AKLIQPNTKVVFLE 154 (395)
T ss_pred HHhcCCCceEEEEE
Confidence 66665 46666554
No 340
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=25.66 E-value=1.7e+02 Score=26.39 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=38.6
Q ss_pred EeecCCHHHHHHHHHHhCCE-EEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcC----C
Q 029797 93 VRPVADMHQRKAEMARHSDC-FIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLS----Q 167 (187)
Q Consensus 93 ~~~~~~m~~R~~~m~~~sDa-~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~----~ 167 (187)
+.+.+-+++ +++ +.+... +.+-.||.+++.|.. .+++|++.+-.-+.. ........+.|... .
T Consensus 325 ~~~~~W~PQ-~~l-L~hp~v~~fitHgG~~s~~Ea~---------~~gvP~l~~P~~~DQ-~~na~~~~~~G~g~~l~~~ 392 (500)
T PF00201_consen 325 VLIVKWLPQ-NDL-LAHPRVKLFITHGGLNSTQEAL---------YHGVPMLGIPLFGDQ-PRNAARVEEKGVGVVLDKN 392 (500)
T ss_dssp EEEESS--H-HHH-HTSTTEEEEEES--HHHHHHHH---------HCT--EEE-GCSTTH-HHHHHHHHHTTSEEEEGGG
T ss_pred EEEeccccc-hhh-hhcccceeeeeccccchhhhhh---------hccCCccCCCCcccC-CccceEEEEEeeEEEEEec
Confidence 345555553 455 445554 556689999988876 369999998665552 13334455555321 1
Q ss_pred CCCHHHHHHHHHh
Q 029797 168 HQTLKNLFKNLRS 180 (187)
Q Consensus 168 ~~t~~e~v~~l~~ 180 (187)
.=|.+++.+.|++
T Consensus 393 ~~~~~~l~~ai~~ 405 (500)
T PF00201_consen 393 DLTEEELRAAIRE 405 (500)
T ss_dssp C-SHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 2356666666654
No 341
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=25.65 E-value=1.7e+02 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=19.2
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCC
Q 029797 19 FCGSSTGKRNCYSDAAIDLAHELVARR--LDLVYGGG 53 (187)
Q Consensus 19 fggs~~~~~~~~~~~A~~lG~~la~~g--~~lv~GGg 53 (187)
||||...+.+...+.+.++.+.. +.| ..+|.||+
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~viV~sg~ 41 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKAV-KKGYQVVVVVSAM 41 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 78888764444555555555433 333 44667753
No 342
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=25.50 E-value=1.4e+02 Score=25.63 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=21.8
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeC
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p 77 (187)
...+|+|+|.-|. ++.+-|+..|..++.+..
T Consensus 167 ~~VlV~G~g~iG~--~a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAH--LTAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHH--HHHHHHHHCCCeEEEEeC
Confidence 4667888754443 466778888888888754
No 343
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=25.35 E-value=2.3e+02 Score=25.19 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCc-eEeecC--CHHHHHHHH
Q 029797 30 YSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG-EVRPVA--DMHQRKAEM 106 (187)
Q Consensus 30 ~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~-~~~~~~--~m~~R~~~m 106 (187)
..+..+.+++..-...+.+|.|+|+ +-..+++.-.+.|-.++.|-.+...-.+....... .++..+ +...-++.-
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~ 294 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEG 294 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcC
Confidence 3344444444322347788999875 44556665556677887774322111111111111 222222 334444455
Q ss_pred HHhCCEEEEeCCCh
Q 029797 107 ARHSDCFIALPGGY 120 (187)
Q Consensus 107 ~~~sDa~IvlpGG~ 120 (187)
+..+|++|++.+.-
T Consensus 295 ~~~a~~vi~~~~~~ 308 (453)
T PRK09496 295 IDEADAFIALTNDD 308 (453)
T ss_pred CccCCEEEECCCCc
Confidence 77899999988764
No 344
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.24 E-value=1.2e+02 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 345
>PRK07035 short chain dehydrogenase; Provisional
Probab=25.00 E-value=1.1e+02 Score=24.54 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++|.|.|+++. ....+++.|+++|+.|+--+
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 36777776642 34566777777888776444
No 346
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=24.98 E-value=5.1e+02 Score=23.25 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcC--CeEEEEeCc
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGG--GNVIGIIPR 78 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~g--G~viGI~p~ 78 (187)
..+.++-+.+..+--.+|.+.|.+|.+..++++.++.. -+++||-|.
T Consensus 158 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~ 206 (454)
T TIGR01137 158 GTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPE 206 (454)
T ss_pred hhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 34444444442222455666666799999999888754 488999773
No 347
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=24.94 E-value=69 Score=26.32 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=27.5
Q ss_pred CCH-HHHHHHHHHhCCEEEEeCCChhhHHHHHHH
Q 029797 97 ADM-HQRKAEMARHSDCFIALPGGYGTLEELLEV 129 (187)
Q Consensus 97 ~~m-~~R~~~m~~~sDa~IvlpGG~GTL~El~~a 129 (187)
+-| .+|.+++....|-|++---|+||.+|.|.+
T Consensus 64 srmllqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 64 SRMLLQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred hHHHHhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 344 689999999999998877789999998864
No 348
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=24.90 E-value=56 Score=29.70 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=15.3
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCCeEEEE
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG~viGI 75 (187)
.+|-|||+.|+|.|..- .+.|-.|+=+
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~vl 29 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVLVL 29 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EEEE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEEEE
Confidence 46779999999988765 3444444433
No 349
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=24.77 E-value=4.6e+02 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCcccHHH
Q 029797 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLMG 59 (187)
Q Consensus 28 ~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~ 59 (187)
|...+.+..+++.|.+.|...++|.|..|.+.
T Consensus 46 ~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la 77 (299)
T PRK05441 46 PQIAAAVDAAAAALRQGGRLIYIGAGTSGRLG 77 (299)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHH
Confidence 34445566777888777888899988877654
No 350
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=24.65 E-value=1.4e+02 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC--CcccHHHHHHHHHHh
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG--GSIGLMGLVSKAVHH 67 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG--g~~GlM~a~~~gA~~ 67 (187)
++|++||.+....+++|++...+-.+.+-..+..++ |. + +|-|........+
T Consensus 68 KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~l-g~f~C-qGk~~~~~~e~~~ 121 (160)
T PF12641_consen 68 KKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEIL-GTFMC-QGKMDPKVIEKYK 121 (160)
T ss_pred CeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeec-ceEEe-CCcCCHHHHHHHH
Confidence 578888887777677777766665555544443332 22 2 2555544444443
No 351
>PLN02740 Alcohol dehydrogenase-like
Probab=24.62 E-value=3.6e+02 Score=23.51 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=42.7
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCC-eEEEEeCccccccccc-CCCCceEeecC----CHHHHHHHHHH-hCCEEEEeC
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEIT-GETVGEVRPVA----DMHQRKAEMAR-HSDCFIALP 117 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG-~viGI~p~~~~~~e~~-~~~~~~~~~~~----~m~~R~~~m~~-~sDa~Ivlp 117 (187)
...+|+|+|.-|+ ++.+-|+..|. .|+.+..+.. ..+.. .-+.+.++-.. ++.++-..+.. ..|+++=..
T Consensus 200 ~~VlV~G~G~vG~--~a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGL--AVAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHH--HHHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 4567888654443 45667777887 5888743221 01111 11122232222 13222222221 368888778
Q ss_pred CChhhHHHHHHHH
Q 029797 118 GGYGTLEELLEVI 130 (187)
Q Consensus 118 GG~GTL~El~~a~ 130 (187)
|+..++.+.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 8777777776554
No 352
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=24.47 E-value=1.7e+02 Score=21.58 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
+.|+|++. ..+... ...|..++..||+++..+
T Consensus 1 k~i~v~s~-~~g~G~--t~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWSP-KGGVGK--TTLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEES-STTSSH--HHHHHHHHHHHHHTTT-E
T ss_pred CEEEEECC-CCCCCH--HHHHHHHHHHHHhcCCCe
Confidence 35788853 323222 356889999999987543
No 353
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.42 E-value=2.9e+02 Score=20.65 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCC
Q 029797 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGG 70 (187)
Q Consensus 28 ~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG 70 (187)
+...+.+..+.+.+.+.|...++|.|..+ ..+..-+.+.++
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~--~~a~~~~~~~~~ 59 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSA--AIASHFAADLGG 59 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHH--HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhh--hHHHHHHHHHhc
Confidence 45566777777777777777788876533 335555666554
No 354
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=24.37 E-value=4.6e+02 Score=22.58 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV 93 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~ 93 (187)
-++=|++.++.-- |+-++ ..+-++.|.+.|+.+.- +..=+-.+++.-.+.|-. .|.|-. .|-. .+.++.
T Consensus 101 iKlEVi~d~~tLl-PD~~e-tl~Aae~Lv~eGF~VlP---Y~~dD~v~arrLee~Gca--avMPl~-aPIG-Sg~G~~-- 169 (262)
T COG2022 101 IKLEVIGDEKTLL-PDPIE-TLKAAEQLVKEGFVVLP---YTTDDPVLARRLEEAGCA--AVMPLG-APIG-SGLGLQ-- 169 (262)
T ss_pred EEEEEecCCcccC-CChHH-HHHHHHHHHhCCCEEee---ccCCCHHHHHHHHhcCce--Eecccc-cccc-CCcCcC--
Confidence 3667777666432 33222 34466777889998852 223355677777777753 444421 1110 010100
Q ss_pred eecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 94 RPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 94 ~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
+ ..=-+++++.+|+-|++=-|+||.+...+++.| +.--+++|.
T Consensus 170 ----n-~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl------G~DaVL~NT 212 (262)
T COG2022 170 ----N-PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 212 (262)
T ss_pred ----C-HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc------ccceeehhh
Confidence 0 223567889999999999999999999999976 344556554
No 355
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=24.24 E-value=2.2e+02 Score=21.77 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=34.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC---c-ccHHHHHHHHHHhcC
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGG---S-IGLMGLVSKAVHHGG 69 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg---~-~GlM~a~~~gA~~~g 69 (187)
+++|.++|....+..| +|+.+.+.++..++.+-+.|- . .++..-+.+-..+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~G 58 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHG 58 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcC
Confidence 4689999988877644 578888888777777776661 1 234444555444544
No 356
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.20 E-value=1.2e+02 Score=24.24 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++|.|.|+++. ....+++.++++|+.++--+
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEc
Confidence 36777766541 24556666677888776444
No 357
>PRK11761 cysM cysteine synthase B; Provisional
Probab=24.17 E-value=4.5e+02 Score=22.42 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcC--CeEEEEeCc
Q 029797 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGG--GNVIGIIPR 78 (187)
Q Consensus 32 ~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~g--G~viGI~p~ 78 (187)
..+.++-+.+...-..+|.+.|.+|++..++++.++.+ -+++||-|.
T Consensus 155 t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~ 203 (296)
T PRK11761 155 TTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPE 203 (296)
T ss_pred chHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 34444444432121335555556799999999998754 489999874
No 358
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=24.13 E-value=2.3e+02 Score=20.65 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=28.9
Q ss_pred hCCCCCcEEEEcCCCC--c-hHHHHHhHHhCCCcCCC------CCHHHHHHHHH
Q 029797 135 LGIHDKPVCVANKPKS--P-LMMALSSLLSATSLSQH------QTLKNLFKNLR 179 (187)
Q Consensus 135 lg~~~kPvill~~~g~--~-l~~~~~~~~~~~~i~~~------~t~~e~v~~l~ 179 (187)
++.+-+|++.++.+|- . +.+.-+.|-.+.+|... ++.+|+.+.|-
T Consensus 14 ~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~ 67 (97)
T PRK10343 14 LAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIV 67 (97)
T ss_pred hcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHH
Confidence 3345799999999998 2 34445667777777542 44555555544
No 359
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=24.10 E-value=77 Score=27.90 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCCeEEEEeC
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p 77 (187)
.||-|+|..|++.|. .|.++|-+|+-|--
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lvek 30 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVEK 30 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEES
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEEe
Confidence 477899988887665 57778888888853
No 360
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.66 E-value=90 Score=25.97 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHH-hCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQ-LGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLR 179 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~-lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~ 179 (187)
.+....+..+|.+|+++ -..+ +.-++.+.. ....+.|+|++|.+..++... ..+....+.+|++..|-
T Consensus 169 ~~a~~~~~~~dl~lviG-Tsl~---V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~-------~~~~i~~~~~~~l~~l~ 237 (242)
T PRK00481 169 DEAYEALEEADLFIVIG-TSLV---VYPAAGLPYEAREHGAKTVEINLEPTPLDSL-------FDLVIHGKAGEVVPELV 237 (242)
T ss_pred HHHHHHHhcCCEEEEEC-CCce---EcCHhHHHHHHHHCCCeEEEECCCCCCCCCc-------cCEEEECCHHHHHHHHH
Confidence 45556667899999976 2222 222222221 124689999999986543211 23455578888888774
Q ss_pred h
Q 029797 180 S 180 (187)
Q Consensus 180 ~ 180 (187)
+
T Consensus 238 ~ 238 (242)
T PRK00481 238 E 238 (242)
T ss_pred H
Confidence 4
No 361
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=23.64 E-value=3.1e+02 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=11.0
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 82 ~~~D~IIavGGGS 94 (357)
T cd08181 82 FNADFVIGIGGGS 94 (357)
T ss_pred cCCCEEEEeCCch
Confidence 4579999999994
No 362
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=23.56 E-value=63 Score=27.70 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=20.6
Q ss_pred HHHHHHHCCCeEEEcCCcccHHHHHHHHHHh
Q 029797 37 LAHELVARRLDLVYGGGSIGLMGLVSKAVHH 67 (187)
Q Consensus 37 lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~ 67 (187)
|++.|+.+.+.||-+|| |.=++++-|+++
T Consensus 2 lar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 2 LARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred hhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 67788888888877774 666666666654
No 363
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=23.47 E-value=3.9e+02 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=20.0
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
.+|++|+++||+ .--+.-+.+. ..++|+|.+-+.
T Consensus 80 ~~d~IIaIGGGs--~~D~aK~vA~----~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGSGT--INDITKYVSY----KTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECCcH--HHHHHHHHHH----hcCCCEEEecCc
Confidence 799999999984 1112222222 136787776654
No 364
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.46 E-value=4.7e+02 Score=22.36 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=19.9
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeC
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p 77 (187)
...++.|| . |.+-.+++ ....+-.++||-.
T Consensus 59 d~vi~iGG-D-GTlL~a~~-~~~~~~pi~gIn~ 88 (277)
T PRK03708 59 DFIIAIGG-D-GTILRIEH-KTKKDIPILGINM 88 (277)
T ss_pred CEEEEEeC-c-HHHHHHHH-hcCCCCeEEEEeC
Confidence 45556565 5 88877777 6666667777744
No 365
>PRK06756 flavodoxin; Provisional
Probab=23.43 E-value=1.9e+02 Score=21.62 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhcCCeEEE
Q 029797 57 LMGLVSKAVHHGGGNVIG 74 (187)
Q Consensus 57 lM~a~~~gA~~~gG~viG 74 (187)
......+...+.|..+++
T Consensus 102 a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 102 AVDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHHHHHCCCEEcC
Confidence 334444444456766655
No 366
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.42 E-value=3.1e+02 Score=27.04 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 30 YSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 30 ~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
+...+.-+...++..|+.+++|++. --.+.+++.|.+.+..+++|.
T Consensus 595 H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvlc 640 (714)
T PRK09426 595 HDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGVS 640 (714)
T ss_pred hhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 5556666677778899999988765 456788899999999999984
No 367
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.41 E-value=1.2e+02 Score=25.89 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=11.3
Q ss_pred HHHHHHHHHHCCCeEEEcC
Q 029797 34 AIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 34 A~~lG~~la~~g~~lv~GG 52 (187)
.+++++.|+++|+.|+.-+
T Consensus 27 G~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 27 GLGLARRLAAAGAEVILPV 45 (313)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3455556666777765444
No 368
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=23.39 E-value=2.1e+02 Score=26.02 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHHH-----C-CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccc
Q 029797 27 RNCYSDAAIDLAHELVA-----R-RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL 80 (187)
Q Consensus 27 ~~~~~~~A~~lG~~la~-----~-g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~ 80 (187)
+|++.+.-.++-+.|.. + ...++.|.|. +.|||+.....+-|.+|+-+....+
T Consensus 33 s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt-~amEAav~sl~~pgdkVLv~~nG~F 91 (383)
T COG0075 33 SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGT-LAMEAAVASLVEPGDKVLVVVNGKF 91 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcH-HHHHHHHHhccCCCCeEEEEeCChH
Confidence 56666666655555532 3 3445778875 9999999999999999988876544
No 369
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.35 E-value=1.3e+02 Score=24.02 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv 49 (187)
++|.|.|+++ -....+.+.++++|+.++
T Consensus 2 ~~vlItGas~--------giG~~~a~~l~~~G~~Vi 29 (243)
T PRK07102 2 KKILIIGATS--------DIARACARRYAAAGARLY 29 (243)
T ss_pred cEEEEEcCCc--------HHHHHHHHHHHhcCCEEE
Confidence 4566666544 123445555566676654
No 370
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.30 E-value=3e+02 Score=20.10 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHH---hcCC-eEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHh
Q 029797 34 AIDLAHELVARRLDLVYGGGSIGLMGLVSKAVH---HGGG-NVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARH 109 (187)
Q Consensus 34 A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~---~~gG-~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~ 109 (187)
..++++.+.+.....++|-| +-...+..++. +.+. .+.++.. .|..+ -...++..
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G--~s~~~a~e~~~kl~e~~~i~~~~~~~-----~e~~h--------------g~~~~~~~ 61 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRG--PNYGTALEGALKLKETSYIHAEAYSA-----GEFKH--------------GPIALVDE 61 (153)
T ss_pred HHHHHHHHhccCcEEEEcCC--CCHHHHHHHHHHHHHHHhhcceeccH-----HHhcc--------------ChhhhccC
Confidence 35566677777777777765 34444445444 3332 2222211 11111 12334566
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCC
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKP 148 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~ 148 (187)
.|.+|++-..-.|-+++..+....+ ..+.|++++...
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~~--~~~~~vi~it~~ 98 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEVK--ARGAKVIVITDD 98 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHHH--HcCCEEEEEecC
Confidence 6777777644466666665554322 346777766544
No 371
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.28 E-value=3.9e+02 Score=21.36 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccccccc
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE 84 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e 84 (187)
+++.|.|+++ -....+++.|+++|+.|+..+....-.+...+...+.++.+..+..+...+.+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 72 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQ 72 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHH
No 372
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.28 E-value=2.8e+02 Score=24.78 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=16.2
Q ss_pred eEEEcCCcccHHHHHHHHHHhcCCeEEEEeC
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p 77 (187)
.+|+|+|+.|+ ++++...+.|-.|+++-+
T Consensus 8 v~iiG~g~~G~--~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 8 VLVVGAGVSGL--ALAKFLKKLGAKVILTDE 36 (450)
T ss_pred EEEECCCHHHH--HHHHHHHHCCCEEEEEeC
Confidence 34556665442 555555666666666543
No 373
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.26 E-value=1.9e+02 Score=22.06 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 029797 33 AAIDLAHELVA 43 (187)
Q Consensus 33 ~A~~lG~~la~ 43 (187)
.+..+-++|.+
T Consensus 65 ~~~~f~~~L~~ 75 (146)
T PRK09004 65 NLQPFFEELQE 75 (146)
T ss_pred hHHHHHHHHHh
Confidence 35556555543
No 374
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.19 E-value=4.2e+02 Score=21.71 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=46.5
Q ss_pred EEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCC-ceEeecC--CHHHHHHHHHHhCCEEEEeCCChhhHH
Q 029797 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETV-GEVRPVA--DMHQRKAEMARHSDCFIALPGGYGTLE 124 (187)
Q Consensus 48 lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~-~~~~~~~--~m~~R~~~m~~~sDa~IvlpGG~GTL~ 124 (187)
++-|+|+-| ..+++.-.+.|-.|+.|--+...-.+.....+ ...+..+ +-..=++.=+..+|++|+.-|--
T Consensus 4 iIiG~G~vG--~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d---- 77 (225)
T COG0569 4 IIIGAGRVG--RSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND---- 77 (225)
T ss_pred EEECCcHHH--HHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC----
Confidence 455665533 35566666666667776433322222122112 2233222 22211222267799999998752
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 125 ELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 125 El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
|.-.+++.......+.|-++.....-
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 33333333333334666666555444
No 375
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=23.15 E-value=87 Score=27.25 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHh
Q 029797 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHH 67 (187)
Q Consensus 35 ~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~ 67 (187)
..|+++|..+.+.||-+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4578888888899987774 666666666654
No 376
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.13 E-value=3.5e+02 Score=23.70 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=10.5
Q ss_pred hCCEEEEeCCCh
Q 029797 109 HSDCFIALPGGY 120 (187)
Q Consensus 109 ~sDa~IvlpGG~ 120 (187)
.+|++|+++||+
T Consensus 77 ~~D~IIavGGGs 88 (367)
T cd08182 77 GPDAVLAVGGGS 88 (367)
T ss_pred CcCEEEEeCCcH
Confidence 589999999993
No 377
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.10 E-value=1.3e+02 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=17.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 51 (187)
++.|.|+++ + ..+.+++.|+++|+.|+.-
T Consensus 10 ~~lItGas~-g-------IG~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 10 LAFTTASSK-G-------IGFGVARVLARAGADVILL 38 (263)
T ss_pred EEEEeCCCC-c-------HHHHHHHHHHHCCCEEEEE
Confidence 566666554 2 2355666667777776543
No 378
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.08 E-value=5.5e+02 Score=23.00 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=11.2
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4699999999994
No 379
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.08 E-value=2e+02 Score=23.27 Aligned_cols=12 Identities=17% Similarity=-0.153 Sum_probs=5.9
Q ss_pred HHHhCCEEEEeC
Q 029797 106 MARHSDCFIALP 117 (187)
Q Consensus 106 m~~~sDa~Ivlp 117 (187)
..-+||.+...|
T Consensus 149 ~~~Hs~~v~~~~ 160 (209)
T PRK13146 149 YFVHSYYAQPAN 160 (209)
T ss_pred EEEeEEEEEcCC
Confidence 334566555444
No 380
>PRK07677 short chain dehydrogenase; Provisional
Probab=22.97 E-value=1.4e+02 Score=23.99 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++.|.|+++. ....+++.++++|+.|+.-.
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 5677776652 34566677777888775443
No 381
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=22.94 E-value=3.8e+02 Score=23.43 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=10.9
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 79 ~~~d~IiaiGGGs 91 (370)
T cd08551 79 EGCDGVIAVGGGS 91 (370)
T ss_pred cCCCEEEEeCCch
Confidence 3589999999983
No 382
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=22.87 E-value=1.7e+02 Score=25.76 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHhCCEEEEeC--CChhhHHHHHHHHHHHHhC--CCCCcEEEEcCCCCchHHHHHhHH---hC----C-CcCCCCCHHHH
Q 029797 107 ARHSDCFIALP--GGYGTLEELLEVITWAQLG--IHDKPVCVANKPKSPLMMALSSLL---SA----T-SLSQHQTLKNL 174 (187)
Q Consensus 107 ~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg--~~~kPvill~~~g~~l~~~~~~~~---~~----~-~i~~~~t~~e~ 174 (187)
-.+-|.+++-| |..=..+++-+.....+.. ..+..|++++.-..=-......|+ +. . ++-.+++++.+
T Consensus 71 g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~l 150 (325)
T PRK06871 71 GNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAAL 150 (325)
T ss_pred CCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhC
Confidence 34566665555 2233577887766555544 235667766544331111222222 22 1 33345889999
Q ss_pred HHHHHhhcccc
Q 029797 175 FKNLRSTCLCM 185 (187)
Q Consensus 175 v~~l~~~~~~~ 185 (187)
+.-|+|+|...
T Consensus 151 lpTI~SRC~~~ 161 (325)
T PRK06871 151 LPTIYSRCQTW 161 (325)
T ss_pred chHHHhhceEE
Confidence 99999999754
No 383
>PRK13059 putative lipid kinase; Reviewed
Probab=22.84 E-value=1.9e+02 Score=24.61 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=22.4
Q ss_pred eEEEcCCcccHHHHHHHHHHhcC-CeEEEEeC
Q 029797 47 DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIP 77 (187)
Q Consensus 47 ~lv~GGg~~GlM~a~~~gA~~~g-G~viGI~p 77 (187)
.|+.-||. |.-..++.+....+ ...+||+|
T Consensus 59 ~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP 89 (295)
T PRK13059 59 YILIAGGD-GTVDNVVNAMKKLNIDLPIGILP 89 (295)
T ss_pred EEEEECCc-cHHHHHHHHHHhcCCCCcEEEEC
Confidence 34445555 99999999988664 46799999
No 384
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=22.73 E-value=3.3e+02 Score=23.33 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=17.2
Q ss_pred CCeEEEcCCcccHHHHHHHHHHh-cC-CeEEEEeC
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHH-GG-GNVIGIIP 77 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~-~g-G~viGI~p 77 (187)
...+|+|+|.-|++-+ .-|+. .| .+++.+.+
T Consensus 165 ~~VlV~G~G~vGl~~~--~~a~~~~g~~~vi~~~~ 197 (341)
T cd08237 165 NVIGVWGDGNLGYITA--LLLKQIYPESKLVVFGK 197 (341)
T ss_pred CEEEEECCCHHHHHHH--HHHHHhcCCCcEEEEeC
Confidence 3556888766565533 33333 33 46777754
No 385
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.69 E-value=1.3e+02 Score=26.88 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=11.3
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 78 ~~~D~IIaiGGGS 90 (386)
T cd08191 78 AGPDVIIGLGGGS 90 (386)
T ss_pred cCCCEEEEeCCch
Confidence 5689999999994
No 386
>PLN03013 cysteine synthase
Probab=22.63 E-value=6.1e+02 Score=23.38 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=25.5
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCC--eEEEEeCcc
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGG--NVIGIIPRT 79 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG--~viGI~p~~ 79 (187)
-.+|.+.|.+|+...++++.++..- +++||-|..
T Consensus 282 D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~g 317 (429)
T PLN03013 282 DIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTE 317 (429)
T ss_pred CEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCC
Confidence 3455566667999999999998543 699998743
No 387
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.60 E-value=2.2e+02 Score=22.99 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
+.-...|++|+.+.....+.++...+ ...++|+++++.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~-----~~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAA-----KAAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHH-----HHCCCCEEEecC
Confidence 34456899998875544333433222 134789998875
No 388
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=22.58 E-value=3.4e+02 Score=22.36 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCCe-EEEEeCcccccccccC-CCCceEeecCCHHHHHHHHH--HhCCEEEEeCCCh
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGGN-VIGIIPRTLMNKEITG-ETVGEVRPVADMHQRKAEMA--RHSDCFIALPGGY 120 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG~-viGI~p~~~~~~e~~~-~~~~~~~~~~~m~~R~~~m~--~~sDa~IvlpGG~ 120 (187)
...+|+|+|.-|++ +.+-|+..|.. ++.+..+.. ..+... ...+.++........-..+. ...|.++=..|+.
T Consensus 122 ~~VlV~G~G~vG~~--~~~~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLT--AAAAAAAAGAARVVAADPSPD-RRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCEEEEECCCHH-HHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 45678877544443 45667777876 666632211 111111 11122222222111111111 1368888888888
Q ss_pred hhHHHHHHHH
Q 029797 121 GTLEELLEVI 130 (187)
Q Consensus 121 GTL~El~~a~ 130 (187)
.++++....+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 8888887665
No 389
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.56 E-value=3e+02 Score=24.36 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.6
Q ss_pred HHhCCEEEEeCCCh
Q 029797 107 ARHSDCFIALPGGY 120 (187)
Q Consensus 107 ~~~sDa~IvlpGG~ 120 (187)
-..+|++|+++||+
T Consensus 81 ~~~~d~IIaiGGGS 94 (374)
T cd08189 81 ENGCDAILAVGGGS 94 (374)
T ss_pred hcCCCEEEEeCCcc
Confidence 35689999999994
No 390
>PRK08177 short chain dehydrogenase; Provisional
Probab=22.52 E-value=1.5e+02 Score=23.38 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=18.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~G 51 (187)
++|.|.|+++ -....+++.|+++|+.|+.-
T Consensus 2 k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~ 31 (225)
T PRK08177 2 RTALIIGASR--------GLGLGLVDRLLERGWQVTAT 31 (225)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHhCCCEEEEE
Confidence 4677776654 13455666667777776543
No 391
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.41 E-value=89 Score=27.10 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCeE-----EEcCCcccHH------------HHHHHHHHhcCCeEEEEeCcccccccccCCC
Q 029797 27 RNCYSDAAIDLAHELVARRLDL-----VYGGGSIGLM------------GLVSKAVHHGGGNVIGIIPRTLMNKEITGET 89 (187)
Q Consensus 27 ~~~~~~~A~~lG~~la~~g~~l-----v~GGg~~GlM------------~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~ 89 (187)
.++-.+..+++.+.....|..| ..||...|+. +.+.+-+.+-|-..+.|.-... |=.
T Consensus 109 ~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~------HG~ 182 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTA------HGM 182 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSB------SSS
T ss_pred HHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcc------ccc
Confidence 3455577777777777767655 1233222322 3444545555555555532211 100
Q ss_pred CceEeecCCH-HHHHHHHHHhC-CEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 90 VGEVRPVADM-HQRKAEMARHS-DCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 90 ~~~~~~~~~m-~~R~~~m~~~s-Da~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
|... ..+.+ .+|-..+-+.. +.-+||.||+|+-+|-+.-.. +.| |.=+|.+-.
T Consensus 183 y~~~-~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai--~~G-----i~KiNi~T~ 237 (287)
T PF01116_consen 183 YKGG-KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAI--KNG-----ISKINIGTE 237 (287)
T ss_dssp BSSS-SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHH--HTT-----EEEEEESHH
T ss_pred cCCC-CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHH--HcC-----ceEEEEehH
Confidence 1000 11234 67888888888 999999999999998765542 334 444565544
No 392
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=22.37 E-value=1.8e+02 Score=23.46 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=23.1
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
++....|++|+.|......++....+ ...+.|+++++.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~-----~~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEA-----KAAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHH-----HHCCCCEEEEec
Confidence 44456899999886544333433222 134789998875
No 393
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=22.36 E-value=5.2e+02 Score=22.48 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCEEEEeCC-Chh--hHHHHHHHHHHHH-hC-CCCCcEEEEcC
Q 029797 100 HQRKAEMARHSDCFIALPG-GYG--TLEELLEVITWAQ-LG-IHDKPVCVANK 147 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpG-G~G--TL~El~~a~~~~~-lg-~~~kPvill~~ 147 (187)
+.--..+.+.++.-|+-.| |.+ -.+.|..++|+.+ .| ..++.|.+++.
T Consensus 112 ~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD 164 (305)
T PRK00856 112 SGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGD 164 (305)
T ss_pred hHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 3334445555665555554 222 2345555555543 24 34566666654
No 394
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=22.25 E-value=1.5e+02 Score=23.79 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=43.3
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHh-------CCCCCcEEEEcCCCC--------c----hH--------HHHHhHHh
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQL-------GIHDKPVCVANKPKS--------P----LM--------MALSSLLS 161 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~l-------g~~~kPvill~~~g~--------~----l~--------~~~~~~~~ 161 (187)
.+|++|+.|=-..|+.-+..-++-..+ ...++|++++-.... + +. +..+.|.+
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L~~ 157 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKLAQ 157 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHHhh
Confidence 379999999999999988754432221 135899988654322 1 11 44455555
Q ss_pred CCCcCCCCCHHHHHHH
Q 029797 162 ATSLSQHQTLKNLFKN 177 (187)
Q Consensus 162 ~~~i~~~~t~~e~v~~ 177 (187)
-.-+...++|+|+.+.
T Consensus 158 ~~gv~v~~~~~~~~~~ 173 (174)
T TIGR02699 158 MEGIEILTKPEDIYKI 173 (174)
T ss_pred CCCeEEECCHHHHHhh
Confidence 4344556888887664
No 395
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=22.24 E-value=2.6e+02 Score=25.01 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=35.0
Q ss_pred CEEEEeCC---ChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 111 DCFIALPG---GYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 111 Da~IvlpG---G~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
|++ ++|- |+|.. +.|+++. ++|||.-+..|.+ +++++- ..|++-...|++++.+.|.+
T Consensus 342 Dv~-v~pS~~E~fg~~--~lEAma~------G~PvV~s~~gg~~--eiv~~~-~~G~lv~~~d~~~la~~i~~ 402 (439)
T TIGR02472 342 GIF-VNPALTEPFGLT--LLEAAAC------GLPIVATDDGGPR--DIIANC-RNGLLVDVLDLEAIASALED 402 (439)
T ss_pred CEE-ecccccCCcccH--HHHHHHh------CCCEEEeCCCCcH--HHhcCC-CcEEEeCCCCHHHHHHHHHH
Confidence 665 4453 44432 5666643 8999999887653 222221 23666666788887777654
No 396
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.20 E-value=69 Score=27.70 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=17.4
Q ss_pred cccccccCCCCcceEEEEcCCC
Q 029797 2 EMEGKIQKNSRFKRVCVFCGSS 23 (187)
Q Consensus 2 ~~~~~~~~~~~~~~I~Vfggs~ 23 (187)
.++..+|..++.++|+||+|.+
T Consensus 78 ~l~i~i~~~~~~~ri~vl~Sg~ 99 (286)
T PRK13011 78 GMQWELHDPAARPKVLIMVSKF 99 (286)
T ss_pred CcEEEEeecccCceEEEEEcCC
Confidence 3566788888888999998775
No 397
>PRK08589 short chain dehydrogenase; Validated
Probab=22.16 E-value=1.3e+02 Score=24.68 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
+++.|.|+++ + ..+.+++.++++|+.++.-+....+ +...+...+.++.+..+.
T Consensus 7 k~vlItGas~-g-------IG~aia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGAST-G-------IGQASAIALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEE
Confidence 3677777665 2 3466777778889888765433111 222222233455555553
No 398
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.05 E-value=1.1e+02 Score=24.38 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=4.6
Q ss_pred HHhCCEEEEe
Q 029797 107 ARHSDCFIAL 116 (187)
Q Consensus 107 ~~~sDa~Ivl 116 (187)
+..||++++.
T Consensus 74 i~~adv~~I~ 83 (185)
T PF03721_consen 74 IKDADVVFIC 83 (185)
T ss_dssp HHH-SEEEE-
T ss_pred hhccceEEEe
Confidence 4557765544
No 399
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=22.04 E-value=1.2e+02 Score=22.72 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
++.|+-+|..++. .+.|+.+.+.+...|+.+
T Consensus 2 ~i~IiY~S~tGnT---e~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 2 RILLAYLSLSGNT---EEVAFMIQDYLQKDGHEV 32 (140)
T ss_pred eEEEEEECCCChH---HHHHHHHHHHHhhCCeeE
Confidence 4455556676652 256777777776655543
No 400
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.01 E-value=1.4e+02 Score=23.67 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++.|.|+++. ....+++.++++|+.++.-.
T Consensus 7 ~~lItG~~g~--------iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 7 VIVITGGAQG--------LGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred EEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 5777766541 23456666677777765433
No 401
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=22.00 E-value=1.2e+02 Score=24.80 Aligned_cols=122 Identities=25% Similarity=0.303 Sum_probs=55.1
Q ss_pred HHHHHHHHHHCCCeEEE-cCCcccHHHHHHHHHHhcCCeEEEEeCcc--c--ccccccCCCCceEeecCCHHHHHHHHHH
Q 029797 34 AIDLAHELVARRLDLVY-GGGSIGLMGLVSKAVHHGGGNVIGIIPRT--L--MNKEITGETVGEVRPVADMHQRKAEMAR 108 (187)
Q Consensus 34 A~~lG~~la~~g~~lv~-GGg~~GlM~a~~~gA~~~gG~viGI~p~~--~--~~~e~~~~~~~~~~~~~~m~~R~~~m~~ 108 (187)
|.-|.++-=+.|-.++. |+|. |-+..-.- ..-..++|+.|--+. . ..+......+..+.++.+-. -..+-.
T Consensus 24 al~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~~ 99 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALPD 99 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhcC
Confidence 44444433334555543 5554 66543332 334578999993111 0 01111122334444432221 112223
Q ss_pred h--CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHHhHHhCCC
Q 029797 109 H--SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALSSLLSATS 164 (187)
Q Consensus 109 ~--sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~~~~~~~~ 164 (187)
. .|+ |+++|| |+++++++++ |..+..-+ -++.|---- .+...++.|-+.|.
T Consensus 100 ~~~~da-iFIGGg-~~i~~ile~~-~~~l~~gg--rlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 100 LPSPDA-IFIGGG-GNIEEILEAA-WERLKPGG--RLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCCCE-EEECCC-CCHHHHHHHH-HHHcCcCC--eEEEEeecHHHHHHHHHHHHHcCC
Confidence 3 444 455666 9999999986 33332111 334443333 23334444444444
No 402
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.94 E-value=2.9e+02 Score=22.20 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=23.4
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
+.....|++|+.|.-...+.+....+ ...+.||++++.
T Consensus 56 l~~~~vDgiii~~~~~~~~~~~i~~~-----~~~gIpvV~~d~ 93 (274)
T cd06311 56 LINRKIDALVILPFESAPLTQPVAKA-----KKAGIFVVVVDR 93 (274)
T ss_pred HHHcCCCEEEEeCCCchhhHHHHHHH-----HHCCCeEEEEcC
Confidence 33346899999986544444543332 134789888764
No 403
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.94 E-value=1.4e+02 Score=24.23 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
+|.|.|+++. ...++.+.++++|+.|+-
T Consensus 7 ~vlItG~s~~--------iG~~ia~~l~~~G~~V~~ 34 (263)
T PRK09072 7 RVLLTGASGG--------IGQALAEALAAAGARLLL 34 (263)
T ss_pred EEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 5777776651 245566666777877643
No 404
>PRK12367 short chain dehydrogenase; Provisional
Probab=21.90 E-value=1.4e+02 Score=24.48 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=20.7
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
..+||||+. |+=.+.++...+.|..|+.+.
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 556777764 777777777777777776653
No 405
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.86 E-value=2.2e+02 Score=21.43 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l 48 (187)
+++|.-.+.+- .+.....|.++++.+++.|+.+
T Consensus 2 ~~~iv~~~~Py-~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGPAY-GTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCCCC-CCHHHHHHHHHHHHHHhCCCCe
Confidence 45555444543 4566789999999999998863
No 406
>PHA02448 hypothetical protein
Probab=21.77 E-value=94 Score=24.43 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCC
Q 029797 98 DMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSAT 163 (187)
Q Consensus 98 ~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~ 163 (187)
...+||.++-+..|++-++ ||+|-.-+..+ +| .-.|-.-|-.--.+.+|++++.+.|
T Consensus 133 avaernallhelgdacaal-----tldektvaaqf--yg--kykvtarnakpaqlrefiddlmeng 189 (192)
T PHA02448 133 AVAERNALLHELGDACAAL-----TLDEKTVAAQF--YG--KYKVTARNAKPAQLREFIDDLMENG 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHhh-----hcchHHHHHHh--hc--ceeeeeccCChHHHHHHHHHHHhcC
Confidence 4589999999999999877 89988766543 22 1222233332225778888888765
No 407
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=21.73 E-value=97 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEEcCCCCCC------ChH-HHHHHHHHHHHHHH-CCCeEEEcCCc
Q 029797 16 VCVFCGSSTGK------RNC-YSDAAIDLAHELVA-RRLDLVYGGGS 54 (187)
Q Consensus 16 I~Vfggs~~~~------~~~-~~~~A~~lG~~la~-~g~~lv~GGg~ 54 (187)
|-=||||.... +++ ..+.|+++.++... ....||.|||.
T Consensus 4 ViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~ 50 (231)
T cd04254 4 LLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGN 50 (231)
T ss_pred EEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCc
Confidence 33467777641 233 33444444443321 24567999976
No 408
>PRK08303 short chain dehydrogenase; Provisional
Probab=21.72 E-value=1.3e+02 Score=25.66 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
+.+.|.|+++ + ..+.+++.+++.|+.|+.-+
T Consensus 9 k~~lITGgs~-G-------IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATR-G-------AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEEe
Confidence 3677777665 2 23556666677888876543
No 409
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.70 E-value=3.2e+02 Score=24.14 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=11.2
Q ss_pred HhCCEEEEeCCCh
Q 029797 108 RHSDCFIALPGGY 120 (187)
Q Consensus 108 ~~sDa~IvlpGG~ 120 (187)
..+|++|+++||+
T Consensus 82 ~~~D~IIaiGGGs 94 (376)
T cd08193 82 AGADGVIGFGGGS 94 (376)
T ss_pred cCCCEEEEeCCch
Confidence 4689999999994
No 410
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.61 E-value=5.2e+02 Score=24.54 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=39.9
Q ss_pred CCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCcccHHH
Q 029797 10 NSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD------------------------------LVYGGGSIGLMG 59 (187)
Q Consensus 10 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~------------------------------lv~GGg~~GlM~ 59 (187)
..+.++|+|+. +. .++...+.+.++.++|.++|+. +|+=||. |-|=
T Consensus 287 ~~~~~~i~iv~--~~-~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-GT~L 362 (569)
T PRK14076 287 RIKPTKFGIVS--RI-DNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD-GTVL 362 (569)
T ss_pred ccCCcEEEEEc--CC-CCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc-HHHH
Confidence 34456799994 32 2456667888888888655542 2222345 7666
Q ss_pred HHHHHHHhcCCeEEEEeC
Q 029797 60 LVSKAVHHGGGNVIGIIP 77 (187)
Q Consensus 60 a~~~gA~~~gG~viGI~p 77 (187)
-+++-....+-.++||-.
T Consensus 363 ~aa~~~~~~~~PilGin~ 380 (569)
T PRK14076 363 RASKLVNGEEIPIICINM 380 (569)
T ss_pred HHHHHhcCCCCCEEEEcC
Confidence 666666666778888853
No 411
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=21.59 E-value=2.8e+02 Score=27.77 Aligned_cols=53 Identities=21% Similarity=0.066 Sum_probs=36.1
Q ss_pred CCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhC
Q 029797 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSA 162 (187)
Q Consensus 110 sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~ 162 (187)
.-+++|.+.+.||++-...++...+..-.+.--|++|..++.....++.++..
T Consensus 215 lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~ 267 (817)
T PLN02974 215 LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSN 267 (817)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhc
Confidence 46888889999999998877766554423333467776666556666666543
No 412
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=21.58 E-value=2.6e+02 Score=21.88 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCchHHHHHhHHhC---CCcCCCCCHHHHHHHHHh
Q 029797 139 DKPVCVANKPKSPLMMALSSLLSA---TSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 139 ~kPvill~~~g~~l~~~~~~~~~~---~~i~~~~t~~e~v~~l~~ 180 (187)
..||+++.....+ .......+. +++....+++++++.|+.
T Consensus 80 ~~~iIvls~~~~~--~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~ 122 (216)
T PRK10840 80 SLSIIVLTMNNNP--AILSAVLDLDIEGIVLKQGAPTDLPKALAA 122 (216)
T ss_pred CCcEEEEEecCCH--HHHHHHHHCCCeEEEECCCCHHHHHHHHHH
Confidence 5677777544332 223333333 455556677777776654
No 413
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.51 E-value=1.4e+02 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
+.+.|.|+++. ..+.+++.++++|+.|+.-+
T Consensus 9 k~~lItGas~g--------iG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 9 RVAVVTGGSSG--------IGLATVELLLEAGASVAICG 39 (265)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCeEEEEe
Confidence 36777776651 34567777778898876544
No 414
>PLN02271 serine hydroxymethyltransferase
Probab=21.50 E-value=1e+02 Score=29.76 Aligned_cols=38 Identities=34% Similarity=0.392 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCeEEEcCCc----------ccHHHHHHHHHHhcCC
Q 029797 33 AAIDLAHELVARRLDLVYGGGS----------IGLMGLVSKAVHHGGG 70 (187)
Q Consensus 33 ~A~~lG~~la~~g~~lv~GGg~----------~GlM~a~~~gA~~~gG 70 (187)
-|+.|++.|.++|+.||+||-. .|+.+..+...++.-+
T Consensus 443 NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~ 490 (586)
T PLN02271 443 NAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCH 490 (586)
T ss_pred HHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcC
Confidence 4566777888899999998732 3666777777776554
No 415
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.45 E-value=85 Score=26.88 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
.--+++.+.+|.-|++-+|+||.++..+++.+ +---+++|.
T Consensus 165 ~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp HHHHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 33566777889999999999999999999865 344566664
No 416
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.45 E-value=4.1e+02 Score=24.31 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=32.8
Q ss_pred EEEcCCCCCC-----ChHHHHHHHHHHHHHHHCCCe-EEEcCCcccHHHHHHHHHH---hcC--CeEEEE
Q 029797 17 CVFCGSSTGK-----RNCYSDAAIDLAHELVARRLD-LVYGGGSIGLMGLVSKAVH---HGG--GNVIGI 75 (187)
Q Consensus 17 ~Vfggs~~~~-----~~~~~~~A~~lG~~la~~g~~-lv~GGg~~GlM~a~~~gA~---~~g--G~viGI 75 (187)
++.|+||... +++.+ .++.+.|.+.++. ||+=||. |-|..+.+=+. +.| -.||||
T Consensus 73 t~LgssR~~~~~~~~~~~~~---~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 73 GALGSCRYKLKSLEEDRAEY---ERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred eEeccCCCCCcccccChHHH---HHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4778888653 23343 4445556565443 3444456 99988876443 355 688998
No 417
>PRK00358 pyrH uridylate kinase; Provisional
Probab=21.45 E-value=97 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEcCCCCCC------ChH-HHHHHHHHHHHHHHCC--CeEEEcCCc
Q 029797 17 CVFCGSSTGK------RNC-YSDAAIDLAHELVARR--LDLVYGGGS 54 (187)
Q Consensus 17 ~Vfggs~~~~------~~~-~~~~A~~lG~~la~~g--~~lv~GGg~ 54 (187)
-=||||.... +.+ ..+.|+++.+ +.+.| ..||.|||.
T Consensus 5 iK~GGs~l~~~~~~~~~~~~i~~~~~~i~~-~~~~g~~vvlV~gGG~ 50 (231)
T PRK00358 5 LKLSGEALAGEKGFGIDPEVLDRIAEEIKE-VVELGVEVAIVVGGGN 50 (231)
T ss_pred EEeccceecCCCCCCCCHHHHHHHHHHHHH-HHHCCCeEEEEECCCH
Confidence 3367777642 222 2233444443 33444 567999864
No 418
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=21.41 E-value=1.4e+02 Score=24.78 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=25.2
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeEEEcCCcc
Q 029797 16 VCVFCGSSTGKRNCYSDAAIDLAHELVAR--RLDLVYGGGSI 55 (187)
Q Consensus 16 I~Vfggs~~~~~~~~~~~A~~lG~~la~~--g~~lv~GGg~~ 55 (187)
|--||||.......+.+.++++....... ...||.|||+.
T Consensus 2 ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~ 43 (252)
T cd04249 2 VIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCV 43 (252)
T ss_pred EEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHH
Confidence 34478888753334556677777654443 34679999875
No 419
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=21.41 E-value=91 Score=23.01 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
++++|||..+..-.. |...++.+-+.|.+.|...+.
T Consensus 88 ~~~avfg~Gd~~~~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 88 KKYAVFGLGDSGYGG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp CEEEEEEEEETTSST-TTHHHHHHHHHHHHTTEEEES
T ss_pred ceeeeeecCCccchh-hhhHHHHHHHHHHHCCCEEEE
Confidence 356666432222112 667777777777777776664
No 420
>PRK06180 short chain dehydrogenase; Provisional
Probab=21.40 E-value=1.5e+02 Score=24.39 Aligned_cols=31 Identities=23% Similarity=-0.018 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++|.|.|+++ -..+.+.+.|+++|+.|+...
T Consensus 5 ~~vlVtGasg--------giG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSS--------GFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CEEEEecCCC--------hHHHHHHHHHHhCcCEEEEEe
Confidence 4688887765 234566667777888876554
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=21.39 E-value=3.7e+02 Score=24.62 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=39.6
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHH
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEE 125 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~E 125 (187)
..+|.|.|+-|.. +++-++..|..|+.+-++..........++ +.. .+. . .+..+|.+|-..|...++++
T Consensus 204 tVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~---~~~---e-~v~~aDVVI~atG~~~~i~~ 273 (413)
T cd00401 204 VAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPICALQAAMEGY-EVM---TME---E-AVKEGDIFVTTTGNKDIITG 273 (413)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEc---cHH---H-HHcCCCEEEECCCCHHHHHH
Confidence 4568898876654 455666778888776333211011111122 111 222 2 24678999999888887775
Q ss_pred H
Q 029797 126 L 126 (187)
Q Consensus 126 l 126 (187)
-
T Consensus 274 ~ 274 (413)
T cd00401 274 E 274 (413)
T ss_pred H
Confidence 3
No 422
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=21.37 E-value=5.7e+02 Score=22.50 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHH
Q 029797 101 QRKAEMARHSDCFIALPGG---YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMM 154 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG---~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~ 154 (187)
++-..++..=+|+|+=||= -+++-++..++.+. ...++|+++ +-||-+|.+
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~--~~~dvP~VI-DaDGL~Lv~ 146 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYL--RGKDVPLVI-DADGLWLVE 146 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHH--hcCCCcEEE-cCCceEehh
Confidence 4444577788898888863 57888888887653 346899876 677776543
No 423
>PRK07308 flavodoxin; Validated
Probab=21.33 E-value=1.2e+02 Score=22.70 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=16.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD 47 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~ 47 (187)
+|.|+-+|..++. .+.|+.+++.+.+.|+.
T Consensus 3 ~~~IvY~S~tGnT---e~iA~~ia~~l~~~g~~ 32 (146)
T PRK07308 3 LAKIVYASMTGNT---EEIADIVADKLRELGHD 32 (146)
T ss_pred eEEEEEECCCchH---HHHHHHHHHHHHhCCCc
Confidence 3455555666642 25566677666655543
No 424
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=21.27 E-value=1.7e+02 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~ 50 (187)
+++|.|+|++. ...+.+.+.|.++|+.|+.
T Consensus 17 ~~~ilItGasG--------~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 17 TKTVFVAGATG--------RTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred CCeEEEECCCc--------HHHHHHHHHHHhCCCEEEE
Confidence 45888887665 2345566666777887653
No 425
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.03 E-value=1.4e+02 Score=24.23 Aligned_cols=52 Identities=17% Similarity=0.024 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEE
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI 75 (187)
+++.|.|+++ -..+.+++.|+++|+.++.-+ +....+. .+...+.+..+..+
T Consensus 9 k~~lItGas~--------gIG~aia~~l~~~G~~vv~~~-~~~~~~~-~~~~~~~~~~~~~~ 60 (251)
T PRK12481 9 KVAIITGCNT--------GLGQGMAIGLAKAGADIVGVG-VAEAPET-QAQVEALGRKFHFI 60 (251)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEec-CchHHHH-HHHHHHcCCeEEEE
Confidence 4677777655 235667777788899887543 3333222 22223335555444
No 426
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=21.01 E-value=3.9e+02 Score=20.46 Aligned_cols=76 Identities=26% Similarity=0.309 Sum_probs=49.0
Q ss_pred HHHHHhcCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCc
Q 029797 62 SKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKP 141 (187)
Q Consensus 62 ~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kP 141 (187)
.-++..-||.++.+.|.... . . ..+++.+=-+.|-..+|++|+=.-.-+++.|+.+.. ++|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~---~-~-------k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSS---L-G-------KGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSS---T-T-------TSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECccccc---C-c-------CCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 34455679999998654321 0 0 122444434577778999999999999999997543 899
Q ss_pred EEEEcCCCC-chHHHH
Q 029797 142 VCVANKPKS-PLMMAL 156 (187)
Q Consensus 142 vill~~~g~-~l~~~~ 156 (187)
||=-..+.+ |.-.+.
T Consensus 119 VINa~~~~~HPtQaL~ 134 (142)
T PF02729_consen 119 VINAGDDHEHPTQALA 134 (142)
T ss_dssp EEEEEESSBSHHHHHH
T ss_pred eEcCcCCCCChHHHHH
Confidence 983333555 543333
No 427
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=20.96 E-value=68 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=19.3
Q ss_pred EEEeCCChhhHHHHH------HHHHHHHhCCCCCcEEEEcC
Q 029797 113 FIALPGGYGTLEELL------EVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 113 ~IvlpGG~GTL~El~------~a~~~~~lg~~~kPvill~~ 147 (187)
.|++|||.|....+. ..+.... .++|||..+..
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~--~~gK~iaAICh 135 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIY--ANGGVVAAVCH 135 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHH--HcCCEEEEECh
Confidence 568899988755433 2222111 35788876643
No 428
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=20.79 E-value=1e+02 Score=25.63 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHH
Q 029797 100 HQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKN 177 (187)
Q Consensus 100 ~~R~~~m~~~sDa~IvlpGG--~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~ 177 (187)
..+....++.||.+||++=. +-....+... . .++.|++++|.+--+... +.. -......+.+|++..
T Consensus 166 ~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~---~---~~~~~~v~iN~~~~~~~~--~~~---~d~~~~~~~~~~l~~ 234 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTSLKVAPFASLPSR---V---PSEVPRVLINREPVGHLG--KRP---FDVALLGDCDDGVRE 234 (235)
T ss_pred HHHHHHHHhcCCEEEEECCCCeeccHHHHHHH---H---hCCCcEEEEeCCCCCCCC--CCC---cCEEEeCCHHHHHHh
Confidence 35555667889999997533 2333322221 1 246899999977443210 011 123344667776654
Q ss_pred H
Q 029797 178 L 178 (187)
Q Consensus 178 l 178 (187)
|
T Consensus 235 ~ 235 (235)
T cd01408 235 L 235 (235)
T ss_pred C
Confidence 3
No 429
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=20.78 E-value=1.4e+02 Score=26.64 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=31.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHH
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKA 64 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~g 64 (187)
+++|+|+|+.+.++ .|+..++++||.+.--+-...++......
T Consensus 1 ~~kI~ViGaGswGT---------ALA~~la~ng~~V~lw~r~~~~~~~i~~~ 43 (329)
T COG0240 1 MMKIAVIGAGSWGT---------ALAKVLARNGHEVRLWGRDEEIVAEINET 43 (329)
T ss_pred CceEEEEcCChHHH---------HHHHHHHhcCCeeEEEecCHHHHHHHHhc
Confidence 36899999888763 47788899999886666665666665554
No 430
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=20.77 E-value=1.7e+02 Score=25.51 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=37.9
Q ss_pred EEEeC--CChhhHHHHHHHHHHHHhCC---CCCcEEEEcCCCC-c------hHHHHHhHHhCCCcC-CCCCHHHHHHHHH
Q 029797 113 FIALP--GGYGTLEELLEVITWAQLGI---HDKPVCVANKPKS-P------LMMALSSLLSATSLS-QHQTLKNLFKNLR 179 (187)
Q Consensus 113 ~Ivlp--GG~GTL~El~~a~~~~~lg~---~~kPvill~~~g~-~------l~~~~~~~~~~~~i~-~~~t~~e~v~~l~ 179 (187)
++.+. |..=+.+++.++..-....- .++.|+++..... . +...++..-+...+. .++.++.++..|+
T Consensus 59 ~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~ 138 (299)
T PRK07132 59 IILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV 138 (299)
T ss_pred eEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH
Confidence 44445 55444667766654333221 2666666655322 1 222222222222222 2468888888999
Q ss_pred hhcccc
Q 029797 180 STCLCM 185 (187)
Q Consensus 180 ~~~~~~ 185 (187)
|+|.+.
T Consensus 139 SRc~~~ 144 (299)
T PRK07132 139 SRCQVF 144 (299)
T ss_pred hCeEEE
Confidence 999764
No 431
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=20.69 E-value=5.5e+02 Score=22.13 Aligned_cols=60 Identities=23% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCccccccc-----ccCCCCceEeecCCHHHHHHH
Q 029797 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE-----ITGETVGEVRPVADMHQRKAE 105 (187)
Q Consensus 45 g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e-----~~~~~~~~~~~~~~m~~R~~~ 105 (187)
.+.|++||. +|+=.+.++.-++.|-.+.+|.-...-+.. ..++...-+++.-+...|..+
T Consensus 6 Kna~vtgga-gGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~ 70 (261)
T KOG4169|consen 6 KNALVTGGA-GGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDL 70 (261)
T ss_pred ceEEEecCC-chhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHH
Confidence 356788886 599999999999999999999643322211 123333344444455446555
No 432
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.68 E-value=2.3e+02 Score=22.91 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=26.7
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCc----ccHHHHHHHHHH
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL-VYGGGS----IGLMGLVSKAVH 66 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~l-v~GGg~----~GlM~a~~~gA~ 66 (187)
+|.||-+|-...|+. ...++++.++++|+.+ +.|=|. ....++..+.+-
T Consensus 109 rivi~v~S~~~~d~~---~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 109 RIVAFVGSPIEEDEK---DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred eEEEEEecCCcCCHH---HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 544444444344443 3567888888888887 444442 234455555543
No 433
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=20.68 E-value=3.3e+02 Score=21.83 Aligned_cols=42 Identities=12% Similarity=-0.150 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCc-hHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 139 DKPVCVANKPKSP-LMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 139 ~kPvill~~~g~~-l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
+.|++++.....+ ....+.....-.++....+++++.+.|+.
T Consensus 77 ~~~iivlt~~~~~~~~~~~~~~~~~~~~~K~~~~~~L~~aI~~ 119 (207)
T PRK15411 77 NTLFIVFMAIANIHFDEYLLVRKNLLISSKSIKPESLDDLLGD 119 (207)
T ss_pred CCeEEEEECCCchhHHHHHHHHhhceeeeccCCHHHHHHHHHH
Confidence 4677777544432 22222221111244556788888887764
No 434
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=20.67 E-value=1.4e+02 Score=26.17 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=27.4
Q ss_pred hCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEE
Q 029797 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVA 145 (187)
Q Consensus 109 ~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill 145 (187)
..|+|||..| .-||+|-..++++. +...+||||+.
T Consensus 77 ~~dG~VVtHG-TDTmeeTA~~Ls~~-l~~l~kPVVlT 111 (323)
T smart00870 77 GYDGVVVTHG-TDTLEETAYFLSLT-LDSLDKPVVLT 111 (323)
T ss_pred CCCEEEEecC-CccHHHHHHHHHHH-hhcCCCCEEEE
Confidence 4689988875 79999999998763 33338999997
No 435
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=20.64 E-value=6.9e+02 Score=23.21 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred HHHHHHHHHHH-CCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcc--cccccccCCCCceEeecCCHHHHHHHHHHh
Q 029797 33 AAIDLAHELVA-RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT--LMNKEITGETVGEVRPVADMHQRKAEMARH 109 (187)
Q Consensus 33 ~A~~lG~~la~-~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~--~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~ 109 (187)
...++.+.|.+ +.-.|+.|+|-.+..+++.+=|-..|-.|+- .+.. ..|...+ ..++..-...+ ...+. .++.
T Consensus 184 ~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lAe~~~~PV~t-t~~gkg~~~~~hp-~~~G~~g~~~~-~~~~~-~l~~ 259 (549)
T PRK06457 184 DFSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIY-TLNGKGILPDLDP-KVMGGIGLLGT-KPSIE-AMDK 259 (549)
T ss_pred HHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHHCCCEEE-cccccccCCCCCh-hhccCCCCCCC-HHHHH-HHHh
Confidence 34556666754 4555677775546667776666667766552 1111 1111111 11111101111 23344 4578
Q ss_pred CCEEEEeCCChh
Q 029797 110 SDCFIALPGGYG 121 (187)
Q Consensus 110 sDa~IvlpGG~G 121 (187)
||.+|+++...+
T Consensus 260 aDlvl~lG~~~~ 271 (549)
T PRK06457 260 ADLLIMLGTSFP 271 (549)
T ss_pred CCEEEEECCCCC
Confidence 999999997765
No 436
>PRK08264 short chain dehydrogenase; Validated
Probab=20.63 E-value=4.2e+02 Score=20.77 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred CeEEEcCCcccHHHHHHHHHHhcCC-eEEEE
Q 029797 46 LDLVYGGGSIGLMGLVSKAVHHGGG-NVIGI 75 (187)
Q Consensus 46 ~~lv~GGg~~GlM~a~~~gA~~~gG-~viGI 75 (187)
..+|+||. +|+=.++++...+.|- .|+.+
T Consensus 8 ~vlItGgs-g~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGAN-RGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCcccEEEE
Confidence 44566654 3666666666555554 44444
No 437
>PRK05723 flavodoxin; Provisional
Probab=20.62 E-value=2e+02 Score=22.28 Aligned_cols=16 Identities=0% Similarity=0.069 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHCC
Q 029797 30 YSDAAIDLAHELVARR 45 (187)
Q Consensus 30 ~~~~A~~lG~~la~~g 45 (187)
|...++++=+.|++.|
T Consensus 101 Fc~a~~~ld~~L~~lG 116 (151)
T PRK05723 101 FCGGGEQMRELFAELG 116 (151)
T ss_pred HhHHHHHHHHHHHHCC
Confidence 4444444444444433
No 438
>PTZ00489 glutamate 5-kinase; Provisional
Probab=20.56 E-value=1.4e+02 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=20.7
Q ss_pred cceEEE-EcCCCCCCCh-HHHHHHHHHHHHHHH----CCCeEEEcCCc
Q 029797 13 FKRVCV-FCGSSTGKRN-CYSDAAIDLAHELVA----RRLDLVYGGGS 54 (187)
Q Consensus 13 ~~~I~V-fggs~~~~~~-~~~~~A~~lG~~la~----~g~~lv~GGg~ 54 (187)
.++|.| +|||-...+. .+...-..+.+.+++ ....||++|+-
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~~~~vilVssGav 55 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQTKYEVILVTSGAV 55 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhcCCeEEEEecChH
Confidence 456666 7777654322 222333334444432 24557877653
No 439
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=20.54 E-value=1.5e+02 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHH
Q 029797 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHEL 41 (187)
Q Consensus 13 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~l 41 (187)
+++|+|||||=++...-+...++++-+.+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~ 31 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERL 31 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHc
Confidence 35799999998777776666666655433
No 440
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=20.53 E-value=1.5e+02 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
+.|.|-|+|+ -.-+.+++.++++|+.++.-.
T Consensus 6 ~~ilITGas~--------GiG~aia~~l~~~G~~v~~~~ 36 (251)
T COG1028 6 KVALVTGASS--------GIGRAIARALAREGARVVVAA 36 (251)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCeEEEEc
Confidence 4566666555 233455666666777744333
No 441
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=20.50 E-value=1e+02 Score=25.22 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=14.0
Q ss_pred CCEEEEeCCC----hhhHHHHHHHHH
Q 029797 110 SDCFIALPGG----YGTLEELLEVIT 131 (187)
Q Consensus 110 sDa~IvlpGG----~GTL~El~~a~~ 131 (187)
.+.+.|++|. .+|=|.++..++
T Consensus 117 ~g~ipVi~g~~g~~~~~sD~~A~~lA 142 (229)
T cd04239 117 KGRIVIFGGGTGNPGFTTDTAAALRA 142 (229)
T ss_pred CCCEEEEeCccCCCCCCcHHHHHHHH
Confidence 4455666666 567777776665
No 442
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.48 E-value=2.9e+02 Score=22.07 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=21.2
Q ss_pred HHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
+.-...|++|+.+...-...+....+. ..+.|+|+++.
T Consensus 53 l~~~~vdgvii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 90 (273)
T cd06310 53 AIARGPDAILLAPTDAKALVPPLKEAK-----DAGIPVVLIDS 90 (273)
T ss_pred HHHhCCCEEEEcCCChhhhHHHHHHHH-----HCCCCEEEecC
Confidence 334468888887754332233333321 24678888764
No 443
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=20.41 E-value=3.2e+02 Score=23.74 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHHHhCCEEEEeC--CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC
Q 029797 102 RKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVCVANKPKS 150 (187)
Q Consensus 102 R~~~m~~~sDa~Ivlp--GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~ 150 (187)
....++..||++|.-. .|.|. =+.||++ .++|||.-+..|.
T Consensus 262 ~~~~~l~~ad~~v~pS~~E~~g~--~~~EAma------~G~PVI~s~~gg~ 304 (398)
T cd03796 262 RVRDVLVQGHIFLNTSLTEAFCI--AIVEAAS------CGLLVVSTRVGGI 304 (398)
T ss_pred HHHHHHHhCCEEEeCChhhccCH--HHHHHHH------cCCCEEECCCCCc
Confidence 3444678899887532 34442 2455553 4899988777665
No 444
>PRK15482 transcriptional regulator MurR; Provisional
Probab=20.38 E-value=5.2e+02 Score=21.64 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHh-cCCeEEEEeCcccccccccCCCCceEeecCCHHHHHHHHHHhCCEE
Q 029797 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHH-GGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCF 113 (187)
Q Consensus 35 ~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~-~gG~viGI~p~~~~~~e~~~~~~~~~~~~~~m~~R~~~m~~~sDa~ 113 (187)
.++.+.|.+.....++|.|..+....-...-+. -|..+.-. ++. +...-....+...|++
T Consensus 126 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~------------------~~~~~~~~~~~~~Dv~ 186 (285)
T PRK15482 126 QKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACE-ADT------------------HVQATVSQALKKGDVQ 186 (285)
T ss_pred HHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEe-ccH------------------hHHHHHHhcCCCCCEE
Confidence 455677777788889998765443222221111 22222111 000 1111111234567888
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC-chHHHHH
Q 029797 114 IALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS-PLMMALS 157 (187)
Q Consensus 114 IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~-~l~~~~~ 157 (187)
|++.- .|--.|+.+++...+ .++.|+|.+..... ++-...+
T Consensus 187 i~iS~-sg~t~~~~~~~~~a~--~~g~~iI~IT~~~~s~la~~ad 228 (285)
T PRK15482 187 IAISY-SGSKKEIVLCAEAAR--KQGATVIAITSLADSPLRRLAH 228 (285)
T ss_pred EEEeC-CCCCHHHHHHHHHHH--HCCCEEEEEeCCCCCchHHhCC
Confidence 87743 333444444443322 45788887765544 5544433
No 445
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=20.36 E-value=1.8e+02 Score=25.27 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=36.4
Q ss_pred HHHhCCEEEEeC-CChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCCchHHHHHhHHhCCCcCCCCCHHHHHHHHHh
Q 029797 106 MARHSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRS 180 (187)
Q Consensus 106 m~~~sDa~Ivlp-GG~GTL~El~~a~~~~~lg~~~kPvill~~~g~~l~~~~~~~~~~~~i~~~~t~~e~v~~l~~ 180 (187)
.+..||++|+-- =+-|+-.=+.|+++. ++|||..+..+..+. .....|.+.. +|++++.+.|..
T Consensus 294 ~~~~adv~v~Ps~~~eG~~~~~lEAma~------G~PVV~t~~~~~~i~----~~~~~g~lv~-~~~~~la~ai~~ 358 (397)
T TIGR03087 294 YLAHAAVAVAPLRIARGIQNKVLEAMAM------AKPVVASPEAAEGID----ALPGAELLVA-ADPADFAAAILA 358 (397)
T ss_pred HHHhCCEEEecccccCCcccHHHHHHHc------CCCEEecCccccccc----ccCCcceEeC-CCHHHHHHHHHH
Confidence 567899987521 122333456777754 899998764222111 1112355444 788888777764
No 446
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.35 E-value=3.5e+02 Score=19.72 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEe
Q 029797 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (187)
Q Consensus 35 ~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~ 76 (187)
.-+...+..+||.+++-|.. ==.+.+.+.|.+.+..+|++.
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS 57 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLS 57 (122)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 33444556689999998865 334567777888888888873
No 447
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=20.35 E-value=1.2e+02 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELV 42 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la 42 (187)
+|+|||||=++...-+...|++..+.+.
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 6999999987777777777877766654
No 448
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.35 E-value=2.2e+02 Score=21.16 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCEEEEe-C---CC-hhhHHHHHHHHHHHHhC-CCCCcEEEEcCCC
Q 029797 101 QRKAEMARHSDCFIAL-P---GG-YGTLEELLEVITWAQLG-IHDKPVCVANKPK 149 (187)
Q Consensus 101 ~R~~~m~~~sDa~Ivl-p---GG-~GTL~El~~a~~~~~lg-~~~kPvill~~~g 149 (187)
.+-.--+..||++|+. | |+ .|.+--+++-+.....+ ..+||+.++...|
T Consensus 62 ~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g 116 (152)
T PF03358_consen 62 QELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGG 116 (152)
T ss_dssp HHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEES
T ss_pred HHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEec
Confidence 3344456779987766 3 44 46666666555421122 4589999885543
No 449
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=20.34 E-value=98 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHhCCEEEEeCCChhhHH--HHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHH
Q 029797 105 EMARHSDCFIALPGGYGTLE--ELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLL 160 (187)
Q Consensus 105 ~m~~~sDa~IvlpGG~GTL~--El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~ 160 (187)
.++..||++ .+|||+|.-- --..|..| .+.+++|..=+- =|. ...+|..+.+
T Consensus 359 ~~l~~adGi-lvPGGFG~RGveG~i~Aak~--ARen~iP~LGiC-LGmQ~AvIEfaRnvL 414 (585)
T KOG2387|consen 359 QKLKSADGI-LVPGGFGDRGVEGKILAAKW--ARENKIPFLGIC-LGMQLAVIEFARNVL 414 (585)
T ss_pred HHhccCCeE-EeCCcccccchhHHHHHHHH--HHhcCCCeEeee-hhhhHHHHHHHHHhh
Confidence 356667775 5699986532 22233333 335688865221 144 2455555544
No 450
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=20.24 E-value=92 Score=25.40 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=18.1
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH----CCCeEEEcCCc
Q 029797 19 FCGSSTGKRNCYSDAAIDLAHELVA----RRLDLVYGGGS 54 (187)
Q Consensus 19 fggs~~~~~~~~~~~A~~lG~~la~----~g~~lv~GGg~ 54 (187)
||||...... -.+.-+++.+.|++ +...||.|||.
T Consensus 6 lGGs~l~~~~-~~~~i~~~~~~i~~~~~~~~iiiV~GgG~ 44 (221)
T cd04253 6 LGGSVLAPEK-DADFIKEYANVLRKISDGHKVAVVVGGGR 44 (221)
T ss_pred eccceeCCCC-ChHHHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 5777654321 11223344444442 34667999975
No 451
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.20 E-value=1.6e+02 Score=23.95 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 029797 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (187)
Q Consensus 14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GG 52 (187)
++|.|.|+++. ....+++.++++|+.|+.-.
T Consensus 11 ~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 11 QVAVVTGAGRG--------LGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 46788876552 34567777778888876444
No 452
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=20.14 E-value=2.6e+02 Score=25.39 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcC-CeEEEEeCcccccccccCCCCceEe-------ecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHH
Q 029797 58 MGLVSKAVHHGG-GNVIGIIPRTLMNKEITGETVGEVR-------PVADMHQRKAEMARHSDCFIALPGGYGTLEELLE 128 (187)
Q Consensus 58 M~a~~~gA~~~g-G~viGI~p~~~~~~e~~~~~~~~~~-------~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~ 128 (187)
-..+.+.-.++| ..+.||++....+.+.+..--.+.+ +.+...++...+++.||++|.-+--+|+-.++..
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~~ 357 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVIG 357 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCchh
Confidence 344555555555 3568887765544333221111222 1234478899999999999997655555555543
No 453
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=20.13 E-value=2.8e+02 Score=22.14 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcC
Q 029797 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK 147 (187)
Q Consensus 106 m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~ 147 (187)
+-...|++|+.|--..-.+++...+ ...+.|+|+++.
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l-----~~~~iPvv~~~~ 89 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAA-----NAAGIPLVYVNR 89 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHH-----HHCCCeEEEecC
Confidence 3446899998876543334443322 134788888764
No 454
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=20.09 E-value=6.2e+02 Score=23.89 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHC-CCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcc--cccccccCCCCceEeecCCHHHHHHHHHH
Q 029797 32 DAAIDLAHELVAR-RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT--LMNKEITGETVGEVRPVADMHQRKAEMAR 108 (187)
Q Consensus 32 ~~A~~lG~~la~~-g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~--~~~~e~~~~~~~~~~~~~~m~~R~~~m~~ 108 (187)
+...++.+.|.+. .-.|+.|+|-.+..+++.+-|-..|-.|+- .+.. ..|.+.+. .++..-...+-.. ...++
T Consensus 196 ~~i~~a~~~L~~AkrPvi~~G~g~~~a~~~l~~lae~~~~PV~t-t~~gkg~~~e~hp~-~~G~~G~~g~~~a--~~~~~ 271 (597)
T PRK08273 196 EDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAK-ALLGKAALPDDLPW-VTGSIGLLGTKPS--YELMR 271 (597)
T ss_pred HHHHHHHHHHhcCCCEEEEECcchHhHHHHHHHHHHHhCCceee-cccCcccCCCCCcc-ceecCCCCccHHH--HHHHH
Confidence 3456677777664 455666766555566666666666655442 1111 11211111 1111101112222 23467
Q ss_pred hCCEEEEeCCChh
Q 029797 109 HSDCFIALPGGYG 121 (187)
Q Consensus 109 ~sDa~IvlpGG~G 121 (187)
.||++|+++..+.
T Consensus 272 ~aDlvl~lG~~~~ 284 (597)
T PRK08273 272 ECDTLLMVGSSFP 284 (597)
T ss_pred hCCEEEEeCCCCC
Confidence 8999999997753
No 455
>PRK08210 aspartate kinase I; Reviewed
Probab=20.07 E-value=1.3e+02 Score=26.92 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHC-C-CeEEEcCCc
Q 029797 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVAR-R-LDLVYGGGS 54 (187)
Q Consensus 15 ~I~Vfggs~~~~~~~~~~~A~~lG~~la~~-g-~~lv~GGg~ 54 (187)
.|-=||||.....+...+.++++.++..+. . ..|++|+|.
T Consensus 4 iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~ 45 (403)
T PRK08210 4 IVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGR 45 (403)
T ss_pred EEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 355588988865455556666666655431 2 234555544
No 456
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.03 E-value=5.4e+02 Score=21.70 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=36.8
Q ss_pred eEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHH--HHHHHhcCCeEEEEeCccc
Q 029797 15 RVCVFCGSSTGK---RNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLV--SKAVHHGGGNVIGIIPRTL 80 (187)
Q Consensus 15 ~I~Vfggs~~~~---~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~--~~gA~~~gG~viGI~p~~~ 80 (187)
-|.+.|++.... +++..+..+.+.+. ++....|+.|-+....-+++ ++.|.+.|...+-++|..+
T Consensus 38 gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~-~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 38 GLVVVGTTGESPTLTHEEHEELIRAVVEA-VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred EEEECCcCCccccCCHHHHHHHHHHHHHH-hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 455655543222 34444444444443 34457788777654555544 4667778887777766554
No 457
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=20.01 E-value=98 Score=25.56 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCEEEEeCCC----hhhHHHHHHHHH
Q 029797 101 QRKAEMARHSDCFIALPGG----YGTLEELLEVIT 131 (187)
Q Consensus 101 ~R~~~m~~~sDa~IvlpGG----~GTL~El~~a~~ 131 (187)
+.-..+++... +++++|+ +.|=|++...++
T Consensus 112 ~~i~~ll~~g~-VpV~~g~~g~~~~s~D~~a~~lA 145 (233)
T TIGR02075 112 RKAIKHLEKGK-VVIFSGGTGNPFFTTDTAAALRA 145 (233)
T ss_pred HHHHHHHHCCC-EEEEECCCCCCCCCchHHHHHHH
Confidence 34444555555 4556555 456677776655
Done!