BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029802
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4QND5|NIP7_XENTR 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus
tropicalis GN=nip7 PE=2 SV=1
Length = 180
Score = 243 bits (620), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 141/187 (75%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL + ET A+FEKL K+ G N+K +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K ATNIAR KLVSLGTC GKFT KF L + AL +A A++KVW+KP +E SFLYGNH
Sbjct: 53 KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+D+PLGFGVAAKS Q+CRKLDP IVV HQ+D+GEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 172
Query: 181 LRMEDEL 187
+R ED L
Sbjct: 173 IRHEDTL 179
>sp|Q6DFH9|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus
laevis GN=nip7 PE=2 SV=1
Length = 180
Score = 243 bits (619), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 140/187 (74%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL + ET A+FEKL K+ G N+K +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K ATNIAR KLVS GTC GKFT KF L + AL +A A++KVW+KP +E SFLYGNH
Sbjct: 53 KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+DVPLGFGVAAKS Q+CRKLDP IVV HQ+D+GEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 172
Query: 181 LRMEDEL 187
+R ED L
Sbjct: 173 IRHEDTL 179
>sp|Q4T2X8|NIP7_TETNG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon
nigroviridis GN=nip7 PE=3 SV=1
Length = 180
Score = 239 bits (611), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL E ET +FEKL K+ G N+K +V+ P G YCFRLH +RVYY+SE ++
Sbjct: 1 MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K ATNIAR KLVS+GTC GKFT KF L I AL +A A+ KVW+KP +E SFLYGNH
Sbjct: 53 KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ A GVVVYSM+DVPLGFGVAAKS Q+CR++DP IVV HQ+D+GE+
Sbjct: 113 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 172
Query: 181 LRMEDEL 187
+R ED L
Sbjct: 173 IRNEDSL 179
>sp|Q9WV50|NIP7_RAT 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus
norvegicus GN=Nip7 PE=2 SV=1
Length = 180
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL E ET +FEK+ K+ G NL+ +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K A NI+ KLVSLGTC GKFT KF L + AL +A A++KVWIKP +E SFLYGNH
Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+DVPLGFGVAAKS QDCRK+DP IVV HQ+DIGEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 172
Query: 181 LRMEDEL 187
+R E+ L
Sbjct: 173 IRHEETL 179
>sp|Q5R9J1|NIP7_PONAB 60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo
abelii GN=NIP7 PE=2 SV=1
Length = 180
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL E ET +FEK+ K+ G NL+ +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K A NI+ KLVSLGTC GKFT KF L + AL +A A++KVWIKP +E SFLYGNH
Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+D+PLGFGVAAKS QDCRK+DP IVV HQ+DIGEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 172
Query: 181 LRMEDEL 187
+R E+ L
Sbjct: 173 VRHEETL 179
>sp|Q9Y221|NIP7_HUMAN 60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo
sapiens GN=NIP7 PE=1 SV=1
Length = 180
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL E ET +FEK+ K+ G NL+ +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K A NI+ KLVSLGTC GKFT KF L + AL +A A++KVWIKP +E SFLYGNH
Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+D+PLGFGVAAKS QDCRK+DP IVV HQ+DIGEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 172
Query: 181 LRMEDEL 187
+R E+ L
Sbjct: 173 VRHEETL 179
>sp|Q56P27|NIP7_PIG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa
GN=NIP7 PE=2 SV=1
Length = 180
Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL E ET +FEK+ K+ G NL+ +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K A NI+ KL+SLGTC GKFT KF L I AL +A A++KVWIKP +E SFLYGNH
Sbjct: 53 KLAANISGDKLMSLGTCFGKFTKTHKFRLHITALDYLAPYAKYKVWIKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+D+PLGFGVAAKS QDCRK+DP IVV HQ+DIGEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 172
Query: 181 LRMEDEL 187
+R E+ L
Sbjct: 173 VRHEETL 179
>sp|Q9CXK8|NIP7_MOUSE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus
musculus GN=Nip7 PE=2 SV=1
Length = 180
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL E ET +FEK+ K+ G NL+ +V+ P G YCFRLH +RVYYVSE ++
Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMML 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K A NI+ KLVSLGTC GKFT KF L + AL +A A++KVW+KP +E SFLYGNH
Sbjct: 53 KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK GLGRIT++ + GVVVYSM+D+PLGFGVAAKS QDCRK+DP IVV HQ+DIGEY
Sbjct: 113 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 172
Query: 181 LRMEDEL 187
+R E+ L
Sbjct: 173 VRHEETL 179
>sp|Q503P2|NIP7_DANRE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Danio rerio
GN=nip7 PE=2 SV=1
Length = 180
Score = 233 bits (594), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 109/187 (58%), Positives = 138/187 (73%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL + ET +FEKL K+ G N+K +++ P G YCFRLH +RVYY+SE ++
Sbjct: 1 MRPLTDEETKTMFEKLSKYIGENIKLLIDRPD--------GTYCFRLHNDRVYYMSEKIL 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K ATN++R KLVS+GTC GKFT KF L I AL +A A+ KVW+KP SE SFLYGNH
Sbjct: 53 KLATNVSRDKLVSVGTCFGKFTKTQKFRLHITALDFLAPYAKFKVWVKPGSEQSFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
++K GLGRIT++ GV+VYSM+DVPLGFGVAA++ Q+CRK+DP IVV HQ+DIGEY
Sbjct: 113 IMKSGLGRITENTDKYQGVLVYSMADVPLGFGVAARTTQECRKVDPMAIVVFHQADIGEY 172
Query: 181 LRMEDEL 187
+R ED L
Sbjct: 173 IRSEDTL 179
>sp|B0G104|NIP7_DICDI 60S ribosome subunit biogenesis protein NIP7 homolog
OS=Dictyostelium discoideum GN=nip7 PE=3 SV=1
Length = 179
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/185 (53%), Positives = 128/185 (69%), Gaps = 8/185 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRP+ E E+ FEKL KF G N+ +++ YCFR+ KN+VYYVSE L+
Sbjct: 1 MRPMTEEESKTFFEKLIKFIGKNVTLLIQRKDEP--------YCFRIQKNKVYYVSEELM 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
KR+ NI R L SLGTC G+FT GKF L I L +A A++KVW+KP+SEMS++YGN+
Sbjct: 53 KRSQNIPREGLCSLGTCFGRFTKTGKFKLNITCLDYLAQYAKYKVWVKPSSEMSWMYGNN 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
+LK GLGRIT+ GVV++SM+DVP+GFGV +KS +CRKLDP +VV H D+GEY
Sbjct: 113 LLKAGLGRITEDTPANQGVVLFSMNDVPIGFGVTSKSTHECRKLDPQALVVYHYGDVGEY 172
Query: 181 LRMED 185
LR ED
Sbjct: 173 LRDED 177
>sp|Q1MTQ9|NIP7_SCHPO 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nip7 PE=3 SV=1
Length = 180
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 126/187 (67%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MRPL ET FEKL ++ G N+ ++++ P DP +CFRL K+RVYYVSE +
Sbjct: 1 MRPLTHEETKTFFEKLAQYIGKNITHLIDRPD----DP----HCFRLQKDRVYYVSERAM 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K AT++AR L+SLG C GKFT KF L I AL +A AR+K+W+K EM FLYGNH
Sbjct: 53 KMATSVARQNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK +GRITD GVV+YSM+D PLGFGV A+S + R+L+P IV HQ+D+GEY
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTAIVAFHQADVGEY 172
Query: 181 LRMEDEL 187
LR ED L
Sbjct: 173 LRDEDTL 179
>sp|Q08962|NIP7_YEAST 60S ribosome subunit biogenesis protein NIP7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NIP7 PE=1
SV=1
Length = 181
Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 131/187 (70%), Gaps = 8/187 (4%)
Query: 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60
MR L E ET VFEKL + G N+ +V+N E P + FRL K+RVYYV + +
Sbjct: 1 MRQLTEEETKVVFEKLAGYIGRNISFLVDNK--ELP------HVFRLQKDRVYYVPDHVA 52
Query: 61 KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120
K AT++ARP L+SLG C+GKFT GKF L I +L+++A +A++K+WIKP EM FLYGNH
Sbjct: 53 KLATSVARPNLMSLGICLGKFTKTGKFRLHITSLTVLAKHAKYKIWIKPNGEMPFLYGNH 112
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180
VLK +G+++D I GV+V++M+DVPLGFGV+AKS + R + P GIV Q+DIGEY
Sbjct: 113 VLKAHVGKMSDDIPEHAGVIVFAMNDVPLGFGVSAKSTSESRNMQPTGIVAFRQADIGEY 172
Query: 181 LRMEDEL 187
LR ED L
Sbjct: 173 LRDEDTL 179
>sp|O30178|Y058_ARCFU UPF0113 protein AF_0058 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0058 PE=3 SV=1
Length = 174
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 75 GTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIA 134
G IG+ G +F +++ + N+R++VW+ EM FLYG + G + R ++
Sbjct: 62 GVKIGEV--GRRFRFSLEGTFWLLRNSRNRVWVNERGEMLFLYGRDIFAGSVERASE-FG 118
Query: 135 PGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEYLRME 184
V V + D LG G + S + L + + V + D GEYLR +
Sbjct: 119 ENSIVFVCNRFDDVLGIGRSRHSSDELSNLPEDKVFVENLVDRGEYLRHQ 168
>sp|P12471|CB21_SOYBN Chlorophyll a-b binding protein, chloroplastic (Fragment)
OS=Glycine max PE=2 SV=1
Length = 245
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 57 ESLVKRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFL 116
E L + G+ I F+ GG +L Q SL+ A + +W M +
Sbjct: 96 ELLARNGVKFGEASWFKAGSQI--FSEGGLDYLGNQ--SLIHAQSILAIWATQVILMGAV 151
Query: 117 YGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGF 151
G + G LG +TD I PG +++D P F
Sbjct: 152 EGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAF 186
>sp|Q890U1|GLMM_CLOTE Phosphoglucosamine mutase OS=Clostridium tetani (strain
Massachusetts / E88) GN=glmM PE=3 SV=1
Length = 448
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 151 FGVAAKSMQDCRKLDPNGIVVLHQSDIGEYLRMEDE 186
+ AK M+D +KLD N +VV S+IG ++ ME E
Sbjct: 262 MAICAKYMKDHKKLDKNTMVVTVMSNIGLFIAMERE 297
>sp|Q60377|Y066_METJA Uncharacterized protein MJ0066 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0066 PE=3 SV=1
Length = 480
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIV 170
VL+ G+ TD I D V++ +D +G G+A S +D + ++ +V
Sbjct: 151 VLRPGIVEFTDDIEEKDDVIIVDENDRVVGVGLAVVSSEDIKNMEKGKVV 200
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRK 163
++ I+ T+ + +G ++ G+ R+ I PGD V ++++ + GVA + ++
Sbjct: 249 RIEIRDTAVDAICHGANLAAPGIVRVEKGIQPGDLVAIFTLKGEAVALGVAKATWKEMLH 308
Query: 164 LDPNGIVV 171
D GI+V
Sbjct: 309 AD-RGIMV 315
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDC 161
K+WIK ++ + +G ++ G+ ++ I GD V + ++ D + G A S Q+
Sbjct: 252 KIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEM 309
>sp|B3Y618|TLR2_MACMU Toll-like receptor 2 OS=Macaca mulatta GN=TLR2 PE=2 SV=1
Length = 784
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 44 CFRLHKNRVYYVSESLVKRATNIARPKLVSLG---------TCIGKFTHGGKFHLTIQAL 94
C L NR+ Y+S S ++R N+ L S G + +G+ H L+ L
Sbjct: 56 CLDLSNNRITYISNSDLQRYVNLQALVLTSNGINTIEEDSFSSLGRLEH---LDLSYNYL 112
Query: 95 SLVAANARHKVWIKPTSEMSFL 116
S ++++ W KP S + FL
Sbjct: 113 SNLSSS-----WFKPLSSLKFL 129
>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type I, chloroplastic
(Fragment) OS=Cucumis sativus PE=2 SV=1
Length = 255
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 81 FTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVV 140
F+ GG +L SLV A + +W M + G + G LG +TD I PG
Sbjct: 128 FSEGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFD 185
Query: 141 VYSMSDVPLGFG-VAAKSMQDCR 162
++D P F + K +++ R
Sbjct: 186 PLGLADDPEAFAELKVKELKNGR 208
>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=truB PE=3 SV=1
Length = 324
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRK 163
+V I ++ + +G + +GG+ + D+IA GD V + ++ +G G A+ S D
Sbjct: 241 RVVILDSAVDAICHGADLARGGIAGLDDNIAWGDTVAIMTLKGELVGVGEASMSALDIAA 300
Query: 164 LDPNGIVV 171
D G+V+
Sbjct: 301 AD-GGLVI 307
>sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max
GN=CAB3 PE=3 SV=1
Length = 263
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 81 FTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVV 140
F+ GG +L SL+ A + +W M + G + G LG +TD I PG
Sbjct: 136 FSEGGLDYLGNP--SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFD 193
Query: 141 VYSMSDVPLGFG-VAAKSMQDCR 162
++D P F + K +++ R
Sbjct: 194 PLGLADDPEAFAELKVKELKNGR 216
>sp|P08222|CB22_CUCSA Chlorophyll a-b binding protein of LHCII type 1 (Fragment)
OS=Cucumis sativus PE=2 SV=1
Length = 206
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 81 FTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVV 140
F+ GG +L SLV A + +W M + G + G LG +TD I PG
Sbjct: 79 FSEGGLDYLGNP--SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFD 136
Query: 141 VYSMSDVPLGFG-VAAKSMQDCR 162
++D P F + K +++ R
Sbjct: 137 PLGLADDPEAFAELKVKELKNGR 159
>sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana
tabacum GN=CAB7 PE=3 SV=1
Length = 267
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 81 FTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVV 140
F+ GG +L SLV A + +W M + G V G LG +TD + PG
Sbjct: 140 FSEGGLDYLGNP--SLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFD 197
Query: 141 VYSMSDVPLGF 151
++D P F
Sbjct: 198 PLGLADDPEAF 208
>sp|A4WH37|TRUB_PYRAR Probable tRNA pseudouridine synthase B OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=truB PE=3 SV=1
Length = 331
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 101 ARH--KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSM 158
ARH K+W++ ++ + +G + G+ + + GD V ++++ +G G A
Sbjct: 235 ARHLPKIWVRDSAVDAVCHGAPLAAPGISKFEVPFSKGDIVAMFTLKGELVGIGRALVDS 294
Query: 159 QDCRKLDPNGIV 170
++ +K++ +V
Sbjct: 295 EEVKKMERGAVV 306
>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus
pyrifolia PE=2 SV=1
Length = 278
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 81 FTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVV 140
F+ GG +L + L+ A + +W M + G V G LG +TD I PG
Sbjct: 151 FSEGGLDYLG--SPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFD 208
Query: 141 VYSMSDVPLGFG-VAAKSMQDCR 162
++D P F V K +++ R
Sbjct: 209 PLGLADDPDAFADVKVKEIKNGR 231
>sp|B1MZN0|DAPH_LEUCK 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
OS=Leuconostoc citreum (strain KM20) GN=dapH PE=3 SV=1
Length = 234
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 107 IKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYS----MSDVPLGFGVAAKSMQDCR 162
I+P S G+HVL G + + + GDG VV + DVP VA + +
Sbjct: 156 IEPASAQPVRIGDHVLVGANAVVIEGVQVGDGAVVAAGAIVTKDVPANTVVAGVPAKIIK 215
Query: 163 KLD 165
++D
Sbjct: 216 QID 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,074,603
Number of Sequences: 539616
Number of extensions: 2919562
Number of successful extensions: 6232
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6191
Number of HSP's gapped (non-prelim): 37
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)