Query 029802
Match_columns 187
No_of_seqs 105 out of 184
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sqw_A Saccharomyces cerevisia 100.0 1.5E-85 5.1E-90 547.4 10.3 179 1-187 1-179 (188)
2 2p38_A Protein involved in rib 100.0 7.5E-62 2.6E-66 396.5 8.3 156 1-183 7-166 (166)
3 1q7h_A Conserved hypothetical 99.9 2.3E-21 8E-26 153.1 12.1 135 3-173 6-140 (153)
4 3d79_A PUA domain, putative un 98.2 6.7E-06 2.3E-10 66.5 10.1 136 3-166 15-159 (179)
5 2q07_A Uncharacterized protein 98.1 1.2E-05 4E-10 70.7 8.8 98 67-172 194-292 (306)
6 2cx0_A Hypothetical protein AP 98.0 1.9E-05 6.6E-10 64.5 7.9 128 3-161 17-152 (187)
7 3r90_A Malignant T cell-amplif 97.9 4.8E-05 1.6E-09 62.4 8.2 142 3-173 16-166 (188)
8 3zv0_C H/ACA ribonucleoprotein 97.5 0.0001 3.5E-09 61.6 4.9 79 103-182 76-157 (195)
9 1iq8_A Archaeosine tRNA-guanin 97.5 0.00024 8.4E-09 67.0 8.0 97 75-172 476-576 (582)
10 2frx_A Hypothetical protein YE 96.8 0.0057 1.9E-07 55.8 9.5 103 43-157 355-458 (479)
11 3m4x_A NOL1/NOP2/SUN family pr 96.2 0.0099 3.4E-07 54.3 7.2 98 43-155 343-441 (456)
12 3u28_A H/ACA ribonucleoprotein 96.1 0.0043 1.5E-07 56.6 4.3 77 104-181 268-347 (400)
13 3m6w_A RRNA methylase; rRNA me 95.2 0.015 5E-07 53.3 4.4 99 43-155 336-445 (464)
14 2aus_C Pseudouridine synthase; 91.2 0.26 8.8E-06 43.5 5.3 64 104-167 252-315 (334)
15 2apo_A Probable tRNA pseudouri 90.7 0.29 1E-05 43.8 5.2 64 104-167 271-334 (357)
16 3c0k_A UPF0064 protein YCCW; P 89.0 0.45 1.5E-05 41.3 4.9 55 104-158 4-59 (396)
17 2j5v_A Glutamate 5-kinase; pro 88.1 0.32 1.1E-05 43.1 3.4 65 102-166 275-340 (367)
18 4dmg_A Putative uncharacterize 67.4 4.6 0.00016 35.6 4.0 53 103-158 6-59 (393)
19 2as0_A Hypothetical protein PH 57.6 6.8 0.00023 33.7 3.2 50 104-158 3-58 (396)
20 3lqv_P Splicing factor 3B subu 50.5 4.6 0.00016 25.7 0.6 12 2-13 21-32 (39)
21 2fho_A Spliceosomal protein SF 43.8 6.3 0.00021 25.9 0.5 13 2-14 20-32 (47)
22 2crg_A Metastasis associated p 38.4 23 0.00077 24.1 2.8 23 1-24 8-30 (70)
23 2eqr_A N-COR1, N-COR, nuclear 37.6 24 0.00081 23.2 2.7 22 1-23 12-33 (61)
24 1x4o_A Splicing factor 4; stru 29.4 28 0.00094 24.3 2.0 22 2-23 10-31 (78)
25 2yqk_A Arginine-glutamic acid 27.8 44 0.0015 22.1 2.8 21 2-23 10-30 (63)
26 1k8w_A TRNA pseudouridine synt 24.1 23 0.00078 31.3 0.9 44 104-154 266-310 (327)
27 2lky_A Uncharacterized protein 24.1 47 0.0016 25.3 2.6 18 2-19 39-56 (112)
28 2b78_A Hypothetical protein SM 22.7 48 0.0016 28.6 2.7 47 104-158 3-55 (385)
29 2kvc_A Putative uncharacterize 22.6 51 0.0018 24.7 2.5 18 2-19 37-54 (103)
30 2o9u_X Monellin chain B and mo 20.9 48 0.0016 24.4 2.0 20 86-110 60-81 (97)
31 2lpe_A Kinase suppressor of RA 20.7 34 0.0012 27.2 1.2 57 3-61 44-101 (149)
No 1
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=100.00 E-value=1.5e-85 Score=547.39 Aligned_cols=179 Identities=64% Similarity=1.067 Sum_probs=175.1
Q ss_pred CCCCCHHHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCceEEEeeCceEEEEcHHHHHhhccCCCCCeeeeeeeEEE
Q 029802 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLVKRATNIARPKLVSLGTCIGK 80 (187)
Q Consensus 1 MR~LteeE~~~vf~KL~kyiG~nl~~li~~~~~~~~~~~d~~y~frl~k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~Gk 80 (187)
|||||++|+++||+||++|||.|++.|++|| |++||||+||+||||||++|++.|++|+|++|+|+||||||
T Consensus 1 mR~Lt~~E~~~vf~kL~~yiG~n~~~li~~~--------~~~~~frl~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gk 72 (188)
T 1sqw_A 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGK 72 (188)
T ss_dssp CEECCHHHHHHHHHHHHHHHGGGTHHHHEET--------TEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhccCHHHHhcCC--------CCceEEEecCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEE
Confidence 9999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred eeecceEEEEeeehHhHhhcccceEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhh
Q 029802 81 FTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQD 160 (187)
Q Consensus 81 FtKs~kFrl~itaL~~La~~a~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~ 160 (187)
|||+|||+|||||+++||||++|||||||+|||+|||||||+|+||+||||++|+++||||+||||+|||||++++|++|
T Consensus 73 ftk~gkF~L~It~l~~La~~~~~kV~Vk~~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e 152 (188)
T 1sqw_A 73 FTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQD 152 (188)
T ss_dssp ECTTSCEEECGGGHHHHGGGCSCEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHH
T ss_pred EecCCcEEEchhHHHHhhhccCcEEEECCCceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCeeEEEecccceeeeccccCC
Q 029802 161 CRKLDPNGIVVLHQSDIGEYLRMEDEL 187 (187)
Q Consensus 161 ~~~~dp~~ivv~~qaD~GeYLR~E~~l 187 (187)
|++++|+++||+||||+|||||+||+|
T Consensus 153 ~~~~~~~~~vv~~q~D~GeYLR~e~~~ 179 (188)
T 1sqw_A 153 CRKVDPMAIVVFHQADIGEYVRHEETL 179 (188)
T ss_dssp HHHSCTTSEEEEEEEEGGGTCSCC---
T ss_pred HHhcCCCcEEEEEcccceeeeEcCcee
Confidence 999999999999999999999999986
No 2
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=100.00 E-value=7.5e-62 Score=396.54 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=144.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCceEEEeeCceEEEEcHHHHHhhccCCCCCeeeeeeeEEE
Q 029802 1 MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLVKRATNIARPKLVSLGTCIGK 80 (187)
Q Consensus 1 MR~LteeE~~~vf~KL~kyiG~nl~~li~~~~~~~~~~~d~~y~frl~k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~Gk 80 (187)
|||||++|++++|+||++|+|.|. |+.+|||+|++|||||++++++.|+++ |++|+|+||||||
T Consensus 7 mR~L~~~E~k~i~~~L~~y~~~~~---------------~~~~~~~~~~~~Vy~v~~~~~~~~~~~-~~~l~s~G~~~Gk 70 (166)
T 2p38_A 7 VRRASSWELDLILKEAEKYGELLH---------------EFFCVVEGKYRDVYAVNEEVWKIIEDI-NMRPYSLGTFVGT 70 (166)
T ss_dssp EEECCHHHHHHHHHHHHTTEEECC---------------CCEEEEESSSEEEEEECHHHHHHTTTC-CCCGGGTEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCc---------------ccEEEEEccCcEEEEECcHHHHHhhcc-CccceEEEEEEEE
Confidence 899999999999999999987552 678999999999999999999999999 9999999999999
Q ss_pred e----eecceEEEEeeehHhHhhcccceEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeee
Q 029802 81 F----THGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAK 156 (187)
Q Consensus 81 F----tKs~kFrl~itaL~~La~~a~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~ak 156 (187)
| ||++||+||||||++| +++++||||+|+|||+|||||||+|+||.++| +|++++|||+||+|.|||||++++
T Consensus 71 ~~~~~t~~~kf~pti~~l~~l-~~~k~kV~V~~~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~~~~~~pLG~G~a~~ 147 (166)
T 2p38_A 71 IRVDENLVEKFYPNLEFFSLI-KLEKNYVILGPKASFLFTTGKDAPKEAVREIK--WQGSKRVVVLNDLGDIIGIGLINP 147 (166)
T ss_dssp EEECTTSCEEEEECHHHHTTE-EECSSEEEECHHHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEECTTSCEEEEEEECT
T ss_pred EEecccCCCeEEEehHHhhhc-cccccEEEECCcceEeeecCCCcchhcceEEe--ecCCCEEEEEECCCcEEEEEEEEE
Confidence 9 8899999999999999 99999999999999999999999999999999 999999999999999999999998
Q ss_pred chhhhhccCCCeeEEEecccceeeecc
Q 029802 157 SMQDCRKLDPNGIVVLHQSDIGEYLRM 183 (187)
Q Consensus 157 st~~~~~~dp~~ivv~~qaD~GeYLR~ 183 (187)
| |+++||+||+|+|||||+
T Consensus 148 s--------~~gkvv~n~~dvGeYLR~ 166 (166)
T 2p38_A 148 K--------SDRRFIKNLKDVGEFLRR 166 (166)
T ss_dssp T--------CSTTSEEEEEC-------
T ss_pred C--------CCCEEEEEcccceeeecC
Confidence 8 899999999999999995
No 3
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=99.86 E-value=2.3e-21 Score=153.14 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCceEEEeeCceEEEEcHHHHHhhccCCCCCeeeeeeeEEEee
Q 029802 3 PLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLVKRATNIARPKLVSLGTCIGKFT 82 (187)
Q Consensus 3 ~LteeE~~~vf~KL~kyiG~nl~~li~~~~~~~~~~~d~~y~frl~k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~GkFt 82 (187)
+|+++|++.++++|.+ .| ++... +..+++|+++.++||++ |.+++ |+
T Consensus 6 ~L~~se~k~l~~~l~~-~g-----~~~~~--------~~~~~~k~~~~~~~~v~------------------g~~l~-f~ 52 (153)
T 1q7h_A 6 FISKKEAKRIWEQMSR-YG-----IDITG--------ESLEVAAQKSASAYYIG------------------GKPMV-FQ 52 (153)
T ss_dssp ECCHHHHHHHHHHHHT-TT-----CCCTT--------CCCEEEECSSCEEEEET------------------TEEEE-EE
T ss_pred cCCHHHHHHHHHHHHH-cC-----CccCC--------CcEEEEEeCCcEEEEEC------------------CEEEE-EE
Confidence 6999999999999999 88 23222 67899999999999996 55666 88
Q ss_pred ecceEEEEeeehHhHhhcccceEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhhhh
Q 029802 83 HGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCR 162 (187)
Q Consensus 83 Ks~kFrl~itaL~~La~~a~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~~~ 162 (187)
+|+|++|++++..+ |++..+|||++.+++..++|.+++..||.++++++++++.|+|+++++.|+|+|+++.|++|++
T Consensus 53 -~g~~~ptl~~l~~l-~~~~~~v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss~e~~ 130 (153)
T 1q7h_A 53 -AGDLIPSVYLLNYR-NPSRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVM 130 (153)
T ss_dssp -SSSEEECHHHHHHS-CCSSSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHH
T ss_pred -CCeeeeehHHHhhC-CccCCEEEECHhHHHHHHcCCCcCccccCcccCceeCCCEEEEEECCCCEEEEEEEecCHHHHH
Confidence 89999999999988 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEe
Q 029802 163 KLDPNGIVVLH 173 (187)
Q Consensus 163 ~~dp~~ivv~~ 173 (187)
+.+ .+++|..
T Consensus 131 ~~~-~G~~v~v 140 (153)
T 1q7h_A 131 ATK-RGKAARI 140 (153)
T ss_dssp HHC-CSEEEEE
T ss_pred hcC-CCeEEEE
Confidence 864 4555443
No 4
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=98.24 E-value=6.7e-06 Score=66.53 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHhhhhccccc-ccccCCCCCCCCCCCCceEEEee-CceEEEEcHHHHHhhccCCCCCeeeeeeeEEE
Q 029802 3 PLDEAETTAVFEKLFKFTGNNLK-NIVENPSHEGPDPNPGRYCFRLH-KNRVYYVSESLVKRATNIARPKLVSLGTCIGK 80 (187)
Q Consensus 3 ~LteeE~~~vf~KL~kyiG~nl~-~li~~~~~~~~~~~d~~y~frl~-k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~Gk 80 (187)
+|+..|.+.+.++|....|...- .++-.. +..-.-+.. +-++|++. |..+.
T Consensus 15 ~lk~sd~k~l~~~l~~qfg~~~~~~l~p~k--------~~v~~~k~~~~~~~~~~d------------------g~pl~- 67 (179)
T 3d79_A 15 PLSKKDVKEIIAQLSQMFGEEIARKMLNKK--------DEVKVAEFDKTTEIILVN------------------DKPMF- 67 (179)
T ss_dssp ECCHHHHHHHHHHHHHHHCHHHHHHHCCTT--------SCEEEEEEETTEEEEEET------------------TEEEE-
T ss_pred cCCHHHHHHHHHHHHHHhCCCchHHhcCCC--------CcEEEEEcCCceEEEEEC------------------CEEEE-
Confidence 58899999999999887775432 233211 222222322 22334332 22222
Q ss_pred eeecceEEEEeeehHhHhhccc------ceEEeCCCCccccccccccccccccccccccCCCCeEEEEec-CCCceeEEe
Q 029802 81 FTHGGKFHLTIQALSLVAANAR------HKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSM-SDVPLGFGV 153 (187)
Q Consensus 81 FtKs~kFrl~itaL~~La~~a~------~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~-nd~pLGfGv 153 (187)
|...|.|-+++.++..+- ... .+|+|.+.+..--+.|.+++-.||..++.++..++-|.|++. ++.++|.|+
T Consensus 68 f~~dg~l~PTl~~l~~~p-~~~p~~~~~~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g~~iavG~ 146 (179)
T 3d79_A 68 IRRKDLIFPLVIALYNLS-DEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYGRPLAIGI 146 (179)
T ss_dssp EEETTEEEECHHHHHHHT-TTSCGGGSTTEEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTCCEEEEEE
T ss_pred EEeCCeEeehHHHHHhCc-hhccccccCCEEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCCeEEEEEE
Confidence 444789999999988764 345 799999998877779999999999999999999999999998 899999999
Q ss_pred eeechhhhhccCC
Q 029802 154 AAKSMQDCRKLDP 166 (187)
Q Consensus 154 ~akst~~~~~~dp 166 (187)
+..|+.|++..+.
T Consensus 147 ~~~ss~e~~~~~k 159 (179)
T 3d79_A 147 ALMSGKVMKEKNR 159 (179)
T ss_dssp ESSCHHHHHHCSS
T ss_pred EEcCHHHHHhcCC
Confidence 9999999987554
No 5
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=98.07 E-value=1.2e-05 Score=70.67 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCCCeeeeeeeEEEee-ecceEEEEeeehHhHhhcccceEEeCCCCccccccccccccccccccccccCCCCeEEEEecC
Q 029802 67 ARPKLVSLGTCIGKFT-HGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMS 145 (187)
Q Consensus 67 ~r~~L~S~Gtc~GkFt-Ks~kFrl~itaL~~La~~a~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~n 145 (187)
+|..++.=|..++-|. ..|.|.+++.|...|.++.+++|+|+. |+-+.+|+.-||...++++..++-|+| .+
T Consensus 194 p~~~v~vdg~~l~~~~~~dg~~~ptl~Ga~~l~~~~~~~V~Vd~-----~v~~G~v~~pGv~~~~~~i~~gd~V~V--~~ 266 (306)
T 2q07_A 194 PELELLEGKKRLARVDRIYGMLDIYEKIAAYLLEKNIYTVEIGD-----FEVKGTIFAGGVLRADEKIRPNDVVVF--HN 266 (306)
T ss_dssp TSCEEEETTEEEEEEETTTTEEEECHHHHHHHHHTTCSEEEECS-----SCCCSEEEGGGEEEECTTCCTTCEEEE--EC
T ss_pred ceEEEEECCEEEEEEEccCCeEEEcHHHHHHhhhCCCCEEEEcc-----cccCCceeCCeeEeCCCCcCCCCEEEE--EC
Confidence 3445566689999774 578999999999999988789999996 654449999999999999999999999 77
Q ss_pred CCceeEEeeeechhhhhccCCCeeEEE
Q 029802 146 DVPLGFGVAAKSMQDCRKLDPNGIVVL 172 (187)
Q Consensus 146 d~pLGfGv~akst~~~~~~dp~~ivv~ 172 (187)
+.++|.|++.-|+.++...+. |++|.
T Consensus 267 g~~vavG~a~ms~~em~~~~k-G~aV~ 292 (306)
T 2q07_A 267 SRIFGVGLAAMSGKEMAGSEK-GIAIN 292 (306)
T ss_dssp SSCEEEEEESSCHHHHSCC---CEEEE
T ss_pred CEEEEEEEEeeCHHHHhhcCC-ceEEE
Confidence 999999999999999998775 45543
No 6
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=97.98 E-value=1.9e-05 Score=64.47 Aligned_cols=128 Identities=17% Similarity=0.233 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCceEEEe--eC--ceEEEEcHHHHHhhccCCCCCeeeeeeeE
Q 029802 3 PLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRL--HK--NRVYYVSESLVKRATNIARPKLVSLGTCI 78 (187)
Q Consensus 3 ~LteeE~~~vf~KL~kyiG~nl~~li~~~~~~~~~~~d~~y~frl--~k--~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~ 78 (187)
+|+..|.+.+.++|....|. .++... +..-..+. +. -.+|++... ++.
T Consensus 17 ~lk~sd~k~Lr~~l~~qfg~---~l~p~k--------~~v~~~k~~t~~~~~~iy~~dg~------------pl~----- 68 (187)
T 2cx0_A 17 ALSKKERRSLLERLKPYYTR---IPFSEK--------ADLRLVKARTDSGEYEIITVDGV------------PCL----- 68 (187)
T ss_dssp ECCHHHHHHHHHHHTTTSSS---CCSCTT--------SCEEEEEEECSSCEEEEEEETTE------------EEE-----
T ss_pred cCCHHHHHHHHHHHHHHcCc---cccCCC--------CcEEEEEecCCCccEEEEEECCE------------EEE-----
Confidence 68999999999999987772 222221 33334444 22 234432221 111
Q ss_pred EEee-ecceEEEEeeehHhHhhcc--cceEEeCCCCccccccccccccccccccccccCCCCeEEEEec-CCCceeEEee
Q 029802 79 GKFT-HGGKFHLTIQALSLVAANA--RHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSM-SDVPLGFGVA 154 (187)
Q Consensus 79 GkFt-Ks~kFrl~itaL~~La~~a--~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~-nd~pLGfGv~ 154 (187)
|. +.+.|.+++.++.-+ |+. +.+|+|.+.+...-+.|.+++-.||..+..++..++-|.|++. ++.++|.|.+
T Consensus 69 --f~~~dg~l~PTl~~l~~~-p~~~l~g~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~~~~g~~iA~G~~ 145 (187)
T 2cx0_A 69 --FEWSDGRIYPTLQCLKAF-GVDWLKGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVA 145 (187)
T ss_dssp --EECTTSCEEECHHHHHHH-CSTTSSEEEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEE
T ss_pred --EEeCCCeEEEEHHHHHhC-CcccCCcEEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEECCCCeEEEEEEE
Confidence 43 268999999999664 555 5599999888877779999999999999999999999999999 7999999999
Q ss_pred eechhhh
Q 029802 155 AKSMQDC 161 (187)
Q Consensus 155 akst~~~ 161 (187)
..|+.|+
T Consensus 146 ~~ss~ei 152 (187)
T 2cx0_A 146 EVDSSAL 152 (187)
T ss_dssp SSCHHHH
T ss_pred ecCHHHH
Confidence 9999998
No 7
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=97.85 E-value=4.8e-05 Score=62.39 Aligned_cols=142 Identities=19% Similarity=0.212 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHhhhhccc---ccccccCCCCCCCCCCCCceEEEeeCc-eEEEEcHHHHHhhccCCCCCeeeeeeeE
Q 029802 3 PLDEAETTAVFEKLFKFTGNN---LKNIVENPSHEGPDPNPGRYCFRLHKN-RVYYVSESLVKRATNIARPKLVSLGTCI 78 (187)
Q Consensus 3 ~LteeE~~~vf~KL~kyiG~n---l~~li~~~~~~~~~~~d~~y~frl~k~-rVyyvs~~l~~~a~~i~r~~L~S~Gtc~ 78 (187)
+|+..+.+.+..+|..-.|.. +..|+... +..-..+.+.. .||.+.... + |
T Consensus 16 ~lk~Sd~kkLr~~l~~qf~~~~~~~d~l~pkk--------~~v~~~k~~~~~~iy~~~~~p------------l-----~ 70 (188)
T 3r90_A 16 QLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKK--------DPVKIVRCHEHIEILTVNGEL------------L-----F 70 (188)
T ss_dssp ECCHHHHHHHHHHHHHHCGGGGGGHHHHSCTT--------SCEEEEEEGGGEEEEEETTEE------------E-----E
T ss_pred eccHHHHHHHHHHHHHHcCCchhhHHhhCCCC--------CCEEEEEeCCeEEEEEECCEE------------E-----E
Confidence 367788899999998766643 34444422 33333444433 344433211 1 1
Q ss_pred EEeee-cceEEEEeeehHhHhhcccceEEeCCCCcccccccccccccccccccc---ccCCCCeEEEEec-CCCceeEEe
Q 029802 79 GKFTH-GGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNHVLKGGLGRITD---SIAPGDGVVVYSM-SDVPLGFGV 153 (187)
Q Consensus 79 GkFtK-s~kFrl~itaL~~La~~a~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite---~~~~~~gVvV~n~-nd~pLGfGv 153 (187)
|.. .|.+-+++-+|.-. |+...+|+|++.+..--++|.|++--||....+ ++..++-|+|++. ++.|++.|+
T Consensus 71 --f~~~dg~l~PTl~~l~~~-p~~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~ 147 (188)
T 3r90_A 71 --FRQREGPFYPTLRLLHKY-PFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGV 147 (188)
T ss_dssp --EEETTCCCEECHHHHHHS-GGGSCEEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEE
T ss_pred --EEeCCCeEechHHHHhhC-cccCCEEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEE
Confidence 332 35788888666544 566779999999999999999999999999886 8999999999998 899999999
Q ss_pred eeechhhhhccCCCeeEEEe
Q 029802 154 AAKSMQDCRKLDPNGIVVLH 173 (187)
Q Consensus 154 ~akst~~~~~~dp~~ivv~~ 173 (187)
+.-|+.|+...+ .|++|..
T Consensus 148 a~mss~e~~~~~-kG~aV~v 166 (188)
T 3r90_A 148 MKMSAEDIEKVN-KGIGIEN 166 (188)
T ss_dssp ESSCHHHHHHHC-CSEEEEE
T ss_pred EEeCHHHHhhcC-CcEEEEE
Confidence 999999998774 4666543
No 8
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0001 Score=61.56 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=70.0
Q ss_pred ceEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhhhhccCCCeeEEEe---ccccee
Q 029802 103 HKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLH---QSDIGE 179 (187)
Q Consensus 103 ~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~~~~~dp~~ivv~~---qaD~Ge 179 (187)
-+|.|++.+....++|.+++-.+|.++..++..++-|.|++.++.+||.|++..|++|++..+ .|++|.. ..|.|-
T Consensus 76 g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS~Ei~~~~-kG~aVkv~rVimd~~~ 154 (195)
T 3zv0_C 76 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCD-HGVVASVKRCIMERDL 154 (195)
T ss_dssp EEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCS-SSEEEEEEEECBCTTS
T ss_pred CeEEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEEEEcCCHHHHhhcC-CcEEEEEEEEEeCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999988 4666654 456666
Q ss_pred eec
Q 029802 180 YLR 182 (187)
Q Consensus 180 YLR 182 (187)
|=|
T Consensus 155 Yp~ 157 (195)
T 3zv0_C 155 YPR 157 (195)
T ss_dssp SCC
T ss_pred cCc
Confidence 643
No 9
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=97.48 E-value=0.00024 Score=66.95 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=81.4
Q ss_pred eeeEEEee-ecceEEEEeeehHhHh---hcccceEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCcee
Q 029802 75 GTCIGKFT-HGGKFHLTIQALSLVA---ANARHKVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLG 150 (187)
Q Consensus 75 Gtc~GkFt-Ks~kFrl~itaL~~La---~~a~~Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLG 150 (187)
|..++-.. ..|.|.+++.++..+- +..+.+|+|...|...-+.|.+++-.||..+..++..++-|.|++.++.++|
T Consensus 476 g~~l~~~~~~dg~~~ptl~g~~~~~~~~~~~~g~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~~ia 555 (582)
T 1iq8_A 476 GKRLATVRADDGLLTLGIEGAKRLHRVLPYPRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLA 555 (582)
T ss_dssp SSEEEEECTTTSCEEECHHHHHHHHHHSCTTTTEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEE
T ss_pred CEEEEEEECCCCcEEecHHHHHHHHhhccCCCCEEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCCEEE
Confidence 44555332 3689999999987553 3346799999999888889999999999999999999999999999999999
Q ss_pred EEeeeechhhhhccCCCeeEEE
Q 029802 151 FGVAAKSMQDCRKLDPNGIVVL 172 (187)
Q Consensus 151 fGv~akst~~~~~~dp~~ivv~ 172 (187)
.|++.-|+.|+++.+. |++|.
T Consensus 556 ~G~a~~ss~ei~~~~k-G~aV~ 576 (582)
T 1iq8_A 556 TGQALLSGREMIVFQY-GRAVK 576 (582)
T ss_dssp EEEESSCHHHHHHCCS-SEEEE
T ss_pred EEEEeeCHHHHHhcCC-ceEEE
Confidence 9999999999998764 55554
No 10
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.78 E-value=0.0057 Score=55.84 Aligned_cols=103 Identities=13% Similarity=0.229 Sum_probs=75.8
Q ss_pred eEEEeeCceEEEEcHHHHHhhccCCCCCeeeeeeeEEEeeecceEEEEeeehHhHhhcc-cceEEeCCCCcccccccccc
Q 029802 43 YCFRLHKNRVYYVSESLVKRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANA-RHKVWIKPTSEMSFLYGNHV 121 (187)
Q Consensus 43 y~frl~k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~itaL~~La~~a-~~Kvwvk~~~E~~FLYGn~V 121 (187)
..+....+++|++++.+... +..-+++..|..+|++.| +.|+.+-...-.|.+.+ +..+=+....-..||-|+.|
T Consensus 355 ~~~~~~~~~~~~~p~~~~~~---~~~lr~~r~G~~lg~~kk-~rf~Ps~~la~~l~~~~~~~~~~l~~~~~~~yL~Ge~i 430 (479)
T 2frx_A 355 LRLWQRDKELWLFPVGIEAL---IGKVRFSRLGIKLAETHN-KGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDV 430 (479)
T ss_dssp EEEEESSSEEEEEEHHHHTT---BTTBCCSEESEEEEEEET-TEEEECHHHHHHHBCSSSSSEEECCHHHHHHHHTTCCC
T ss_pred ceEEEECCEEEEeccccchh---ccCcEEEecceEEEEEec-CCceEcHHHHHhcchhhcCcEEECCHHHHHHHhcCCCC
Confidence 46666789999999987653 344578999999999987 89999987766676665 33555665445689999988
Q ss_pred ccccccccccccCCCCeEEEEecCCCceeEEeeeec
Q 029802 122 LKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKS 157 (187)
Q Consensus 122 ~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~aks 157 (187)
--.. + ...|-|+..-.+.|||||....+
T Consensus 431 ~~~~------~--~~~G~vlv~~~g~pLG~gK~~g~ 458 (479)
T 2frx_A 431 YPQA------A--PVADDVLVTFQHQPIGLAKRIGS 458 (479)
T ss_dssp CCSS------C--CSCSEEEEEETTEEEEEEECTTT
T ss_pred cCCC------C--CCCCEEEEEECCEeeEEEEeeCC
Confidence 5321 1 23677777778999999998643
No 11
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.19 E-value=0.0099 Score=54.27 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=74.5
Q ss_pred eEEEeeCceEEEEcHHHHHhhccCCCCCeeeeeeeEEEeeecceEEEEeeehHhHhhcc-cceEEeCCCCcccccccccc
Q 029802 43 YCFRLHKNRVYYVSESLVKRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANA-RHKVWIKPTSEMSFLYGNHV 121 (187)
Q Consensus 43 y~frl~k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~itaL~~La~~a-~~Kvwvk~~~E~~FLYGn~V 121 (187)
+.+..+.++||++.+.+. .+..-+++..|..+|++.| +.|+.+-...-.|++.. ++.+=+...--..||-|+.|
T Consensus 343 ~~~~~~~~~~~~~p~~~~----~~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~l~~~~~~~yl~ge~i 417 (456)
T 3m4x_A 343 GRLLVFNDHLWEVPELAP----SLDGLKVVRTGLHLGDFKK-NRFEPSYALALATKKIENIPCLPITQKEWQSYTAGETF 417 (456)
T ss_dssp SEEEEETTEEEEECTTCC----CCTTCCEEEESEEEEEEET-TEEEECHHHHHTCCCGGGSCEEEECHHHHHHHHHTCCE
T ss_pred CceEEECCEEEEeccCcc----cccCCeEEEcCceeeEEeC-CceeECHHHHHhcCccccCcEEEcCHHHHHHHhCCCCc
Confidence 457778999999998652 4567889999999999987 89999865544555543 34677766666789999987
Q ss_pred ccccccccccccCCCCeEEEEecCCCceeEEeee
Q 029802 122 LKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAA 155 (187)
Q Consensus 122 ~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~a 155 (187)
-- ++ ..|.++..-++.|||||+..
T Consensus 418 ~~------~~----~~g~~lv~~~g~~lG~~k~~ 441 (456)
T 3m4x_A 418 QR------DG----NQGWVLLVLDKIPVGFGKQV 441 (456)
T ss_dssp EC------SC----CCEEEEEEETTEEEEEEEEE
T ss_pred cc------CC----CCCEEEEEECCEeEEEEEee
Confidence 42 21 26888888899999999985
No 12
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.10 E-value=0.0043 Score=56.58 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=67.0
Q ss_pred eEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhhhhccCCCeeEEEe---cccceee
Q 029802 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLH---QSDIGEY 180 (187)
Q Consensus 104 Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~~~~~dp~~ivv~~---qaD~GeY 180 (187)
+|.|++.....+.+|+.+...++.+..++++.++.|+|++.++.+||+|.+.-+++++..++. |+||.. ..|.|-|
T Consensus 268 ~V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVvt~kGelLAIG~A~mss~em~~~~~-G~vvk~~rV~m~~~~y 346 (400)
T 3u28_A 268 RIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDH-GVVASVKRCIMERDLY 346 (400)
T ss_dssp EEEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCSS-SEEEEEEEECSCTTSS
T ss_pred ccccCHHHHHHHHCcCccccCccccccccCCCCCEEEEEeCCCcEEEEEEEEeCHHHHhhcCC-cEEEEEEEEeecCCCC
Confidence 899999999999999999999999998999999999999999999999999999999999876 566654 3455555
Q ss_pred e
Q 029802 181 L 181 (187)
Q Consensus 181 L 181 (187)
=
T Consensus 347 p 347 (400)
T 3u28_A 347 P 347 (400)
T ss_dssp C
T ss_pred c
Confidence 3
No 13
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=95.25 E-value=0.015 Score=53.30 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=72.3
Q ss_pred eEEEeeCceEEEEcHHHHHhhccCCCCCeeeeeeeEEEeeecceEEEEeeehHhHhhc-----ccceEEeCCCCc--ccc
Q 029802 43 YCFRLHKNRVYYVSESLVKRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAAN-----ARHKVWIKPTSE--MSF 115 (187)
Q Consensus 43 y~frl~k~rVyyvs~~l~~~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~itaL~~La~~-----a~~Kvwvk~~~E--~~F 115 (187)
+.+....++||++.+.+. .+.+-+++..|..+|++.| +.|+.+-...-.|++. +...+=+....+ ..|
T Consensus 336 ~~~~~~~~~~~~~p~~~~----~~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~~~~~l~~~~~~~~~y 410 (464)
T 3m6w_A 336 GPVLDRAGHLYLLPEGLP----TLLGLKAPAPGLYLGKVQK-GRFLPARALALAFGATLPWPEGLPRLALTPEDPRALAF 410 (464)
T ss_dssp SCEEEETTEEEECCTTCB----CCTTSCCSBSSEEEEEEET-TEEEEBHHHHHHBTTTBCCCTTSCEEEECTTSHHHHHH
T ss_pred ccEEEECCEEEEeccCcc----cccCCeEEEccceeeEEeC-CceeECHHHHHhcCcccccccccceEEecccHHHHHHH
Confidence 356678999999998654 3456789999999999987 8999986554445544 244666765553 489
Q ss_pred ccccccccccccccccccCCCCeEEEE----ecCCCceeEEeee
Q 029802 116 LYGNHVLKGGLGRITDSIAPGDGVVVY----SMSDVPLGFGVAA 155 (187)
Q Consensus 116 LYGn~V~Ks~l~rite~~~~~~gVvV~----n~nd~pLGfGv~a 155 (187)
|-|+.|-= ++ ...|.++. .-++.|||||...
T Consensus 411 l~ge~i~~------~~---~~~G~~lv~~~~~~~g~~lG~~k~~ 445 (464)
T 3m6w_A 411 ATGEGVAW------EG---EDHPLALVVLKTAAGEFPLDFGKAK 445 (464)
T ss_dssp HTTCCEEC------CS---CCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HCCCCccC------CC---CCCceEEEeeccEECCEeeEEEEcc
Confidence 99999752 21 12577777 7789999999885
No 14
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=91.21 E-value=0.26 Score=43.48 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=53.1
Q ss_pred eEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhhhhccCCC
Q 029802 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPN 167 (187)
Q Consensus 104 Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~~~~~dp~ 167 (187)
+|.|++.+...+..|+.+...++....++++..+.|.|++.++.+||.|.+..+..++...+..
T Consensus 252 ~V~L~de~a~~V~nGq~L~~~gv~~~~~~i~~gd~V~V~~~~G~fLAIGe~~~s~~e~~~~~~G 315 (334)
T 2aus_C 252 KIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKG 315 (334)
T ss_dssp EEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHCSSS
T ss_pred EEEECHHHHHHHHCCCccccCcccccccccCCCCEEEEEecCCeEEEEEEeccCchhccccCCC
Confidence 8889999999999999998777666666667777899999999999999987787777765554
No 15
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=90.66 E-value=0.29 Score=43.75 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=52.6
Q ss_pred eEEeCCCCccccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhhhhccCCC
Q 029802 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPN 167 (187)
Q Consensus 104 Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~~~~~dp~ 167 (187)
+|.|++++...+.+|+.+...++..++++++..+.|+|++.++.+||.|.+..++.++...+..
T Consensus 271 ~v~l~~~~~~~i~nG~~L~~pgi~~~~~~i~~gd~V~v~~~~G~flAIGea~~~~~ei~~~~kG 334 (357)
T 2apo_A 271 KVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKG 334 (357)
T ss_dssp EEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSSS
T ss_pred EEEECHHHHHHHhCcCccCCCcccccccccCCCCeEEEEcCCCEEEEEEEeccccccccccCCC
Confidence 8899999999999999998776666666677777799999999999999987777777665543
No 16
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=88.99 E-value=0.45 Score=41.27 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=48.1
Q ss_pred eEEeCCCCccccccccc-cccccccccccccCCCCeEEEEecCCCceeEEeeeech
Q 029802 104 KVWIKPTSEMSFLYGNH-VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSM 158 (187)
Q Consensus 104 Kvwvk~~~E~~FLYGn~-V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst 158 (187)
+|.||+.++...+-|.. |++..|.++..+....+-|.|++.++.|||.|...+.+
T Consensus 4 ~~~l~~~~~~~~~~~~pwv~~~~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s 59 (396)
T 3c0k_A 4 RLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPAS 59 (396)
T ss_dssp EEEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEECTTS
T ss_pred EEEECchHHHHHhcCCCeEEhhHhhcccCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 69999999999998888 78888888887777888899999999999999986554
No 17
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=88.09 E-value=0.32 Score=43.06 Aligned_cols=65 Identities=14% Similarity=0.320 Sum_probs=57.5
Q ss_pred cceEEeCCCCccccc-cccccccccccccccccCCCCeEEEEecCCCceeEEeeeechhhhhccCC
Q 029802 102 RHKVWIKPTSEMSFL-YGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDP 166 (187)
Q Consensus 102 ~~Kvwvk~~~E~~FL-YGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst~~~~~~dp 166 (187)
+-+|+|...+..--+ -|..++-++|..+.-++...+-|.|++.++.+||-|.+..|..|+++...
T Consensus 275 ~G~v~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~~~~g~~ia~G~~~y~s~e~~~~~g 340 (367)
T 2j5v_A 275 AGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAG 340 (367)
T ss_dssp SCEEEECHHHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEEETTCCEEEEEECSSCHHHHHHHTT
T ss_pred CCEEEECcCHHHHHHhCCCccCCcccEEEECcccCCCEEEEECCCCCEEEEEEecCCHHHHHHHhC
Confidence 348888877776666 58899999999999999999999999999999999999999999987544
No 18
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=67.40 E-value=4.6 Score=35.60 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=39.3
Q ss_pred ceEEeCCCCccccccccc-cccccccccccccCCCCeEEEEecCCCceeEEeeeech
Q 029802 103 HKVWIKPTSEMSFLYGNH-VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSM 158 (187)
Q Consensus 103 ~Kvwvk~~~E~~FLYGn~-V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst 158 (187)
.+|.|||++|..+.=|.. |++..|.++.+. .+-|.|++.++.+||.|......
T Consensus 6 ~~~~l~~~~~~~~~~g~pwi~~~~i~~~~~~---G~~v~v~~~~g~~lg~g~~~~~s 59 (393)
T 4dmg_A 6 LRLVVKAGKERKLRNFYPNLYRDEIAAPPEG---VGVAEAVDAEGHFLAVGYYDPRS 59 (393)
T ss_dssp CEEEECTTCCHHHHTTCCEECGGGEEECCSS---SEEEEEECTTCCEEEEEEECTTS
T ss_pred cEEEECcchHHHHhcCCCEEEHHHhcCcCCC---CCEEEEEcCCCCEEEEEEECCCC
Confidence 479999999987766654 445556666533 66788999999999999985433
No 19
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=57.63 E-value=6.8 Score=33.69 Aligned_cols=50 Identities=28% Similarity=0.421 Sum_probs=36.4
Q ss_pred eEEeCCCCccc------cccccccccccccccccccCCCCeEEEEecCCCceeEEeeeech
Q 029802 104 KVWIKPTSEMS------FLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSM 158 (187)
Q Consensus 104 Kvwvk~~~E~~------FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst 158 (187)
+|+|++.++.. ++|.|.+ .....+.+..+-|.|++.++.+||.|...+.+
T Consensus 3 ~v~l~~~~~~~l~~g~pw~yrn~i-----~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s 58 (396)
T 2as0_A 3 RVVVDAQAARAIGKGAMIVFKKGV-----VRVEGDIKPGDIVEVYTRGGKFLGKGFANPNS 58 (396)
T ss_dssp EEEECHHHHHHHHTTCCEEEGGGE-----EEEESCCCTTCEEEEEETTCCEEEEEEECTTS
T ss_pred eEEECHhHHHHHHcCCcEEEHHHc-----cccCCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 58888877764 4565555 33434445677899999999999999997665
No 20
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=50.45 E-value=4.6 Score=25.68 Aligned_cols=12 Identities=50% Similarity=0.911 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHH
Q 029802 2 RPLDEAETTAVF 13 (187)
Q Consensus 2 R~LteeE~~~vf 13 (187)
||||+||+..++
T Consensus 21 rpltDEeLD~mL 32 (39)
T 3lqv_P 21 RPLSDEELDAMF 32 (39)
T ss_dssp CCCCHHHHHHTC
T ss_pred CCCCHHHHHHhC
Confidence 899999998875
No 21
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.82 E-value=6.3 Score=25.93 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHH
Q 029802 2 RPLDEAETTAVFE 14 (187)
Q Consensus 2 R~LteeE~~~vf~ 14 (187)
||||+||+..++=
T Consensus 20 rpltDEeLD~~LP 32 (47)
T 2fho_A 20 RPLSDEELDAMFP 32 (47)
T ss_dssp CCSCTTHHHHHSC
T ss_pred CCCCHHHHHHhCC
Confidence 8999999999875
No 22
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=38.38 E-value=23 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhcccc
Q 029802 1 MRPLDEAETTAVFEKLFKFTGNNL 24 (187)
Q Consensus 1 MR~LteeE~~~vf~KL~kyiG~nl 24 (187)
|-+.|+||.+++.+.|++|. +|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf 30 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDF 30 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccH
Confidence 46789999999999999997 453
No 23
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.60 E-value=24 Score=23.15 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhccc
Q 029802 1 MRPLDEAETTAVFEKLFKFTGNN 23 (187)
Q Consensus 1 MR~LteeE~~~vf~KL~kyiG~n 23 (187)
|.|.|+||.+++.+++.+|. ++
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~ 33 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KN 33 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TC
T ss_pred CCCCCHHHHHHHHHHHHHhC-CC
Confidence 46889999999999999994 56
No 24
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=29.35 E-value=28 Score=24.28 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHhhhhccc
Q 029802 2 RPLDEAETTAVFEKLFKFTGNN 23 (187)
Q Consensus 2 R~LteeE~~~vf~KL~kyiG~n 23 (187)
-|.++.|++.+.+|+|.|+-+|
T Consensus 10 ~pP~d~~~~~iIdktA~fVakn 31 (78)
T 1x4o_A 10 SPPEDEEAKNLAEKLARFIADG 31 (78)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHS
T ss_pred cCcCCHHHHHHHHHHHHHHHHc
Confidence 4778899999999999999877
No 25
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.84 E-value=44 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHhhhhccc
Q 029802 2 RPLDEAETTAVFEKLFKFTGNN 23 (187)
Q Consensus 2 R~LteeE~~~vf~KL~kyiG~n 23 (187)
-+.|+||.+.+.+.|++|. +|
T Consensus 10 ~~WT~eE~~~Fe~~l~~yG-Kd 30 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYG-KN 30 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTC-SC
T ss_pred CCcCHHHHHHHHHHHHHhC-cc
Confidence 3689999999999999997 45
No 26
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=24.08 E-value=23 Score=31.27 Aligned_cols=44 Identities=27% Similarity=0.210 Sum_probs=34.3
Q ss_pred eEEeCCCCccccccccccccccccccccccCCCCeEEEE-ecCCCceeEEee
Q 029802 104 KVWIKPTSEMSFLYGNHVLKGGLGRITDSIAPGDGVVVY-SMSDVPLGFGVA 154 (187)
Q Consensus 104 Kvwvk~~~E~~FLYGn~V~Ks~l~rite~~~~~~gVvV~-n~nd~pLGfGv~ 154 (187)
+|.|+++....+.+|+.+.-.. .+..+.|.|+ +.++.+||+|..
T Consensus 266 ~v~l~~~~~~~l~~G~~l~~~~-------~~~~~~v~v~~~~~g~~lai~~~ 310 (327)
T 1k8w_A 266 VVNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKFIGMGEI 310 (327)
T ss_dssp EEEECHHHHHHHTTTCCBCCSS-------CCSSSEEEEEETTTTEEEEEEEE
T ss_pred EEEeCHHHHHHHhCcCccCCCC-------CCCCCeEEEEECCCCEEEEEEEE
Confidence 7889999999999999875432 2234468888 788999999976
No 27
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=24.06 E-value=47 Score=25.26 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029802 2 RPLDEAETTAVFEKLFKF 19 (187)
Q Consensus 2 R~LteeE~~~vf~KL~ky 19 (187)
|.||+||++.|-..|..=
T Consensus 39 r~Ltdeev~~Va~~L~~~ 56 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEKR 56 (112)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHc
Confidence 789999999999988743
No 28
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=22.72 E-value=48 Score=28.58 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=33.9
Q ss_pred eEEeCCCCcc------ccccccccccccccccccccCCCCeEEEEecCCCceeEEeeeech
Q 029802 104 KVWIKPTSEM------SFLYGNHVLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSM 158 (187)
Q Consensus 104 Kvwvk~~~E~------~FLYGn~V~Ks~l~rite~~~~~~gVvV~n~nd~pLGfGv~akst 158 (187)
+|.|||.+|. ++.|.|.+-. +. +..+-|-|++.++.+||.|...+.+
T Consensus 3 ~~~l~~~~~~~~~~~~pw~y~n~~~~-----~~---~~g~~v~v~~~~g~~l~~g~~~~~s 55 (385)
T 2b78_A 3 KLMVGSFAEKKLKRGVQLLSSRDYPN-----LN---LDNQVVQLYSDADIFLGTAYLSKQN 55 (385)
T ss_dssp EEECCHHHHHHHHHTCCEEEGGGSTT-----CC---CCSEEEEEECTTCCEEEEEEEEEET
T ss_pred eEEECchHHHHHhcCCCeEEHHHhCC-----CC---CCCCEEEEEcCCCCEEEEEEECCCC
Confidence 5777776554 5677777733 22 4566788999888999999997665
No 29
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=22.62 E-value=51 Score=24.66 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029802 2 RPLDEAETTAVFEKLFKF 19 (187)
Q Consensus 2 R~LteeE~~~vf~KL~ky 19 (187)
|.||++|++.|-..|..=
T Consensus 37 r~Ltdeev~~Va~~L~~~ 54 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMRL 54 (103)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHc
Confidence 789999999999998743
No 30
>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*
Probab=20.88 E-value=48 Score=24.44 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=16.5
Q ss_pred eEEEEeeehHhHhhcccc--eEEeCCC
Q 029802 86 KFHLTIQALSLVAANARH--KVWIKPT 110 (187)
Q Consensus 86 kFrl~itaL~~La~~a~~--Kvwvk~~ 110 (187)
.+||+|+|.+- .| +||++|-
T Consensus 60 nY~Ltlea~d~-----~yeA~V~ekpw 81 (97)
T 2o9u_X 60 EYQLYVYASDK-----LFRADISEDYK 81 (97)
T ss_dssp EEEEEEEETTE-----EC-CEEEEETT
T ss_pred EEEEEEEEeCC-----ceEEEEEEecC
Confidence 79999999885 45 8999973
No 31
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=20.70 E-value=34 Score=27.24 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCceEEEe-eCceEEEEcHHHHH
Q 029802 3 PLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRL-HKNRVYYVSESLVK 61 (187)
Q Consensus 3 ~LteeE~~~vf~KL~kyiG~nl~~li~~~~~~~~~~~d~~y~frl-~k~rVyyvs~~l~~ 61 (187)
.||..|++++-.||.||+.+-+..-.+-+. .+.+..-+.|= ++ +|=||.-++++.++
T Consensus 44 ~LtQqEIRtlE~KLvkyfSkqL~~K~kv~~-~~r~~~l~~yP-~l~~WLrvVgl~~esiq 101 (149)
T 2lpe_A 44 DLTQQEIRTLEAKLVKYICKQQQSKLSVTP-SDRTAELNSYP-RFSDWLYIFNVRPEVVQ 101 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTGGGTSCT-TTSCTTGGGCS-CSTTTHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cccchhhhcCc-hHHHHHHHhccCHHHHH
Confidence 478999999999999999977633222111 01011112231 22 57788888888886
Done!