BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029803
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 269 bits (688), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 124/182 (68%), Positives = 155/182 (85%), Gaps = 1/182 (0%)
Query: 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 65
+ GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIGLP I+
Sbjct: 57 LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR 116
Query: 66 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 125
KAGV+HKINFIES+A+ LD LL+ E+EGS+D+ FVDADK NY YHERLMKL+KVGGI
Sbjct: 117 KAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGI 176
Query: 126 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
YDNTLWGGTVA PE +VPD F +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR
Sbjct: 177 VAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235
Query: 186 IF 187
++
Sbjct: 236 LY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 234 bits (596), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 142/179 (79%)
Query: 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKA
Sbjct: 68 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 127
Query: 68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
GVDHKI+F E AL VLD+++K +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+
Sbjct: 128 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 187
Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
YDNTLW G+V P + + R +L+LN++LA DPR+++ + +GDGITICRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
QL+A L RL+ AKK +++G FTGYS L AL +P DG++ +V+ + E+G P+ ++
Sbjct: 57 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
A +HKI+ AL LD+LL E G+FD A VDADK+N Y+ER ++LL+ GGI
Sbjct: 117 AEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGIL 175
Query: 127 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
LW G V P + + + + +LN + D RV +S + LGDG+T+ +I
Sbjct: 176 AVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
Q + +L+ L AK+ +EIGVF GYS L AL +P DGQI A D + I +K
Sbjct: 60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
AGV KI+ AL+ L+QL + + FD F+DADK NY Y+E + LL+ GG+
Sbjct: 120 AGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM 178
Query: 127 VYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
V DN LW G V P+E + Q + NR LA D RV++S + LGDG+T+
Sbjct: 179 VIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPLGDGMTLA 229
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 13/183 (7%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
Q M ML+RL AKK +E+G FTGYS L +L +P+DGQ+ D+N + P ++
Sbjct: 48 QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHERLMKLLKVG 123
A +HKI AL L LL NEG FD+ F+DADK NY NY+E +KL+
Sbjct: 108 AKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYELALKLVTPK 163
Query: 124 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
G+ DN W G V P + G +R+ I LN+ + +D RV +S +A+ DG+ +
Sbjct: 164 GLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIADGMFLV 217
Query: 184 RRI 186
+ I
Sbjct: 218 QPI 220
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 7/179 (3%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
QL+A+L++L AKK I+IG FTGYS + L +P+DG + DV+ ++ + +K
Sbjct: 52 QAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEK 111
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
AG+ KI S A L +L+ ++ +D ++DADK N Y+E +KLL+ GG+
Sbjct: 112 AGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLI 170
Query: 127 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
DN L G VA E Q ++ Q I N+ + D RV + +GDG+T+ R+
Sbjct: 171 AVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
GQ + +L ++ AK+ IEIG FTGYS L A +PEDG+I DV+ E + K+
Sbjct: 48 EGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107
Query: 67 AGVDHKINFIESEALSVLDQLL----------KYSENEGSFDYAFVDADKDNYCNYHERL 116
G+++KI AL L L+ ++ S D F+DADK+NY NY+ +
Sbjct: 108 NGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLI 167
Query: 117 MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 176
+KLLK GG+ + DN LW G+VA Q P S I N + +D V +S V +
Sbjct: 168 LKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVDVSLVPI 221
Query: 177 GDGITICRR 185
DG+++ R+
Sbjct: 222 ADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
GQ +A+L+RL AK+ +EIG GYS + A +P DGQ+ ++ + ++ ++
Sbjct: 51 QGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQL 110
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
AGVD ++ E AL L+ L + +FD F+DADK N +Y ++ + G +
Sbjct: 111 AGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPGTLI 166
Query: 127 VYDNTLWGGTVAVPE 141
+ DN + G V P+
Sbjct: 167 IGDNVVRDGEVVNPQ 181
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
G+ + +L+++ A+ +EIG GYS + A + G++ ++ + + +I I++
Sbjct: 46 QGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLMKLLKVGG 124
A ++ ++ AL L Q+ ENE FD+ F+DADK N Y E +KL + G
Sbjct: 106 ANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGT 161
Query: 125 IAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 169
+ + DN V E +V D+ R Q I +A +PRV
Sbjct: 162 VIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 73
LL+ + +EIG GYS + A +PE I +I+ + YE +K G++ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 74 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 133
+ +AL + ++L Y FD F+DA K Y + + ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 134 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 183
G VA E +H R +D N+ L + P+ +GDGI I
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 69
L+ L+R N K +EIG GYS A +I +D +T I+ N + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 70 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129
++++ IE AL + + N+ +D F+DA K + E LLK G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 130 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
N L+ G V+ + R ++ + D N L P + + + DG+ I
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++
Sbjct: 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
Query: 67 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGG 124
AG+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G
Sbjct: 106 AGLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGT 164
Query: 125 IAVYDNTLWGGTVAVPEEQVPD---HFRGSS 152
+ + DN + GT PD + RGSS
Sbjct: 165 VLLADNVIVPGT--------PDFLAYVRGSS 187
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 47 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 106
Query: 68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 125
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 126 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 152
+ DN + GT PD + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 49 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 108
Query: 68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 125
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 109 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 167
Query: 126 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 152
+ DN + GT PD + RGSS
Sbjct: 168 LLADNVIVPGT--------PDFLAYVRGSS 189
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83
+E+G + GYS + A + ++ I++N + I ++ AGV K+ + + +
Sbjct: 62 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 121
Query: 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPE 141
+ QL K + + + D F+D KD Y L + LL+ G + + DN + G
Sbjct: 122 IPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA----- 175
Query: 142 EQVPD---HFRGSS 152
PD H RGSS
Sbjct: 176 ---PDFLAHVRGSS 186
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83
+E+G + GYS + A + ++ I++N + I ++ AGV K+ + + +
Sbjct: 65 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 124
Query: 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPE 141
+ QL K + + + D F+D KD Y L + LL+ G + + DN + G
Sbjct: 125 IPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA----- 178
Query: 142 EQVPD---HFRGSS 152
PD H RGSS
Sbjct: 179 ---PDFLAHVRGSS 189
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83
+E+G + GYS + A + ++ I++N + I ++ AG+ K+ + + +
Sbjct: 62 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDI 121
Query: 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPE 141
+ QL K + + + D F+D KD Y L + LL+ G + + DN + G
Sbjct: 122 IPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA----- 175
Query: 142 EQVPD---HFRGSS 152
PD H RGSS
Sbjct: 176 ---PDFLAHVRGSS 186
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 69
+M LL L K +EIG GY +TA + EDG + +I+ E E ++K G
Sbjct: 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY 127
Query: 70 DHKINFI 76
D+ I +
Sbjct: 128 DNVIVIV 134
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 9 QLMAMLLRLVNAKK---TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 65
LMA+ + V K +EIG TGY+ + + + E G + +++ +R+ EI ++
Sbjct: 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Query: 66 KAGVDHKI 73
+ G+++ I
Sbjct: 122 RLGIENVI 129
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81
K +E G G ++ A P D +IT+ID++ E+ E +K G+ + + F+++
Sbjct: 40 KVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIF 97
Query: 82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE---RLMKLLKVGG 124
S+ + + SFD+ FV ++ + E L K+LK GG
Sbjct: 98 SLPFE-------DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGG 136
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
G+L+ +L R+ + + G G + A I ++ ID +R+ E +
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDN 104
Query: 68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
G+ ++ + L + + + D F D D N + ER + L + +
Sbjct: 105 GLIDRVELQVGDPLGI-------AAGQRDIDILFXDCDVFNGADVLERXNRCLAKNALLI 157
Query: 128 YDNTLWGGTVAVPEE 142
N L G+VA E
Sbjct: 158 AVNALRRGSVAESHE 172
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 153 RQAILDLNRSLADDPRVQLSHV 174
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 44 DGQITAIDVNRETYEIGLPII-----KKAGVDH 71
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 44 DGQITAIDVNRETYEIGLPII-----KKAGVDH 71
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 44 DGQITAIDVNRETYEIGLPII-----KKAGVDH 71
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 44 DGQITAIDVNRETYEIGLPII-----KKAGVDH 71
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 44 DGQITAIDVNRETYEIGLPII-----KKAGVDH 71
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 44 DGQITAIDVNRETYEIGLPII-----KKAGVDH 71
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 114 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ--VPDHFRGSSRQAILDLNRSLADDPRV 169
E+ ++ K+ ++D L GG+ +P+ Q + D+F G DLN+S+ D V
Sbjct: 342 EKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGR------DLNKSINPDEAV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,523,747
Number of Sequences: 62578
Number of extensions: 232241
Number of successful extensions: 653
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 34
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)