Query 029799
Match_columns 187
No_of_seqs 205 out of 826
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3158 HSP90 co-chaperone p23 100.0 1.4E-40 3.1E-45 266.1 10.4 132 2-135 5-142 (180)
2 cd00237 p23 p23 binds heat sho 100.0 2.7E-35 6E-40 221.3 12.9 105 4-111 1-106 (106)
3 PLN03088 SGT1, suppressor of 100.0 3.5E-34 7.5E-39 253.7 9.0 147 4-163 156-328 (356)
4 KOG1309 Suppressor of G2 allel 100.0 1.2E-32 2.7E-37 221.7 4.2 148 3-163 2-170 (196)
5 cd06465 p23_hB-ind1_like p23_l 100.0 3.5E-30 7.6E-35 192.8 13.1 107 5-113 1-108 (108)
6 cd06489 p23_CS_hSgt1_like p23_ 99.9 4.2E-22 9.1E-27 142.6 9.4 82 8-91 1-84 (84)
7 cd06488 p23_melusin_like p23_l 99.9 1.8E-21 3.8E-26 140.9 10.7 85 5-91 1-87 (87)
8 cd06468 p23_CacyBP p23_like do 99.8 4.5E-20 9.8E-25 133.7 10.8 84 6-91 3-92 (92)
9 cd06466 p23_CS_SGT1_like p23_l 99.8 1.4E-19 3.1E-24 128.2 8.9 82 8-91 1-84 (84)
10 COG5091 SGT1 Suppressor of G2 99.8 1.4E-20 3.1E-25 161.1 1.6 153 5-169 177-348 (368)
11 PF04969 CS: CS domain; Inter 99.7 2.7E-17 6E-22 114.0 11.7 75 5-81 1-79 (79)
12 cd06469 p23_DYX1C1_like p23_li 99.7 1.1E-17 2.4E-22 117.3 9.1 76 9-91 1-78 (78)
13 cd06467 p23_NUDC_like p23_like 99.7 2.7E-17 5.9E-22 117.1 9.7 80 7-91 1-85 (85)
14 cd06463 p23_like Proteins cont 99.7 3.6E-17 7.9E-22 114.1 9.9 81 9-91 1-84 (84)
15 cd06493 p23_NUDCD1_like p23_NU 99.7 1.1E-16 2.5E-21 115.0 10.0 80 7-91 1-85 (85)
16 cd06490 p23_NCB5OR p23_like do 99.6 1.2E-15 2.6E-20 110.6 9.7 80 7-90 1-86 (87)
17 cd06492 p23_mNUDC_like p23-lik 99.6 4.7E-15 1E-19 107.7 9.1 80 7-91 1-87 (87)
18 cd06494 p23_NUDCD2_like p23-li 99.6 8.3E-15 1.8E-19 107.8 10.1 83 3-91 4-93 (93)
19 cd06495 p23_NUDCD3_like p23-li 99.6 2.2E-14 4.7E-19 107.3 11.5 91 3-95 3-98 (102)
20 KOG2265 Nuclear distribution p 99.4 7.8E-13 1.7E-17 106.7 6.1 125 3-135 17-148 (179)
21 KOG1667 Zn2+-binding protein M 99.4 1.5E-12 3.3E-17 110.6 7.8 90 3-93 213-304 (320)
22 KOG3260 Calcyclin-binding prot 99.3 1.5E-12 3.3E-17 105.8 3.9 129 6-160 76-213 (224)
23 cd00298 ACD_sHsps_p23-like Thi 99.1 3.6E-10 7.8E-15 76.5 8.9 72 9-81 1-80 (80)
24 PF05002 SGS: SGS domain ; In 98.9 7.3E-11 1.6E-15 84.9 -1.3 50 103-163 2-56 (82)
25 KOG4379 Uncharacterized conser 98.2 4.3E-06 9.3E-11 76.5 6.9 88 1-94 286-378 (596)
26 COG0071 IbpA Molecular chapero 97.9 0.00025 5.4E-09 55.6 11.0 81 3-84 39-135 (146)
27 cd06472 ACD_ScHsp26_like Alpha 97.7 0.00056 1.2E-08 49.4 9.6 76 6-81 1-92 (92)
28 cd06471 ACD_LpsHSP_like Group 97.4 0.002 4.4E-08 46.3 9.6 75 5-81 1-93 (93)
29 cd06464 ACD_sHsps-like Alpha-c 97.4 0.002 4.4E-08 44.7 8.9 72 9-81 2-88 (88)
30 PF00011 HSP20: Hsp20/alpha cr 97.3 0.0081 1.8E-07 43.5 11.3 76 8-84 1-90 (102)
31 cd06526 metazoan_ACD Alpha-cry 96.4 0.029 6.3E-07 39.6 8.1 67 14-81 7-83 (83)
32 cd06475 ACD_HspB1_like Alpha c 96.2 0.07 1.5E-06 38.3 9.4 72 8-80 4-85 (86)
33 cd06497 ACD_alphaA-crystallin_ 96.2 0.058 1.3E-06 38.7 8.8 71 10-81 6-86 (86)
34 cd06470 ACD_IbpA-B_like Alpha- 96.1 0.14 3E-06 36.8 10.4 74 5-81 1-90 (90)
35 PRK10743 heat shock protein Ib 96.0 0.15 3.3E-06 39.9 10.7 75 5-82 35-124 (137)
36 cd06498 ACD_alphaB-crystallin_ 95.8 0.11 2.4E-06 37.1 8.7 70 12-82 5-84 (84)
37 cd06479 ACD_HspB7_like Alpha c 95.8 0.11 2.3E-06 37.1 8.5 70 11-81 5-81 (81)
38 cd06478 ACD_HspB4-5-6 Alpha-cr 95.6 0.13 2.9E-06 36.5 8.4 70 11-81 4-83 (83)
39 PRK11597 heat shock chaperone 95.3 0.41 8.8E-06 37.8 10.9 76 4-82 32-122 (142)
40 PF08190 PIH1: pre-RNA process 95.2 0.14 3E-06 44.5 9.0 63 13-80 260-327 (328)
41 cd06476 ACD_HspB2_like Alpha c 94.5 0.31 6.7E-06 34.8 7.7 68 13-81 6-83 (83)
42 cd06481 ACD_HspB9_like Alpha c 94.3 0.41 8.9E-06 34.3 8.0 66 13-79 6-85 (87)
43 cd06477 ACD_HspB3_Like Alpha c 90.0 4.7 0.0001 28.8 8.9 66 12-78 5-80 (83)
44 cd06482 ACD_HspB10 Alpha cryst 88.9 4.5 9.7E-05 29.2 8.2 64 13-77 7-83 (87)
45 PF05455 GvpH: GvpH; InterPro 84.4 12 0.00026 30.7 9.3 71 8-83 95-169 (177)
46 cd06480 ACD_HspB8_like Alpha-c 81.6 17 0.00037 26.4 8.3 66 13-79 14-89 (91)
47 KOG3247 Uncharacterized conser 55.9 7.8 0.00017 35.9 2.0 81 3-90 2-88 (466)
48 cd06526 metazoan_ACD Alpha-cry 42.6 55 0.0012 22.6 4.3 34 49-83 7-40 (83)
49 PF09087 Cyc-maltodext_N: Cycl 39.3 1.5E+02 0.0032 21.5 7.5 64 5-70 4-69 (88)
50 cd06464 ACD_sHsps-like Alpha-c 38.2 67 0.0014 21.5 4.1 36 48-84 6-41 (88)
51 cd05734 Ig7_DSCAM Seventh immu 38.1 98 0.0021 20.5 4.9 52 4-56 12-64 (79)
52 PF06543 Lac_bphage_repr: Lact 36.6 9.9 0.00021 24.7 -0.3 9 102-110 17-25 (49)
53 TIGR03066 Gem_osc_para_1 Gemma 35.7 82 0.0018 23.9 4.5 44 26-82 34-77 (111)
54 cd05726 Ig4_Robo Fhird immunog 32.0 1.7E+02 0.0036 19.9 5.8 58 4-61 15-73 (90)
55 cd05885 Ig2_Necl-4 Second immu 31.5 1.4E+02 0.003 20.9 4.9 50 4-56 14-63 (80)
56 KOG3591 Alpha crystallins [Pos 30.9 2.9E+02 0.0062 22.3 8.6 67 16-83 74-150 (173)
57 cd05845 Ig2_L1-CAM_like Second 30.7 1.5E+02 0.0032 21.5 5.1 46 4-56 33-79 (95)
58 KOG0710 Molecular chaperone (s 30.0 1.4E+02 0.0031 24.4 5.4 79 6-84 84-182 (196)
59 cd06471 ACD_LpsHSP_like Group 26.5 1.4E+02 0.003 20.8 4.3 35 48-83 9-43 (93)
60 cd05724 Ig2_Robo Second immuno 25.3 2.1E+02 0.0045 18.8 5.0 20 37-56 52-71 (86)
61 COG4856 Uncharacterized protei 25.2 2.7E+02 0.0058 25.8 6.7 31 54-84 107-137 (403)
62 cd05765 Ig_3 Subgroup of the i 25.1 2E+02 0.0044 18.7 5.5 58 4-61 15-73 (81)
No 1
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=266.10 Aligned_cols=132 Identities=54% Similarity=0.954 Sum_probs=117.6
Q ss_pred CCCCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEe
Q 029799 2 SRVPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEK 81 (187)
Q Consensus 2 s~~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkK 81 (187)
.++|.|.||||.+.|||||+|.++++++|++++. .|+|+++++++++.|+++|+||++|+|++|++++++|.|+++|+|
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence 3689999999999999999999999999999998 999999988889999999999999999999999999999999999
Q ss_pred CCC-CcccceecCCCCCCCceeecCCCcccccccCCCCCCC----CCCCccccc-CCCCC
Q 029799 82 AEK-GWWKKLLRGDGKTPHYVKVDWDKWVDEDEDNGAGDLD----LGGMDFSNF-GGMGG 135 (187)
Q Consensus 82 k~~-~~WprL~k~~~kk~~~lkvDwdkw~dEdeeee~~~~~----~~~~df~~~-~~~gg 135 (187)
++. .+|||||+++. ||||||+||+||+||||++++++++ .++|+|.++ +||||
T Consensus 84 ~e~~~~WprLtkeK~-K~hwLkvDFdkW~Dededde~~~~~~~g~a~g~~~~~~mggmgg 142 (180)
T KOG3158|consen 84 KELGEYWPRLTKEKA-KLHWLKVDFDKWVDEDEDDEAEDADGMGGAGGMDFSQMMGGMGG 142 (180)
T ss_pred cccccccchhhhccc-ccceEEcchhhccccccccchhhccccccccccchhhccccCCc
Confidence 875 79999999999 8999999999999999876654432 456666663 44555
No 2
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=100.00 E-value=2.7e-35 Score=221.33 Aligned_cols=105 Identities=32% Similarity=0.605 Sum_probs=98.8
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029799 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~ 83 (187)
+|++.||||++.|||||.++++++++|+|+++ +|+|++.++ +|.+|.++|+||++|+|++|+|++++|+|+|+|+|++
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~~-~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEKS-KLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEecC-EEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence 69999999999999999999999999999998 999999754 6788999999999999999999999999999999987
Q ss_pred C-CcccceecCCCCCCCceeecCCCcccc
Q 029799 84 K-GWWKKLLRGDGKTPHYVKVDWDKWVDE 111 (187)
Q Consensus 84 ~-~~WprL~k~~~kk~~~lkvDwdkw~dE 111 (187)
. .+||||++++. +||||++|||||+||
T Consensus 79 ~~~~WprL~k~~~-k~~~lk~DfdkW~D~ 106 (106)
T cd00237 79 EGVAWPRLTKEKA-KPNWLSVDFDNWRDW 106 (106)
T ss_pred CCCCCchhhcCCC-CCCcEECcchhccCC
Confidence 4 48999999988 799999999999986
No 3
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=3.5e-34 Score=253.74 Aligned_cols=147 Identities=25% Similarity=0.345 Sum_probs=124.7
Q ss_pred CCCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEe
Q 029799 4 VPEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEK 81 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkK 81 (187)
.++++|||+.+.|+|+|+++++ .++.|+|+++ +|+|++.. ..+..|.|.++||++|+|++|+|+|.+++|+|+|+|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K 233 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEV-PGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAK 233 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEec-CCCcceeecccccccccccccEEEEecceEEEEEec
Confidence 3689999999999999999987 5799999998 99999874 356789999999999999999999999999999999
Q ss_pred CCCCcccceecCCCC----C----------CCc-----eeecCCCccccc---ccC--CCCCCCCCCCcccccCCCCCCC
Q 029799 82 AEKGWWKKLLRGDGK----T----------PHY-----VKVDWDKWVDED---EDN--GAGDLDLGGMDFSNFGGMGGDD 137 (187)
Q Consensus 82 k~~~~WprL~k~~~k----k----------~~~-----lkvDwdkw~dEd---eee--e~~~~~~~~~df~~~~~~gg~~ 137 (187)
+++.+|++|+..... . |.| .++|||||..++ +++ .+|++++|.| |+|||.
T Consensus 234 ~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~-f~~iY~----- 307 (356)
T PLN03088 234 AEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKF-FREIYQ----- 307 (356)
T ss_pred CCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHH-HHHHHh-----
Confidence 998899999966421 0 111 257999997553 222 2467789999 999999
Q ss_pred CCCCCCCCchhccchHHHHHHcCCCc
Q 029799 138 GMGGFEDSDDEVSKPQQEVRKAGDTN 163 (187)
Q Consensus 138 ~~~~~d~~dD~~~am~~~~~~s~gt~ 163 (187)
+.|||.||||||||+|||||-
T Consensus 308 -----~~d~d~rram~KSf~eS~gt~ 328 (356)
T PLN03088 308 -----NADEDTRRAMMKSFVESNGTV 328 (356)
T ss_pred -----cCCHHHHHHHHHHhhhcCCeE
Confidence 999999999999999999984
No 4
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-32 Score=221.75 Aligned_cols=148 Identities=22% Similarity=0.353 Sum_probs=126.6
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029799 3 RVPEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~Lk 80 (187)
-.++|+|||+...|+|||+++++ +++.|.|..+ .|++.+.. +.|..|.+.+.||++|+|+.|+|++.+.+|||+|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~-~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQL-PSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLA 79 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEec-CCchhhhhhHHhcccccccceeeEeeeeeEEEEec
Confidence 36899999999999999999998 5889999877 88888874 46789999999999999999999999999999999
Q ss_pred eCCCCcccceecCCCC--------------CC-CceeecCCCcccccccCCC----CCCCCCCCcccccCCCCCCCCCCC
Q 029799 81 KAEKGWWKKLLRGDGK--------------TP-HYVKVDWDKWVDEDEDNGA----GDLDLGGMDFSNFGGMGGDDGMGG 141 (187)
Q Consensus 81 Kk~~~~WprL~k~~~k--------------k~-~~lkvDwdkw~dEdeeee~----~~~~~~~~df~~~~~~gg~~~~~~ 141 (187)
|.+...|..|++.+.. +| .-.+.||++...|++.+|+ +||++|.| ||+||.
T Consensus 80 K~~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~l-F~kiY~--------- 149 (196)
T KOG1309|consen 80 KAEIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKL-FQKIYS--------- 149 (196)
T ss_pred cccchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHH-HHHHHh---------
Confidence 9888899999965430 11 1137899999977643221 37889999 999999
Q ss_pred CCCCchhccchHHHHHHcCCCc
Q 029799 142 FEDSDDEVSKPQQEVRKAGDTN 163 (187)
Q Consensus 142 ~d~~dD~~~am~~~~~~s~gt~ 163 (187)
+.+||.||||||||.|||||-
T Consensus 150 -~addDvrRAM~KSf~ESnGTv 170 (196)
T KOG1309|consen 150 -DADDDVRRAMMKSFSESNGTV 170 (196)
T ss_pred -cCCHHHHHHHHhhhhhcCCeE
Confidence 999999999999999999985
No 5
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.97 E-value=3.5e-30 Score=192.84 Aligned_cols=107 Identities=46% Similarity=0.842 Sum_probs=100.2
Q ss_pred CCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC-
Q 029799 5 PEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE- 83 (187)
Q Consensus 5 P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~- 83 (187)
|.|.||||.+.|+|+|++++++++.|.|+++ +|+|++....+++.|.++++||++|+|++|+|++.+++|+|+|+|++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~~-~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEECC-EEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 7899999999999999999999999999998 99999974345678999999999999999999999999999999998
Q ss_pred CCcccceecCCCCCCCceeecCCCcccccc
Q 029799 84 KGWWKKLLRGDGKTPHYVKVDWDKWVDEDE 113 (187)
Q Consensus 84 ~~~WprL~k~~~kk~~~lkvDwdkw~dEde 113 (187)
+.+|+||++.+. +++|+++||+||+||||
T Consensus 80 ~~~W~~L~~~~~-k~~~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKG-KLPWLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCC-CCCceECCchhcccCCC
Confidence 789999999988 78899999999999986
No 6
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.87 E-value=4.2e-22 Score=142.59 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=76.3
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCCC
Q 029799 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKG 85 (187)
Q Consensus 8 ~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~~~ 85 (187)
+||||.+.|+|+|+++++ ++++|+|+++ +|+|++.. .+++.|.|+++||++|+|++|+|++.+++|+|+|+|+++.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKL-PSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAI 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEEC-CCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCC
Confidence 599999999999999999 7899999998 99999874 3567899999999999999999999999999999999888
Q ss_pred ccccee
Q 029799 86 WWKKLL 91 (187)
Q Consensus 86 ~WprL~ 91 (187)
+||||+
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999995
No 7
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.86 E-value=1.8e-21 Score=140.87 Aligned_cols=85 Identities=25% Similarity=0.388 Sum_probs=77.0
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029799 5 PEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA 82 (187)
Q Consensus 5 P~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk 82 (187)
.+++||||++.|+|+|+++++ +++.|.++++ +|+|++..+ +++.|.+.++||++|+|+.|+|++.+++|+|+|+|+
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeC
Confidence 479999999999999999876 5789999988 999887643 467899999999999999999999999999999999
Q ss_pred CCCccccee
Q 029799 83 EKGWWKKLL 91 (187)
Q Consensus 83 ~~~~WprL~ 91 (187)
++++||+|+
T Consensus 79 ~~~~W~~Le 87 (87)
T cd06488 79 EPGSWAKLE 87 (87)
T ss_pred CCCcCccCC
Confidence 988999995
No 8
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.83 E-value=4.5e-20 Score=133.70 Aligned_cols=84 Identities=21% Similarity=0.404 Sum_probs=76.6
Q ss_pred CeEEEecCCeEEEEEEcCCC-----CcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccccccCceEEecCceEEEEE
Q 029799 6 EVKWAQRQDKVFITVQLPDA-----KNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKVNVEESKINVGVRSIFCIV 79 (187)
Q Consensus 6 ~v~WaQ~~~~V~lTI~lkd~-----kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~le-Lf~eI~peeS~~kv~~~kIeI~L 79 (187)
+|.|+||.+.|+|+|+++++ +++.|+|+++ +|.|++.. .++.+|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~-~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHD-LNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEEC-CCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 68999999999999999975 5789999998 99999863 46778999997 99999999999999999999999
Q ss_pred EeCCCCccccee
Q 029799 80 EKAEKGWWKKLL 91 (187)
Q Consensus 80 kKk~~~~WprL~ 91 (187)
+|+++.+||+|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999889999995
No 9
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.81 E-value=1.4e-19 Score=128.23 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=75.3
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCCC
Q 029799 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKG 85 (187)
Q Consensus 8 ~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~~~ 85 (187)
+|||+.+.|+|+|+++++ +++.|.++++ +|.|++..+ ++..|.++++||++|+|++|+|++.+++|+|+|+|+.+.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPG 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCC
Confidence 599999999999999998 7899999998 999998742 356899999999999999999999999999999999888
Q ss_pred ccccee
Q 029799 86 WWKKLL 91 (187)
Q Consensus 86 ~WprL~ 91 (187)
+||+|.
T Consensus 79 ~W~~L~ 84 (84)
T cd06466 79 SWPSLE 84 (84)
T ss_pred CCccCC
Confidence 999984
No 10
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.79 E-value=1.4e-20 Score=161.11 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=119.1
Q ss_pred CCeEEEecCCeEEEEEEcCCCCc--ceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029799 5 PEVKWAQRQDKVFITVQLPDAKN--AKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA 82 (187)
Q Consensus 5 P~v~WaQ~~~~V~lTI~lkd~kd--~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk 82 (187)
-+|+|+||...+.|-|+.+.+.+ |.+-++++ .|+++++....+..+.+.+.||++|.|+.+.+++.+.++++.|+|.
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV 255 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV 255 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence 35777778778888887787754 55666777 8999987544456677888999999999999999998899999999
Q ss_pred CCCcccceecCCCC-----------------CCCceeecCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 029799 83 EKGWWKKLLRGDGK-----------------TPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGFEDS 145 (187)
Q Consensus 83 ~~~~WprL~k~~~k-----------------k~~~lkvDwdkw~dEdeeee~~~~~~~~~df~~~~~~gg~~~~~~~d~~ 145 (187)
+...|..|.+.... +....+.||++...+++-+|+..-.|..| ||+||. ..+
T Consensus 256 ~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps~~dsl-FqklY~----------~ad 324 (368)
T COG5091 256 EMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPSVMDSL-FQKLYQ----------RAD 324 (368)
T ss_pred hhhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCchHHHHH-HHHHHh----------cCC
Confidence 88899999865320 12236889999998776554432235567 999998 889
Q ss_pred chhccchHHHHHHcCCCccccccc
Q 029799 146 DDEVSKPQQEVRKAGDTNQEEEGE 169 (187)
Q Consensus 146 dD~~~am~~~~~~s~gt~~~~~~~ 169 (187)
||.||||||||.|||||.-...=+
T Consensus 325 dDtrRAMmKSf~ESnGTaLSTdW~ 348 (368)
T COG5091 325 DDTRRAMMKSFYESNGTALSTDWD 348 (368)
T ss_pred chHHHHHHHHHhhcCCceecccHH
Confidence 999999999999999997554333
No 11
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.75 E-value=2.7e-17 Score=114.04 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=66.9
Q ss_pred CCeEEEecCCeEEEEEEcCCC----CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029799 5 PEVKWAQRQDKVFITVQLPDA----KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (187)
Q Consensus 5 P~v~WaQ~~~~V~lTI~lkd~----kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~Lk 80 (187)
|+|.|+|+.+.|+|+|.+++. ++++|+|+++ +|+|++..+ +++.|.++++||++|+|++|+|++.+++|+|+|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSG-DGKEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEET-TSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEcc-CCceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 899999999999999999664 6899999998 999998753 3389999999999999999999999999999999
Q ss_pred e
Q 029799 81 K 81 (187)
Q Consensus 81 K 81 (187)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 8
No 12
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.74 E-value=1.1e-17 Score=117.29 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=67.6
Q ss_pred EEecCCeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCCCc
Q 029799 9 WAQRQDKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGW 86 (187)
Q Consensus 9 WaQ~~~~V~lTI~lkd~k--d~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~~~~ 86 (187)
|+|+.+.|+|+|.+++++ ++.|+++++ .|.|++ ..|.+.++||++|+|++|++++.+++|+|+|.|+++++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~ 73 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGI 73 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCc
Confidence 999999999999999985 567777766 666654 46999999999999999999999999999999998889
Q ss_pred cccee
Q 029799 87 WKKLL 91 (187)
Q Consensus 87 WprL~ 91 (187)
||||+
T Consensus 74 W~~L~ 78 (78)
T cd06469 74 WEALC 78 (78)
T ss_pred ccccC
Confidence 99995
No 13
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.73 E-value=2.7e-17 Score=117.05 Aligned_cols=80 Identities=30% Similarity=0.543 Sum_probs=72.1
Q ss_pred eEEEecCCeEEEEEEcCCC---CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEEEEEEeC
Q 029799 7 VKWAQRQDKVFITVQLPDA---KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIFCIVEKA 82 (187)
Q Consensus 7 v~WaQ~~~~V~lTI~lkd~---kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~-~kIeI~LkKk 82 (187)
|.|+|+.+.|+|+|.+++. ++++|+|+++ +|+|++. +..+.+.+.||++|+|++|+|++.+ ++|+|+|+|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~----~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVK----GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEEC----CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence 6899999999999999864 7899999998 9999984 2457789999999999999999999 9999999999
Q ss_pred CC-Cccccee
Q 029799 83 EK-GWWKKLL 91 (187)
Q Consensus 83 ~~-~~WprL~ 91 (187)
++ .+||+|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06467 76 NEGEWWPSLV 85 (85)
T ss_pred CCCccccccC
Confidence 87 6999984
No 14
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.73 E-value=3.6e-17 Score=114.09 Aligned_cols=81 Identities=37% Similarity=0.585 Sum_probs=74.5
Q ss_pred EEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCCC-C
Q 029799 9 WAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEK-G 85 (187)
Q Consensus 9 WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~~-~ 85 (187)
|+|+.+.|+|+|.++++ +++.|+|+++ +|+|++.. ..+..|.++++||++|+|++|+|++.+++|+|+|+|+.+ .
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~-~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKG-GGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeC-CCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCC
Confidence 99999999999999998 7899999988 99999873 235789999999999999999999999999999999987 8
Q ss_pred ccccee
Q 029799 86 WWKKLL 91 (187)
Q Consensus 86 ~WprL~ 91 (187)
+|++|+
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999985
No 15
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.70 E-value=1.1e-16 Score=114.99 Aligned_cols=80 Identities=21% Similarity=0.458 Sum_probs=68.5
Q ss_pred eEEEecCCeEEEEEEcC-CC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEec-CceEEEEEEeC
Q 029799 7 VKWAQRQDKVFITVQLP-DA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVG-VRSIFCIVEKA 82 (187)
Q Consensus 7 v~WaQ~~~~V~lTI~lk-d~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~-~~kIeI~LkKk 82 (187)
|.|+||.+.|+|+|+++ ++ ++++|+|+++ +|.|.+. +....++++||+.|+|++|+|++. +++|+|+|.|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~----~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK----DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC----CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 68999999999999996 44 7999999998 9999863 223458889999999999999995 56799999999
Q ss_pred CCC-ccccee
Q 029799 83 EKG-WWKKLL 91 (187)
Q Consensus 83 ~~~-~WprL~ 91 (187)
+++ +||+|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06493 76 DEGPTWPELV 85 (85)
T ss_pred CCCccccccC
Confidence 854 999984
No 16
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.65 E-value=1.2e-15 Score=110.61 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=67.0
Q ss_pred eEEEecCCeEEEEEEcCC--CCc--ceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEec--CceEEEEEE
Q 029799 7 VKWAQRQDKVFITVQLPD--AKN--AKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVG--VRSIFCIVE 80 (187)
Q Consensus 7 v~WaQ~~~~V~lTI~lkd--~kd--~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~--~~kIeI~Lk 80 (187)
|+|||+.+.|+|+|+.+. ..+ +.+.+..+ +|++++..+ +..|.++++||++|+|+. ++++. ++||||+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence 589999999999999885 344 44666766 899988753 677999999999998764 88887 569999999
Q ss_pred eCCCCcccce
Q 029799 81 KAEKGWWKKL 90 (187)
Q Consensus 81 Kk~~~~WprL 90 (187)
|+++..|++|
T Consensus 77 K~e~~~W~~L 86 (87)
T cd06490 77 KKEPEKWTSL 86 (87)
T ss_pred cCCCCccccC
Confidence 9999999998
No 17
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.60 E-value=4.7e-15 Score=107.66 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=70.2
Q ss_pred eEEEecCCeEEEEEEcCC-----CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEEEEEE
Q 029799 7 VKWAQRQDKVFITVQLPD-----AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIFCIVE 80 (187)
Q Consensus 7 v~WaQ~~~~V~lTI~lkd-----~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~-~kIeI~Lk 80 (187)
|.|.||.+.|+|+|.++. +++++|+|+++ +|+|..+ |+.+.++.+||++|+|++|+|.+.+ +.|.|+|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~----g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLK----GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEEC----CCceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence 689999999999999953 47999999998 9999874 4467899999999999999999966 67999999
Q ss_pred eCCC-Cccccee
Q 029799 81 KAEK-GWWKKLL 91 (187)
Q Consensus 81 Kk~~-~~WprL~ 91 (187)
|... .|||+|+
T Consensus 76 K~~~~~wW~~l~ 87 (87)
T cd06492 76 KINKMEWWSRLV 87 (87)
T ss_pred ECCCCccccccC
Confidence 9864 6999984
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.60 E-value=8.3e-15 Score=107.78 Aligned_cols=83 Identities=34% Similarity=0.520 Sum_probs=72.2
Q ss_pred CCCCeEEEecCCeEEEEEEcCC---CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCce-EEEE
Q 029799 3 RVPEVKWAQRQDKVFITVQLPD---AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRS-IFCI 78 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd---~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~k-IeI~ 78 (187)
.++.|.|+|+.+.|.|+|.++. .++++|.|+++ +|.+.++ +.. .++.+||+.|+|++|+|++.+++ |+|.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~----g~~-~l~G~L~~~I~~destWtled~k~l~I~ 77 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVK----GQE-VLKGKLFDSVVADECTWTLEDRKLIRIV 77 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEEC----CEE-EEcCcccCccCcccCEEEEECCcEEEEE
Confidence 4689999999999999998885 37999999999 9999984 344 68889999999999999999888 6999
Q ss_pred EEeCCC---Cccccee
Q 029799 79 VEKAEK---GWWKKLL 91 (187)
Q Consensus 79 LkKk~~---~~WprL~ 91 (187)
|.|.+. ++|++|+
T Consensus 78 L~K~~~~~~~~W~sl~ 93 (93)
T cd06494 78 LTKSNRDAGNCWKSLL 93 (93)
T ss_pred EEeCCCCCCccccccC
Confidence 999864 3899884
No 19
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.59 E-value=2.2e-14 Score=107.27 Aligned_cols=91 Identities=21% Similarity=0.427 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecC-ceEEE
Q 029799 3 RVPEVKWAQRQDKVFITVQLPD----AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGV-RSIFC 77 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd----~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~-~kIeI 77 (187)
.++.|.|.||.+.|.|+|.++. +++++|+|+++ +|.|..+.+ .+..-.++.+||+.|++++|+|.+.+ ..|.|
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~-~~~~~~i~G~L~~~V~~des~Wtled~~~l~I 80 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDG-GGEKVLMEGEFTHKINTENSLWSLEPGKCVLL 80 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecC-CCCceEEeCcccCcccCccceEEEeCCCEEEE
Confidence 3688999999999999999995 26899999999 999998631 23233589999999999999999987 55899
Q ss_pred EEEeCCCCcccceecCCC
Q 029799 78 IVEKAEKGWWKKLLRGDG 95 (187)
Q Consensus 78 ~LkKk~~~~WprL~k~~~ 95 (187)
+|.|....|||+|.+...
T Consensus 81 ~L~K~~~~wW~~v~~g~~ 98 (102)
T cd06495 81 SLSKCSEVWWNAVLKGEE 98 (102)
T ss_pred EEEECCCcccchhhCCCC
Confidence 999988789999999865
No 20
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.37 E-value=7.8e-13 Score=106.71 Aligned_cols=125 Identities=18% Similarity=0.320 Sum_probs=91.7
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceE-EE
Q 029799 3 RVPEVKWAQRQDKVFITVQLPD----AKNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSI-FC 77 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd----~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kI-eI 77 (187)
..|.|.|+|+-..|.|.|.++. .++++|.|..+ +|.+..+ |....++.+||++|++++|.|+|.++++ .|
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~k----g~~~ildG~L~~~vk~des~WtiEd~k~i~i 91 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGLK----GQPPILDGELSHSVKVDESTWTIEDGKMIVI 91 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEecC----CCCceecCccccccccccceEEecCCEEEEE
Confidence 3589999999999999998874 36899999988 8888875 4456799999999999999999987666 55
Q ss_pred EEEeCC-CCcccceecCCCCCCCceeecC-CCcccccccCCCCCCCCCCCcccccCCCCC
Q 029799 78 IVEKAE-KGWWKKLLRGDGKTPHYVKVDW-DKWVDEDEDNGAGDLDLGGMDFSNFGGMGG 135 (187)
Q Consensus 78 ~LkKk~-~~~WprL~k~~~kk~~~lkvDw-dkw~dEdeeee~~~~~~~~~df~~~~~~gg 135 (187)
.|+|.. ..||.||++... .+...+++- .+-....+++. -+-+.+|+|+|-...+|
T Consensus 92 ~l~K~~~~eWW~~ll~gep-~ID~~ki~~e~skl~dldeEt--ra~vekmmfdq~qk~~~ 148 (179)
T KOG2265|consen 92 LLKKSNKMEWWDSLLEGEP-EIDTKKIEPEESKLSDLDEET--RATVEKMMFDQRQKSMG 148 (179)
T ss_pred EeeccchHHHHHHHHcCCC-CCCccccChhhhhhhhccHHH--HHhhhccchhHHHhhcC
Confidence 666655 479999999987 565567776 42332222221 12345777888654333
No 21
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=110.59 Aligned_cols=90 Identities=27% Similarity=0.351 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029799 3 RVPEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~Lk 80 (187)
...|++|.|+...|+|+|+.++. .-..|+.++. .|++++..+.++..|.++++|++.|++++|++.+.+++|||+|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 35789999999999999999986 3456777776 88888887767788999999999999999999999999999999
Q ss_pred eCCCCcccceecC
Q 029799 81 KAEKGWWKKLLRG 93 (187)
Q Consensus 81 Kk~~~~WprL~k~ 93 (187)
|++++.|++|.-.
T Consensus 292 k~ep~sWa~Le~p 304 (320)
T KOG1667|consen 292 KAEPGSWARLEFP 304 (320)
T ss_pred ccCCCCcccccCC
Confidence 9999999999865
No 22
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.30 E-value=1.5e-12 Score=105.82 Aligned_cols=129 Identities=16% Similarity=0.297 Sum_probs=102.3
Q ss_pred CeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccccccCceEEecCceEEEEEEeC
Q 029799 6 EVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKVNVEESKINVGVRSIFCIVEKA 82 (187)
Q Consensus 6 ~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~le-Lf~eI~peeS~~kv~~~kIeI~LkKk 82 (187)
.|-|-|++++|-+.|.|.++ .+++|.|+|. +|.+.+. ...|+.|.+.++ |+++|.||.|+.+|....|.|.++|-
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~-dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVH-DLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEeccc-ceeeeee-ecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 37899999999999999988 5899999998 9998886 468999999997 99999999999999999999999888
Q ss_pred CCCcccceec------CCCCCCCceeecCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhccchHHHH
Q 029799 83 EKGWWKKLLR------GDGKTPHYVKVDWDKWVDEDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGFEDSDDEVSKPQQEV 156 (187)
Q Consensus 83 ~~~~WprL~k------~~~kk~~~lkvDwdkw~dEdeeee~~~~~~~~~df~~~~~~gg~~~~~~~d~~dD~~~am~~~~ 156 (187)
+..+|.-|+. ++. +|.+ +-+.+...++=++ |.+||. |.|||-.+...|+.
T Consensus 154 e~~rwd~Lt~~~Ke~Kek~-kpsl------------~ke~DP~~glmnv-mKk~Ye----------DGD~~mK~tIaKAW 209 (224)
T KOG3260|consen 154 ENTRWDYLTQVEKECKEKE-KPSL------------DKETDPSEGLMNV-MKKIYE----------DGDDDMKQTIAKAW 209 (224)
T ss_pred hcccchHHHHHHHHHhhcc-Cccc------------cccCChHHHHHHH-HHHHHh----------cccHHHHHHHHHHH
Confidence 8889999973 222 3322 1111122234456 889997 77888888888998
Q ss_pred HHcC
Q 029799 157 RKAG 160 (187)
Q Consensus 157 ~~s~ 160 (187)
.+|-
T Consensus 210 tesr 213 (224)
T KOG3260|consen 210 TESR 213 (224)
T ss_pred HHhh
Confidence 8763
No 23
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.15 E-value=3.6e-10 Score=76.52 Aligned_cols=72 Identities=29% Similarity=0.438 Sum_probs=65.0
Q ss_pred EEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC------CCceEEEEEeccccccccCceEEecCceEEEEEE
Q 029799 9 WAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA------ENHLYELKLELFDKVNVEESKINVGVRSIFCIVE 80 (187)
Q Consensus 9 WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~------~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~Lk 80 (187)
|+|+.+.|+|+|.+++. +++.|.++.+ .|.|++.... ....|.+.+.|+++|+|+++++++.++.|+|.|+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 99999999999999997 6899999987 9999987532 2478999999999999999999999999999998
Q ss_pred e
Q 029799 81 K 81 (187)
Q Consensus 81 K 81 (187)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 24
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=98.95 E-value=7.3e-11 Score=84.93 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=29.0
Q ss_pred ecCCCccc-----ccccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhccchHHHHHHcCCCc
Q 029799 103 VDWDKWVD-----EDEDNGAGDLDLGGMDFSNFGGMGGDDGMGGFEDSDDEVSKPQQEVRKAGDTN 163 (187)
Q Consensus 103 vDwdkw~d-----Edeeee~~~~~~~~~df~~~~~~gg~~~~~~~d~~dD~~~am~~~~~~s~gt~ 163 (187)
.+|+++.. +.+++++++++++.| |++||. +.+||.+|||+|||.|||||.
T Consensus 2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~l-fkkiY~----------~gDDe~KRam~KSf~ES~GT~ 56 (82)
T PF05002_consen 2 KNWDKLTKKKEKEEEDDEEDPEASLMNL-FKKIYD----------NGDDEMKRAMMKSFTESQGTV 56 (82)
T ss_dssp ---SSSBHH--------------SHHHH-HHHHHT----------TS-SCHHHHHHHHHHCT----
T ss_pred CChHHccccccccccccccCchHHHHHH-HHHHHc----------cCCHHHHHHHHHHHHHcCCcc
Confidence 46777661 122233445678999 999998 999999999999999999985
No 25
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.17 E-value=4.3e-06 Score=76.54 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=71.5
Q ss_pred CCCCCCeEEEecCCeEEEEEEcCCC---CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEec-CceEE
Q 029799 1 MSRVPEVKWAQRQDKVFITVQLPDA---KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVG-VRSIF 76 (187)
Q Consensus 1 Ms~~P~v~WaQ~~~~V~lTI~lkd~---kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~-~~kIe 76 (187)
|-.+|.|.|.|+.+.+.+++.++.. +++.|.+-++ +|.+... -+-.|+.+||+.|..|.|.|.|. .++++
T Consensus 286 ~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~-~v~v~~~-----dh~~~~g~lyasv~he~s~~ii~ean~Le 359 (596)
T KOG4379|consen 286 NGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKT-TVVVKHL-----DHVIFDGELYASVGHELSAFIIAEANGLE 359 (596)
T ss_pred ccCCccceeeeccCcceEEEecccccccceEEEEecCc-eEEEEee-----eeEEeccchhhhccccchhhhhhhhccce
Confidence 4468999999999999999999963 4667777776 6666653 24568889999999999999995 59999
Q ss_pred EEEEeCCC-CcccceecCC
Q 029799 77 CIVEKAEK-GWWKKLLRGD 94 (187)
Q Consensus 77 I~LkKk~~-~~WprL~k~~ 94 (187)
+.|.|+.. ..||||...+
T Consensus 360 ~sl~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 360 LSLTKADEIQTWPRLFAQD 378 (596)
T ss_pred EEEeecccccccchheeec
Confidence 99999954 5799998554
No 26
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00025 Score=55.62 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=68.5
Q ss_pred CCCCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC--------------CceEEEEEeccccccccCc
Q 029799 3 RVPEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE--------------NHLYELKLELFDKVNVEES 66 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~--------------g~~Y~~~leLf~eI~peeS 66 (187)
..|.|..+++.+.+.|++.|+++ ++++|.+..+ .|++++..... ...|+-.+.|...|+|+..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 46999999999999999999998 4789999987 99999974221 2467788999999999977
Q ss_pred eEEecCceEEEEEEeCCC
Q 029799 67 KINVGVRSIFCIVEKAEK 84 (187)
Q Consensus 67 ~~kv~~~kIeI~LkKk~~ 84 (187)
+-+....-+.|+|.|..+
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 777888888999999764
No 27
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.69 E-value=0.00056 Score=49.38 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=60.9
Q ss_pred CeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC----C----------CceEEEEEeccccccccCceEE
Q 029799 6 EVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA----E----------NHLYELKLELFDKVNVEESKIN 69 (187)
Q Consensus 6 ~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~----~----------g~~Y~~~leLf~eI~peeS~~k 69 (187)
+++|+.+.+.+.|.+.+|++ ++++|.+..++.|++++.... . ...|.-.+.|-..|+++..+-+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47899999999999999998 478888875337999986211 0 1257778899999999988888
Q ss_pred ecCceEEEEEEe
Q 029799 70 VGVRSIFCIVEK 81 (187)
Q Consensus 70 v~~~kIeI~LkK 81 (187)
....-+.|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 888888999976
No 28
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.43 E-value=0.002 Score=46.33 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC------C----------CceEEEEEeccccccccCc
Q 029799 5 PEVKWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA------E----------NHLYELKLELFDKVNVEES 66 (187)
Q Consensus 5 P~v~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~------~----------g~~Y~~~leLf~eI~peeS 66 (187)
|+++++++.+.+.|.+.+|++ ++++|.+..+ .|++++.... . -..|.-.+.|- .|+++..
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 578999999999999999998 4789999877 9999886321 0 01244456664 7999888
Q ss_pred eEEecCceEEEEEEe
Q 029799 67 KINVGVRSIFCIVEK 81 (187)
Q Consensus 67 ~~kv~~~kIeI~LkK 81 (187)
+.++....+.|+|.|
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 888888888999876
No 29
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.38 E-value=0.002 Score=44.73 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=60.6
Q ss_pred EEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC-------------CceEEEEEeccccccccCceEEecCc
Q 029799 9 WAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE-------------NHLYELKLELFDKVNVEESKINVGVR 73 (187)
Q Consensus 9 WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~-------------g~~Y~~~leLf~eI~peeS~~kv~~~ 73 (187)
++++.+.+.|.|.++++ ++++|.+..+ .|.+++..... ...|.-.+.|-..|+++..+..+...
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 67888999999999998 4788999887 99999874211 35688899999999999999998888
Q ss_pred eEEEEEEe
Q 029799 74 SIFCIVEK 81 (187)
Q Consensus 74 kIeI~LkK 81 (187)
.+.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 88999876
No 30
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.27 E-value=0.0081 Score=43.53 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=59.4
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeC---CCC---------ceEEEEEeccccccccCceEEecCc
Q 029799 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAG---AEN---------HLYELKLELFDKVNVEESKINVGVR 73 (187)
Q Consensus 8 ~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~---~~g---------~~Y~~~leLf~eI~peeS~~kv~~~ 73 (187)
+|.++.+.+.|.+.+++. ++++|.+..+ .|.+++... ..+ ..|.-.+.|-..|+++..+.++...
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 588999999999999997 5889999877 999998743 111 3566788899999999999999888
Q ss_pred eEEEEEEeCCC
Q 029799 74 SIFCIVEKAEK 84 (187)
Q Consensus 74 kIeI~LkKk~~ 84 (187)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999753
No 31
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.41 E-value=0.029 Score=39.61 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=54.4
Q ss_pred CeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCCC-------ceEEEEEeccccccccCceEEecC-ceEEEEEEe
Q 029799 14 DKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAEN-------HLYELKLELFDKVNVEESKINVGV-RSIFCIVEK 81 (187)
Q Consensus 14 ~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~g-------~~Y~~~leLf~eI~peeS~~kv~~-~kIeI~LkK 81 (187)
+.+.|++.+++. ++++|.+..+ .|++++...... ..|.-.+.|-..|+++..+.++.. ..+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 478999999997 4799999876 999999732211 367778899999999998888887 888998876
No 32
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.24 E-value=0.07 Score=38.31 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=57.4
Q ss_pred EEEecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC---C----ceEEEEEeccccccccCceEEec-CceEEE
Q 029799 8 KWAQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE---N----HLYELKLELFDKVNVEESKINVG-VRSIFC 77 (187)
Q Consensus 8 ~WaQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~---g----~~Y~~~leLf~eI~peeS~~kv~-~~kIeI 77 (187)
.++.+.+.+.|++.++++ ++++|++..+ .|++++..... . ..|.-.+.|-..|++++.+-++. ...+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 578899999999999998 4789999877 99999975321 1 24666788899999999998886 777777
Q ss_pred EEE
Q 029799 78 IVE 80 (187)
Q Consensus 78 ~Lk 80 (187)
.|.
T Consensus 83 ~lP 85 (86)
T cd06475 83 EAP 85 (86)
T ss_pred Eec
Confidence 763
No 33
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.20 E-value=0.058 Score=38.71 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=56.2
Q ss_pred EecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEe-cCceEEEEE
Q 029799 10 AQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINV-GVRSIFCIV 79 (187)
Q Consensus 10 aQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~--~g-----~~Y~~~leLf~eI~peeS~~kv-~~~kIeI~L 79 (187)
+.+.+.+.|++.++++ ++++|++..+ .|++++.... .+ .+|.-.+.|-..|++++-+-++ ....+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 4577889999999998 4789999877 9999987421 11 2355577899999999999998 578889998
Q ss_pred Ee
Q 029799 80 EK 81 (187)
Q Consensus 80 kK 81 (187)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 34
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.09 E-value=0.14 Score=36.79 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=54.8
Q ss_pred CCeEEEecC-CeEEEEEEcCCCC--cceEEEecCcEEEEEEEeCCC-------------CceEEEEEeccccccccCceE
Q 029799 5 PEVKWAQRQ-DKVFITVQLPDAK--NAKVNLEPEGVFSFSASAGAE-------------NHLYELKLELFDKVNVEESKI 68 (187)
Q Consensus 5 P~v~WaQ~~-~~V~lTI~lkd~k--d~kV~~~~~~~l~f~~~~~~~-------------g~~Y~~~leLf~eI~peeS~~ 68 (187)
|++.=+++. +.+.|++.+|+++ +++|.+..+ .|++++..... -..|.-.+.|-..|+++ +.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 566667765 8999999999984 788888876 99999763211 13477778888888885 55
Q ss_pred EecCceEEEEEEe
Q 029799 69 NVGVRSIFCIVEK 81 (187)
Q Consensus 69 kv~~~kIeI~LkK 81 (187)
+.....+.|+|.+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 6677778888753
No 35
>PRK10743 heat shock protein IbpA; Provisional
Probab=95.96 E-value=0.15 Score=39.88 Aligned_cols=75 Identities=11% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCeEEEe-cCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC--CC----------ceEEEEEeccccccccCceEE
Q 029799 5 PEVKWAQ-RQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA--EN----------HLYELKLELFDKVNVEESKIN 69 (187)
Q Consensus 5 P~v~WaQ-~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~--~g----------~~Y~~~leLf~eI~peeS~~k 69 (187)
|++.-++ +.+.+.|++.|+++ +++.|.++.+ .|++++.... .+ ..|.-.+.|-..|++++ -+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 8889985 89999999999998 4789999876 9999986321 11 13555778889999984 55
Q ss_pred ecCceEEEEEEeC
Q 029799 70 VGVRSIFCIVEKA 82 (187)
Q Consensus 70 v~~~kIeI~LkKk 82 (187)
....-+.|+|.|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 5677889999995
No 36
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=95.79 E-value=0.11 Score=37.10 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=55.5
Q ss_pred cCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEec-CceEEEEEEe
Q 029799 12 RQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINVG-VRSIFCIVEK 81 (187)
Q Consensus 12 ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~--~g-----~~Y~~~leLf~eI~peeS~~kv~-~~kIeI~LkK 81 (187)
+.+.+.|++.+++. ++++|++..+ .|++++.... .+ .+|.-.+.|-..|+++.-+-++. ...+.|+|.|
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 46788999999997 4789999977 9999996421 11 23666678989999999999995 7888999988
Q ss_pred C
Q 029799 82 A 82 (187)
Q Consensus 82 k 82 (187)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 5
No 37
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=95.78 E-value=0.11 Score=37.13 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=55.7
Q ss_pred ecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC-CC---ceEEEEEeccccccccCceEEe-cCceEEEEEEe
Q 029799 11 QRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA-EN---HLYELKLELFDKVNVEESKINV-GVRSIFCIVEK 81 (187)
Q Consensus 11 Q~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~-~g---~~Y~~~leLf~eI~peeS~~kv-~~~kIeI~LkK 81 (187)
.+.+.+.|++.+++. ++++|++..+ .|++++.... .+ ..|.-.+.|-..|+|+..+-++ ....+.|++++
T Consensus 5 e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 5 TLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 467789999999997 4789999977 9999986311 12 3577778899999999999997 67888998864
No 38
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=95.61 E-value=0.13 Score=36.52 Aligned_cols=70 Identities=6% Similarity=0.082 Sum_probs=54.2
Q ss_pred ecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC--CC-----ceEEEEEeccccccccCceEEec-CceEEEEEE
Q 029799 11 QRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA--EN-----HLYELKLELFDKVNVEESKINVG-VRSIFCIVE 80 (187)
Q Consensus 11 Q~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~--~g-----~~Y~~~leLf~eI~peeS~~kv~-~~kIeI~Lk 80 (187)
.+.+.+.|++.+++. ++++|++..+ .|++++.... .+ .+|.-.+.|-..|++++.+-++. ...+.|++.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 356789999999997 4789999877 9999986421 11 23566678889999998888884 777899887
Q ss_pred e
Q 029799 81 K 81 (187)
Q Consensus 81 K 81 (187)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 6
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=95.28 E-value=0.41 Score=37.77 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCCeEEEe-cCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC--CC----------ceEEEEEeccccccccCceE
Q 029799 4 VPEVKWAQ-RQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA--EN----------HLYELKLELFDKVNVEESKI 68 (187)
Q Consensus 4 ~P~v~WaQ-~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~--~g----------~~Y~~~leLf~eI~peeS~~ 68 (187)
.|.+.=++ +.+.+.|++.|+++ +++.|.++.+ .|++++.... .+ ..|.-.+.|-..|+++ +-
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 47788887 46789999999998 4789999876 9999986211 11 2366667788899997 45
Q ss_pred EecCceEEEEEEeC
Q 029799 69 NVGVRSIFCIVEKA 82 (187)
Q Consensus 69 kv~~~kIeI~LkKk 82 (187)
+....-+.|+|.|.
T Consensus 109 ~~~nGVL~I~lPK~ 122 (142)
T PRK11597 109 TFVNGLLHIDLIRN 122 (142)
T ss_pred EEcCCEEEEEEecc
Confidence 56777889999986
No 40
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.24 E-value=0.14 Score=44.48 Aligned_cols=63 Identities=16% Similarity=0.368 Sum_probs=52.2
Q ss_pred CCeEEEEEEcCCC---CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEe--cCceEEEEEE
Q 029799 13 QDKVFITVQLPDA---KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINV--GVRSIFCIVE 80 (187)
Q Consensus 13 ~~~V~lTI~lkd~---kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv--~~~kIeI~Lk 80 (187)
...|.|+|.++++ +++.+++.++ .|.+.+. +..|.|+|.|-.+|+++.++-+. ..+.+.|+|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~----~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSP----KPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeC----CCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5789999999986 5789999988 9999874 22799999999999999987776 4467788874
No 41
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=94.49 E-value=0.31 Score=34.78 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=52.6
Q ss_pred CCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC----CC---ceEEEEEeccccccccCceEEec-CceEEEEEEe
Q 029799 13 QDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA----EN---HLYELKLELFDKVNVEESKINVG-VRSIFCIVEK 81 (187)
Q Consensus 13 ~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~----~g---~~Y~~~leLf~eI~peeS~~kv~-~~kIeI~LkK 81 (187)
.+...|++.+++. ++++|++..+ .|++++.... .+ .+|.-.+.|-..|+|+.-+-++. ...+.|+|.|
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 4678889999997 4789999977 9999997421 11 23555677889999999999886 7888998865
No 42
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=94.31 E-value=0.41 Score=34.35 Aligned_cols=66 Identities=8% Similarity=0.133 Sum_probs=49.5
Q ss_pred CCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC----C-C------ceEEEEEeccccccccCceEEe-cCceEEEE
Q 029799 13 QDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA----E-N------HLYELKLELFDKVNVEESKINV-GVRSIFCI 78 (187)
Q Consensus 13 ~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~----~-g------~~Y~~~leLf~eI~peeS~~kv-~~~kIeI~ 78 (187)
++.+.|++.+++. ++++|++..+ .|+|++.... + + ..|.-.+.|-..|+++..+-.+ ....+.|.
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 5678999999997 5889999876 9999987321 1 1 2355567788999999888888 55666776
Q ss_pred E
Q 029799 79 V 79 (187)
Q Consensus 79 L 79 (187)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 5
No 43
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=89.97 E-value=4.7 Score=28.77 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=47.9
Q ss_pred cCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC----CC---ceEEEEEeccccccccCceEEe-cCceEEEE
Q 029799 12 RQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA----EN---HLYELKLELFDKVNVEESKINV-GVRSIFCI 78 (187)
Q Consensus 12 ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~----~g---~~Y~~~leLf~eI~peeS~~kv-~~~kIeI~ 78 (187)
+.+...|++.+++. ++++|++..+ .|++++.... .+ ..|.-.+.|-..|+++..+-++ ....+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 45678899999997 4799999977 9999997422 11 1344456788899998888776 45555554
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=88.91 E-value=4.5 Score=29.17 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCC-----CCce-----EEEEEeccccccccCceEEecCc-eEEE
Q 029799 13 QDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGA-----ENHL-----YELKLELFDKVNVEESKINVGVR-SIFC 77 (187)
Q Consensus 13 ~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~-----~g~~-----Y~~~leLf~eI~peeS~~kv~~~-kIeI 77 (187)
.+.++|++.||+. ++++|++..+ .|+|++.... ...+ |.-.+.|-..|++++.+-+.... .|.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 4679999999998 4799999976 9999997321 1112 33456788889999888777554 5555
No 45
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=84.43 E-value=12 Score=30.69 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEEecCC-eEEEEEEcCCCC--c-ceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029799 8 KWAQRQD-KVFITVQLPDAK--N-AKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (187)
Q Consensus 8 ~WaQ~~~-~V~lTI~lkd~k--d-~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~ 83 (187)
.=.++.+ .|.|...||++. + +.|.|..+ ...+.+.. +..|.=.+.|-.+ .++..++++...-++|+|++.+
T Consensus 95 dtre~dDge~~VvAdLPGVs~dd~idV~l~~d-~~~L~i~~---~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~ 169 (177)
T PF05455_consen 95 DTRERDDGELVVVADLPGVSDDDAIDVTLDDD-EGALTIRV---GEKYLKRVALPWP-DPEITSATFNNGILEIRIRRTE 169 (177)
T ss_pred eeEecCCCcEEEEEeCCCCCcccceeeEeecC-CceEEEec---CCceEeeEecCCC-ccceeeEEEeCceEEEEEeecC
Confidence 3344556 688999999984 4 67888765 44444431 2346567777777 4666677778788899999975
No 46
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=81.63 E-value=17 Score=26.43 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=48.2
Q ss_pred CCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC----C---ceEEEEEeccccccccCceEEec-CceEEEEE
Q 029799 13 QDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE----N---HLYELKLELFDKVNVEESKINVG-VRSIFCIV 79 (187)
Q Consensus 13 ~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~----g---~~Y~~~leLf~eI~peeS~~kv~-~~kIeI~L 79 (187)
.+.-.|.+.+.+. ++++|++..+ .|.|++++... + ..|.-.+.|-..|+++.-+-.+. ...+.|.+
T Consensus 14 ~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 14 SEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4456678888886 5899999877 99999985321 1 34555677889999998888887 55566654
No 47
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.89 E-value=7.8 Score=35.93 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCeEEEEEEcCCCCcceEEE--ecCcEEEEEEEeCCCCceEEEEEeccccccccCc---eEEecCceEEE
Q 029799 3 RVPEVKWAQRQDKVFITVQLPDAKNAKVNL--EPEGVFSFSASAGAENHLYELKLELFDKVNVEES---KINVGVRSIFC 77 (187)
Q Consensus 3 ~~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~--~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS---~~kv~~~kIeI 77 (187)
++|++.-.|..+.++|.|..+-.+-.++++ ... -+.|++. +|-+.+.+-+.+..+.. +|-..+..+.|
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~n-m~~f~~~------pyflrl~~p~~~~~d~~~n~s~d~kd~~~~v 74 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAAN-MASFSAG------PYFLRLAGPGMVEDDARPNASYDAKDGYAHV 74 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhh-hhhhccc------hhHHhhcCcchhhhhccccCccccccceeEE
Confidence 789999999999999999999655444444 333 6777763 57778888888776654 35567788999
Q ss_pred EEEeCCC-Ccccce
Q 029799 78 IVEKAEK-GWWKKL 90 (187)
Q Consensus 78 ~LkKk~~-~~WprL 90 (187)
++.|..+ ++.+-|
T Consensus 75 K~~K~~~~e~F~~L 88 (466)
T KOG3247|consen 75 KVPKFHPGEHFSDL 88 (466)
T ss_pred eecCCCccccccch
Confidence 9999765 356655
No 48
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=42.61 E-value=55 Score=22.56 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.5
Q ss_pred ceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029799 49 HLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (187)
Q Consensus 49 ~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~ 83 (187)
..|.+.++|-+ +.|++-.+.+.++.|.|.-++..
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEee
Confidence 57999999998 99999999999999999998864
No 49
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=39.34 E-value=1.5e+02 Score=21.52 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCeEEEecC-CeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEE-EEeccccccccCceEEe
Q 029799 5 PEVKWAQRQ-DKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYEL-KLELFDKVNVEESKINV 70 (187)
Q Consensus 5 P~v~WaQ~~-~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~-~leLf~eI~peeS~~kv 70 (187)
|..-|+-=. ..|-|-|+=+++...+|.++.. .|++.-....++.+|.| .|++- ...|..-.+.+
T Consensus 4 P~~WW~GMk~~~LQLmvyG~nI~~~~v~i~~~-gV~i~~v~~~~npNYLFv~L~i~-~akpg~~~i~~ 69 (88)
T PF09087_consen 4 PPNWWVGMKNPELQLMVYGKNIASAEVSISYP-GVTIKKVVKTDNPNYLFVYLDIS-DAKPGTFTINF 69 (88)
T ss_dssp SSEEETT-SS-EEEEEEESTTGGGSEEEE-BT-TEEEEEEEE-SSTTEEEEEEEE--T--SEEEEEEE
T ss_pred CCchhcCCCCCcEEEEEecCCcccCEEEEeCC-CeEEEEEEecCCCCEEEEEEecC-CCCCcEEEEEE
Confidence 566665443 3688888889998899999865 57776655556777865 46665 66665444444
No 50
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=38.24 E-value=67 Score=21.48 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=30.9
Q ss_pred CceEEEEEeccccccccCceEEecCceEEEEEEeCCC
Q 029799 48 NHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEK 84 (187)
Q Consensus 48 g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~~ 84 (187)
+..|.+.++|-+ +.|++-.+.+.++.|.|.-++...
T Consensus 6 ~~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 6 DDAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEecc
Confidence 357999999988 899999999999999999888653
No 51
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=38.13 E-value=98 Score=20.52 Aligned_cols=52 Identities=12% Similarity=0.260 Sum_probs=24.7
Q ss_pred CCCeEEEecCCeEEEEEEcCCC-CcceEEEecCcEEEEEEEeCCCCceEEEEEe
Q 029799 4 VPEVKWAQRQDKVFITVQLPDA-KNAKVNLEPEGVFSFSASAGAENHLYELKLE 56 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~-kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~le 56 (187)
.|.+.|+......... ..... ....+.+.++++|.|......+.-.|.+...
T Consensus 12 ~P~v~W~~~~~~~~~~-~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 64 (79)
T cd05734 12 PPTIVWKHSKGRGHPQ-HTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVS 64 (79)
T ss_pred CCEEEEEECCCccccc-cccccccCCCEEEecCCeEEECcCCcccCEEEEEEEE
Confidence 5889998754432111 11111 2223443344466665432233346777654
No 52
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=36.56 E-value=9.9 Score=24.70 Aligned_cols=9 Identities=89% Similarity=1.904 Sum_probs=7.7
Q ss_pred eecCCCccc
Q 029799 102 KVDWDKWVD 110 (187)
Q Consensus 102 kvDwdkw~d 110 (187)
++||++|+-
T Consensus 17 kvdWd~wvS 25 (49)
T PF06543_consen 17 KVDWDKWVS 25 (49)
T ss_pred ccchHHhee
Confidence 689999983
No 53
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=35.72 E-value=82 Score=23.92 Aligned_cols=44 Identities=2% Similarity=0.173 Sum_probs=27.7
Q ss_pred CcceEEEecCcEEEEEEEeCCCCceEEEEEeccccccccCceEEecCceEEEEEEeC
Q 029799 26 KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKA 82 (187)
Q Consensus 26 kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk 82 (187)
..+.++|.++|+|++++. .++.. .. ...+|++.+++|.++|+=.
T Consensus 34 ~~~~leF~~dGKL~v~~g--nng~~----~~-------~~Gty~L~G~kLtL~~~p~ 77 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIG--EKGKE----VK-------ADGTYKLDGNKLTLTLKAG 77 (111)
T ss_pred CceEEEEcCCCeEEEecC--CCCcE----ec-------cCceEEEECCEEEEEEcCC
Confidence 467888888888888874 22221 11 1357888777776665543
No 54
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=32.01 E-value=1.7e+02 Score=19.94 Aligned_cols=58 Identities=9% Similarity=0.256 Sum_probs=28.9
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccc
Q 029799 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKV 61 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~le-Lf~eI 61 (187)
.|.+.|+.....+.+...-.......+.+...+.|.|.-....+.-.|.|... -++.+
T Consensus 15 ~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 15 QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce
Confidence 47899987655433221101112334555444467776442223346877764 45543
No 55
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=31.50 E-value=1.4e+02 Score=20.94 Aligned_cols=50 Identities=6% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe
Q 029799 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE 56 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~le 56 (187)
+|.|.||+....|.-+.. .....-.+... +.|.|......+|..|.|...
T Consensus 14 ~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~--s~L~~~~~~~Ddg~~~~C~A~ 63 (80)
T cd05885 14 AATLRWYRDRKELKGVIS-QQENGKTVSVS--NTIRFPVDRKDDGAILSCEAS 63 (80)
T ss_pred CCeEEEEECCEECCCCcc-cccCCceEEEE--EEEEEEeeeccCCcEEEEEEE
Confidence 468999999887632211 11111122222 258888776667888888764
No 56
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=30.86 E-value=2.9e+02 Score=22.34 Aligned_cols=67 Identities=9% Similarity=0.107 Sum_probs=47.8
Q ss_pred EEEEEEcCC--CCcceEEEecCcEEEEEEEeCCC----C---ceEEEEEeccccccccCceEEecC-ceEEEEEEeCC
Q 029799 16 VFITVQLPD--AKNAKVNLEPEGVFSFSASAGAE----N---HLYELKLELFDKVNVEESKINVGV-RSIFCIVEKAE 83 (187)
Q Consensus 16 V~lTI~lkd--~kd~kV~~~~~~~l~f~~~~~~~----g---~~Y~~~leLf~eI~peeS~~kv~~-~kIeI~LkKk~ 83 (187)
.-|.+.+.. .++++|++..+ .|.|.+++... | .+|.=.+.|-..|+|+.-+-.+.. ..+.|...|..
T Consensus 74 F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 74 FEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 344555554 36889999877 99999986432 2 345556779999999988888865 56688877754
No 57
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=30.74 E-value=1.5e+02 Score=21.50 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCC-CceEEEEEe
Q 029799 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAE-NHLYELKLE 56 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~-g~~Y~~~le 56 (187)
.|.|.|. +.....|+ .+..|.+..+|.|.|+-....+ |..|.|...
T Consensus 33 ~P~i~W~-~~~~~~i~------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 33 PLRIYWM-NSDLLHIT------QDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CCEEEEE-CCCCcccc------ccccEEECCCceEEEEEEehhhCCCCeEEEEE
Confidence 4789999 44433332 2455677666789998763233 336887765
No 58
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=1.4e+02 Score=24.42 Aligned_cols=79 Identities=28% Similarity=0.410 Sum_probs=56.2
Q ss_pred CeEE--EecCCeEEEEEEcCCC--CcceEEEecCcEEEEEEEeCCC----------------CceEEEEEeccccccccC
Q 029799 6 EVKW--AQRQDKVFITVQLPDA--KNAKVNLEPEGVFSFSASAGAE----------------NHLYELKLELFDKVNVEE 65 (187)
Q Consensus 6 ~v~W--aQ~~~~V~lTI~lkd~--kd~kV~~~~~~~l~f~~~~~~~----------------g~~Y~~~leLf~eI~pee 65 (187)
++.| ..+.+...+.+.+++. .+++|++...+.+.+++..... -..|.-.+.|-..|+.++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 4567 7888888889999987 4789999876337777652110 013455567778887777
Q ss_pred ceEEecCceEEEEEEeCCC
Q 029799 66 SKINVGVRSIFCIVEKAEK 84 (187)
Q Consensus 66 S~~kv~~~kIeI~LkKk~~ 84 (187)
-+..+...-+.|++.|..+
T Consensus 164 ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHhhCCeEEEEEecccc
Confidence 7777777778888888654
No 59
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=26.51 E-value=1.4e+02 Score=20.78 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=29.8
Q ss_pred CceEEEEEeccccccccCceEEecCceEEEEEEeCC
Q 029799 48 NHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAE 83 (187)
Q Consensus 48 g~~Y~~~leLf~eI~peeS~~kv~~~kIeI~LkKk~ 83 (187)
+..|.+.++|-+ |.+++-.+.+.++.|.|.-++..
T Consensus 9 ~~~~~i~~~lPG-v~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 9 DDEYIVEADLPG-FKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEcc
Confidence 567999999987 89999999998898999888753
No 60
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=25.28 E-value=2.1e+02 Score=18.84 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=10.5
Q ss_pred EEEEEEEeCCCCceEEEEEe
Q 029799 37 VFSFSASAGAENHLYELKLE 56 (187)
Q Consensus 37 ~l~f~~~~~~~g~~Y~~~le 56 (187)
.|.|......+.-.|.|...
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~ 71 (86)
T cd05724 52 NLLIAEARKSDEGTYKCVAT 71 (86)
T ss_pred EEEEeECCcccCEEEEEEEE
Confidence 56665442233346777664
No 61
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.25 E-value=2.7e+02 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=23.7
Q ss_pred EEeccccccccCceEEecCceEEEEEEeCCC
Q 029799 54 KLELFDKVNVEESKINVGVRSIFCIVEKAEK 84 (187)
Q Consensus 54 ~leLf~eI~peeS~~kv~~~kIeI~LkKk~~ 84 (187)
+.+|-.+..|+.-++++.++++.+++.|+..
T Consensus 107 evkl~ve~l~~~ltvsV~P~~~~Vti~kk~t 137 (403)
T COG4856 107 EVKLQVEGLPDGLTVSVNPEKATVTIEKKVT 137 (403)
T ss_pred EeeeEeecCCCCceEEEccceeEEEEeeeeE
Confidence 4455567788888888888888888888653
No 62
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=25.08 E-value=2e+02 Score=18.65 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCcceEEEecCcEEEEEEEeCCCCceEEEEEe-ccccc
Q 029799 4 VPEVKWAQRQDKVFITVQLPDAKNAKVNLEPEGVFSFSASAGAENHLYELKLE-LFDKV 61 (187)
Q Consensus 4 ~P~v~WaQ~~~~V~lTI~lkd~kd~kV~~~~~~~l~f~~~~~~~g~~Y~~~le-Lf~eI 61 (187)
.|.+.|+.....-...+..++.....+.+...+.|.|.-....+.-.|.+... .++.+
T Consensus 15 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 15 PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE
Confidence 47899997632100111112111112222222256655432234456777754 55553
Done!