Query 029803
Match_columns 187
No_of_seqs 172 out of 1943
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 1.9E-40 4.2E-45 245.1 19.7 179 1-186 27-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 4.1E-38 8.9E-43 238.3 21.8 185 1-186 61-246 (247)
3 PLN02476 O-methyltransferase 100.0 2.3E-37 4.9E-42 236.9 22.4 179 1-186 100-278 (278)
4 PLN02781 Probable caffeoyl-CoA 100.0 4.1E-37 9E-42 232.8 22.3 185 1-187 50-234 (234)
5 COG4122 Predicted O-methyltran 100.0 9.6E-37 2.1E-41 225.3 19.5 174 5-187 45-219 (219)
6 KOG1663 O-methyltransferase [S 100.0 1.4E-34 3E-39 211.6 19.1 183 1-186 55-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 4.3E-19 9.3E-24 119.6 9.6 104 19-130 1-111 (112)
8 COG2242 CobL Precorrin-6B meth 99.8 1.4E-17 3E-22 119.5 15.4 117 6-132 21-137 (187)
9 PRK04457 spermidine synthase; 99.8 4.4E-17 9.4E-22 125.5 17.7 117 6-129 53-176 (262)
10 TIGR02469 CbiT precorrin-6Y C5 99.7 5.4E-17 1.2E-21 111.0 12.5 114 8-129 8-121 (124)
11 PRK08287 cobalt-precorrin-6Y C 99.7 1.4E-16 2.9E-21 117.1 15.4 112 9-131 21-132 (187)
12 PRK00377 cbiT cobalt-precorrin 99.7 7.8E-17 1.7E-21 119.4 14.0 110 16-131 37-146 (198)
13 COG2226 UbiE Methylase involve 99.7 7.8E-17 1.7E-21 121.2 13.5 116 9-133 41-159 (238)
14 PLN03075 nicotianamine synthas 99.7 5.4E-17 1.2E-21 125.5 12.2 118 5-130 110-233 (296)
15 PRK13944 protein-L-isoaspartat 99.7 6.4E-17 1.4E-21 120.5 11.8 107 13-129 66-172 (205)
16 TIGR00138 gidB 16S rRNA methyl 99.7 8.5E-17 1.8E-21 117.4 11.2 103 16-129 39-141 (181)
17 PRK00107 gidB 16S rRNA methylt 99.7 1.6E-16 3.6E-21 116.3 12.7 102 17-129 43-144 (187)
18 PF01209 Ubie_methyltran: ubiE 99.7 3.6E-17 7.7E-22 123.7 9.4 116 10-133 38-156 (233)
19 PRK13942 protein-L-isoaspartat 99.7 9.6E-17 2.1E-21 120.1 11.6 115 4-129 61-175 (212)
20 TIGR00080 pimt protein-L-isoas 99.7 1.6E-16 3.5E-21 119.2 11.7 113 6-129 64-176 (215)
21 COG2230 Cfa Cyclopropane fatty 99.7 3.9E-16 8.5E-21 119.5 13.2 114 10-135 63-181 (283)
22 PF13847 Methyltransf_31: Meth 99.7 1.8E-16 3.8E-21 112.7 10.2 108 18-132 2-112 (152)
23 PRK14901 16S rRNA methyltransf 99.7 8.9E-16 1.9E-20 126.2 15.7 162 5-187 238-432 (434)
24 PRK07402 precorrin-6B methylas 99.7 8.8E-16 1.9E-20 113.6 14.1 119 4-131 25-143 (196)
25 COG2518 Pcm Protein-L-isoaspar 99.7 1.6E-16 3.5E-21 116.3 10.0 112 4-129 57-168 (209)
26 TIGR03533 L3_gln_methyl protei 99.7 2.6E-15 5.6E-20 117.0 16.1 117 4-129 102-250 (284)
27 PF05175 MTS: Methyltransferas 99.7 2.1E-15 4.6E-20 109.1 14.6 110 9-128 21-138 (170)
28 PRK11036 putative S-adenosyl-L 99.7 1E-15 2.3E-20 117.6 13.1 103 18-129 43-148 (255)
29 PRK14903 16S rRNA methyltransf 99.7 6.6E-15 1.4E-19 120.7 17.8 123 4-133 222-369 (431)
30 PRK14902 16S rRNA methyltransf 99.7 2.8E-15 6.1E-20 123.6 15.8 122 4-132 235-381 (444)
31 TIGR02752 MenG_heptapren 2-hep 99.7 1.3E-15 2.8E-20 115.4 12.3 110 14-131 40-152 (231)
32 PF02353 CMAS: Mycolic acid cy 99.7 1.1E-15 2.5E-20 118.0 11.6 117 7-135 47-171 (273)
33 PRK00121 trmB tRNA (guanine-N( 99.7 1.2E-15 2.7E-20 113.3 11.3 113 9-129 32-155 (202)
34 COG2519 GCD14 tRNA(1-methylade 99.7 1.4E-15 2.9E-20 113.9 11.2 114 8-131 83-196 (256)
35 PF01135 PCMT: Protein-L-isoas 99.7 5.3E-16 1.2E-20 115.3 8.8 112 6-129 60-171 (209)
36 TIGR00091 tRNA (guanine-N(7)-) 99.7 1E-14 2.2E-19 107.7 15.6 106 18-129 15-131 (194)
37 TIGR00446 nop2p NOL1/NOP2/sun 99.7 2.3E-14 5.1E-19 110.6 17.9 118 8-133 60-202 (264)
38 PRK00811 spermidine synthase; 99.6 1.3E-14 2.7E-19 113.1 16.4 106 17-129 74-190 (283)
39 PLN02233 ubiquinone biosynthes 99.6 2.6E-15 5.6E-20 115.7 12.4 112 15-133 69-185 (261)
40 PRK11805 N5-glutamine S-adenos 99.6 1.6E-14 3.4E-19 113.7 16.2 117 4-129 114-262 (307)
41 PRK10901 16S rRNA methyltransf 99.6 1.2E-14 2.7E-19 119.2 16.2 121 4-132 229-374 (427)
42 PRK14904 16S rRNA methyltransf 99.6 8.3E-15 1.8E-19 120.8 15.1 119 6-133 237-380 (445)
43 TIGR00563 rsmB ribosomal RNA s 99.6 1.3E-14 2.9E-19 119.1 15.7 123 5-133 224-371 (426)
44 PF13578 Methyltransf_24: Meth 99.6 4.5E-16 9.8E-21 104.0 5.8 102 24-131 1-106 (106)
45 COG4123 Predicted O-methyltran 99.6 4.3E-15 9.4E-20 111.9 11.5 115 8-128 33-168 (248)
46 PF13659 Methyltransf_26: Meth 99.6 5.7E-15 1.2E-19 100.2 11.0 102 20-128 1-113 (117)
47 PRK01581 speE spermidine synth 99.6 3.6E-14 7.8E-19 112.3 16.9 107 16-129 147-267 (374)
48 PF08704 GCD14: tRNA methyltra 99.6 3.7E-15 8E-20 113.0 10.6 117 6-129 27-145 (247)
49 PRK15128 23S rRNA m(5)C1962 me 99.6 4.8E-14 1E-18 114.2 17.5 109 17-130 218-339 (396)
50 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.3E-14 2.8E-19 111.0 13.1 106 18-132 55-166 (247)
51 TIGR00740 methyltransferase, p 99.6 2.8E-14 6E-19 108.7 14.6 107 18-133 52-164 (239)
52 PLN02366 spermidine synthase 99.6 5.8E-14 1.3E-18 110.1 16.5 107 17-129 89-205 (308)
53 COG2227 UbiG 2-polyprenyl-3-me 99.6 7E-15 1.5E-19 109.3 10.6 104 18-133 58-164 (243)
54 PLN02244 tocopherol O-methyltr 99.6 1.1E-14 2.3E-19 116.3 12.4 106 18-132 117-225 (340)
55 PRK00312 pcm protein-L-isoaspa 99.6 9.4E-15 2E-19 109.4 11.1 112 4-129 63-174 (212)
56 smart00828 PKS_MT Methyltransf 99.6 2E-14 4.2E-19 108.4 12.9 103 21-132 1-106 (224)
57 PLN02396 hexaprenyldihydroxybe 99.6 1.4E-14 3E-19 114.3 11.9 104 19-132 131-237 (322)
58 COG1092 Predicted SAM-dependen 99.6 5.6E-14 1.2E-18 112.7 15.1 115 13-132 211-338 (393)
59 PRK11207 tellurite resistance 99.6 1.2E-14 2.6E-19 107.6 10.3 102 15-128 26-132 (197)
60 PRK00517 prmA ribosomal protei 99.6 2.2E-13 4.8E-18 104.4 17.4 110 6-132 105-215 (250)
61 TIGR00406 prmA ribosomal prote 99.6 6.2E-14 1.3E-18 109.5 14.5 116 6-132 145-261 (288)
62 PRK11873 arsM arsenite S-adeno 99.6 1.9E-14 4E-19 111.7 11.1 112 15-134 73-187 (272)
63 TIGR00477 tehB tellurite resis 99.6 2.5E-14 5.5E-19 105.7 10.8 104 13-129 24-132 (195)
64 TIGR00417 speE spermidine synt 99.6 2.3E-13 5.1E-18 105.4 16.1 106 17-129 70-185 (270)
65 PF07279 DUF1442: Protein of u 99.6 3.3E-13 7.1E-18 98.8 15.7 157 3-185 25-186 (218)
66 TIGR00536 hemK_fam HemK family 99.6 6.2E-14 1.3E-18 109.4 12.4 117 5-130 96-244 (284)
67 TIGR00537 hemK_rel_arch HemK-r 99.6 2E-13 4.2E-18 99.6 14.2 109 8-130 8-140 (179)
68 PRK13943 protein-L-isoaspartat 99.6 9.9E-14 2.1E-18 109.4 12.9 104 15-129 76-179 (322)
69 PRK10909 rsmD 16S rRNA m(2)G96 99.6 3.9E-13 8.5E-18 99.3 15.1 113 8-129 42-158 (199)
70 PRK15001 SAM-dependent 23S rib 99.5 5.8E-14 1.3E-18 112.7 11.6 101 20-129 229-339 (378)
71 PRK01683 trans-aconitate 2-met 99.5 3.7E-14 8E-19 109.2 10.1 98 17-129 29-129 (258)
72 PRK11783 rlmL 23S rRNA m(2)G24 99.5 9.9E-14 2.2E-18 120.0 13.6 110 14-131 533-657 (702)
73 PRK14103 trans-aconitate 2-met 99.5 3.3E-14 7.2E-19 109.3 9.4 96 17-129 27-125 (255)
74 PRK04266 fibrillarin; Provisio 99.5 7E-14 1.5E-18 105.3 10.9 107 15-129 68-175 (226)
75 TIGR02716 C20_methyl_CrtF C-20 99.5 9.4E-14 2E-18 109.5 12.1 114 11-135 141-259 (306)
76 COG2264 PrmA Ribosomal protein 99.5 3.5E-13 7.5E-18 104.2 14.7 116 7-132 149-265 (300)
77 PF13649 Methyltransf_25: Meth 99.5 3E-14 6.4E-19 94.4 7.6 93 23-124 1-101 (101)
78 PF08241 Methyltransf_11: Meth 99.5 1.4E-14 3E-19 94.2 5.6 92 24-128 1-95 (95)
79 PF06325 PrmA: Ribosomal prote 99.5 2.4E-13 5.3E-18 105.7 13.0 115 5-132 146-261 (295)
80 COG4106 Tam Trans-aconitate me 99.5 4E-14 8.6E-19 103.3 8.0 98 17-129 28-128 (257)
81 PLN02823 spermine synthase 99.5 6.3E-13 1.4E-17 105.4 15.5 106 17-129 101-219 (336)
82 PRK01544 bifunctional N5-gluta 99.5 9.4E-14 2E-18 116.0 11.3 101 20-129 139-268 (506)
83 TIGR03534 RF_mod_PrmC protein- 99.5 2.5E-13 5.4E-18 103.9 12.8 114 6-129 72-216 (251)
84 PRK12335 tellurite resistance 99.5 1.4E-13 3.1E-18 107.5 11.1 100 16-128 117-221 (287)
85 PF03602 Cons_hypoth95: Conser 99.5 6.2E-13 1.4E-17 97.1 13.6 120 6-130 28-153 (183)
86 PTZ00098 phosphoethanolamine N 99.5 1E-13 2.2E-18 107.0 9.9 113 8-133 42-159 (263)
87 PRK08317 hypothetical protein; 99.5 6.6E-13 1.4E-17 100.5 14.1 115 11-134 11-128 (241)
88 PF10672 Methyltrans_SAM: S-ad 99.5 4.8E-13 1E-17 103.5 13.3 109 15-129 119-237 (286)
89 PRK14121 tRNA (guanine-N(7)-)- 99.5 5.4E-13 1.2E-17 106.9 13.5 103 19-128 122-233 (390)
90 PRK14968 putative methyltransf 99.5 5E-13 1.1E-17 97.9 12.3 110 9-129 13-147 (188)
91 TIGR00095 RNA methyltransferas 99.5 1.9E-12 4.2E-17 95.1 15.2 113 12-129 42-158 (189)
92 PF05401 NodS: Nodulation prot 99.5 4.3E-14 9.3E-19 102.4 6.0 143 18-186 42-195 (201)
93 PRK00216 ubiE ubiquinone/menaq 99.5 4.8E-13 1.1E-17 101.4 12.0 109 17-132 49-160 (239)
94 PRK15068 tRNA mo(5)U34 methylt 99.5 5.9E-13 1.3E-17 105.4 12.7 107 18-134 121-230 (322)
95 PRK06922 hypothetical protein; 99.5 6.3E-13 1.4E-17 111.9 13.3 114 12-133 411-540 (677)
96 PF08242 Methyltransf_12: Meth 99.5 9.1E-15 2E-19 96.4 1.8 96 24-126 1-99 (99)
97 TIGR03704 PrmC_rel_meth putati 99.5 9E-13 1.9E-17 101.0 13.0 114 6-129 69-215 (251)
98 PRK14966 unknown domain/N5-glu 99.5 6.6E-13 1.4E-17 107.1 12.4 117 4-129 235-380 (423)
99 TIGR01177 conserved hypothetic 99.5 5.1E-13 1.1E-17 106.3 11.6 115 4-129 167-293 (329)
100 PLN02336 phosphoethanolamine N 99.5 3.6E-13 7.9E-18 112.1 11.0 113 9-133 257-372 (475)
101 PRK14967 putative methyltransf 99.5 1.1E-12 2.4E-17 98.9 12.5 100 17-128 34-157 (223)
102 COG0421 SpeE Spermidine syntha 99.5 3.3E-12 7.1E-17 98.8 15.1 106 17-129 74-189 (282)
103 PRK09489 rsmC 16S ribosomal RN 99.5 5.7E-13 1.2E-17 106.2 11.3 109 7-128 185-301 (342)
104 PRK09328 N5-glutamine S-adenos 99.5 5.4E-13 1.2E-17 103.5 10.9 114 6-129 92-237 (275)
105 COG2890 HemK Methylase of poly 99.5 4.9E-12 1.1E-16 98.3 16.0 116 5-131 94-239 (280)
106 PRK10258 biotin biosynthesis p 99.5 4.5E-13 9.8E-18 102.7 9.3 97 18-130 41-140 (251)
107 TIGR03587 Pse_Me-ase pseudamin 99.5 1.4E-12 3E-17 97.0 11.5 103 14-133 38-145 (204)
108 PRK03522 rumB 23S rRNA methylu 99.4 4.7E-12 1E-16 100.2 14.9 102 18-129 172-273 (315)
109 TIGR02072 BioC biotin biosynth 99.4 1.2E-12 2.6E-17 99.2 11.2 101 18-131 33-136 (240)
110 COG2813 RsmC 16S RNA G1207 met 99.4 1.4E-12 3E-17 100.5 11.4 110 7-128 147-264 (300)
111 PF03848 TehB: Tellurite resis 99.4 6.8E-13 1.5E-17 96.9 9.3 112 5-130 17-133 (192)
112 TIGR00452 methyltransferase, p 99.4 1.2E-12 2.6E-17 103.0 10.9 109 17-135 119-230 (314)
113 PRK03612 spermidine synthase; 99.4 1.7E-12 3.6E-17 109.0 12.2 107 17-130 295-415 (521)
114 PRK11705 cyclopropane fatty ac 99.4 2.4E-12 5.2E-17 104.2 12.5 102 16-133 164-270 (383)
115 KOG1270 Methyltransferases [Co 99.4 2.2E-13 4.9E-18 102.2 6.0 100 21-133 91-198 (282)
116 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.7E-12 5.8E-17 96.4 11.9 106 17-132 37-145 (223)
117 PLN02490 MPBQ/MSBQ methyltrans 99.4 2E-12 4.3E-17 102.5 11.1 99 19-129 113-214 (340)
118 PF01564 Spermine_synth: Sperm 99.4 1.6E-11 3.5E-16 93.8 15.6 107 17-130 74-191 (246)
119 PRK11933 yebU rRNA (cytosine-C 99.4 7.8E-12 1.7E-16 103.1 14.8 121 6-133 98-245 (470)
120 PRK05134 bifunctional 3-demeth 99.4 6.1E-12 1.3E-16 95.4 13.1 113 8-131 37-152 (233)
121 KOG1540 Ubiquinone biosynthesi 99.4 5E-12 1.1E-16 94.6 11.7 105 18-129 99-213 (296)
122 PTZ00146 fibrillarin; Provisio 99.4 3.6E-12 7.8E-17 98.5 11.3 106 17-129 130-236 (293)
123 PF02390 Methyltransf_4: Putat 99.4 1.5E-11 3.3E-16 90.7 14.2 125 22-172 20-156 (195)
124 TIGR02021 BchM-ChlM magnesium 99.4 7.7E-12 1.7E-16 94.0 12.8 100 17-129 53-157 (219)
125 PRK11088 rrmA 23S rRNA methylt 99.4 2.7E-12 5.9E-17 99.6 10.5 94 19-129 85-180 (272)
126 PF13489 Methyltransf_23: Meth 99.4 3.8E-12 8.3E-17 90.7 9.8 107 6-133 8-118 (161)
127 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.4E-11 3E-16 101.8 14.4 104 18-129 296-399 (443)
128 PRK11188 rrmJ 23S rRNA methylt 99.4 2.3E-11 4.9E-16 90.9 14.0 100 17-129 49-164 (209)
129 COG0742 N6-adenine-specific me 99.4 2.4E-11 5.2E-16 87.9 13.4 117 7-129 30-153 (187)
130 TIGR03438 probable methyltrans 99.4 1.5E-11 3.2E-16 96.8 13.2 110 19-130 63-177 (301)
131 TIGR02085 meth_trns_rumB 23S r 99.4 3.1E-11 6.8E-16 97.6 15.0 101 18-129 232-333 (374)
132 TIGR03840 TMPT_Se_Te thiopurin 99.4 4.5E-12 9.8E-17 94.8 9.1 105 18-131 33-153 (213)
133 PLN02336 phosphoethanolamine N 99.4 1.2E-11 2.6E-16 103.1 12.4 106 17-133 35-145 (475)
134 TIGR00479 rumA 23S rRNA (uraci 99.4 3.7E-11 8.1E-16 99.0 15.0 104 18-129 291-395 (431)
135 KOG2904 Predicted methyltransf 99.3 1.1E-11 2.5E-16 93.5 10.1 121 4-131 127-286 (328)
136 TIGR01983 UbiG ubiquinone bios 99.3 4.4E-11 9.6E-16 90.1 13.5 103 19-131 45-150 (224)
137 PRK07580 Mg-protoporphyrin IX 99.3 3.9E-11 8.6E-16 90.6 13.1 98 18-128 62-164 (230)
138 KOG4300 Predicted methyltransf 99.3 8.6E-12 1.9E-16 90.6 8.9 100 19-129 76-181 (252)
139 PF06080 DUF938: Protein of un 99.3 1E-11 2.2E-16 91.0 8.6 153 3-169 7-168 (204)
140 PRK13255 thiopurine S-methyltr 99.3 1.6E-11 3.4E-16 92.2 9.8 102 18-128 36-153 (218)
141 COG0220 Predicted S-adenosylme 99.3 6.7E-11 1.5E-15 88.9 13.1 102 21-128 50-162 (227)
142 PF02475 Met_10: Met-10+ like- 99.3 1.4E-11 3E-16 90.9 8.9 102 17-128 99-200 (200)
143 smart00650 rADc Ribosomal RNA 99.3 3.1E-11 6.7E-16 87.2 10.2 108 16-136 10-119 (169)
144 TIGR00438 rrmJ cell division p 99.3 5E-11 1.1E-15 87.6 11.2 106 11-129 24-145 (188)
145 PRK04338 N(2),N(2)-dimethylgua 99.3 1.4E-10 2.9E-15 93.8 14.1 100 20-129 58-157 (382)
146 PF04989 CmcI: Cephalosporin h 99.3 2.9E-11 6.4E-16 88.8 9.3 163 4-172 17-186 (206)
147 COG0144 Sun tRNA and rRNA cyto 99.3 2.2E-10 4.8E-15 91.9 15.0 126 3-133 140-291 (355)
148 PRK00536 speE spermidine synth 99.3 1.1E-10 2.4E-15 89.3 12.6 99 17-130 70-171 (262)
149 cd02440 AdoMet_MTases S-adenos 99.3 1.2E-10 2.6E-15 76.0 10.9 99 22-129 1-103 (107)
150 PRK06202 hypothetical protein; 99.3 2.8E-11 6E-16 91.8 8.4 112 9-133 50-169 (232)
151 smart00138 MeTrc Methyltransfe 99.3 2.2E-11 4.9E-16 94.0 7.8 104 19-129 99-241 (264)
152 COG4976 Predicted methyltransf 99.2 1.2E-11 2.6E-16 91.2 5.7 144 20-186 126-286 (287)
153 KOG2915 tRNA(1-methyladenosine 99.2 5.3E-11 1.2E-15 89.8 9.2 113 9-128 95-208 (314)
154 PRK05785 hypothetical protein; 99.2 7.8E-11 1.7E-15 89.0 10.1 97 10-124 41-141 (226)
155 PRK05031 tRNA (uracil-5-)-meth 99.2 4.5E-10 9.8E-15 90.5 15.0 121 2-129 186-319 (362)
156 PF08003 Methyltransf_9: Prote 99.2 1.4E-10 3E-15 89.5 11.0 110 17-136 113-225 (315)
157 COG2521 Predicted archaeal met 99.2 1.2E-10 2.6E-15 86.2 10.1 104 17-128 132-243 (287)
158 KOG1271 Methyltransferases [Ge 99.2 2E-10 4.3E-15 82.0 10.8 106 20-133 68-184 (227)
159 TIGR00308 TRM1 tRNA(guanine-26 99.2 4E-10 8.6E-15 90.8 13.8 101 21-129 46-146 (374)
160 PLN02672 methionine S-methyltr 99.2 2.5E-10 5.4E-15 101.7 13.5 120 5-131 100-279 (1082)
161 PF10294 Methyltransf_16: Puta 99.2 2.1E-10 4.6E-15 83.2 10.8 108 16-129 42-155 (173)
162 PTZ00338 dimethyladenosine tra 99.2 1E-09 2.2E-14 85.9 14.3 91 4-106 21-111 (294)
163 TIGR02143 trmA_only tRNA (urac 99.2 1.4E-09 3.1E-14 87.3 15.4 121 2-129 177-310 (353)
164 PF09445 Methyltransf_15: RNA 99.2 8.6E-11 1.9E-15 83.6 7.2 77 21-104 1-77 (163)
165 COG2265 TrmA SAM-dependent met 99.2 8E-10 1.7E-14 90.5 13.5 119 2-129 272-395 (432)
166 KOG1661 Protein-L-isoaspartate 99.2 2.1E-10 4.4E-15 83.7 8.7 113 7-129 69-192 (237)
167 COG2520 Predicted methyltransf 99.2 4.6E-10 9.9E-15 88.6 11.2 112 12-133 181-292 (341)
168 PF01170 UPF0020: Putative RNA 99.2 5.3E-10 1.2E-14 81.5 10.5 120 2-129 11-150 (179)
169 PRK11727 23S rRNA mA1618 methy 99.1 2.7E-09 5.8E-14 84.2 15.0 82 19-104 114-197 (321)
170 PLN02585 magnesium protoporphy 99.1 1.3E-09 2.8E-14 86.0 13.0 96 19-128 144-248 (315)
171 KOG2899 Predicted methyltransf 99.1 3.2E-10 7E-15 84.3 9.0 110 17-133 56-212 (288)
172 COG2263 Predicted RNA methylas 99.1 8.3E-09 1.8E-13 74.4 15.4 90 17-120 43-137 (198)
173 PF05891 Methyltransf_PK: AdoM 99.1 1.8E-10 3.9E-15 85.0 6.8 115 19-143 55-176 (218)
174 PF05724 TPMT: Thiopurine S-me 99.1 3.1E-10 6.8E-15 85.1 8.3 115 4-128 23-153 (218)
175 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.1 6.9E-09 1.5E-13 80.9 16.0 123 5-133 71-222 (283)
176 PHA03412 putative methyltransf 99.1 2E-09 4.4E-14 80.8 12.4 99 18-130 48-163 (241)
177 PHA03411 putative methyltransf 99.1 8.2E-10 1.8E-14 84.7 9.7 96 18-128 63-181 (279)
178 PF02527 GidB: rRNA small subu 99.1 1.4E-09 2.9E-14 79.4 10.4 96 22-128 51-146 (184)
179 COG1041 Predicted DNA modifica 99.1 6E-10 1.3E-14 87.6 8.7 117 2-129 180-309 (347)
180 KOG2361 Predicted methyltransf 99.1 1.7E-10 3.7E-15 85.8 5.0 107 20-133 72-186 (264)
181 PRK13256 thiopurine S-methyltr 99.1 2.2E-09 4.7E-14 80.6 10.7 109 19-134 43-167 (226)
182 PF00891 Methyltransf_2: O-met 99.1 3.4E-10 7.4E-15 86.3 6.6 104 13-135 94-204 (241)
183 COG3963 Phospholipid N-methylt 99.1 3.4E-09 7.3E-14 74.8 10.7 119 2-128 31-154 (194)
184 PF07021 MetW: Methionine bios 99.0 1.5E-09 3.2E-14 78.8 8.7 99 17-131 11-112 (193)
185 COG0357 GidB Predicted S-adeno 99.0 3.2E-09 7E-14 78.9 10.6 98 20-128 68-166 (215)
186 PRK14896 ksgA 16S ribosomal RN 99.0 5.9E-09 1.3E-13 80.3 12.6 88 3-105 13-100 (258)
187 PF12147 Methyltransf_20: Puta 99.0 6.5E-09 1.4E-13 79.7 12.2 121 9-135 125-254 (311)
188 KOG3010 Methyltransferase [Gen 99.0 2.8E-10 6.1E-15 84.6 4.5 110 9-128 22-135 (261)
189 PRK00274 ksgA 16S ribosomal RN 99.0 1.2E-08 2.7E-13 79.2 13.1 101 4-118 27-127 (272)
190 PRK01544 bifunctional N5-gluta 99.0 2.5E-08 5.5E-13 83.6 15.1 103 19-128 347-460 (506)
191 KOG3191 Predicted N6-DNA-methy 99.0 7.3E-08 1.6E-12 69.0 15.0 101 19-129 43-167 (209)
192 PRK00050 16S rRNA m(4)C1402 me 99.0 5.1E-09 1.1E-13 81.6 9.6 91 9-106 10-100 (296)
193 PF05185 PRMT5: PRMT5 arginine 98.9 7.7E-09 1.7E-13 85.2 10.5 101 20-128 187-295 (448)
194 KOG2730 Methylase [General fun 98.9 4.6E-09 9.9E-14 77.2 7.8 83 17-105 92-174 (263)
195 TIGR02081 metW methionine bios 98.9 5.1E-09 1.1E-13 77.3 7.9 90 18-122 12-104 (194)
196 KOG1499 Protein arginine N-met 98.9 5.9E-09 1.3E-13 81.7 7.8 103 17-129 58-166 (346)
197 TIGR00755 ksgA dimethyladenosi 98.9 3.2E-08 7E-13 76.0 11.2 99 5-118 15-116 (253)
198 PF03059 NAS: Nicotianamine sy 98.9 1.1E-08 2.4E-13 78.7 8.4 104 19-129 120-229 (276)
199 COG0030 KsgA Dimethyladenosine 98.8 1.4E-07 3.1E-12 72.0 13.5 103 13-128 24-129 (259)
200 PRK04148 hypothetical protein; 98.8 4.2E-08 9.1E-13 67.6 9.0 100 7-123 4-104 (134)
201 KOG0820 Ribosomal RNA adenine 98.8 3E-08 6.4E-13 75.2 8.9 90 5-106 44-133 (315)
202 PF04816 DUF633: Family of unk 98.8 5.7E-08 1.2E-12 72.1 10.2 99 23-129 1-100 (205)
203 PF05711 TylF: Macrocin-O-meth 98.8 4E-08 8.8E-13 74.7 9.3 137 17-178 72-240 (248)
204 COG4262 Predicted spermidine s 98.8 1.4E-07 3E-12 74.4 12.0 106 18-130 288-407 (508)
205 PF06962 rRNA_methylase: Putat 98.8 2E-08 4.3E-13 69.5 6.5 111 46-174 1-123 (140)
206 PF03291 Pox_MCEL: mRNA cappin 98.8 2.8E-08 6.1E-13 78.9 8.3 107 19-129 62-185 (331)
207 PF05958 tRNA_U5-meth_tr: tRNA 98.8 4.2E-08 9.2E-13 78.8 9.2 111 2-116 176-299 (352)
208 KOG2187 tRNA uracil-5-methyltr 98.7 1.1E-07 2.3E-12 78.0 9.2 121 2-128 362-488 (534)
209 KOG1541 Predicted protein carb 98.7 4.1E-08 8.9E-13 72.4 5.9 95 20-129 51-159 (270)
210 KOG3420 Predicted RNA methylas 98.7 5.6E-08 1.2E-12 67.1 6.1 93 18-121 47-144 (185)
211 PRK10742 putative methyltransf 98.7 2.6E-07 5.6E-12 70.0 9.8 87 9-104 76-172 (250)
212 PLN02232 ubiquinone biosynthes 98.6 7.6E-08 1.6E-12 68.9 6.2 78 48-132 1-83 (160)
213 TIGR00478 tly hemolysin TlyA f 98.6 8.1E-08 1.8E-12 72.4 6.2 93 18-128 74-169 (228)
214 PF05219 DREV: DREV methyltran 98.6 2E-06 4.3E-11 65.3 13.5 133 19-173 94-237 (265)
215 KOG1500 Protein arginine N-met 98.6 3.3E-07 7.1E-12 71.7 8.1 100 18-128 176-280 (517)
216 KOG1975 mRNA cap methyltransfe 98.6 6.4E-07 1.4E-11 69.7 9.3 108 17-128 115-235 (389)
217 PF02384 N6_Mtase: N-6 DNA Met 98.5 3.5E-07 7.6E-12 72.3 8.0 121 3-128 30-181 (311)
218 KOG1562 Spermidine synthase [A 98.5 1.3E-06 2.9E-11 67.1 10.6 149 16-184 118-281 (337)
219 PF01739 CheR: CheR methyltran 98.5 7.7E-07 1.7E-11 65.7 8.5 104 19-129 31-174 (196)
220 COG0116 Predicted N6-adenine-s 98.5 3.5E-06 7.5E-11 67.5 12.2 120 3-129 175-343 (381)
221 PF02005 TRM: N2,N2-dimethylgu 98.5 1.1E-06 2.5E-11 71.0 9.3 106 19-131 49-155 (377)
222 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.5E-06 3.2E-11 75.9 10.6 98 3-105 173-312 (702)
223 TIGR02987 met_A_Alw26 type II 98.5 3.2E-06 6.9E-11 71.6 12.3 98 4-104 9-120 (524)
224 COG2384 Predicted SAM-dependen 98.5 5.7E-06 1.2E-10 61.3 12.0 103 19-129 16-119 (226)
225 KOG1709 Guanidinoacetate methy 98.4 5.9E-06 1.3E-10 60.9 11.4 107 18-133 100-209 (271)
226 PF08123 DOT1: Histone methyla 98.4 5.1E-06 1.1E-10 61.8 11.4 118 8-133 32-161 (205)
227 COG0293 FtsJ 23S rRNA methylas 98.4 6.6E-06 1.4E-10 60.7 11.6 101 17-130 43-159 (205)
228 PF01728 FtsJ: FtsJ-like methy 98.4 9.5E-07 2.1E-11 64.4 6.9 110 6-129 5-138 (181)
229 TIGR00006 S-adenosyl-methyltra 98.4 4.7E-06 1E-10 65.3 11.1 92 9-106 11-102 (305)
230 PF01269 Fibrillarin: Fibrilla 98.4 2.6E-06 5.6E-11 63.3 8.9 105 17-128 71-176 (229)
231 TIGR01444 fkbM_fam methyltrans 98.4 1.2E-06 2.7E-11 61.2 6.9 58 22-81 1-58 (143)
232 PF13679 Methyltransf_32: Meth 98.4 1.7E-05 3.8E-10 55.5 12.4 75 8-82 10-93 (141)
233 KOG1122 tRNA and rRNA cytosine 98.4 2.3E-06 5.1E-11 68.7 8.5 111 16-132 238-373 (460)
234 COG1352 CheR Methylase of chem 98.3 3E-06 6.5E-11 65.3 7.4 104 19-129 96-240 (268)
235 KOG3178 Hydroxyindole-O-methyl 98.3 9.5E-06 2.1E-10 64.0 9.9 97 20-134 178-279 (342)
236 PF00398 RrnaAD: Ribosomal RNA 98.3 4.3E-06 9.3E-11 64.6 7.9 119 4-132 15-136 (262)
237 PRK10611 chemotaxis methyltran 98.2 1.4E-06 2.9E-11 68.0 4.5 105 19-129 115-261 (287)
238 COG4076 Predicted RNA methylas 98.2 3.1E-06 6.7E-11 61.1 5.8 99 20-131 33-136 (252)
239 PF09243 Rsm22: Mitochondrial 98.2 1.6E-05 3.6E-10 61.8 9.6 112 9-129 20-139 (274)
240 COG3510 CmcI Cephalosporin hyd 98.2 7.4E-05 1.6E-09 54.2 11.7 124 7-137 57-187 (237)
241 TIGR03439 methyl_EasF probable 98.1 7.7E-05 1.7E-09 59.1 12.7 110 18-128 75-195 (319)
242 COG1867 TRM1 N2,N2-dimethylgua 98.1 4.4E-05 9.5E-10 60.7 10.8 103 20-131 53-155 (380)
243 PF05148 Methyltransf_8: Hypot 98.1 6.9E-06 1.5E-10 60.5 5.8 120 7-172 60-181 (219)
244 PF01861 DUF43: Protein of unk 98.1 0.00029 6.3E-09 53.2 13.6 98 18-124 43-142 (243)
245 COG1889 NOP1 Fibrillarin-like 98.1 5.3E-05 1.1E-09 55.5 9.3 102 17-128 74-178 (231)
246 PF05971 Methyltransf_10: Prot 98.0 2E-05 4.2E-10 61.6 6.4 80 20-104 103-185 (299)
247 COG0275 Predicted S-adenosylme 98.0 0.00012 2.6E-09 56.8 10.6 85 17-105 21-105 (314)
248 PF03141 Methyltransf_29: Puta 98.0 4.1E-06 8.8E-11 68.9 2.6 100 20-133 118-222 (506)
249 PF01795 Methyltransf_5: MraW 98.0 4.7E-05 1E-09 59.8 7.9 94 9-107 11-104 (310)
250 KOG3201 Uncharacterized conser 97.9 0.0001 2.2E-09 52.2 8.3 107 16-128 26-138 (201)
251 PRK11760 putative 23S rRNA C24 97.9 0.0001 2.2E-09 58.5 9.3 92 18-128 210-303 (357)
252 COG1189 Predicted rRNA methyla 97.9 6.7E-05 1.5E-09 56.3 7.6 99 17-128 77-176 (245)
253 KOG3115 Methyltransferase-like 97.9 9.7E-05 2.1E-09 54.2 8.0 105 19-128 60-181 (249)
254 PF04672 Methyltransf_19: S-ad 97.9 0.00019 4.1E-09 55.2 9.6 114 18-132 67-192 (267)
255 COG3897 Predicted methyltransf 97.9 4.9E-05 1.1E-09 55.4 6.0 97 17-128 77-176 (218)
256 KOG1253 tRNA methyltransferase 97.8 1.7E-05 3.7E-10 65.0 3.9 116 12-131 102-217 (525)
257 KOG2940 Predicted methyltransf 97.8 4.1E-05 8.8E-10 57.2 4.9 98 19-128 72-172 (325)
258 PF07942 N2227: N2227-like pro 97.8 0.00024 5.1E-09 54.9 8.8 118 7-132 37-204 (270)
259 KOG2352 Predicted spermine/spe 97.8 7.6E-05 1.6E-09 61.4 6.3 114 19-134 295-420 (482)
260 PHA01634 hypothetical protein 97.7 0.00013 2.7E-09 49.6 5.8 74 18-104 27-100 (156)
261 PRK01747 mnmC bifunctional tRN 97.7 0.00057 1.2E-08 59.6 11.1 104 19-128 57-204 (662)
262 PF04445 SAM_MT: Putative SAM- 97.7 6.5E-05 1.4E-09 56.7 4.5 85 11-104 65-159 (234)
263 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 5.8E-05 1.3E-09 57.9 4.2 114 19-135 56-204 (256)
264 COG0500 SmtA SAM-dependent met 97.6 0.00088 1.9E-08 46.2 9.4 103 23-133 52-158 (257)
265 KOG1269 SAM-dependent methyltr 97.6 0.00011 2.3E-09 59.2 4.9 107 16-131 107-216 (364)
266 KOG3045 Predicted RNA methylas 97.6 0.00026 5.7E-09 53.8 6.4 97 7-132 168-266 (325)
267 KOG2198 tRNA cytosine-5-methyl 97.5 0.0011 2.4E-08 52.8 9.4 117 15-133 151-299 (375)
268 PF07091 FmrO: Ribosomal RNA m 97.4 0.00052 1.1E-08 52.1 6.0 151 9-181 94-249 (251)
269 KOG0024 Sorbitol dehydrogenase 97.4 0.003 6.6E-08 49.7 10.1 106 17-130 167-273 (354)
270 KOG4589 Cell division protein 97.3 0.0033 7.2E-08 45.7 8.8 104 17-135 67-187 (232)
271 COG1064 AdhP Zn-dependent alco 97.2 0.0044 9.5E-08 49.4 10.1 98 16-132 163-261 (339)
272 COG4798 Predicted methyltransf 97.2 0.00052 1.1E-08 50.1 4.3 109 16-132 45-168 (238)
273 COG0286 HsdM Type I restrictio 97.2 0.0021 4.6E-08 54.1 8.5 130 4-135 171-334 (489)
274 PF12692 Methyltransf_17: S-ad 97.1 0.016 3.5E-07 40.5 10.8 113 9-133 16-137 (160)
275 KOG2671 Putative RNA methylase 97.1 0.00061 1.3E-08 53.9 4.0 115 5-128 194-352 (421)
276 KOG1596 Fibrillarin and relate 97.1 0.0056 1.2E-07 46.3 8.5 107 16-129 153-260 (317)
277 KOG1227 Putative methyltransfe 97.0 0.00026 5.5E-09 54.9 1.3 104 19-132 194-299 (351)
278 COG1063 Tdh Threonine dehydrog 97.0 0.006 1.3E-07 49.2 9.2 102 19-132 168-271 (350)
279 COG5459 Predicted rRNA methyla 97.0 0.00048 1.1E-08 54.6 2.7 108 17-129 111-224 (484)
280 COG4301 Uncharacterized conser 97.0 0.034 7.4E-07 42.4 12.1 119 6-128 61-191 (321)
281 PF03141 Methyltransf_29: Puta 96.9 0.003 6.4E-08 52.5 6.7 102 16-132 362-469 (506)
282 KOG1501 Arginine N-methyltrans 96.9 0.0025 5.4E-08 52.1 5.8 59 22-82 69-127 (636)
283 KOG3987 Uncharacterized conser 96.8 0.00021 4.5E-09 52.7 -0.7 95 18-132 111-209 (288)
284 KOG1099 SAM-dependent methyltr 96.7 0.0049 1.1E-07 46.3 5.6 94 19-129 41-162 (294)
285 KOG4058 Uncharacterized conser 96.7 0.011 2.4E-07 41.4 7.0 102 16-128 69-170 (199)
286 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.0073 1.6E-07 41.1 6.2 91 29-132 1-91 (130)
287 PRK11524 putative methyltransf 96.6 0.0071 1.5E-07 47.3 6.6 56 8-66 195-252 (284)
288 PF04378 RsmJ: Ribosomal RNA s 96.6 0.064 1.4E-06 41.0 11.5 116 6-131 45-166 (245)
289 KOG0822 Protein kinase inhibit 96.6 0.0054 1.2E-07 51.3 5.6 101 20-128 368-476 (649)
290 cd08283 FDH_like_1 Glutathione 96.6 0.041 8.8E-07 44.8 10.8 108 14-130 179-306 (386)
291 TIGR00027 mthyl_TIGR00027 meth 96.5 0.16 3.4E-06 39.3 12.9 111 19-132 81-199 (260)
292 PF11968 DUF3321: Putative met 96.4 0.0057 1.2E-07 45.6 4.4 80 21-125 53-139 (219)
293 COG0686 Ald Alanine dehydrogen 96.3 0.07 1.5E-06 42.1 10.2 95 19-127 167-265 (371)
294 PRK09424 pntA NAD(P) transhydr 96.3 0.08 1.7E-06 44.8 11.1 107 17-132 162-287 (509)
295 COG3129 Predicted SAM-dependen 96.2 0.0078 1.7E-07 45.3 4.3 82 20-106 79-163 (292)
296 PRK13699 putative methylase; P 96.2 0.022 4.7E-07 43.2 6.7 56 9-67 151-208 (227)
297 PRK09880 L-idonate 5-dehydroge 96.2 0.053 1.2E-06 43.4 9.4 99 18-131 168-267 (343)
298 COG2961 ComJ Protein involved 96.2 0.4 8.6E-06 36.7 14.4 134 4-166 74-213 (279)
299 KOG2793 Putative N2,N2-dimethy 96.1 0.029 6.2E-07 42.9 7.1 101 19-129 86-198 (248)
300 PRK13699 putative methylase; P 96.1 0.013 2.9E-07 44.3 5.2 51 73-128 2-70 (227)
301 PRK11524 putative methyltransf 96.1 0.018 3.9E-07 45.1 5.9 53 72-129 8-79 (284)
302 PF05430 Methyltransf_30: S-ad 96.0 0.018 4E-07 39.3 5.0 51 72-128 32-88 (124)
303 cd08254 hydroxyacyl_CoA_DH 6-h 96.0 0.1 2.2E-06 41.2 10.0 99 17-129 163-262 (338)
304 KOG2651 rRNA adenine N-6-methy 96.0 0.031 6.8E-07 45.1 6.8 53 7-61 141-193 (476)
305 PF11599 AviRa: RRNA methyltra 95.9 0.023 4.9E-07 42.4 5.3 108 19-130 51-214 (246)
306 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.26 5.7E-06 36.0 10.9 126 22-175 2-151 (185)
307 TIGR03451 mycoS_dep_FDH mycoth 95.8 0.12 2.7E-06 41.5 9.8 103 17-131 174-277 (358)
308 PF02254 TrkA_N: TrkA-N domain 95.8 0.029 6.3E-07 37.4 5.2 89 28-129 4-95 (116)
309 cd08237 ribitol-5-phosphate_DH 95.7 0.15 3.3E-06 40.8 9.9 93 18-130 162-256 (341)
310 TIGR00561 pntA NAD(P) transhyd 95.6 0.1 2.3E-06 44.1 9.1 102 18-128 162-282 (511)
311 KOG1098 Putative SAM-dependent 95.6 0.093 2E-06 45.0 8.6 100 17-133 42-160 (780)
312 cd08281 liver_ADH_like1 Zinc-d 95.6 0.17 3.8E-06 40.9 9.9 100 17-130 189-290 (371)
313 TIGR00518 alaDH alanine dehydr 95.5 0.15 3.3E-06 41.5 9.5 96 19-128 166-265 (370)
314 PF02636 Methyltransf_28: Puta 95.5 0.023 4.9E-07 43.7 4.5 47 20-66 19-72 (252)
315 PLN03154 putative allyl alcoho 95.5 0.31 6.8E-06 39.1 11.0 101 16-130 155-258 (348)
316 cd05188 MDR Medium chain reduc 95.4 0.28 6E-06 37.2 10.2 98 18-129 133-231 (271)
317 KOG2798 Putative trehalase [Ca 95.4 0.048 1E-06 43.0 5.7 116 8-131 132-297 (369)
318 cd00315 Cyt_C5_DNA_methylase C 95.3 0.035 7.5E-07 43.3 4.8 69 22-104 2-70 (275)
319 PF05050 Methyltransf_21: Meth 95.3 0.043 9.4E-07 38.7 5.0 43 25-67 1-48 (167)
320 TIGR03201 dearomat_had 6-hydro 95.2 0.48 1E-05 38.0 11.2 106 17-131 164-273 (349)
321 KOG2078 tRNA modification enzy 95.1 0.016 3.6E-07 47.2 2.6 66 17-85 247-313 (495)
322 PRK10309 galactitol-1-phosphat 95.0 0.38 8.3E-06 38.4 10.2 103 17-131 158-261 (347)
323 cd08239 THR_DH_like L-threonin 94.9 0.6 1.3E-05 37.1 11.2 101 16-130 160-262 (339)
324 COG0677 WecC UDP-N-acetyl-D-ma 94.9 0.45 9.9E-06 38.9 10.2 106 21-136 10-134 (436)
325 cd08294 leukotriene_B4_DH_like 94.9 0.61 1.3E-05 36.7 11.0 100 15-129 139-240 (329)
326 COG1565 Uncharacterized conser 94.9 0.12 2.6E-06 41.6 6.7 49 20-68 78-133 (370)
327 COG0604 Qor NADPH:quinone redu 94.8 0.48 1E-05 37.9 10.2 106 12-131 135-242 (326)
328 TIGR03366 HpnZ_proposed putati 94.8 0.89 1.9E-05 35.2 11.5 101 18-132 119-220 (280)
329 cd08285 NADP_ADH NADP(H)-depen 94.7 0.7 1.5E-05 36.9 11.0 104 16-131 163-267 (351)
330 KOG2360 Proliferation-associat 94.7 0.034 7.5E-07 44.8 3.2 89 10-104 204-292 (413)
331 COG3315 O-Methyltransferase in 94.6 0.69 1.5E-05 36.5 10.4 109 20-131 93-210 (297)
332 COG1568 Predicted methyltransf 94.5 0.39 8.5E-06 37.4 8.5 101 19-128 152-258 (354)
333 PLN02740 Alcohol dehydrogenase 94.5 0.75 1.6E-05 37.4 10.9 103 15-130 194-300 (381)
334 cd08293 PTGR2 Prostaglandin re 94.5 0.74 1.6E-05 36.6 10.7 94 21-128 156-252 (345)
335 TIGR02825 B4_12hDH leukotriene 94.5 1.1 2.4E-05 35.3 11.5 100 15-129 134-236 (325)
336 cd08295 double_bond_reductase_ 94.4 0.99 2.1E-05 35.9 11.2 101 15-129 147-250 (338)
337 TIGR02356 adenyl_thiF thiazole 94.2 1.2 2.6E-05 33.1 10.4 83 17-106 18-121 (202)
338 PLN02827 Alcohol dehydrogenase 94.2 0.85 1.8E-05 37.1 10.5 102 16-130 190-295 (378)
339 cd00401 AdoHcyase S-adenosyl-L 94.1 0.88 1.9E-05 37.6 10.4 88 18-130 200-289 (413)
340 COG1004 Ugd Predicted UDP-gluc 94.0 1.3 2.9E-05 36.2 11.0 101 22-135 2-125 (414)
341 KOG0023 Alcohol dehydrogenase, 93.9 0.57 1.2E-05 37.2 8.5 101 17-131 179-280 (360)
342 PF01262 AlaDh_PNT_C: Alanine 93.9 0.13 2.7E-06 37.0 4.6 44 17-62 17-61 (168)
343 cd05278 FDH_like Formaldehyde 93.9 0.83 1.8E-05 36.3 9.8 102 16-129 164-266 (347)
344 cd08261 Zn_ADH7 Alcohol dehydr 93.8 1.2 2.6E-05 35.3 10.6 101 15-128 155-256 (337)
345 TIGR02822 adh_fam_2 zinc-bindi 93.7 1.1 2.3E-05 35.8 10.1 93 16-131 162-255 (329)
346 cd08286 FDH_like_ADH2 formalde 93.7 1.4 3E-05 35.1 10.7 100 17-128 164-264 (345)
347 cd05213 NAD_bind_Glutamyl_tRNA 93.6 2.9 6.4E-05 33.2 13.4 97 18-132 176-274 (311)
348 KOG1331 Predicted methyltransf 93.6 0.063 1.4E-06 41.7 2.7 92 18-128 44-141 (293)
349 COG1748 LYS9 Saccharopine dehy 93.6 0.41 9E-06 39.2 7.5 73 21-106 2-78 (389)
350 cd08230 glucose_DH Glucose deh 93.5 0.63 1.4E-05 37.3 8.6 96 18-131 171-270 (355)
351 PLN02353 probable UDP-glucose 93.5 3.6 7.8E-05 34.8 13.1 103 21-135 2-132 (473)
352 PF03686 UPF0146: Uncharacteri 93.4 0.81 1.8E-05 31.3 7.5 93 10-122 4-96 (127)
353 TIGR01202 bchC 2-desacetyl-2-h 93.4 0.52 1.1E-05 37.1 7.7 88 18-130 143-231 (308)
354 PF01210 NAD_Gly3P_dh_N: NAD-d 93.3 0.86 1.9E-05 32.3 8.1 95 22-128 1-101 (157)
355 TIGR02818 adh_III_F_hyde S-(hy 93.3 2 4.4E-05 34.7 11.2 102 16-130 182-287 (368)
356 PRK05708 2-dehydropantoate 2-r 93.2 0.31 6.7E-06 38.5 6.2 94 21-128 3-102 (305)
357 PRK12475 thiamine/molybdopteri 93.2 2.1 4.5E-05 34.5 10.9 83 17-106 21-126 (338)
358 cd08238 sorbose_phosphate_red 93.1 0.81 1.8E-05 37.6 8.8 103 17-128 173-286 (410)
359 cd08300 alcohol_DH_class_III c 93.0 2.3 5E-05 34.3 11.1 103 16-131 183-289 (368)
360 PTZ00357 methyltransferase; Pr 92.9 0.5 1.1E-05 41.4 7.2 104 22-125 703-830 (1072)
361 PF10354 DUF2431: Domain of un 92.8 0.69 1.5E-05 33.3 7.0 100 26-129 3-124 (166)
362 PF01053 Cys_Met_Meta_PP: Cys/ 92.7 3.9 8.5E-05 33.6 12.0 124 3-133 53-181 (386)
363 PF06859 Bin3: Bicoid-interact 92.7 0.057 1.2E-06 35.9 1.1 38 96-133 1-47 (110)
364 PF00899 ThiF: ThiF family; I 92.6 2.3 5E-05 29.1 9.6 80 20-106 2-102 (135)
365 TIGR02819 fdhA_non_GSH formald 92.6 2.6 5.5E-05 34.6 10.9 105 16-132 182-301 (393)
366 cd00757 ThiF_MoeB_HesA_family 92.5 3.1 6.8E-05 31.4 10.6 85 17-108 18-123 (228)
367 PRK11064 wecC UDP-N-acetyl-D-m 92.5 5.5 0.00012 33.0 13.8 105 21-135 4-124 (415)
368 COG1062 AdhC Zn-dependent alco 92.5 1.8 3.9E-05 34.8 9.3 103 16-131 182-286 (366)
369 cd05285 sorbitol_DH Sorbitol d 92.4 2.4 5.2E-05 33.7 10.4 102 15-129 158-264 (343)
370 KOG0780 Signal recognition par 92.4 3.5 7.6E-05 33.9 11.0 109 19-132 100-224 (483)
371 PRK07502 cyclohexadienyl dehyd 92.4 1.1 2.4E-05 35.4 8.3 88 21-127 7-97 (307)
372 PF05206 TRM13: Methyltransfer 92.4 0.73 1.6E-05 35.6 7.0 75 7-82 3-84 (259)
373 cd08233 butanediol_DH_like (2R 92.4 2.7 6E-05 33.5 10.7 102 16-130 169-272 (351)
374 cd08278 benzyl_alcohol_DH Benz 92.3 2 4.2E-05 34.7 9.9 101 16-129 183-284 (365)
375 PF03807 F420_oxidored: NADP o 92.3 0.43 9.4E-06 30.5 5.0 85 23-127 2-91 (96)
376 PRK09422 ethanol-active dehydr 92.1 4.3 9.4E-05 32.0 11.5 100 15-128 158-259 (338)
377 PRK08114 cystathionine beta-ly 92.0 6.1 0.00013 32.6 12.6 127 3-136 60-192 (395)
378 cd08301 alcohol_DH_plants Plan 91.9 3.3 7.2E-05 33.4 10.8 104 15-131 183-290 (369)
379 COG0541 Ffh Signal recognition 91.8 5.5 0.00012 33.2 11.6 138 18-175 98-247 (451)
380 PLN02586 probable cinnamyl alc 91.8 4.5 9.7E-05 32.6 11.4 96 18-130 182-278 (360)
381 KOG2352 Predicted spermine/spe 91.7 0.88 1.9E-05 38.1 7.1 96 22-128 51-159 (482)
382 cd08291 ETR_like_1 2-enoyl thi 91.7 3.8 8.3E-05 32.3 10.7 97 19-129 142-241 (324)
383 cd08277 liver_alcohol_DH_like 91.5 3.8 8.3E-05 33.0 10.7 102 16-130 181-286 (365)
384 PF00145 DNA_methylase: C-5 cy 91.4 0.9 2E-05 35.8 6.9 94 22-132 2-112 (335)
385 PRK15182 Vi polysaccharide bio 91.4 5.1 0.00011 33.4 11.4 103 19-135 5-125 (425)
386 COG0270 Dcm Site-specific DNA 91.3 1.6 3.4E-05 35.0 8.2 99 20-132 3-118 (328)
387 PRK12439 NAD(P)H-dependent gly 91.3 1.4 3E-05 35.5 7.8 97 18-127 5-108 (341)
388 PF10237 N6-adenineMlase: Prob 91.3 4.1 8.9E-05 29.2 11.0 109 4-128 8-121 (162)
389 cd08263 Zn_ADH10 Alcohol dehyd 91.2 3.2 6.8E-05 33.4 10.0 98 18-128 186-285 (367)
390 PRK07688 thiamine/molybdopteri 91.2 5 0.00011 32.4 10.9 82 17-105 21-125 (339)
391 cd01488 Uba3_RUB Ubiquitin act 91.2 3.1 6.8E-05 32.8 9.5 87 22-115 1-107 (291)
392 PRK06249 2-dehydropantoate 2-r 91.2 0.93 2E-05 35.9 6.7 34 95-128 71-104 (313)
393 PRK15057 UDP-glucose 6-dehydro 91.1 3.8 8.3E-05 33.7 10.3 101 22-135 2-122 (388)
394 cd08296 CAD_like Cinnamyl alco 91.1 3.7 8.1E-05 32.5 10.1 98 16-129 160-258 (333)
395 PRK07417 arogenate dehydrogena 91.0 1.8 3.9E-05 33.7 8.1 85 22-126 2-87 (279)
396 PF02153 PDH: Prephenate dehyd 91.0 0.81 1.8E-05 35.3 6.1 74 35-127 3-76 (258)
397 PF11312 DUF3115: Protein of u 91.0 0.72 1.6E-05 36.5 5.7 110 21-131 88-243 (315)
398 KOG2912 Predicted DNA methylas 91.0 0.59 1.3E-05 37.2 5.2 77 24-103 107-185 (419)
399 cd08232 idonate-5-DH L-idonate 91.0 2.1 4.6E-05 33.9 8.6 94 19-128 165-260 (339)
400 PRK08293 3-hydroxybutyryl-CoA 91.0 3.3 7.2E-05 32.3 9.6 96 21-128 4-118 (287)
401 cd01484 E1-2_like Ubiquitin ac 90.8 4.6 0.0001 30.8 9.8 87 22-116 1-111 (234)
402 cd08231 MDR_TM0436_like Hypoth 90.8 4.8 0.0001 32.2 10.6 98 19-129 177-279 (361)
403 cd05286 QOR2 Quinone oxidoredu 90.8 4.4 9.6E-05 31.2 10.1 97 15-128 132-233 (320)
404 PF08351 DUF1726: Domain of un 90.7 0.8 1.7E-05 29.5 4.9 76 94-170 9-89 (92)
405 cd05279 Zn_ADH1 Liver alcohol 90.7 5 0.00011 32.3 10.7 101 16-129 180-284 (365)
406 PRK05690 molybdopterin biosynt 90.7 6.2 0.00013 30.2 10.8 83 17-106 29-132 (245)
407 PRK08762 molybdopterin biosynt 90.6 4.8 0.0001 32.9 10.5 82 18-106 133-235 (376)
408 PF02558 ApbA: Ketopantoate re 90.4 4.4 9.6E-05 28.0 9.7 96 23-128 1-99 (151)
409 TIGR00692 tdh L-threonine 3-de 90.3 7.9 0.00017 30.7 11.7 99 18-129 160-260 (340)
410 cd08236 sugar_DH NAD(P)-depend 90.3 6.1 0.00013 31.3 10.7 100 16-129 156-257 (343)
411 PLN02494 adenosylhomocysteinas 90.2 4.2 9.1E-05 34.3 9.8 96 10-129 240-340 (477)
412 TIGR00497 hsdM type I restrict 90.2 7.6 0.00016 33.1 11.6 117 5-126 201-351 (501)
413 cd08265 Zn_ADH3 Alcohol dehydr 90.2 4.5 9.7E-05 32.9 10.0 102 17-129 201-306 (384)
414 PLN02256 arogenate dehydrogena 90.2 5.6 0.00012 31.5 10.2 97 9-126 25-123 (304)
415 TIGR00853 pts-lac PTS system, 90.1 2.7 5.9E-05 27.2 7.0 71 21-123 4-74 (95)
416 KOG0821 Predicted ribosomal RN 89.9 0.84 1.8E-05 34.5 5.0 60 19-82 50-109 (326)
417 PRK07810 O-succinylhomoserine 89.8 7.4 0.00016 32.1 11.0 123 4-133 69-195 (403)
418 KOG3924 Putative protein methy 89.7 7.7 0.00017 31.9 10.6 111 16-133 189-311 (419)
419 PRK06130 3-hydroxybutyryl-CoA 89.7 5.9 0.00013 31.2 10.1 95 20-127 4-112 (311)
420 PRK12921 2-dehydropantoate 2-r 89.7 2 4.4E-05 33.6 7.4 34 95-128 67-100 (305)
421 PRK05939 hypothetical protein; 89.7 10 0.00022 31.2 12.6 123 3-132 45-170 (397)
422 PF04072 LCM: Leucine carboxyl 89.5 3.6 7.9E-05 29.8 8.1 94 9-104 67-165 (183)
423 cd08266 Zn_ADH_like1 Alcohol d 89.5 5.5 0.00012 31.1 9.8 99 17-129 164-264 (342)
424 PRK06522 2-dehydropantoate 2-r 89.5 4.5 9.7E-05 31.6 9.2 93 22-128 2-98 (304)
425 PRK03659 glutathione-regulated 89.4 1.4 3E-05 38.4 6.8 93 21-128 401-496 (601)
426 PRK05396 tdh L-threonine 3-deh 89.4 5.7 0.00012 31.5 9.9 101 18-130 162-263 (341)
427 PRK10083 putative oxidoreducta 89.3 6.7 0.00015 31.0 10.3 100 16-129 157-258 (339)
428 PRK05597 molybdopterin biosynt 89.3 8.1 0.00018 31.3 10.7 83 17-106 25-128 (355)
429 TIGR02355 moeB molybdopterin s 89.2 8.3 0.00018 29.4 10.6 91 17-114 21-132 (240)
430 PTZ00354 alcohol dehydrogenase 89.1 7.5 0.00016 30.4 10.3 100 16-129 137-239 (334)
431 cd08279 Zn_ADH_class_III Class 89.1 5.1 0.00011 32.2 9.5 101 16-128 179-280 (363)
432 PRK08644 thiamine biosynthesis 89.1 7.8 0.00017 29.0 10.7 96 17-119 25-141 (212)
433 TIGR00936 ahcY adenosylhomocys 89.1 6.5 0.00014 32.6 10.0 87 18-129 193-281 (406)
434 cd08255 2-desacetyl-2-hydroxye 89.1 5.4 0.00012 30.5 9.3 94 15-128 93-188 (277)
435 cd08244 MDR_enoyl_red Possible 89.1 9.2 0.0002 29.8 11.2 100 15-128 138-239 (324)
436 COG1893 ApbA Ketopantoate redu 89.0 1.2 2.6E-05 35.3 5.6 35 94-128 65-99 (307)
437 cd05288 PGDH Prostaglandin deh 88.9 5.6 0.00012 31.2 9.5 98 17-128 143-242 (329)
438 cd05281 TDH Threonine dehydrog 88.9 10 0.00022 30.1 11.7 98 18-129 162-261 (341)
439 cd08243 quinone_oxidoreductase 88.9 9.3 0.0002 29.6 10.8 97 16-129 139-237 (320)
440 PRK05967 cystathionine beta-ly 88.8 12 0.00026 30.9 12.3 122 4-132 63-188 (395)
441 cd08260 Zn_ADH6 Alcohol dehydr 88.8 8.6 0.00019 30.5 10.5 99 16-128 162-262 (345)
442 cd08297 CAD3 Cinnamyl alcohol 88.7 9.7 0.00021 30.1 10.8 101 16-129 162-264 (341)
443 PRK08328 hypothetical protein; 88.7 8.8 0.00019 29.1 10.6 83 17-106 24-128 (231)
444 TIGR00675 dcm DNA-methyltransf 88.6 1.5 3.3E-05 34.8 6.1 65 23-103 1-66 (315)
445 PRK08306 dipicolinate synthase 88.6 10 0.00023 29.9 11.3 87 19-127 151-238 (296)
446 PTZ00142 6-phosphogluconate de 88.6 9.4 0.0002 32.3 10.9 94 22-127 3-98 (470)
447 KOG1197 Predicted quinone oxid 88.5 7.6 0.00016 30.2 9.2 100 15-128 142-243 (336)
448 PRK08574 cystathionine gamma-s 88.5 8.1 0.00018 31.7 10.3 122 4-132 52-176 (385)
449 PF11899 DUF3419: Protein of u 88.4 1.7 3.6E-05 35.7 6.2 52 11-65 27-78 (380)
450 PRK10669 putative cation:proto 88.4 2 4.2E-05 37.0 6.9 93 21-128 418-513 (558)
451 PRK08324 short chain dehydroge 88.3 9.6 0.00021 33.8 11.3 82 19-104 421-506 (681)
452 PRK09496 trkA potassium transp 88.2 7 0.00015 32.5 10.0 96 19-127 230-328 (453)
453 cd01492 Aos1_SUMO Ubiquitin ac 88.1 8.7 0.00019 28.3 9.8 82 17-106 18-120 (197)
454 PLN02514 cinnamyl-alcohol dehy 88.1 11 0.00025 30.2 10.9 97 18-131 179-276 (357)
455 PRK09496 trkA potassium transp 88.0 6.2 0.00014 32.8 9.6 93 22-128 2-97 (453)
456 PRK05703 flhF flagellar biosyn 87.9 15 0.00032 30.7 13.5 78 20-104 221-307 (424)
457 PRK14974 cell division protein 87.8 13 0.00028 30.0 12.4 108 20-132 140-263 (336)
458 PRK07066 3-hydroxybutyryl-CoA 87.8 13 0.00027 29.8 12.3 94 20-127 7-116 (321)
459 PRK05786 fabG 3-ketoacyl-(acyl 87.8 9.4 0.0002 28.3 11.1 107 19-129 4-134 (238)
460 cd08241 QOR1 Quinone oxidoredu 87.6 11 0.00024 29.0 10.7 100 16-129 136-237 (323)
461 cd05284 arabinose_DH_like D-ar 87.5 12 0.00027 29.4 10.7 100 17-129 165-265 (340)
462 PRK09028 cystathionine beta-ly 87.5 15 0.00032 30.3 12.1 124 5-135 61-188 (394)
463 PRK08655 prephenate dehydrogen 87.4 4.9 0.00011 33.6 8.5 87 22-127 2-89 (437)
464 PRK07671 cystathionine beta-ly 87.4 13 0.00028 30.3 10.8 120 4-132 49-173 (377)
465 PF02826 2-Hacid_dh_C: D-isome 87.3 6.8 0.00015 28.3 8.4 88 18-127 34-124 (178)
466 PRK08064 cystathionine beta-ly 87.3 15 0.00032 30.1 11.5 121 4-132 53-177 (390)
467 PRK07582 cystathionine gamma-l 87.3 11 0.00023 30.7 10.3 118 4-132 50-171 (366)
468 PRK07530 3-hydroxybutyryl-CoA 87.0 13 0.00028 29.1 10.5 96 20-128 4-117 (292)
469 PF07015 VirC1: VirC1 protein; 87.0 2.7 5.8E-05 31.9 6.1 76 28-104 11-91 (231)
470 PRK05600 thiamine biosynthesis 86.9 13 0.00028 30.4 10.5 83 17-106 38-141 (370)
471 COG0373 HemA Glutamyl-tRNA red 86.9 10 0.00022 31.5 9.9 114 3-133 161-276 (414)
472 PRK08248 O-acetylhomoserine am 86.9 14 0.00031 30.8 10.9 122 4-132 63-188 (431)
473 cd08240 6_hydroxyhexanoate_dh_ 86.8 13 0.00028 29.6 10.5 95 19-129 175-273 (350)
474 COG1255 Uncharacterized protei 86.8 7.5 0.00016 26.2 8.7 97 10-127 4-101 (129)
475 cd08290 ETR 2-enoyl thioester 86.7 14 0.0003 29.2 10.8 102 16-128 143-249 (341)
476 COG0287 TyrA Prephenate dehydr 86.7 4.9 0.00011 31.5 7.7 32 95-126 63-94 (279)
477 cd08235 iditol_2_DH_like L-idi 86.7 11 0.00024 29.8 10.0 98 16-129 162-264 (343)
478 PRK03562 glutathione-regulated 86.5 2.7 5.8E-05 36.8 6.7 93 21-128 401-496 (621)
479 cd05276 p53_inducible_oxidored 86.4 11 0.00024 28.9 9.8 100 16-129 136-237 (323)
480 PRK07877 hypothetical protein; 86.4 11 0.00023 33.8 10.3 82 17-105 104-205 (722)
481 PLN02989 cinnamyl-alcohol dehy 86.4 6.8 0.00015 30.9 8.6 79 19-104 4-85 (325)
482 PF03269 DUF268: Caenorhabditi 86.3 7.8 0.00017 27.9 7.7 94 20-129 2-110 (177)
483 COG0075 Serine-pyruvate aminot 86.3 9.3 0.0002 31.4 9.2 106 20-131 56-168 (383)
484 PLN02662 cinnamyl-alcohol dehy 86.2 7.4 0.00016 30.5 8.7 79 19-104 3-84 (322)
485 cd08234 threonine_DH_like L-th 86.1 9.4 0.0002 30.0 9.3 98 15-128 155-255 (334)
486 PF07757 AdoMet_MTase: Predict 86.0 0.65 1.4E-05 30.8 2.1 33 19-54 58-90 (112)
487 cd08276 MDR7 Medium chain dehy 86.0 13 0.00028 29.1 10.0 99 16-128 157-257 (336)
488 PRK15001 SAM-dependent 23S rib 85.9 9 0.00019 31.4 9.1 105 9-129 34-141 (378)
489 PRK07411 hypothetical protein; 85.8 15 0.00033 30.2 10.4 99 17-122 35-155 (390)
490 PF12242 Eno-Rase_NADH_b: NAD( 85.8 2.5 5.5E-05 26.1 4.5 36 17-52 36-72 (78)
491 PF11899 DUF3419: Protein of u 85.6 3.4 7.3E-05 33.9 6.5 58 71-133 275-337 (380)
492 PF03446 NAD_binding_2: NAD bi 85.6 11 0.00023 26.8 10.8 117 22-179 3-123 (163)
493 PRK06035 3-hydroxyacyl-CoA deh 85.6 13 0.00028 29.1 9.7 92 21-127 4-118 (291)
494 PRK10754 quinone oxidoreductas 85.6 15 0.00033 28.7 10.2 99 17-129 138-238 (327)
495 TIGR02817 adh_fam_1 zinc-bindi 85.5 14 0.0003 29.1 9.9 95 20-128 149-245 (336)
496 PRK06176 cystathionine gamma-s 85.2 16 0.00034 29.9 10.3 121 4-132 49-173 (380)
497 PRK06940 short chain dehydroge 85.1 14 0.00029 28.5 9.5 80 21-104 3-84 (275)
498 PRK07680 late competence prote 85.1 7.2 0.00016 30.2 8.0 87 22-127 2-93 (273)
499 PRK06153 hypothetical protein; 85.1 20 0.00044 29.5 11.1 98 15-122 171-293 (393)
500 KOG2539 Mitochondrial/chloropl 85.0 0.87 1.9E-05 38.0 2.9 105 17-128 198-313 (491)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=1.9e-40 Score=245.11 Aligned_cols=179 Identities=44% Similarity=0.766 Sum_probs=160.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
|++++.++++|..+++..+|++||||||++|++++++|..+|++++|+++|.+++.++.|+++++.+++.++++++.+|+
T Consensus 27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 67899999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 160 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++.+... ...++||+||+|+++.+|..+++.+.++|+|||+|+++|++|+|.+..+.... +....+++|+
T Consensus 107 ~~~l~~l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~------~~~~~ir~f~ 179 (205)
T PF01596_consen 107 LEVLPELAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED------PKTVAIREFN 179 (205)
T ss_dssp HHHHHHHHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS------HHHHHHHHHH
T ss_pred HhhHHHHHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchh------hhHHHHHHHH
Confidence 9999887543 11358999999999999999999999999999999999999999999883321 1455699999
Q ss_pred HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803 161 RSLADDPRVQLSHVALGDGITICRRI 186 (187)
Q Consensus 161 ~~l~~~~~~~~~~lp~~~G~~~~~~~ 186 (187)
+++.++|+++++++|+++|+++++||
T Consensus 180 ~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 180 EYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=4.1e-38 Score=238.32 Aligned_cols=185 Identities=57% Similarity=0.991 Sum_probs=164.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
|++++.++++|..+++..++++|||||+++|++++++|..++++++++++|.+++.++.|+++++.+|+.++++++.|++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence 67789999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCC-cccchHHHHHHH
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAILDL 159 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 159 (187)
.+.++.+...+...++||+||+|+++..|..+++.+.++|+|||+|+++|++|+|.+.++.....+. .+. ....+++|
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~-~~~~ir~f 219 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRY-YRDFVLEL 219 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHH-HHHHHHHH
Confidence 9999887532111368999999999999999999999999999999999999999988774322111 111 23468999
Q ss_pred HHHhhcCCCeEEEeeecCCceEEEEEc
Q 029803 160 NRSLADDPRVQLSHVALGDGITICRRI 186 (187)
Q Consensus 160 ~~~l~~~~~~~~~~lp~~~G~~~~~~~ 186 (187)
++.+.++++++++++|+|+|+++++|+
T Consensus 220 n~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 220 NKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 999999999999999999999999997
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=2.3e-37 Score=236.87 Aligned_cols=179 Identities=41% Similarity=0.690 Sum_probs=163.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
|++++.++++|..+++..++++||||||++|++++++|..++++++++++|.+++.++.|+++++.+|+.++++++.+|+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 67899999999999999999999999999999999999999878999999999999999999999999998999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 160 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++.+..+ ...++||+||+|+++.+|..+++.+.++|+|||+|+++|++|+|.+.++.... . .+..+++|+
T Consensus 180 ~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d-~-----~t~~ir~fn 252 (278)
T PLN02476 180 AESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND-A-----KTISIRNFN 252 (278)
T ss_pred HHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC-H-----HHHHHHHHH
Confidence 9998876322 11368999999999999999999999999999999999999999998774322 1 456799999
Q ss_pred HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803 161 RSLADDPRVQLSHVALGDGITICRRI 186 (187)
Q Consensus 161 ~~l~~~~~~~~~~lp~~~G~~~~~~~ 186 (187)
+++.++++++++++|+|+|+++++|+
T Consensus 253 ~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 253 KKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999986
No 4
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=4.1e-37 Score=232.79 Aligned_cols=185 Identities=59% Similarity=1.031 Sum_probs=166.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
|++.+.++++|..+++..++++|||||||+|+++++++..++++++++++|.++++++.|+++++.+++.++++++.+|+
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 67899999999999999999999999999999999999998778999999999999999999999999988999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 160 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++.+... ...++||+||+|+.+..|..+++.+.++|+|||+|+++|++|+|.+.++.....++.+. ....+++|+
T Consensus 130 ~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~ 207 (234)
T PLN02781 130 LSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFN 207 (234)
T ss_pred HHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHH
Confidence 9988776321 11368999999999999999999999999999999999999999999886544444444 667899999
Q ss_pred HHhhcCCCeEEEeeecCCceEEEEEcC
Q 029803 161 RSLADDPRVQLSHVALGDGITICRRIF 187 (187)
Q Consensus 161 ~~l~~~~~~~~~~lp~~~G~~~~~~~~ 187 (187)
+.+.++|+++++++|+|+|+++++|+.
T Consensus 208 ~~i~~~~~~~~~~lp~gdG~~i~~k~~ 234 (234)
T PLN02781 208 KLLASDPRVEISQISIGDGVTLCRRLV 234 (234)
T ss_pred HHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence 999999999999999999999999874
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=9.6e-37 Score=225.30 Aligned_cols=174 Identities=41% Similarity=0.676 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSV 83 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~ 83 (187)
++++++|..+++..++++|||||++.|++++++|..++++++++++|.+++.++.|++++++.++.++++++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 8999999999999999999999999999999999999988999999999999999999999999999899999 699998
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 163 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (187)
+... ..++||+||+|+++.+|+.+++.++++|+|||+++++|++++|.+..+.. +..++ ....+++|++++
T Consensus 125 l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~ 195 (219)
T COG4122 125 LSRL-----LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYL 195 (219)
T ss_pred HHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHH
Confidence 7762 25899999999999999999999999999999999999999998887743 23333 556699999999
Q ss_pred hcCCCeEEEeeecCCceEEEEEcC
Q 029803 164 ADDPRVQLSHVALGDGITICRRIF 187 (187)
Q Consensus 164 ~~~~~~~~~~lp~~~G~~~~~~~~ 187 (187)
.++|+++++++|+|+|+++++|++
T Consensus 196 ~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 196 LEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred hhCcCceeEEEecCCceEEEeecC
Confidence 999999999999999999999975
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-34 Score=211.57 Aligned_cols=183 Identities=57% Similarity=0.967 Sum_probs=166.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
|.+.+.+++|++++++..+|+++||||+.||++++.+|..+|++++|+++|++++.++.+.+..+..+...+++++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 160 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++++.+. .+.+.||++|+|+++.+|..+++++.+++++||+|+++|++|+|.+.++....+.+.+. .+.+ -.++
T Consensus 135 ~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-~r~~-~~~n 211 (237)
T KOG1663|consen 135 LESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-IREA-LNLN 211 (237)
T ss_pred hhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-hhhh-hhhh
Confidence 9999988655 45779999999999999999999999999999999999999999777775554444443 2222 3999
Q ss_pred HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803 161 RSLADDPRVQLSHVALGDGITICRRI 186 (187)
Q Consensus 161 ~~l~~~~~~~~~~lp~~~G~~~~~~~ 186 (187)
+.|..||+++...+|+|+|+++++|+
T Consensus 212 ~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 212 KKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.80 E-value=4.3e-19 Score=119.63 Aligned_cols=104 Identities=22% Similarity=0.374 Sum_probs=86.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
|+.+|||||||+|..+.++++..+ +.+++++|++|++++.+++++...+...+++++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 578999999999999999999555 8899999999999999999997778888999999999 322221 46899
Q ss_pred EEEEeC-CCc------ccHHHHHHHHhccCCCeEEEEeC
Q 029803 99 YAFVDA-DKD------NYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 99 ~i~~d~-~~~------~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|++.. ... ....+++.+.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999987 322 23456999999999999999863
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.78 E-value=1.4e-17 Score=119.52 Aligned_cols=117 Identities=26% Similarity=0.265 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
++..+.-..++..++.+++|||||+|..++.++...| .++++++|.++++++..++|.+++++ ++++++.+++.+.++
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc
Confidence 3344444445677889999999999999999995544 89999999999999999999999995 479999999999877
Q ss_pred HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.+ .++|.||+.+. ......++.++..|+|||.||++-+.
T Consensus 99 ~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 99 DL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 53 48999999988 88999999999999999999997655
No 9
>PRK04457 spermidine synthase; Provisional
Probab=99.77 E-value=4.4e-17 Score=125.47 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
.+..++..+....++++|||||||+|.++.+++...| ..+++++|++|++++.|++++...+..++++++.+|+.++++
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 3444555555566789999999999999999998886 889999999999999999998765545689999999998876
Q ss_pred HHhhcccCCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803 86 QLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.. .++||+|++|.... ...++++.+.+.|+|||+++++
T Consensus 132 ~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 132 VH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred hC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 53 46899999996322 1368999999999999999985
No 10
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.74 E-value=5.4e-17 Score=111.05 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
...+...+...+..+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..+.. +++++.+|+....+..
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh
Confidence 33333444455678999999999999999999876 589999999999999999999887765 5889988876433322
Q ss_pred hhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 88 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||.|+++........+++.+.+.|+|||.+++.
T Consensus 86 ------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 ------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 368999999876667778999999999999999985
No 11
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.74 E-value=1.4e-16 Score=117.10 Aligned_cols=112 Identities=28% Similarity=0.304 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
.++-..+...++.+|||+|||+|..+..+++..+ +.+++++|+++++++.+++++...++. +++++.+|+... +
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~- 94 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L- 94 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c-
Confidence 3333344556788999999999999999998876 789999999999999999999888765 589999987432 1
Q ss_pred hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.++||+|++++....+..+++.+.+.|+|||+++++..
T Consensus 95 -----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 -----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred -----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 35899999987666678889999999999999998644
No 12
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.74 E-value=7.8e-17 Score=119.42 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=94.3
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..++.++...++.++|+++|+++++++.++++++.+++.++++++.+|+.+.++.. .+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~ 110 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE 110 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC
Confidence 456778999999999999999988765568999999999999999999998886667999999998765543 36
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+||.||+......+..+++.+.+.|+|||.++++..
T Consensus 111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 899999977666778899999999999999998543
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=7.8e-17 Score=121.17 Aligned_cols=116 Identities=21% Similarity=0.339 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+.+.......++.+|||+|||||..+..+++..+ .++|+++|+++.|++.+++++...+..+ ++++++|+.+. | +
T Consensus 41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f- 115 (238)
T COG2226 41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F- 115 (238)
T ss_pred HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-
Confidence 3333444444789999999999999999999988 8999999999999999999999888776 99999999774 2 2
Q ss_pred hcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 89 KYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
++++||++.+.. +..++...++++.|.|||||.+++.+...
T Consensus 116 ----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 116 ----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred ----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 478999999885 45678899999999999999998876664
No 14
>PLN03075 nicotianamine synthase; Provisional
Probab=99.73 E-value=5.4e-17 Score=125.48 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-cCCCCcEEEEEcchHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALS 82 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~ 82 (187)
+.++.+|..+... +|++|+|||||.| ++++.++....++++++++|.++++++.|+++++. .++.++++|..+|+.+
T Consensus 110 ~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 110 KLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred HHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 4556777776665 8999999999955 66666665554589999999999999999999964 8888899999999987
Q ss_pred HHHHHhhcccCCCceeEEEEeC----CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~----~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
..+. .+.||+||+++ +++.+...++++.+.|+|||++++-.
T Consensus 189 ~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4322 36899999985 35788899999999999999999854
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.73 E-value=6.4e-17 Score=120.47 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=88.0
Q ss_pred HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
..+...++.+|||||||+|+.+..++..+++.++|+++|+++++++.+++++...++.++++++++|+.+.++.
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------ 139 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------ 139 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------
Confidence 33345567899999999999999999887656899999999999999999999888877799999998764332
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+||.|+++...... .+.+.+.|+|||.+++.
T Consensus 140 -~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 -HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP 172 (205)
T ss_pred -CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence 3689999998754443 35677899999999885
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.72 E-value=8.5e-17 Score=117.41 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=87.7
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++++..++. +++++++|+.+.. ..+
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--------~~~ 108 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--------HEE 108 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--------ccC
Confidence 344689999999999999999987655 789999999999999999999988875 5999999987741 137
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+||+|++++ ...+..+++.+.++|+|||.+++.
T Consensus 109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 899999976 456778889999999999999974
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=1.6e-16 Score=116.26 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=88.0
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||+|||+|..++.++...+ +++|+++|.++++++.++++++..++.+ ++++++|+.+... .++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~ 112 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEK 112 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCC
Confidence 33478999999999999999998765 7899999999999999999999988865 9999999876421 368
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+|++.. ...+..+++.+.+.|+|||.+++.
T Consensus 113 fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 113 FDVVTSRA-VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 99999975 346778999999999999999985
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=3.6e-17 Score=123.75 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 89 (187)
Q Consensus 10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (187)
.+..+....++.+|||+|||+|..+..+++..++.++|+++|++++|++.|++++...+.. +++++++|+.+. +-
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~--- 112 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PF--- 112 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S---
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cC---
Confidence 3444455678899999999999999999998876899999999999999999999987766 799999999764 21
Q ss_pred cccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 90 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.+++||.|++... .++....++++.++|||||.+++-+...
T Consensus 113 ---~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 113 ---PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp ----TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ---CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 2589999998853 4567789999999999999998866543
No 19
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.72 E-value=9.6e-17 Score=120.07 Aligned_cols=115 Identities=26% Similarity=0.357 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
.|.....+...+...++.+|||||||+|+.+..++...+++++|+++|+++++++.++++++..+.. +++++++|+...
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~ 139 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLG 139 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccC
Confidence 4455555555667778899999999999999999988765689999999999999999999988864 699999998654
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+. ..+||+|++++...... +.+.+.|+|||.+++.
T Consensus 140 ~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 321 47899999987654443 4567789999999884
No 20
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.71 E-value=1.6e-16 Score=119.17 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
.....+..++...++.+|||||||+|+.+..+++..+++++|+++|+++++++.|+++++..++. +++++++|+.+..+
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc
Confidence 33344444556778899999999999999999988765678999999999999999999998874 69999999876432
Q ss_pred HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
. ..+||+|++++...... +.+.+.|+|||++++.
T Consensus 143 ~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 P-------LAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP 176 (215)
T ss_pred c-------cCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence 2 36899999987654443 4567899999999884
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=3.9e-16 Score=119.49 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 89 (187)
Q Consensus 10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (187)
.+...+++.++++|||||||.|..++++|+.+ +.+|+++++|+++.+.+++.+...|+..++++...|-.++
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------ 134 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------ 134 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc------
Confidence 33344457799999999999999999999987 6899999999999999999999999998899999887664
Q ss_pred cccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 90 YSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
.++||.|+.-+ ..+++..+|+.+.+.|+|||.++++.+....
T Consensus 135 ----~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 135 ----EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ----ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 36699998764 4677999999999999999999998877544
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=1.8e-16 Score=112.73 Aligned_cols=108 Identities=27% Similarity=0.387 Sum_probs=89.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++..+.++.+++++|+++++++.|+++++..+.. +++++++|+.+ ++... .+.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence 46789999999999999999965544899999999999999999999998887 79999999987 43210 2689
Q ss_pred eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|+|++... .......++.+.++|+++|.+++.+..
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999853 344567899999999999999987655
No 23
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.70 E-value=8.9e-16 Score=126.18 Aligned_cols=162 Identities=22% Similarity=0.241 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
....+++..++...++.+|||+|||+|..+..++......++|+++|+++++++.++++++.+++.+ ++++++|+.+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~ 316 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLL 316 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcc
Confidence 3445666666667778999999999999999999887656899999999999999999999999864 999999987653
Q ss_pred HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCCCccccC
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAV 139 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~ 139 (187)
.... ...++||.|++|+..+. ....+++++++|||||.|+...+...-
T Consensus 317 ~~~~---~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~---- 389 (434)
T PRK14901 317 ELKP---QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP---- 389 (434)
T ss_pred cccc---cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----
Confidence 2110 01368999999963211 135688889999999999987655311
Q ss_pred CCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----eeec---CCceEEEEEcC
Q 029803 140 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRIF 187 (187)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~G~~~~~~~~ 187 (187)
.+ ........+..+|+|+.. ++|. .+|+-+|+.+|
T Consensus 390 -~E------------ne~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 390 -AE------------NEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred -hh------------HHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 11 133334445567887644 3454 38999988765
No 24
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.70 E-value=8.8e-16 Score=113.60 Aligned_cols=119 Identities=24% Similarity=0.249 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
.+.+..++...+...++.+|||+|||+|..+..++...+ +++|+++|+++++++.++++++..+.. +++++.+|+.+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~ 102 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH
Confidence 344555555566666778999999999999999987655 689999999999999999999988874 599999998765
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
++.+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 103 ~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 4433 245788888753 3557889999999999999998744
No 25
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-16 Score=116.30 Aligned_cols=112 Identities=22% Similarity=0.276 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
.|.....+-.++...++.+|||||||+||.+..+++.. ++|+++|..++..+.|+++++..++.+ +.+.++|...-
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G 132 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKG 132 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccC
Confidence 34445555566678899999999999999999999874 499999999999999999999999976 99999998765
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++. ..+||.|++.+.....+.. +.+.|++||.+++-
T Consensus 133 ~~~-------~aPyD~I~Vtaaa~~vP~~---Ll~QL~~gGrlv~P 168 (209)
T COG2518 133 WPE-------EAPYDRIIVTAAAPEVPEA---LLDQLKPGGRLVIP 168 (209)
T ss_pred CCC-------CCCcCEEEEeeccCCCCHH---HHHhcccCCEEEEE
Confidence 443 4799999999876665544 35789999999984
No 26
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.68 E-value=2.6e-15 Score=116.98 Aligned_cols=117 Identities=15% Similarity=0.272 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803 4 LTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 79 (187)
Q Consensus 4 ~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 79 (187)
.+.++.++...+. ..++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|+..+++.++++++++|
T Consensus 102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D 180 (284)
T TIGR03533 102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD 180 (284)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 3455666655543 23467999999999999999999876 789999999999999999999998887789999999
Q ss_pred hHHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 80 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.++ .++||+|++++.. ..+..+++.+.+.|+|||.++++
T Consensus 181 ~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 181 LFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred hhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 865432 3589999987421 01245678888999999999985
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.68 E-value=2.1e-15 Score=109.12 Aligned_cols=110 Identities=23% Similarity=0.393 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
++|...+...+..+|||+|||+|..++.++...+ ..+|+++|+++.+++.++++++.+++.+ ++++..|..+.++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--- 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--- 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC---
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc---
Confidence 3455555555889999999999999999999876 6789999999999999999999999877 9999999876432
Q ss_pred hcccCCCceeEEEEeCCC----c----ccHHHHHHHHhccCCCeEEEE
Q 029803 89 KYSENEGSFDYAFVDADK----D----NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~----~----~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.++||+|++++.. . ....+++++.+.|+|||.+++
T Consensus 96 -----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 -----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp -----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 3799999998532 1 245688899999999998855
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=1e-15 Score=117.63 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=86.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++.. +.+|+++|+++++++.|++++...++..+++++++|+.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 45679999999999999999985 57999999999999999999998888778999999998753322 4789
Q ss_pred eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++... ..+....++++.++|+|||++++.
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998742 245567899999999999999763
No 29
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.67 E-value=6.6e-15 Score=120.74 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
+....+++..++...++.+|||+|||+|..+..++..+..+++|+++|+++++++.++++++..++. ++++.++|+.+.
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l 300 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERL 300 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhh
Confidence 3444566666777778899999999999999999998765789999999999999999999999886 489999998764
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.... .++||.|++|+.... ....++++++.|+|||.+++..+..
T Consensus 301 ~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 301 TEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 3222 368999999863311 1345788899999999999976653
No 30
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.67 E-value=2.8e-15 Score=123.63 Aligned_cols=122 Identities=21% Similarity=0.257 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
+.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++++++.++++++..++.+ ++++++|+.+.
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~ 313 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKV 313 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccc
Confidence 44556677777777788999999999999999999987547899999999999999999999999865 99999998765
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
...+ .++||+|++|+.... ...+++.+.++|+|||.++...+.
T Consensus 314 ~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 314 HEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3332 268999999964211 134688889999999999986544
No 31
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=1.3e-15 Score=115.36 Aligned_cols=110 Identities=18% Similarity=0.391 Sum_probs=90.0
Q ss_pred HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
.+...++.+|||+|||+|..+..++...++.++++++|+++++++.+++++...+. .+++++++|+.+. + + .
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~ 111 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----D 111 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----C
Confidence 33455678999999999999999998876578999999999999999999987776 4699999998653 1 1 2
Q ss_pred CCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 94 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 94 ~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.++||+|++.. +.+.+...++++.++|+|||.+++.+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 47899999864 345567889999999999999987554
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.66 E-value=1.1e-15 Score=118.01 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=88.6
Q ss_pred HHHHHHHHH---HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 7 HGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 7 ~~~ll~~l~---~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
+...+..++ ...++.+|||||||.|..+.++++.. +++|+++++|++..+.+++.++..++.+++++..+|..+.
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 334444443 47788999999999999999999986 5899999999999999999999999999999999998654
Q ss_pred HHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 84 LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
..+||.|++-. ..+++..+++.+.++|+|||.++++.+....
T Consensus 125 ----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 125 ----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp ------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred ----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 35899998764 3467789999999999999999998766433
No 33
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.66 E-value=1.2e-15 Score=113.28 Aligned_cols=113 Identities=21% Similarity=0.305 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
.+...+.. ++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...++ .+++++++|+.+.++...
T Consensus 32 ~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 32 DWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc
Confidence 33444433 678999999999999999998776 68999999999999999999988776 469999999944444321
Q ss_pred hcccCCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEe
Q 029803 89 KYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..++||+|++..... ....+++++.+.|+|||++++.
T Consensus 108 ----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 108 ----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred ----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 246899999863211 1467899999999999999884
No 34
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.4e-15 Score=113.88 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
..++-..+...++.+|+|.|+|+|..+.++|....+.++|+++|..++.++.|++|++..++.+++++..+|..+...
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-- 160 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-- 160 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--
Confidence 456666677889999999999999999999998877899999999999999999999999999889999999987543
Q ss_pred hhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 88 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+.||.||+|- +...+.++.+.++|+|||.+++-..
T Consensus 161 ------~~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 161 ------EEDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred ------ccccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 35999999985 5678899999999999999998533
No 35
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.66 E-value=5.3e-16 Score=115.29 Aligned_cols=112 Identities=22% Similarity=0.342 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
.++.+++ ++...++.+|||||||+||.+..++....+.++|+++|.+++.++.|++++...+.. +++++++|....++
T Consensus 60 ~~a~~l~-~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 60 MVARMLE-ALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHH-HTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG
T ss_pred HHHHHHH-HHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc
Confidence 3444444 445889999999999999999999988776789999999999999999999998876 69999999876544
Q ss_pred HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
. ..+||.|++.+..+..+. .+.+.|++||.+++-
T Consensus 138 ~-------~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 138 E-------EAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVAP 171 (209)
T ss_dssp G-------G-SEEEEEESSBBSS--H---HHHHTEEEEEEEEEE
T ss_pred c-------CCCcCEEEEeeccchHHH---HHHHhcCCCcEEEEE
Confidence 3 378999999876655443 356789999999983
No 36
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.65 E-value=1e-14 Score=107.72 Aligned_cols=106 Identities=21% Similarity=0.335 Sum_probs=87.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+..++||||||+|..+..++...| +.+++++|+++.+++.+++++...++. +++++++|+.+....+. ..+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence 3567999999999999999999876 789999999999999999999888876 69999999988655432 13589
Q ss_pred eEEEEeCCC---cc--------cHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDADK---DN--------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~~---~~--------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|.|+++... .. ...+++.+.++|+|||.+.+.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 999987421 11 257899999999999999873
No 37
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.65 E-value=2.3e-14 Score=110.59 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
..+...++...++.+|||+|||+|..++.++..+...++|+++|+++.+++.++++++.+++. ++++++.|+......
T Consensus 60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~- 137 (264)
T TIGR00446 60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAA- 137 (264)
T ss_pred HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhh-
Confidence 344445556667789999999999999999998765689999999999999999999999875 599999998664222
Q ss_pred hhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 88 LKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.++||.|++|+.... ...+++.++++|+|||+|+......
T Consensus 138 ------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 138 ------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred ------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 356999999853221 1347888889999999999875543
No 38
>PRK00811 spermidine synthase; Provisional
Probab=99.65 E-value=1.3e-14 Score=113.08 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=86.9
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C--CCcEEEEEcchHHHHHHHhhccc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
..+|++||+||||.|..+.++++..+ ..+|+++|+++++++.+++++...+ . .++++++.+|+..+++..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~----- 147 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET----- 147 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence 45789999999999999999987533 5799999999999999999987532 1 468999999999877652
Q ss_pred CCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|...+ ...++++.+.+.|+|||++++.
T Consensus 148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 47899999986322 1256789999999999999974
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=2.6e-15 Score=115.71 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=88.2
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh--cCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
....++.+|||+|||+|..+..+++..++.++|+++|++++|++.|+++... .....+++++++|+.+. + .
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p------~ 141 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P------F 141 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C------C
Confidence 3455778999999999999999988765468999999999999999887542 22234699999998653 1 1
Q ss_pred CCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 93 NEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 93 ~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.+++||+|++.. ...+...+++++.+.|||||.+++.+...
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 257899998864 33466788999999999999998876653
No 40
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=1.6e-14 Score=113.66 Aligned_cols=117 Identities=15% Similarity=0.275 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHH-H-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803 4 LTIHGQLMAMLLR-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 79 (187)
Q Consensus 4 ~~~~~~ll~~l~~-~-~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 79 (187)
.+.+..++...+. . . ++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|++.+++.++++++++|
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 3455566555443 1 2 237899999999999999998876 789999999999999999999998887789999999
Q ss_pred hHHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 80 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.++ .++||+|+++... ..+..+++.+.+.|+|||.+++.
T Consensus 193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 866432 2579999987411 11346678888999999999985
No 41
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=1.2e-14 Score=119.23 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
+.....++..++...++.+|||+|||+|..+..++...+ +++|+++|+++++++.++++++..++. ++++++|+.+.
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~ 305 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDP 305 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccc
Confidence 344455666666777889999999999999999998875 589999999999999999999988864 68999998754
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
...+ ..++||.|++|+.... ...+++.+.++|+|||.+++..+.
T Consensus 306 ~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 306 AQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred hhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2211 1368999999863211 125788888999999999987654
No 42
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=8.3e-15 Score=120.84 Aligned_cols=119 Identities=24% Similarity=0.246 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
....+...++...++.+|||+|||+|..+..++..++..++|+++|+++++++.++++++..++. +++++++|+.+..+
T Consensus 237 ~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~ 315 (445)
T PRK14904 237 PTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP 315 (445)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc
Confidence 34445555556667789999999999999999987765679999999999999999999998885 59999999876431
Q ss_pred HHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 86 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.++||.|++|+.... ...+++.+++.|+|||.+++..+..
T Consensus 316 --------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 316 --------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred --------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 368999999853210 1247888899999999999976553
No 43
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.63 E-value=1.3e-14 Score=119.07 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
.....++..++...++.+|||+|||+|+.+..++..++ .++|+++|+++++++.++++++..++..++++..+|.....
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34456666666777889999999999999999999886 78999999999999999999999887644455667764321
Q ss_pred HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
. +. ..++||.|++|+.... ...++++++++|+|||.+++..+..
T Consensus 303 ~-~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 303 Q-WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred c-cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 00 1368999999853211 1357888899999999999976664
No 44
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.63 E-value=4.5e-16 Score=104.04 Aligned_cols=102 Identities=31% Similarity=0.571 Sum_probs=51.5
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 24 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 24 LeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
||||++.|.++.++++.+++.. +++++|..+. .+.+++.+++.++.++++++.+++.+.++.+. .++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999887554 7999999886 44556666666777789999999999888773 37999999
Q ss_pred EeCCC--cccHHHHHHHHhccCCCeEEEEeCC
Q 029803 102 VDADK--DNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 102 ~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+|+.+ +.....++.+++.|+|||+|++||+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 99865 5567789999999999999999974
No 45
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=4.3e-15 Score=111.89 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
+-||..++......+|||+|||+|..++.+|+..+ ..++++||+++++++.|+++++.+++.++++++++|..++.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 45777888877889999999999999999999876 59999999999999999999999999999999999998877654
Q ss_pred hhcccCCCceeEEEEeCCC---------------------cccHHHHHHHHhccCCCeEEEE
Q 029803 88 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...+||+|++++.. -...++++.+..+||+||.+.+
T Consensus 112 -----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 112 -----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred -----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 23579999998421 0124677888899999999987
No 46
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.63 E-value=5.7e-15 Score=100.18 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=85.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
+.+|||+|||+|..+..+++.. ..+++++|++|..++.++.++...+...+++++++|..+..+.+ ..++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence 3589999999999999999875 47999999999999999999999988888999999998876433 3589999
Q ss_pred EEEeCCCc-----------ccHHHHHHHHhccCCCeEEEE
Q 029803 100 AFVDADKD-----------NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 100 i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+.+.... .+..+++++.++|+|||.+++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99985321 245789999999999999886
No 47
>PRK01581 speE spermidine synthase; Validated
Probab=99.63 E-value=3.6e-14 Score=112.31 Aligned_cols=107 Identities=15% Similarity=0.235 Sum_probs=85.6
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH--HH---hcCC-CCcEEEEEcchHHHHHHHhh
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IK---KAGV-DHKINFIESEALSVLDQLLK 89 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~---~~~~-~~~~~~~~~d~~~~~~~~~~ 89 (187)
...+|++||+||||+|..+..+++.. +..+|+++|+++++++.|++. +. ...+ .++++++.+|+.+++...
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-- 223 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-- 223 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence 36788999999999999988888753 367999999999999999973 11 1122 468999999999987653
Q ss_pred cccCCCceeEEEEeCCCc-------c-cHHHHHHHHhccCCCeEEEEe
Q 029803 90 YSENEGSFDYAFVDADKD-------N-YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~~~~-------~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|...+ . ..++++.+.+.|+|||++++.
T Consensus 224 ----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 ----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 46899999996322 1 256899999999999999885
No 48
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.62 E-value=3.7e-15 Score=113.02 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH-HH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VL 84 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~ 84 (187)
.=..++-..+...++.+|||.|+|+|..+.++++.+.+.++|+++|..++.++.|+++++.+++.+++++.+.|..+ .+
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 33456667778899999999999999999999998877999999999999999999999999999899999999964 22
Q ss_pred HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhcc-CCCeEEEEe
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYD 129 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L-~~gG~lv~~ 129 (187)
+. .....+|.||+|. +.....+..+.+.| ++||.+++-
T Consensus 107 ~~-----~~~~~~DavfLDl--p~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 107 DE-----ELESDFDAVFLDL--PDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp ST-----T-TTSEEEEEEES--SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred cc-----cccCcccEEEEeC--CCHHHHHHHHHHHHhcCCceEEEE
Confidence 11 0136899999996 45567788889999 899999884
No 49
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.62 E-value=4.8e-14 Score=114.22 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=88.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++++|||+|||+|.+++.++.. ...+|+++|+++.+++.+++|++.+++. .+++++++|+.+.+..+... .+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC
Confidence 457889999999999998876653 2459999999999999999999999886 47999999999987765321 46
Q ss_pred ceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803 96 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 96 ~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+||+|++|+.. ..|..+++.+.++|+|||++++..
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 89999999642 135566777889999999998743
No 50
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=1.3e-14 Score=111.03 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=86.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++.+|||+|||+|..+..+++.+ .++.+++++|+++++++.|++++...+...+++++++|+.+. + .+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C--------CCC
Confidence 466799999999999999888753 247899999999999999999999888777899999998653 1 246
Q ss_pred eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|+|++... ......+++++.+.|+|||.+++.+.+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 899887532 223457899999999999999997754
No 51
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=2.8e-14 Score=108.69 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=86.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++.+|||+|||+|..+..+++.++ ++.+++++|+++++++.|++++...+...+++++++|+.+.. ...
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence 3667999999999999999998753 378999999999999999999987766667999999987641 246
Q ss_pred eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 898877542 1234678999999999999999987654
No 52
>PLN02366 spermidine synthase
Probab=99.61 E-value=5.8e-14 Score=110.13 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=88.0
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
..++++||+||||.|..+.++++. +...+|+.+|++++.++.+++.+...+ + .++++++.+|+.+++... .
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~ 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----P 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----c
Confidence 467899999999999999999886 435799999999999999999987532 2 368999999999887653 1
Q ss_pred CCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|...+ ...++++.+.+.|+|||+++..
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 36899999996432 1356899999999999999874
No 53
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.61 E-value=7e-15 Score=109.28 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=87.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||.|..+..+|+. +.+|+++|++++.++.|+.+....++. ++..+..+.+.... +++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~F 125 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQF 125 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCc
Confidence 47889999999999999999986 689999999999999999998887764 66777777665432 4899
Q ss_pred eEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 98 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 98 D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|+|+|-- +.++...+++.|.+++||||.++++.+.+
T Consensus 126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999863 34566779999999999999999987653
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=1.1e-14 Score=116.30 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=88.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.++++.+..++.++++++++|+.+. + ...++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~------~~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P------FEDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C------CCCCCc
Confidence 466899999999999999999865 5799999999999999999998888877899999998653 1 125799
Q ss_pred eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|+|++... ..+...+++++.++|||||.+++.+..
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998542 345567899999999999999986544
No 55
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.61 E-value=9.4e-15 Score=109.36 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
.+.....+..+++..++.+|||+|||+|+.+..++... .+++++|+++++++.++++++..++.+ +++.++|+.+.
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~ 138 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKG 138 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccC
Confidence 45555565666677788999999999999999888763 489999999999999999999888764 99999997553
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 139 ~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 139 WPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred CCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 221 3689999998755443 45677899999999985
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.60 E-value=2e-14 Score=108.41 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=87.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
++|||||||+|..+..+++.++ +.+++++|+++++++.+++++...++..+++++.+|..+. + + .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence 4799999999999999998876 6899999999999999999999888888899999987543 1 1 3589999
Q ss_pred EEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 101 FVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 101 ~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
++.. ...+...+++++.++|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 8652 2345678999999999999999998764
No 57
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=1.4e-14 Score=114.25 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=84.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
++.+|||||||+|..+..+++. +.+|+++|+++++++.|+++....+...+++++++++.+... ..++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence 4568999999999999988863 679999999999999999987665555579999999866421 147899
Q ss_pred EEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 99 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 99 ~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|++.. ...+...+++.+.++|||||.+++....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999864 2345678999999999999999997543
No 58
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.59 E-value=5.6e-14 Score=112.75 Aligned_cols=115 Identities=21% Similarity=0.328 Sum_probs=96.6
Q ss_pred HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029803 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS 91 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 91 (187)
.+....++++||++.|+||..++..|..- ..+|++||.|...++.|++|++.+++. .++.++++|+++++......
T Consensus 211 ~l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~- 287 (393)
T COG1092 211 ALGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR- 287 (393)
T ss_pred HHhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence 34445569999999999999999998862 249999999999999999999999986 66899999999999887544
Q ss_pred cCCCceeEEEEeCC------------CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 92 ENEGSFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 92 ~~~~~~D~i~~d~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+.+||+|++|+. ...|...+..+.++|+|||++++....
T Consensus 288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 569999999963 134667888889999999999987655
No 59
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=1.2e-14 Score=107.64 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=82.2
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++....++. ++++...|..+. .+ .
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~ 93 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------D 93 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------C
Confidence 34567789999999999999999975 569999999999999999998887774 488888887653 11 3
Q ss_pred CceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++||+|++... ......+++++.++|+|||++++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 57999997642 12456789999999999999654
No 60
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.59 E-value=2.2e-13 Score=104.40 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=84.6
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 6 IHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 6 ~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
.+..++..+.. ..++.+|||+|||+|..++.+++. . ..+++++|+++.+++.|++++..+++..++.+..++
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----- 177 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----- 177 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----
Confidence 34445555544 347889999999999999877764 3 347999999999999999999988775444443322
Q ss_pred HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.+||+|+++........+++++.+.|+|||++++.+..
T Consensus 178 ----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 ----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 26999998766566677889999999999999997554
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.59 E-value=6.2e-14 Score=109.55 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=90.5
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 6 IHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 6 ~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
.+...+..+.. ..++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++..+++..++.+..++....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~- 221 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP- 221 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence 33334444433 346789999999999999888764 3 4699999999999999999999888877777777763221
Q ss_pred HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
..++||+|+++........+++.+.++|+|||++++....
T Consensus 222 --------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 --------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred --------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1468999999876666678889999999999999997654
No 62
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=1.9e-14 Score=111.67 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=90.8
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
....++.+|||+|||+|..+..++....+.++|+++|+++++++.++++....++. ++++..+|+.+. + + ..
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~ 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----AD 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CC
Confidence 34567889999999999998888877655679999999999999999999888775 689999997553 1 1 24
Q ss_pred CceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803 95 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG 134 (187)
Q Consensus 95 ~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
++||+|++... ..+....++++.++|+|||.+++.+....
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 68999997742 33556789999999999999999876643
No 63
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=2.5e-14 Score=105.70 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=81.0
Q ss_pred HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
..+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++....++. ++....|.... + +
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~----- 91 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L----- 91 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----
Confidence 3445567889999999999999999974 579999999999999999988877763 66777776432 1 1
Q ss_pred CCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++... ......+++++.++|+|||++++.
T Consensus 92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 357999987632 234567899999999999986553
No 64
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.57 E-value=2.3e-13 Score=105.38 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=86.5
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
..+|++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+ . ..+++++.+|+.+.+...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 45678999999999999988887653 5789999999999999999886543 1 257899999998877653
Q ss_pred CCceeEEEEeCCCc-----c--cHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~-----~--~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... . ..++++.+.+.|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 47899999986421 1 357889999999999999985
No 65
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.57 E-value=3.3e-13 Score=98.79 Aligned_cols=157 Identities=19% Similarity=0.238 Sum_probs=119.7
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 79 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 79 (187)
.+|..++||..++.-.+.+.|+|+++..|. +++.|+.+. ..+++++||-++++.+...++.+...++.+.++|+.++
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 467889999999999999999999877543 344444332 23799999999999988899998888888778999998
Q ss_pred hH-HHHHHHhhcccCCCceeEEEEeCCCcccH-HHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHH
Q 029803 80 AL-SVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 157 (187)
Q Consensus 80 ~~-~~~~~~~~~~~~~~~~D~i~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (187)
.. +.++.+ ...|++++|+..+++. ..++.+ ++-+.|.+++..|.+..+. . --
T Consensus 105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~ 158 (218)
T PF07279_consen 105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GF 158 (218)
T ss_pred CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Cc
Confidence 54 466665 7899999999888777 677654 5445667777787764221 0 12
Q ss_pred HHHHHhhcCCCeEEEeeecCCceEEEEE
Q 029803 158 DLNRSLADDPRVQLSHVALGDGITICRR 185 (187)
Q Consensus 158 ~~~~~l~~~~~~~~~~lp~~~G~~~~~~ 185 (187)
.|...++..+.+.+++||+|.|+.|++-
T Consensus 159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 159 SWRSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred cHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence 4555667778899999999999999873
No 66
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.56 E-value=6.2e-14 Score=109.39 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHH---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 5 TIHGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 5 ~~~~~ll~~l~~~---~~~-~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
+.+..++...... .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..+++.++++++++|.
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 3445555554432 233 6899999999999999999876 7899999999999999999999888877799999998
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+.++ ..+||+|+++... ..+..+++++.+.|+|||++++.-
T Consensus 175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 76321 2489999987310 024457788889999999999863
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.56 E-value=2e-13 Score=99.62 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
..+|...+...++.+|||+|||+|..+..++... .+++++|+++++++.+++++...+. +++++.+|..+..
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--- 79 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---
Confidence 3566666677788999999999999999998753 3899999999999999999987765 4888999976531
Q ss_pred hhcccCCCceeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEEeC
Q 029803 88 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|+++.... ....+++++.++|+|||.+++..
T Consensus 80 ------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 ------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 25899999874210 03457888899999999988853
No 68
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=9.9e-14 Score=109.39 Aligned_cols=104 Identities=22% Similarity=0.394 Sum_probs=84.0
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
+...++.+|||||||+|+.+..+++..+..++|+++|.++++++.|+++++..+.. ++.++++|+.+..+. .
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~ 147 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------F 147 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-------c
Confidence 34567789999999999999999988764568999999999999999999988874 689999998664332 3
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+||+|+++....+. .+.+.+.|+|||.+++.
T Consensus 148 ~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 679999998654433 34467899999998874
No 69
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.55 E-value=3.9e-13 Score=99.31 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
..++..+....++.+|||+|||+|..++.++... ..+|+++|.++++++.+++|++.++.. +++++++|+.+.++..
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~ 118 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP 118 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc
Confidence 3345555555567899999999999998755443 369999999999999999999998875 6999999998766432
Q ss_pred hhcccCCCceeEEEEeCC-Ccc-cHHHHHHHHh--ccCCCeEEEEe
Q 029803 88 LKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYD 129 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~-~~~-~~~~~~~~~~--~L~~gG~lv~~ 129 (187)
.++||+||+|+. ... ....++.+.+ +|+++++++++
T Consensus 119 ------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 119 ------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred ------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 357999999976 233 3344454443 47899999886
No 70
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=5.8e-14 Score=112.69 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=82.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
..+|||+|||+|..++.+++..| ..+|+++|.++.+++.++++++.++.. .+++++.+|..+.++ ..+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~f 299 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF 299 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCE
Confidence 46999999999999999999877 789999999999999999999877643 368899988765321 3589
Q ss_pred eEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|+++... .....+++.+.+.|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 999997532 11346788889999999998875
No 71
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=3.7e-14 Score=109.16 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=81.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||||||+|..+..++...+ +.+|+++|+++.+++.+++++ .+++++.+|+.+..+ .++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~ 93 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQA 93 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCC
Confidence 45678999999999999999998876 789999999999999998874 247889999865421 368
Q ss_pred eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+|++... ..+...+++++.+.|+|||.+++.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999998753 345678899999999999999885
No 72
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.55 E-value=9.9e-14 Score=120.01 Aligned_cols=110 Identities=19% Similarity=0.318 Sum_probs=91.2
Q ss_pred HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhccc
Q 029803 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
+....++++|||+|||+|.++++++..- ..+|+++|+++.+++.+++|++.+++. ++++++++|+.+.+..+
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 3445678999999999999999999852 347999999999999999999999886 68999999999877654
Q ss_pred CCCceeEEEEeCCC--------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803 93 NEGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 93 ~~~~~D~i~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.++||+|++|+.. ..+...++.+.++|+|||++++...
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4689999999642 1245678888899999999988644
No 73
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=3.3e-14 Score=109.29 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=79.3
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||||||+|..+..++...+ +.+|+++|+++.+++.+++. +++++++|+.+..+ .++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~ 89 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPD 89 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCC
Confidence 34678999999999999999998876 78999999999999988753 37788999865421 368
Q ss_pred eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+|++... ..+....++++.+.|+|||.+++.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 999998752 345677899999999999999885
No 74
>PRK04266 fibrillarin; Provisional
Probab=99.54 E-value=7e-14 Score=105.33 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=82.2
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
+...++.+|||+|||+|..+..++...+ .++|+++|+++++++.+.++++.. .++.++.+|+.+..... ...
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~----~l~ 139 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYA----HVV 139 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhh----hcc
Confidence 4566888999999999999999999876 689999999999999888776543 35888899986421110 013
Q ss_pred CceeEEEEeCCCc-ccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~-~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++||+|+++.... .....++++.+.|||||.+++.
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 5699999876432 2234578999999999999984
No 75
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.54 E-value=9.4e-14 Score=109.47 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=91.9
Q ss_pred HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (187)
+.......+..+|||||||+|..+..+++..| +.+++++|. |++++.++++++..++.++++++.+|+.+. .
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~---- 212 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S---- 212 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C----
Confidence 33334456778999999999999999999987 789999997 789999999999999888999999998752 1
Q ss_pred ccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 91 SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 91 ~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
.+.+|+|++.. ........++++.+.|+|||.+++.+..+..
T Consensus 213 ---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 213 ---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred ---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 13479987664 1223456899999999999999998876543
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.5e-13 Score=104.20 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=87.8
Q ss_pred HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
+.-.|..+-. ..++++|||+|||+|..++..++.- ..+++++|++|.+++.+++|++.+++...++....+..+..
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~- 225 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP- 225 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-
Confidence 3334444433 3488999999999999999888753 46899999999999999999999988753333333333321
Q ss_pred HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
..++||+|+++--..-...+...+.++++|||+++++.++
T Consensus 226 -------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 226 -------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred -------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 1369999998754455567788888999999999998766
No 77
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=3e-14 Score=94.38 Aligned_cols=93 Identities=20% Similarity=0.378 Sum_probs=72.9
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 23 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 23 vLeiG~g~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
|||+|||+|..+..++..++. ..+++++|+++++++.++++....+. +++++++|+.+. +.. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence 799999999999999988732 37999999999999999999887655 689999999774 332 5799999
Q ss_pred EEeCC------CcccHHHHHHHHhccCCCe
Q 029803 101 FVDAD------KDNYCNYHERLMKLLKVGG 124 (187)
Q Consensus 101 ~~d~~------~~~~~~~~~~~~~~L~~gG 124 (187)
++... .+....+++++.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99432 2345678999999999998
No 78
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=1.4e-14 Score=94.20 Aligned_cols=92 Identities=24% Similarity=0.310 Sum_probs=73.3
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029803 24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 103 (187)
Q Consensus 24 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d 103 (187)
||+|||+|..+..+++. + ..+++++|+++++++.++++... ..+.+.++|+.+. + ..+++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~------~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-P------FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-S------S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-c------cccccccccccc
Confidence 79999999999999987 3 78999999999999999998754 3356899997664 2 135899999987
Q ss_pred CC---CcccHHHHHHHHhccCCCeEEEE
Q 029803 104 AD---KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 104 ~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.. .++...+++++.+.|||||++++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 52 35677899999999999999985
No 79
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.53 E-value=2.4e-13 Score=105.74 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 5 TIHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 5 ~~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
+.+...|..+-+. .++++|||+|||+|..++..++. . ..+|+++|++|.+++.|++|+..+++..++.+. ...+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence 3455566666664 45689999999999999988875 3 468999999999999999999999998877663 11111
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
...+||+|+.+-...-....+..+.++|+|||+++++.++
T Consensus 222 ---------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 222 ---------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp ---------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ---------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 1379999998866666677788888999999999998766
No 80
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.53 E-value=4e-14 Score=103.31 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=85.2
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|+|+|||.|.++..+++..| .+.++++|.|++|++.|+... .+.++..+|+.++-+ ..+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQP 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCc
Confidence 55788999999999999999999998 899999999999999997764 358899999877633 368
Q ss_pred eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.|++|.++ +-++....+.+++..|.|||+|.++
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 99999885 4567778999999999999999885
No 81
>PLN02823 spermine synthase
Probab=99.53 E-value=6.3e-13 Score=105.36 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=86.5
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---CCCcEEEEEcchHHHHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
..+|++||.||+|.|..+.++++..+ ..+++.+|++++.++.+++++...+ ..++++++.+|+..++...
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------ 173 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------ 173 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence 44789999999999999999988643 5799999999999999999986432 2468999999999988652
Q ss_pred CCceeEEEEeCCCc---------ccHHHHH-HHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 129 (187)
.++||+||+|...+ ...++++ .+.+.|+|||++++.
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 47899999995321 1346787 889999999999885
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=9.4e-14 Score=115.97 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
+.+|||+|||+|..++.++...+ +.+++++|+|+.+++.|++|+..+++.++++++++|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999998876 789999999999999999999988887789999999865322 358999
Q ss_pred EEEeCCC-----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 100 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 100 i~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+++... ..+..+++.+.+.|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9986310 11234567777899999999985
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=2.5e-13 Score=103.94 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 6 IHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 6 ~~~~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
.+..++..+.... ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|+.+.
T Consensus 72 ~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 149 (251)
T TIGR03534 72 DTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP 149 (251)
T ss_pred ChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc
Confidence 3445555555433 445899999999999999999876 789999999999999999999988875 699999998763
Q ss_pred HHHHhhcccCCCceeEEEEeCCCc-----------------------------ccHHHHHHHHhccCCCeEEEEe
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++ .++||+|+++.... .+..+++.+.++|+|||.+++.
T Consensus 150 ~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 150 LP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred Cc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 22 47899999864210 0235678888999999999985
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=1.4e-13 Score=107.52 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=81.4
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..+.+++.. +.+|+++|+++.+++.++++....++ ++++...|..+.. + .+
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~ 183 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QE 183 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cC
Confidence 3456789999999999999999874 57999999999999999999888776 4888888875421 1 37
Q ss_pred ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEE
Q 029803 96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+||+|++.. ..+....+++++.+.|+|||++++
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 899998764 223567789999999999999665
No 85
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.52 E-value=6.2e-13 Score=97.07 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 6 IHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 6 ~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
....+...+-.. .++.++||+.||+|..+++.++.. ..+|+.+|.+++.+...++|++..+..++++++.+|+...+
T Consensus 28 vrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 28 VREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 344555666556 789999999999999999988764 36999999999999999999999998888999999999887
Q ss_pred HHHhhcccCCCceeEEEEeCCCc--c-cHHHHHHHH--hccCCCeEEEEeC
Q 029803 85 DQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDN 130 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~ 130 (187)
...... ..+||+||+|+... . +...++.+. .+|+++|++++..
T Consensus 106 ~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 106 LKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred Hhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 765322 57999999997543 2 356777776 7999999999963
No 86
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=1e-13 Score=106.96 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
..++.. +...++.+|||||||+|..+..++... +.+|+++|+++.+++.+++++.. .+++.+..+|+.+. + +
T Consensus 42 ~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~ 113 (263)
T PTZ00098 42 TKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F 113 (263)
T ss_pred HHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C
Confidence 334433 245677899999999999999988753 57999999999999999988653 34689999997642 1 1
Q ss_pred hhcccCCCceeEEEEeC---C--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 88 LKYSENEGSFDYAFVDA---D--KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~---~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
..++||+|++.. . ..+...+++++.++|+|||.+++.+...
T Consensus 114 -----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 114 -----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred -----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 247899999842 1 1356778999999999999999987654
No 87
>PRK08317 hypothetical protein; Provisional
Probab=99.51 E-value=6.6e-13 Score=100.52 Aligned_cols=115 Identities=19% Similarity=0.333 Sum_probs=89.5
Q ss_pred HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (187)
+...+...++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++.. ....++++..+|+.+. + +
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~-~-~--- 83 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGL-P-F--- 83 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccC-C-C---
Confidence 3344456678899999999999999999887447899999999999999998833 2234688998887542 1 1
Q ss_pred ccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803 91 SENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 134 (187)
Q Consensus 91 ~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
..++||+|++.. ...+...+++++.++|+|||.+++.+..+.
T Consensus 84 --~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 128 (241)
T PRK08317 84 --PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWD 128 (241)
T ss_pred --CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 247899999874 234567789999999999999998765543
No 88
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.51 E-value=4.8e-13 Score=103.55 Aligned_cols=109 Identities=24% Similarity=0.383 Sum_probs=85.2
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccC
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
....++++||++.|++|.+++..+..- ..+|+++|.|..+++.+++|+..+++. .+++++.+|+++.+..+..
T Consensus 119 ~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---- 192 (286)
T PF10672_consen 119 RKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---- 192 (286)
T ss_dssp HHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----
T ss_pred HHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----
Confidence 345678999999999999999877642 358999999999999999999999986 6899999999998877543
Q ss_pred CCceeEEEEeCCC---------cccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~---------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|+.. ..|...+..+.++|+|||+|++.
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3699999999632 34667888889999999998764
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.50 E-value=5.4e-13 Score=106.92 Aligned_cols=103 Identities=24% Similarity=0.313 Sum_probs=86.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
....+||||||+|..+..+|...| +..++++|+++.+++.+.+++...++. ++.++++|+...+..+ ..+++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCcee
Confidence 456899999999999999999986 889999999999999999999988886 5999999998765443 357999
Q ss_pred EEEEeCCCc---c------cHHHHHHHHhccCCCeEEEE
Q 029803 99 YAFVDADKD---N------YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 99 ~i~~d~~~~---~------~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|++....+ . ...+++.+.++|+|||.+.+
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 999864211 1 25789999999999999887
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=99.50 E-value=5e-13 Score=97.86 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHH
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL 87 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~ 87 (187)
.++...+...++++|||+|||+|.++..++.. +.+++++|.++++++.+++++...++.++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 33444444567889999999999999999886 57999999999999999999988777544 8888888765322
Q ss_pred hhcccCCCceeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEEe
Q 029803 88 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+||+|+++.... ....+++++.+.|+|||.+++.
T Consensus 88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 24899999864210 1345789999999999988764
No 91
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.50 E-value=1.9e-12 Score=95.08 Aligned_cols=113 Identities=11% Similarity=-0.021 Sum_probs=87.5
Q ss_pred HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803 12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 91 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (187)
..+....++.++||++||+|..++.+++... .+|+++|.++++++.+++|++.++..++++++++|+.+.+..+...
T Consensus 42 ~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~- 118 (189)
T TIGR00095 42 NILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK- 118 (189)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc-
Confidence 3333344788999999999999999998643 4899999999999999999999888777999999998876654211
Q ss_pred cCCCceeEEEEeCCC--cccHHHHHHHH--hccCCCeEEEEe
Q 029803 92 ENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD 129 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~ 129 (187)
...||+||.|+.. ..+...++.+. .+|+++|++++.
T Consensus 119 --~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 119 --PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred --CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2358999999743 23444555554 479999999986
No 92
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.50 E-value=4.3e-14 Score=102.42 Aligned_cols=143 Identities=18% Similarity=0.265 Sum_probs=92.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+-.++||+|||.|.++..+|... .+++++|+++.+++.|++++... .++++.+.+..+..+ .++|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~F 107 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRF 107 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-E
T ss_pred cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCe
Confidence 344689999999999999999875 49999999999999999988643 469999999977644 4899
Q ss_pred eEEEEeC-----C-CcccHHHHHHHHhccCCCeEEEEeCCC-----CCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029803 98 DYAFVDA-----D-KDNYCNYHERLMKLLKVGGIAVYDNTL-----WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 166 (187)
Q Consensus 98 D~i~~d~-----~-~~~~~~~~~~~~~~L~~gG~lv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (187)
|+|++.- . ......+++.+...|+|||.+|+-... ..|+.. + ..-.++-|.+.+..-
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~-----------g-a~tv~~~~~~~~~~~ 175 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA-----------G-AETVLEMLQEHLTEV 175 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--------------HHHHHHHHHHHSEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc-----------c-hHHHHHHHHHHhhhe
Confidence 9999873 1 234556788889999999999984321 112111 1 222345556666554
Q ss_pred CCeEEEeeecCCceEEEEEc
Q 029803 167 PRVQLSHVALGDGITICRRI 186 (187)
Q Consensus 167 ~~~~~~~lp~~~G~~~~~~~ 186 (187)
.+++..--..+..-.+++-+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~ 195 (201)
T PF05401_consen 176 ERVECRGGSPNEDCLLARFR 195 (201)
T ss_dssp EEEEEE-SSTTSEEEEEEEE
T ss_pred eEEEEcCCCCCCceEeeeec
Confidence 44444444455555555543
No 93
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.49 E-value=4.8e-13 Score=101.41 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=88.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+...+++++.+|+.+... ..++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~ 121 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNS 121 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCC
Confidence 335689999999999999999988754689999999999999999998776666678999999865321 2468
Q ss_pred eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
||+|++.. ........++.+.++|+|||.+++.+..
T Consensus 122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 99998764 3345678899999999999999875543
No 94
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=5.9e-13 Score=105.44 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=81.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++++|||||||+|+.+..++...+ .+|+++|+++.++..++..-...+...+++++.+++.+. +. .++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence 4678999999999999999988643 479999999988876554333333344699999988654 21 3789
Q ss_pred eEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803 98 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 134 (187)
Q Consensus 98 D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
|+|++.+ +..+....++++.+.|+|||.++++.....
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVID 230 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence 9999864 234567889999999999999999765443
No 95
>PRK06922 hypothetical protein; Provisional
Probab=99.49 E-value=6.3e-13 Score=111.92 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=88.8
Q ss_pred HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803 12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 91 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (187)
..+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++....+ .+++++++|+.+. +..
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dL-p~~---- 482 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINL-SSS---- 482 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhC-ccc----
Confidence 4455566889999999999999999988776 8999999999999999998876544 3588899998763 221
Q ss_pred cCCCceeEEEEeCC----------------CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 92 ENEGSFDYAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 92 ~~~~~~D~i~~d~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
..+++||+|++... ......+++++.+.|||||.+++.+...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 12478999987521 1234678999999999999999976543
No 96
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.49 E-value=9.1e-15 Score=96.42 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=62.3
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029803 24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 103 (187)
Q Consensus 24 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d 103 (187)
||||||+|..+..++..++ ..+++++|+|+.+++.+++++....... ......+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence 7999999999999999986 8999999999999999999998876543 333333333322211 12599999987
Q ss_pred C---CCcccHHHHHHHHhccCCCeEE
Q 029803 104 A---DKDNYCNYHERLMKLLKVGGIA 126 (187)
Q Consensus 104 ~---~~~~~~~~~~~~~~~L~~gG~l 126 (187)
. +.+.....++++.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 4 2356678999999999999986
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.48 E-value=9e-13 Score=101.02 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 6 IHGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 6 ~~~~ll~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
.+..++....... ++.+|||+|||+|..++.++...+ +.+++++|+++.+++.+++|+..++ .+++++|..
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~ 143 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY 143 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence 3444444444322 245899999999999999998776 6799999999999999999998755 368899987
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCCc-----------------------------ccHHHHHHHHhccCCCeEEEEe
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+.++... .++||+|+++.... .+..+++.+.++|+|||.+++.
T Consensus 144 ~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 DALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6544311 35799999985211 0235677777999999999985
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=6.6e-13 Score=107.12 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
.+.+..++..+... .++.+|||+|||+|..++.++...+ +.+++++|+|+++++.+++|++..+. +++++++|..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e 311 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFD 311 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhc
Confidence 35566777766553 3557999999999999999988766 78999999999999999999987764 69999999865
Q ss_pred HHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 83 VLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.... ..++||+|++++.. ..+..+++.+.+.|+|||.+++.
T Consensus 312 ~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 312 TDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred cccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3110 13579999997521 01234566667899999998874
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.48 E-value=5.1e-13 Score=106.31 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
.+..+..+..++...++.+|||+|||+|..++.++.. +.+++++|+++.++..+++|++.+++.+ +++.++|+.+.
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l 242 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL 242 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence 4556666666677778889999999999998887653 6799999999999999999999988876 88999998763
Q ss_pred HHHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 84 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+. ..++||+|++|... ..+..+++.+.+.|+|||.+++.
T Consensus 243 -~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 243 -PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred -Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 21 14689999998421 11567889999999999998874
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=3.6e-13 Score=112.13 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
.++..+ ...++.+|||||||+|..+..++... +.+++++|+++++++.|+++.. +...++++.++|..+.. +
T Consensus 257 ~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~- 328 (475)
T PLN02336 257 EFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y- 328 (475)
T ss_pred HHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-
Confidence 344433 24567899999999999999998865 5799999999999999998865 33457899999986531 1
Q ss_pred hcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 89 KYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
..++||+|++.. +..+...+++++.+.|+|||.+++.+...
T Consensus 329 ----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 ----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 246899999864 33456789999999999999999987654
No 101
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=1.1e-12 Score=98.93 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=79.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..+..+|||+|||+|..+..++.. + ..+++++|+++++++.+++++...+. +++++++|..+.++ .++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~ 101 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRP 101 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCC
Confidence 345679999999999999998874 2 35999999999999999999987765 48888998866422 368
Q ss_pred eeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
||+|+++.... .+..+++++.++|++||.+++
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999984210 024567888899999999987
No 102
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.47 E-value=3.3e-12 Score=98.81 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=91.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
..+|++||-||.|.|..+.++++..+ -.+++.+|++++.++.+++.+.... . .+|++++.+|..+++...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------ 146 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------ 146 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence 44668999999999999999999876 7899999999999999999988644 2 378999999999998874
Q ss_pred CCceeEEEEeCCCc-c------cHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKD-N------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~-~------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... . ...+++.|.+.|+++|+++..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 35899999997432 2 368999999999999999986
No 103
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=5.7e-13 Score=106.17 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 86 (187)
+..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++. .+++.+|..+.
T Consensus 185 t~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--- 257 (342)
T PRK09489 185 SQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--- 257 (342)
T ss_pred HHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---
Confidence 3444554433 3456899999999999999998876 789999999999999999999988764 46677776542
Q ss_pred HhhcccCCCceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEE
Q 029803 87 LLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
. .++||+|+++... .....+++.+.+.|+|||.+++
T Consensus 258 ~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 258 I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 1 3689999997532 2246789999999999998866
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=5.4e-13 Score=103.53 Aligned_cols=114 Identities=24% Similarity=0.379 Sum_probs=87.2
Q ss_pred HHHHHHHHHH---HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 6 IHGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 6 ~~~~ll~~l~---~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
.+..++..+. ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++++|..+
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE 169 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC
Confidence 3444555444 244678999999999999999999886 7899999999999999999987 3344579999999854
Q ss_pred HHHHHhhcccCCCceeEEEEeCCC-----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 83 VLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++ .++||+|+++... ..+..+++++.++|+|||.+++.
T Consensus 170 ~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 321 3689999986321 11345677778999999999984
No 105
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.9e-12 Score=98.28 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=87.5
Q ss_pred HHHHHHHHHHH-HHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 5 TIHGQLMAMLL-RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 5 ~~~~~ll~~l~-~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+.+..++..+. ... .+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|+..+++ .++.++.+|.++
T Consensus 94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~ 171 (280)
T COG2890 94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE 171 (280)
T ss_pred CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc
Confidence 45556666643 111 222799999999999999999987 78999999999999999999999998 567777776655
Q ss_pred HHHHHhhcccCCCceeEEEEeCC---Cc-------------------------ccHHHHHHHHhccCCCeEEEEeCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+ .++||+|++++. .+ .+..+++++...|+|||++++.-.
T Consensus 172 ~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 172 PL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 32 358999998741 01 123567777789999999998633
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.45 E-value=4.5e-13 Score=102.71 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=76.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++.. +.+++++|+++++++.++++.. ...++++|+.+. + + ..++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~f 104 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATF 104 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcE
Confidence 35679999999999998888763 5799999999999999988742 245778887553 1 1 24689
Q ss_pred eEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 98 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 98 D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
|+|++.. +..+....+.++.+.|+|||.+++..
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999874 33466788999999999999999864
No 107
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=1.4e-12 Score=97.01 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
+....++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++. .+++.++|+.+.. .
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~--------~ 102 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPF--------K 102 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCC--------C
Confidence 33455778999999999999999988765 7899999999999999988642 3667788876521 2
Q ss_pred CCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 94 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 94 ~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.++||+|++.... ......++++.+.+ ++++++.+...
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 5799999986532 23456778888876 45777766543
No 108
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.45 E-value=4.7e-12 Score=100.19 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=81.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..++.++.. +.+|+++|.++++++.|+++++.+++ ++++++++|+.+..... .+.|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~ 241 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP 241 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence 46789999999999999999984 57999999999999999999999888 46999999998765432 3579
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++|.........+...+..++|++++.++
T Consensus 242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred eEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 99999976555444444444557788777664
No 109
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=1.2e-12 Score=99.15 Aligned_cols=101 Identities=21% Similarity=0.346 Sum_probs=81.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|.++..++...+ ..+++++|+++++++.++++.. .++.++.+|..+.. + ..++|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~f 99 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSF 99 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCce
Confidence 3457999999999999999999876 7789999999999998887653 35788999986531 1 24789
Q ss_pred eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+|++... ..+....++++.++|+|||.+++...
T Consensus 100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99998752 23567789999999999999998643
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-12 Score=100.46 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 86 (187)
+.-|+..+...... +|||+|||.|..++.+++..| ..+++.+|.+..+++.+++|+..++..+. .++..|..+..
T Consensus 147 S~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-- 221 (300)
T COG2813 147 SRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-- 221 (300)
T ss_pred HHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc--
Confidence 44555565555444 999999999999999999987 89999999999999999999999887753 77888876543
Q ss_pred HhhcccCCCceeEEEEeCCC----ccc----HHHHHHHHhccCCCeEEEE
Q 029803 87 LLKYSENEGSFDYAFVDADK----DNY----CNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d~~~----~~~----~~~~~~~~~~L~~gG~lv~ 128 (187)
.++||+|++++.. .-. ..+++.+.+.|++||-|.+
T Consensus 222 -------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 222 -------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred -------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 2589999998632 112 3788889999999998766
No 111
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.45 E-value=6.8e-13 Score=96.94 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
+....++.. ++..++.++||+|||.|..++++|+. +..|+++|.++..++.+++..+..+++ ++....|..+..
T Consensus 17 ~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 17 PTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD 90 (192)
T ss_dssp ---HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS
T ss_pred CCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc
Confidence 334444443 56678899999999999999999986 789999999999999999988888875 888888875531
Q ss_pred HHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 85 DQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+ .+.||+|++.. ..+..+..++.+.+.++|||++++..
T Consensus 91 --~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 --F------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --c------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 1 36899998752 34556778899999999999988843
No 112
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=1.2e-12 Score=102.96 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=80.5
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++++|||||||+|+.+..++...+ ..|+++|+++.++..++..-.......++.+..++..+. +. ..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCC
Confidence 35678999999999999888887532 479999999998876543322223334678888887553 21 358
Q ss_pred eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
||+||+.+ +..+....++++.+.|+|||.+++......+
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 99999875 2345668999999999999999997655433
No 113
>PRK03612 spermidine synthase; Provisional
Probab=99.43 E-value=1.7e-12 Score=108.98 Aligned_cols=107 Identities=19% Similarity=0.320 Sum_probs=85.2
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH--HHhc---CC-CCcEEEEEcchHHHHHHHhhc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~~~~~~~d~~~~~~~~~~~ 90 (187)
..++++||+||||+|..+.++++. +...+++++|+++++++.++++ +... .. .++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 467899999999999999999875 4247999999999999999994 3321 12 258999999999877653
Q ss_pred ccCCCceeEEEEeCCCcc--------cHHHHHHHHhccCCCeEEEEeC
Q 029803 91 SENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 91 ~~~~~~~D~i~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|++|...+. ..++++.+.+.|+|||+++++.
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 478999999963221 2468899999999999999863
No 114
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=2.4e-12 Score=104.20 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...++.+|||||||+|..+..+++.. +.+|+++|+++++++.+++++. +. .+++..+|..+. .+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~ 227 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG 227 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC
Confidence 34577899999999999999999865 5799999999999999999874 22 377888886542 36
Q ss_pred ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+||.|++.. ...++..+++.+.++|+|||++++.....
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 899998653 23445788999999999999999976543
No 115
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.43 E-value=2.2e-13 Score=102.17 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=78.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-----cEEEEEcchHHHHHHHhhcccCCC
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
++|||+|||+|-.+..||+. +++|+++|.++++++.|+++.......+ ++++.+.++.+. .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999986 6799999999999999999944333322 255566665443 36
Q ss_pred ceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 96 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 96 ~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.||.|++.- +..+.+++++.+.++|+|||.+++....+
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 799999863 33456789999999999999999976543
No 116
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.43 E-value=2.7e-12 Score=96.36 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=85.3
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++. ...+++++.+|+.+.. + ..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~ 106 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNS 106 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCc
Confidence 4467899999999999999999988634799999999999999998875 3356889999987632 1 1468
Q ss_pred eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
||+|++.. ........++.+.++|+|||.+++.+..
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998763 3455677899999999999999886543
No 117
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=2e-12 Score=102.55 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
++.+|||||||+|..+..+++..+ ..+++++|+++++++.++++... .+++++.+|+.+. + + ..++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCcee
Confidence 567999999999999999988775 57999999999999999987642 3578899998653 1 1 246899
Q ss_pred EEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803 99 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 99 ~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|++... ..+....++++.+.|+|||.+++.
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9998642 234567899999999999998774
No 118
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.42 E-value=1.6e-11 Score=93.76 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=86.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC---CCcEEEEEcchHHHHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
..+|++||-||.|.|..+.++++..+ ..+++.+|++|..++.+++.+..... .++++++.+|+..++...
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------ 146 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------ 146 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence 44799999999999999999987643 67999999999999999999875332 378999999999988764
Q ss_pred CC-ceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEeC
Q 029803 94 EG-SFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 94 ~~-~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+ +||+|++|...+ ...++++.+.+.|+|||+++...
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 34 899999996431 24689999999999999999863
No 119
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.42 E-value=7.8e-12 Score=103.14 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=96.4
Q ss_pred HHHHHHHHHH--HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 6 IHGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 6 ~~~~ll~~l~--~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
....+...++ ...++.+|||+|++.|.-+..+|..+...+.+++.|+++..+...++++++.|+. ++.+.+.|+...
T Consensus 98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~ 176 (470)
T PRK11933 98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVF 176 (470)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhh
Confidence 3344444445 4568899999999999999999998876689999999999999999999999986 488999998765
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
...+ .+.||.|++|+..+. -..+++.++++|||||+||.+.+..
T Consensus 177 ~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 177 GAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3332 367999999964321 0357888889999999999987664
No 120
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.42 E-value=6.1e-12 Score=95.40 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
.+++.......++.+|||||||+|..+..+++. ..+++++|+++.+++.+++++...+. .+++..++..+....
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~- 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE- 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-
Confidence 345555555557789999999999999888874 46899999999999999999876654 477888887665422
Q ss_pred hhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 88 LKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
..++||+|++.. ...+....++.+.+.|+|||.+++...
T Consensus 111 -----~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 -----HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred -----cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 147899998863 233556788999999999999998643
No 121
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.41 E-value=5e-12 Score=94.57 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=87.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHHHHHHHHhcCCCCc--EEEEEcchHHHHHHHhhc
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKY 90 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~ 90 (187)
.+..++||++||||..+.-+.+..+. +.+|+.+|++|++++.++++..+.++... +.++.+|+.+. + +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F--- 173 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F--- 173 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C---
Confidence 35578999999999999999998863 28999999999999999999877777644 88999999764 2 2
Q ss_pred ccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 91 SENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 91 ~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+||...+.. +..+.+..++++++.|||||.+.+-
T Consensus 174 --dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 174 --DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred --CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 468999988875 4567788999999999999998763
No 122
>PTZ00146 fibrillarin; Provisional
Probab=99.40 E-value=3.6e-12 Score=98.48 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=77.8
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..+..+|||+|||+|+++..++....+.++|+++|+++++.+...+..... .++.++.+|+........ ..++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~----~~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRM----LVPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhc----ccCC
Confidence 567789999999999999999998866789999999987654444443321 358888899854211100 1357
Q ss_pred eeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|+||+|....+ ...++.++.+.|||||.+++.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 999999975433 334566788999999999983
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.40 E-value=1.5e-11 Score=90.69 Aligned_cols=125 Identities=21% Similarity=0.301 Sum_probs=96.5
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
.+||||||.|.+.+.+|...| +..++++|+....+..+.+++...++. ++.++++|+...+..+.. ++++|.|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheEE
Confidence 899999999999999999987 899999999999999999999988886 699999999988887743 48999998
Q ss_pred EeC---CCc--------ccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhc-CCCe
Q 029803 102 VDA---DKD--------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD-DPRV 169 (187)
Q Consensus 102 ~d~---~~~--------~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 169 (187)
+.. ++. ....+++.+.+.|+|||.|.+. ++ .....+.+.+.+.. ++.|
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~------------TD--------~~~y~~~~~~~~~~~~~~f 153 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA------------TD--------VEEYAEWMLEQFEESHPGF 153 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE------------ES---------HHHHHHHHHHHHHHSTTE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE------------eC--------CHHHHHHHHHHHHhcCcCe
Confidence 864 221 1367999999999999999773 11 22235555666666 5777
Q ss_pred EEE
Q 029803 170 QLS 172 (187)
Q Consensus 170 ~~~ 172 (187)
+..
T Consensus 154 ~~~ 156 (195)
T PF02390_consen 154 ENI 156 (195)
T ss_dssp EEE
T ss_pred EEc
Confidence 755
No 124
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.40 E-value=7.7e-12 Score=94.03 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=79.9
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||+|||+|..+..++.. +.+++++|++++++..|++++...+...++++.++|+.+. .++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence 346789999999999999999874 5699999999999999999998777656799999998653 268
Q ss_pred eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+|++... .......++++.+++++++++.+.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999986421 223456788888888888777764
No 125
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.40 E-value=2.7e-12 Score=99.57 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
++.+|||+|||+|+.+..++..++.. ..++++|+++.+++.|+++. .++++..+|+.+. + + ..++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCc
Confidence 45789999999999999998876532 47999999999999998753 2477888887653 1 1 2478
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+|+....+ ..++++.+.|+|||++++.
T Consensus 152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 152 LDAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 9999976543 2457788999999999874
No 126
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=3.8e-12 Score=90.67 Aligned_cols=107 Identities=25% Similarity=0.295 Sum_probs=77.6
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 6 IHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 6 ~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
....++..+.. ..++.+|||+|||.|.++..++.. +.+++++|+++.+++. . +.....-+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~ 73 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------R-NVVFDNFDAQDPP 73 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------T-TSEEEEEECHTHH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------h-hhhhhhhhhhhhh
Confidence 34456666664 578899999999999999989764 4599999999998887 1 1222222111111
Q ss_pred HHHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 85 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
. ..++||+|++... ..+...+++.+.++|+|||++++.+...
T Consensus 74 ~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 F-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp C-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred c-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1 1589999998853 3456789999999999999999977653
No 127
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.39 E-value=1.4e-11 Score=101.77 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=82.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..++.++.. ..+|+++|+++++++.|++|+..+++. +++++++|+.+.+.... ...++|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~---~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQP---WALGGF 368 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhh---hhcCCC
Confidence 45679999999999999999986 359999999999999999999988875 59999999987654311 013579
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++|.........++.+.+ +++++++.++
T Consensus 369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred CEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999999866656666765544 6888888775
No 128
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.38 E-value=2.3e-11 Score=90.87 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=73.2
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~ 94 (187)
..++.+|||||||+|.++..+++..++.++|+++|+++. .+. ..++++++|+.+. ++.+... ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence 356779999999999999999998765689999999881 122 2488999998663 2322111 124
Q ss_pred CceeEEEEeCCCc-------c-------cHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++||+|+++..+. + ....++.+.++|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 7899999975321 0 134678889999999999985
No 129
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.4e-11 Score=87.85 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=91.7
Q ss_pred HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
...+...+.. ...+.++||+.+|+|..+++.++.. ..+++.+|.+...+...++|++..++..+.+++..|+...++
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence 3455555555 3788899999999999999998874 469999999999999999999999988899999999997777
Q ss_pred HHhhcccCCCceeEEEEeCCCc--ccHHHHHHH----HhccCCCeEEEEe
Q 029803 86 QLLKYSENEGSFDYAFVDADKD--NYCNYHERL----MKLLKVGGIAVYD 129 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~----~~~L~~gG~lv~~ 129 (187)
.... .++||+||+|+... .+....... ..+|+|+|.++++
T Consensus 108 ~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 108 QLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred hcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 6521 23599999997543 221122222 2689999999996
No 130
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.37 E-value=1.5e-11 Score=96.79 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=79.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+..+++.+++..+++++|+|+++++.+++++......-++..+++|..+.++-.... ......
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence 568999999999999999999876457999999999999999998875332235778899987643322000 011333
Q ss_pred EEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 99 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 99 ~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+++++. .......+++++.+.|+|||.+++.-
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 445443 22345578999999999999998743
No 131
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.37 E-value=3.1e-11 Score=97.56 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=81.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..++.++.. ..+|+++|.++.+++.|++|++.+++. +++++.+|+.+.+... ..+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~ 301 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAP 301 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCC
Confidence 45689999999999999999863 569999999999999999999998875 6999999998776432 2469
Q ss_pred eEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++|+.... ....++.+. .++|++++.++
T Consensus 302 D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 302 ELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 99999976544 344555554 57898888774
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.36 E-value=4.5e-12 Score=94.77 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=75.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-----------CCCCcEEEEEcchHHHHHH
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------GVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~ 86 (187)
.++.+||++|||.|..++++|.. +..|+++|+++.+++.+.+..... ....+++++++|+.+.-..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 35679999999999999999975 789999999999999764321100 0123588999999775221
Q ss_pred HhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 87 LLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
. .++||.|+-.. .++....+++.+.++|+|||++++...
T Consensus 110 ~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 110 D------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred c------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 1 25688876332 233456689999999999998666433
No 133
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=1.2e-11 Score=103.09 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=80.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||||||+|..+..++.. ..+|+++|+++++++.+++.. +...+++++++|+.+....+ ..++
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~~~~ 103 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----SDGS 103 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----CCCC
Confidence 345679999999999999999986 359999999999998776532 22346899999985321111 2478
Q ss_pred eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
||+|++.... .....+++++.+.|+|||++++.+..+
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 9999987522 224678899999999999999977654
No 134
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.35 E-value=3.7e-11 Score=98.97 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=83.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..++.+++. ..+|+++|+++++++.|++|+..+++. +++++.+|+.+.++.+.. ...+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~---~~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPW---AGQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHh---cCCCC
Confidence 45679999999999999999986 358999999999999999999988875 699999999886655321 13579
Q ss_pred eEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803 98 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 98 D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++|..... ...+++.+. .++|++++.++
T Consensus 364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 99999976544 566666654 48898877663
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=93.54 Aligned_cols=121 Identities=16% Similarity=0.227 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHH------HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803 4 LTIHGQLMAMLLR------LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 77 (187)
Q Consensus 4 ~~~~~~ll~~l~~------~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 77 (187)
.+++.+++...+. ..++..+||+|||+|..++.++..++ .++++++|.++.++..|.+|+..+++.+++.+++
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 3556666655554 34666899999999999999999998 8999999999999999999999999999999885
Q ss_pred cch----HHHHHHHhhcccCCCceeEEEEeCC--------------------------Cc---ccHHHHHHHHhccCCCe
Q 029803 78 SEA----LSVLDQLLKYSENEGSFDYAFVDAD--------------------------KD---NYCNYHERLMKLLKVGG 124 (187)
Q Consensus 78 ~d~----~~~~~~~~~~~~~~~~~D~i~~d~~--------------------------~~---~~~~~~~~~~~~L~~gG 124 (187)
-+. .+..+. ..+++|+++++.. .+ .+..++..+-++|+|||
T Consensus 206 ~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 206 NIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred ccccccccccccc------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 433 322221 1478999987631 01 11234555569999999
Q ss_pred EEEEeCC
Q 029803 125 IAVYDNT 131 (187)
Q Consensus 125 ~lv~~~~ 131 (187)
.+.++-.
T Consensus 280 ~~~le~~ 286 (328)
T KOG2904|consen 280 FEQLELV 286 (328)
T ss_pred eEEEEec
Confidence 9999644
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.34 E-value=4.4e-11 Score=90.05 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=82.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+.. ++++..+|+.+.... ..++||
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~------~~~~~D 114 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK------GAKSFD 114 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC------CCCCcc
Confidence 4789999999999999988875 357999999999999999998876543 588888888765322 136899
Q ss_pred EEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 99 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 99 ~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+|++.. ...+...+++++.+.|++||.+++...
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999863 334567789999999999999988643
No 137
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.33 E-value=3.9e-11 Score=90.63 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=74.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++...+..+++++..+|... . .++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~------~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----L------LGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----c------cCCc
Confidence 56789999999999999999875 457999999999999999999887776679999998321 1 3689
Q ss_pred eEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|++... .+.....++.+.+++++++++.+
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99987532 12334566777676665555544
No 138
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.33 E-value=8.6e-12 Score=90.62 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=79.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~ 95 (187)
....+||+|||+|..- +.++ +..+|+++|+++.|-+.+.+.+...... +++ +++++..+. +++ .+.
T Consensus 76 ~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l-~~l-----~d~ 144 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENL-PQL-----ADG 144 (252)
T ss_pred CccceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcC-ccc-----ccC
Confidence 3446899999999773 3333 5899999999999999999998876544 455 888887654 443 268
Q ss_pred ceeEEEEe---CCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+||.|++. +..++....+++..++|+|||.+++-
T Consensus 145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999765 45678888999999999999999884
No 139
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.32 E-value=1e-11 Score=91.02 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=107.2
Q ss_pred CcHHHHHHHHHHHHHcC-CCE-EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 3 LLTIHGQLMAMLLRLVN-AKK-TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~-~~~-vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
..++...++..|.+..+ ..+ |||||||+|.-+.++|..+| ..+-...|++++.....+.++...++++-...+.-|+
T Consensus 7 aeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 7 AERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 45667777777777543 344 99999999999999999998 7888889999999888999988888765444455555
Q ss_pred HHHHHHHh-hcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHH
Q 029803 81 LSVLDQLL-KYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQ 154 (187)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (187)
.+..-... ......++||.||+.. ..+....+|+.+.++|++||.+++...+..+....++
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~------------- 152 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE------------- 152 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc-------------
Confidence 43211110 0001246899999752 3345677899999999999999998887654333322
Q ss_pred HHHHHHHHhhc-CCCe
Q 029803 155 AILDLNRSLAD-DPRV 169 (187)
Q Consensus 155 ~~~~~~~~l~~-~~~~ 169 (187)
.-++|..+|+. +|.+
T Consensus 153 SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 153 SNAAFDASLRSRDPEW 168 (204)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 14677777774 4544
No 140
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.32 E-value=1.6e-11 Score=92.21 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=74.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-----------CCCCcEEEEEcchHHHHHH
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------GVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~ 86 (187)
.++.+||++|||.|..++++|.. +.+|+++|+++.+++.+.+..... ....++++.++|+.+..+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 35579999999999999999974 789999999999999764321100 0134688999999875322
Q ss_pred HhhcccCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803 87 LLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
. ...||+|+-. ..++....+++.+.++|+|||++++
T Consensus 113 ~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 D------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred c------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 1 2578988732 2344556789999999999986443
No 141
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.31 E-value=6.7e-11 Score=88.88 Aligned_cols=102 Identities=24% Similarity=0.372 Sum_probs=88.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
..+||||||.|.+.+.+|...| +..++|||+....+..+.+.+...++. ++.++++|+.+.+..+. .+++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEE
Confidence 5899999999999999999987 789999999999999999999999986 79999999999988874 23588888
Q ss_pred EEe---CCCc--------ccHHHHHHHHhccCCCeEEEE
Q 029803 101 FVD---ADKD--------NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 101 ~~d---~~~~--------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++. +++. -...+++.+.+.|+|||.|.+
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 775 3322 146789999999999999988
No 142
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.31 E-value=1.4e-11 Score=90.89 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=78.6
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++..|+|..||.|.+++.+|+..+ ..+|+++|++|.+++..++|++.+++.+++..+++|+.++.+ ...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence 46788999999999999999998544 679999999999999999999999999999999999988765 278
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+|-|+++. +.....++..+..++++||++.+
T Consensus 170 ~drvim~l-p~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 170 FDRVIMNL-PESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEEEE---TSSGGGGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECC-hHHHHHHHHHHHHHhcCCcEEEC
Confidence 99999975 44455788999999999998863
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=3.1e-11 Score=87.25 Aligned_cols=108 Identities=11% Similarity=-0.019 Sum_probs=80.9
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...++.+|||||||+|..+..+++. ..+++++|+++.+++.+++++.. ..+++++++|+.+.... ..
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~ 76 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KL 76 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------cc
Confidence 3456679999999999999999986 46999999999999999998854 24799999999875211 24
Q ss_pred ceeEEEEeCCCcccHHHHHHHHh--ccCCCeEEEEeCCCCCcc
Q 029803 96 SFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGT 136 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~~~ 136 (187)
+||.|+.+.........+..+.+ .+.++|+++++.-.....
T Consensus 77 ~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl 119 (169)
T smart00650 77 QPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRL 119 (169)
T ss_pred CCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHh
Confidence 69999988654444556666654 345889998875544333
No 144
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=5e-11 Score=87.62 Aligned_cols=106 Identities=14% Similarity=0.205 Sum_probs=74.4
Q ss_pred HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHh
Q 029803 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLL 88 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 88 (187)
.+.+....++.+|||+|||+|..+..++....+.++++++|+++.+ .. .+++++++|+.+. +..+.
T Consensus 24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHH
Confidence 3334445788899999999999999998877546799999999864 11 2477887786432 11111
Q ss_pred hcccCCCceeEEEEeCCCc-------c-------cHHHHHHHHhccCCCeEEEEe
Q 029803 89 KYSENEGSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.. ...++||+|++++... . ....++.+.+.|+|||.+++.
T Consensus 92 ~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 92 ER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 00 1246899999975311 1 246788899999999999985
No 145
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.28 E-value=1.4e-10 Score=93.83 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=84.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
..+|||++||+|..++.++...+ ..+|+++|+++++++.+++|++.+++. +++++++|+...+.. .++||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence 36899999999999999988754 468999999999999999999988876 477999999876542 257999
Q ss_pred EEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 100 AFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|++|+. .....+++.+++.+++||++.+.
T Consensus 129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 999974 34467888888899999999986
No 146
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.28 E-value=2.9e-11 Score=88.78 Aligned_cols=163 Identities=16% Similarity=0.220 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
.|.---.++.++-..+|+.|+|+|...|.+++++|+.+ ...++|+++|++..... ++.++..++.+++++++||+
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence 44555667788888899999999999999999987644 34789999999654332 22233345567999999998
Q ss_pred HH--HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHH
Q 029803 81 LS--VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI 156 (187)
Q Consensus 81 ~~--~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (187)
.+ .+...... .......+|+.|++ +.+....++...+++++|+++|+.|+............ +..++-..-.
T Consensus 95 ~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~---~~w~~g~~p~ 170 (206)
T PF04989_consen 95 IDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPD---RPWGPGNNPK 170 (206)
T ss_dssp SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------------H
T ss_pred CCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccc---cchhhhhHHH
Confidence 65 23332111 01245668888875 45677888889999999999999988764443331110 0000011126
Q ss_pred HHHHHHhhcCCCeEEE
Q 029803 157 LDLNRSLADDPRVQLS 172 (187)
Q Consensus 157 ~~~~~~l~~~~~~~~~ 172 (187)
++..++++.+++|+.-
T Consensus 171 ~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 171 TAVKEFLAEHPDFEID 186 (206)
T ss_dssp HHHHHHHHTTTTEEEE
T ss_pred HHHHHHHHHCCCcEec
Confidence 6777788889986643
No 147
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.2e-10 Score=91.88 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=98.9
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
++....++...++.-.++.+|||.+++-|.=|..+|..... +..|+++|.++..+...++|+++.|+.+ +.+++.|+.
T Consensus 140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~ 218 (355)
T COG0144 140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDAR 218 (355)
T ss_pred EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccc
Confidence 34556677777888889999999999999999999998863 3566999999999999999999999886 888888875
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
....... ..++||.|++|+..+. -..+++.++++|||||.|+.+.+..
T Consensus 219 ~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 219 RLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 5433321 1236999999953211 1357888889999999999987764
No 148
>PRK00536 speE spermidine synthase; Provisional
Probab=99.28 E-value=1.1e-10 Score=89.34 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=79.2
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
..+|++||-||.|.|..+.+++++ + .+|+.+|++++.++.+++.+.... + .+|++++.. +... .
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~-----~ 136 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL-----D 136 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----c
Confidence 568999999999999999999997 3 399999999999999999766422 2 367888761 1111 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|++|.. ....+++.+.+.|+|||+++...
T Consensus 137 ~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 368999999953 34688899999999999999863
No 149
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.27 E-value=1.2e-10 Score=75.97 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=77.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
+++|+|||.|..+..++. . ...+++++|++++.+..+++...... ..+++++.+|..+.... ..++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEE
Confidence 489999999999998887 2 36899999999999998886443333 35689999998876431 147899999
Q ss_pred EeCCC----cccHHHHHHHHhccCCCeEEEEe
Q 029803 102 VDADK----DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 102 ~d~~~----~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++... .....+++.+.+.++++|.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98643 34567889999999999999875
No 150
>PRK06202 hypothetical protein; Provisional
Probab=99.25 E-value=2.8e-11 Score=91.80 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
+++.......++.+|||+|||+|..+..++...+ ++.+++++|+++++++.++++.... ++++...++... +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~ 124 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-V 124 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-c
Confidence 3333333445678999999999999988876432 2469999999999999999876433 244544444322 1
Q ss_pred HHhhcccCCCceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 86 QLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
. .+++||+|++...-. ....+++++.++++ |.+++.+...
T Consensus 125 ~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 125 A------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred c------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 1 147899999874221 23468888888887 5666666554
No 151
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=2.2e-11 Score=93.98 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=74.6
Q ss_pred CCCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCcchHHHHHHHHHh----cC------------------
Q 029803 19 NAKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK----AG------------------ 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~----~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~----~~------------------ 68 (187)
++.+|+++|||+|. .+..+++..+. +.+|+++|+++++++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 34445554432 47899999999999999985310 01
Q ss_pred ----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803 69 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 69 ----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+..++++.+.|..+... ..++||+|++... .+.....++++.+.|+|||++++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 11357788888765321 1478999998531 234457899999999999999984
No 152
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.25 E-value=1.2e-11 Score=91.25 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
-+++||+|||||-.+..+-.. ..+++++|+|+.|+++|.++ ++ .-++.+.++..+++.. ..++||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~~~-----~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLEDL-----TQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhhhc-----cCCcccc
Confidence 579999999999998888765 35999999999999998876 21 2346667776665532 3689999
Q ss_pred EEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCCcc---ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEe
Q 029803 100 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT---VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH 173 (187)
Q Consensus 100 i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (187)
|...- .-.....++--+..+|+|||.+.|+--...+. +..|. .+... -+.+....-...++++.-
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps---~RyAH------~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPS---QRYAH------SESYVRALLAASGLEVIA 262 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchh---hhhcc------chHHHHHHHHhcCceEEE
Confidence 97532 12234456666779999999999854322221 11111 11111 234444444455665444
Q ss_pred e-----------ecCCceEEEEEc
Q 029803 174 V-----------ALGDGITICRRI 186 (187)
Q Consensus 174 l-----------p~~~G~~~~~~~ 186 (187)
+ |+..++.|++|+
T Consensus 263 ~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 263 IEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred eecccchhhcCCCCCCceEEEecC
Confidence 3 778888888886
No 153
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5.3e-11 Score=89.81 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
.++-+.++..++.+|+|-|+|+|..+.++++...+.++++++|.....++.|.+.++..++.+++++.+.|.+..--..
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~- 173 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI- 173 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-
Confidence 3555666888999999999999999999999998899999999999999999999999999999999999987631111
Q ss_pred hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCe-EEEE
Q 029803 89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG-IAVY 128 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG-~lv~ 128 (187)
....+|.||+|. +.....+..+++.||.+| ++|.
T Consensus 174 ----ks~~aDaVFLDl--PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 174 ----KSLKADAVFLDL--PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ----cccccceEEEcC--CChhhhhhhhHHHhhhcCceEEe
Confidence 147899999995 344456677777888877 4443
No 154
>PRK05785 hypothetical protein; Provisional
Probab=99.24 E-value=7.8e-11 Score=89.01 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=72.9
Q ss_pred HHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 10 ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
++..+... .++.+|||+|||+|..+..+++.. +.+|+++|++++|++.++++. ..+++|+.+. +
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~l-p--- 105 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEAL-P--- 105 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhC-C---
Confidence 34444332 357899999999999999998764 469999999999999988641 2467777543 2
Q ss_pred hcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCe
Q 029803 89 KYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGG 124 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG 124 (187)
..+++||+|++.. +..+....++++.+.|+|..
T Consensus 106 ---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 ---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 1358999999864 34566788999999999953
No 155
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.24 E-value=4.5e-10 Score=90.46 Aligned_cols=121 Identities=15% Similarity=0.109 Sum_probs=85.5
Q ss_pred CCcHHHHHHHH-HHHHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803 2 LLLTIHGQLMA-MLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 78 (187)
Q Consensus 2 ~~~~~~~~ll~-~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 78 (187)
++++...+.|. .+....+ +.++||++||+|..++.+++.. .+|+++|.++.+++.+++|+..+++. +++++.+
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~ 261 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRM 261 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEC
Confidence 44555444444 3333332 3579999999999999888863 49999999999999999999988875 6999999
Q ss_pred chHHHHHHHhhccc---------CCCceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803 79 EALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 79 d~~~~~~~~~~~~~---------~~~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+.+.++.+..... ...+||+||+|+.... ....++.+.+ +++++.++
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 99888765422100 0125899999986544 3445555543 67776663
No 156
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.23 E-value=1.4e-10 Score=89.52 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=78.8
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++++|||||||.|+.+..++..- ...|+++|+++......+..-.-.+....+..... ..+.++. .+.
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp~-------~~~ 182 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLPN-------LGA 182 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhccc-------cCC
Confidence 4578999999999999999998763 35799999998776554433222333333333322 2333333 378
Q ss_pred eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCCcc
Q 029803 97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT 136 (187)
Q Consensus 97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
||.||+-+ +..+....++++...|++||.++++.....|.
T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 99999876 45667788999999999999999987776554
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=86.23 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=82.0
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
-.++.+|||.++|-||+++..++. ++ +|+++|.+|..++.|+-|==..++ ...++++.||+.+..+.+ .+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D 203 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DD 203 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cc
Confidence 346789999999999999988875 55 999999999999888755211111 135799999999998886 46
Q ss_pred CceeEEEEeCCC------cccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++||+|+.|... -...+++++++++|+|||.++-
T Consensus 204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 799999998632 1235789999999999999864
No 158
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.22 E-value=2e-10 Score=82.01 Aligned_cols=106 Identities=24% Similarity=0.393 Sum_probs=81.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
+.+|||+|||.|.....+++.-- ...++++|.++.+++.|+...+..+.++.+++.+.|+.+. .+ ..++||+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~-----~~~qfdl 139 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF-----LSGQFDL 139 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc-----cccceeE
Confidence 44999999999999999987542 3569999999999999999999999998899999998763 21 2467887
Q ss_pred EE----Ee-----CC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 100 AF----VD-----AD--KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 100 i~----~d-----~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|. .| +. .....-++..+.++|+|||++++..+.|
T Consensus 140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 74 11 11 1122346777789999999999976665
No 159
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.22 E-value=4e-10 Score=90.75 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=86.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
.+|||..||+|..++.+++..+...+|+++|+++++++.+++|++.++.. +++++++|+...+... ..+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence 48999999999999999987532468999999999999999999988765 5899999999887653 3679999
Q ss_pred EEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 101 FVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++|+ ......+++.+.+.++++|+|.+.
T Consensus 119 dlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 9998 444568999999999999999986
No 160
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=2.5e-10 Score=101.67 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC-----------
Q 029803 5 TIHGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------- 69 (187)
Q Consensus 5 ~~~~~ll~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------- 69 (187)
+.+..++..+.... ++.+|||+|||+|..++.++...+ ..+++++|+++++++.|++|+..+++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 45556666533221 346899999999999999999876 67999999999999999999987643
Q ss_pred ----CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC----------------C---------------------cc
Q 029803 70 ----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----------------K---------------------DN 108 (187)
Q Consensus 70 ----~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~----------------~---------------------~~ 108 (187)
.++++++++|..+.+... ..+||+|+.+.. + .+
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 247999999998754321 237999987631 0 00
Q ss_pred ----cHHHHHHHHhccCCCeEEEEeCC
Q 029803 109 ----YCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 109 ----~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|..+++++.+.|+|||.+++.-.
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 13456666789999999998633
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.21 E-value=2.1e-10 Score=83.18 Aligned_cols=108 Identities=23% Similarity=0.301 Sum_probs=71.6
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--CCCcEEEEEcchHHHH-HHHhhccc
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~~~ 92 (187)
...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++ ...++++...+-.+.. +...
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---- 115 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---- 115 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence 466889999999999999999998754 67999999988 9999999999876 4566777766543321 2221
Q ss_pred CCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+||+|+..- ..+.+..+++.+..+|+++|.+++.
T Consensus 116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 236899998652 4566778888888999999886664
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.19 E-value=1e-09 Score=85.86 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
++.+...+...+...++.+|||||||+|..+..++.. ..+++++|+++++++.+++++...+...+++++++|+.+.
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 3444444444555667789999999999999999875 4589999999999999999998776556799999999774
Q ss_pred HHHHhhcccCCCceeEEEEeCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
. ...||.|+.+...
T Consensus 98 ~---------~~~~d~VvaNlPY 111 (294)
T PTZ00338 98 E---------FPYFDVCVANVPY 111 (294)
T ss_pred c---------ccccCEEEecCCc
Confidence 1 2578998887543
No 163
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.19 E-value=1.4e-09 Score=87.32 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=85.0
Q ss_pred CCcHHHHHHHH-HHHHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803 2 LLLTIHGQLMA-MLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 78 (187)
Q Consensus 2 ~~~~~~~~ll~-~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 78 (187)
++++...+.|. .+....+ +.++||+|||+|..++.+++.. .+|+++|.++++++.+++|+..+++. +++++.+
T Consensus 177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~ 252 (353)
T TIGR02143 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRM 252 (353)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEc
Confidence 34444443333 4444332 4579999999999999998864 48999999999999999999998875 5999999
Q ss_pred chHHHHHHHhhc-------c--cCCCceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803 79 EALSVLDQLLKY-------S--ENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 79 d~~~~~~~~~~~-------~--~~~~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+.+.++..... + .....||+||+|+.... ....++.+.+ +++++.++
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 998877642110 0 00124899999986544 3455555544 67777764
No 164
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.18 E-value=8.6e-11 Score=83.64 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=59.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
+.|+|+.||.|..++.+|+.. .+|+++|++|..++.++.|++.+|+.++++++++|..+.++.+.. ...+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 469999999999999999974 499999999999999999999999999999999999997665421 1228999
Q ss_pred EEeC
Q 029803 101 FVDA 104 (187)
Q Consensus 101 ~~d~ 104 (187)
|+++
T Consensus 74 FlSP 77 (163)
T PF09445_consen 74 FLSP 77 (163)
T ss_dssp EE--
T ss_pred EECC
Confidence 9985
No 165
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=8e-10 Score=90.46 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803 2 LLLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 77 (187)
Q Consensus 2 ~~~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 77 (187)
+.++.+.+-|...+. ..+.++++|+.||.|.+++.+|.. ..+|+++|+++++++.|++|++.++..+ +++..
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~ 347 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIA 347 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEe
Confidence 445555555554443 446689999999999999999964 5699999999999999999999999886 99999
Q ss_pred cchHHHHHHHhhcccCCCceeEEEEeCCCcccH-HHHHHHHhccCCCeEEEEe
Q 029803 78 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~ 129 (187)
+++.++.+... ....+|.|++|+...... .+++.+ ..++|..++-++
T Consensus 348 ~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 348 GDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred CCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 99999877652 235899999998766665 455544 666777666653
No 166
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.1e-10 Score=83.66 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=85.9
Q ss_pred HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCC---------CCcEEE
Q 029803 7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGV---------DHKINF 75 (187)
Q Consensus 7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~ 75 (187)
.+.++..|-. ..++.+.||+|+|+|+.+..++..+...+. .++||.-++.++.+++|+.+.-. ..+..+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 4555665553 667789999999999999999976654444 59999999999999999886441 145778
Q ss_pred EEcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 76 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+.||.....+. ..+||.|++.+..+. .-+.+...|++||.+++-
T Consensus 149 vvGDgr~g~~e-------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 149 VVGDGRKGYAE-------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EeCCccccCCc-------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence 89998775543 589999999865544 344566788999988873
No 167
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=4.6e-10 Score=88.64 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=94.6
Q ss_pred HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803 12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 91 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (187)
+..-....+.+|+|..+|.|.+++.+|..-. .+|+++|++|.+++..++|++.+++.+.+..++||+.+..+.+
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---- 254 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---- 254 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc----
Confidence 3333455699999999999999999998743 3499999999999999999999999988999999999987653
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+.+|-|++.. +.....++..+.+.+++||++.++....
T Consensus 255 ---~~aDrIim~~-p~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 255 ---GVADRIIMGL-PKSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred ---ccCCEEEeCC-CCcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 7899999964 4455678888999999999999987664
No 168
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.15 E-value=5.3e-10 Score=81.50 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCC---------EEEEEeCCcchHHHHHHHHHhcCCCCc
Q 029803 2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------QITAIDVNRETYEIGLPIIKKAGVDHK 72 (187)
Q Consensus 2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~---------~v~~iD~~~~~~~~a~~~~~~~~~~~~ 72 (187)
+..+..+..|-.++...++..+||-.||+|...++.+.... +. ++++.|+++++++.+++|++.+++...
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 45678888888998888889999999999999988876654 33 389999999999999999999999888
Q ss_pred EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----------cccHHHHHHHHhccCCCeEEEEe
Q 029803 73 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+.+.+.|+.+.- + ..+++|.|++|... .-|..+++.+.+.+++..++++.
T Consensus 90 i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 90 IDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred eEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999997753 1 14789999999632 22456778888899996666663
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.15 E-value=2.7e-09 Score=84.17 Aligned_cols=82 Identities=13% Similarity=0.258 Sum_probs=65.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEE-cchHHHHHHHhhcccCCCc
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~ 96 (187)
+..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++.. .+..+.+..+.. ..++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence 457899999999988888877665 789999999999999999999998 7888898864 444444433211 1468
Q ss_pred eeEEEEeC
Q 029803 97 FDYAFVDA 104 (187)
Q Consensus 97 ~D~i~~d~ 104 (187)
||+|++..
T Consensus 190 fDlivcNP 197 (321)
T PRK11727 190 FDATLCNP 197 (321)
T ss_pred eEEEEeCC
Confidence 99999985
No 170
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.14 E-value=1.3e-09 Score=85.98 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=69.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC----CCcEEEEEcchHHHHHHHhhcccCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++..... ..++++..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 5679999999999999999974 57999999999999999999876421 13577888886432 3
Q ss_pred CceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++||+|++..... .....++.+.+ +.++++++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 7899998653211 12234555544 456666654
No 171
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=3.2e-10 Score=84.35 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=79.5
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-CCC------------------------
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-VDH------------------------ 71 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~~~------------------------ 71 (187)
...++.+|||||.+|..++.+|+.+. ...+.|+|+++..+..|+++++... ...
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 45788999999999999999999987 6789999999999999999875321 000
Q ss_pred ---------cEEE----EEcchHHHHHHHhhcccCCCceeEEEEe---------CCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 72 ---------KINF----IESEALSVLDQLLKYSENEGSFDYAFVD---------ADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 72 ---------~~~~----~~~d~~~~~~~~~~~~~~~~~~D~i~~d---------~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++.+ +..+..+++.. ..+.||.|+|- ...+....++..++++|.|||++|+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111 11122233311 24789999753 23455788999999999999999996
Q ss_pred CCCC
Q 029803 130 NTLW 133 (187)
Q Consensus 130 ~~~~ 133 (187)
---|
T Consensus 209 PQpW 212 (288)
T KOG2899|consen 209 PQPW 212 (288)
T ss_pred CCch
Confidence 5444
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.3e-09 Score=74.38 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=69.9
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
...+++|+|+|||||..++..+..- ..+|+++|+++++++.+++|.++ +..+++++.+|+.++ ..+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~----------~~~ 108 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF----------RGK 108 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc----------CCc
Confidence 3467789999999999998777653 47999999999999999999988 345799999999775 578
Q ss_pred eeEEEEeCCC-----cccHHHHHHHHhcc
Q 029803 97 FDYAFVDADK-----DNYCNYHERLMKLL 120 (187)
Q Consensus 97 ~D~i~~d~~~-----~~~~~~~~~~~~~L 120 (187)
+|.+++++.. ..-..++..+++..
T Consensus 109 ~dtvimNPPFG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 109 FDTVIMNPPFGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred cceEEECCCCccccccCCHHHHHHHHHhh
Confidence 9989888531 12244566565554
No 173
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=1.8e-10 Score=85.02 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
+..+.||+|+|.|..|..++... -.+|..+|+.+..++.|++.+... .....++++....++.|. ..+||
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT-EE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CCcEe
Confidence 45689999999999998776544 469999999999999999876541 123466788887776554 47999
Q ss_pred EEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCC-CCCcc-ccCCCCC
Q 029803 99 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT-LWGGT-VAVPEEQ 143 (187)
Q Consensus 99 ~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~-~~~~~-~~~~~~~ 143 (187)
+|++.-. ..+...++++|.+.|+|+|+|++.+. ...+. +.++.+.
T Consensus 125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds 176 (218)
T PF05891_consen 125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS 176 (218)
T ss_dssp EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence 9999742 34567799999999999999999544 34443 4444433
No 174
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.12 E-value=3.1e-10 Score=85.08 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-cC----------CCCc
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG----------VDHK 72 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~----------~~~~ 72 (187)
+|...+++.. ....++.+||..|||.|....+||.. +.+|+++|+++.+++.+.+.... .. -..+
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 3444455554 23456679999999999999999985 67999999999999887432111 00 1235
Q ss_pred EEEEEcchHHHHHHHhhcccCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803 73 INFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++++++|.++.-+.. .++||+|+=. ..+.....+.+++.++|+|||.+++
T Consensus 99 i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 99 ITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 799999998753321 2579999733 2456677899999999999999444
No 175
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.12 E-value=6.9e-09 Score=80.90 Aligned_cols=123 Identities=24% Similarity=0.253 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
.....+...++...++.+|||++++.|.=+..++..+...+.+++.|++++.+...++++.+.|..+ +.+...|+....
T Consensus 71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~ 149 (283)
T PF01189_consen 71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLD 149 (283)
T ss_dssp HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHH
T ss_pred ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecccccc
Confidence 3445566666777788899999999999999999998767999999999999999999999999864 777778887765
Q ss_pred HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhcc----CCCeEEEEeCCCC
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLL----KVGGIAVYDNTLW 133 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L----~~gG~lv~~~~~~ 133 (187)
+... ...||.|++|+..+. -...++++++.+ +|||+++......
T Consensus 150 ~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 150 PKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 5432 346999999953211 024788888999 9999999976553
No 176
>PHA03412 putative methyltransferase; Provisional
Probab=99.12 E-value=2e-09 Score=80.80 Aligned_cols=99 Identities=15% Similarity=0.268 Sum_probs=73.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..+.+|||+|||+|..++.++...+ +..+|+++|+++.+++.|++++. ++.++++|+.... + .+
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~ 113 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DT 113 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cC
Confidence 3567999999999999999987643 25699999999999999998752 4788888886531 1 36
Q ss_pred ceeEEEEeCCC-----cc----------cHHHHHHHHhccCCCeEEEEeC
Q 029803 96 SFDYAFVDADK-----DN----------YCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 96 ~~D~i~~d~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+||+|++++.. .+ ...+++.+.+++++|+.|+-..
T Consensus 114 ~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 114 LFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 89999987421 11 2346777888888877644333
No 177
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=8.2e-10 Score=84.71 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=71.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
....+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++ .+++++++|+.+... ..+|
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kF 127 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKF 127 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCC
Confidence 3457999999999999988887654 579999999999999998864 258899999987532 3689
Q ss_pred eEEEEeCCCc-----c------c------------HHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKD-----N------Y------------CNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~-----~------~------------~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+++.... . + ..++.....+|+|+|.+.+
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 9999974211 0 1 2344444578889986655
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.09 E-value=1.4e-09 Score=79.44 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=81.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
+++|||+|.|..++.+|-..| +.+++.+|.........+..+...++. +++++++++.+ .. ...+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence 799999999999999999887 899999999999999999999999997 59999999987 11 258999999
Q ss_pred EeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 102 VDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+-+- .....+++.+.+++++||.+++
T Consensus 121 aRAv-~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 121 ARAV-APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EESS-SSHHHHHHHHGGGEEEEEEEEE
T ss_pred eehh-cCHHHHHHHHHHhcCCCCEEEE
Confidence 9763 3667888999999999999987
No 179
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.08 E-value=6e-10 Score=87.55 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-ch
Q 029803 2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA 80 (187)
Q Consensus 2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~ 80 (187)
+.+|..+..+..|++..++..|||--||||...+..... +++++++|++..++.-++.|++..++.+ ..+... |+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da 255 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA 255 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence 467899999999999999999999999999999887764 7899999999999999999999988765 544444 87
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEe
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
... + + ..+++|.|..|... +-+.++++.+.+.|++||++++-
T Consensus 256 ~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 256 TNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred ccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 653 2 2 23479999999531 12567889999999999999884
No 180
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=1.7e-10 Score=85.80 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCc
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGS 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~ 96 (187)
+.+|||||||.|.+...+.+..+ + .+++++|.+|.+++..+++..-.. .++.....|.... +.. ..+.++
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~-n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~----~~~~~s 144 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSP-NNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKE----PPEEGS 144 (264)
T ss_pred hhhheeeccCCCcccchhhhcCC-CCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccC----CCCcCc
Confidence 34799999999999999998776 5 789999999999999998754322 4555555555332 111 134578
Q ss_pred eeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 97 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 97 ~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+|.|.+- -.+......++++.++|||||.|++-|.-.
T Consensus 145 vD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 145 VDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 8877433 256677889999999999999999977643
No 181
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.07 E-value=2.2e-09 Score=80.64 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=79.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-----------cCCCCcEEEEEcchHHHHHHH
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-----------AGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~ 87 (187)
++.+||..|||.|....+||.. +.+|+++|+++.+++.+.+.... ......++++++|.++.-+.-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4579999999999999999985 77999999999999987652100 011246899999998752110
Q ss_pred hhcccCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803 88 LKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 134 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
...++||+|+-. ..+.....+.+.+.++|+|||.+++-.....
T Consensus 120 ----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 120 ----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 012579998643 2445567899999999999998887544333
No 182
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.07 E-value=3.4e-10 Score=86.29 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=81.6
Q ss_pred HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
......+.++|+|||+|.|..+..+++.+| +.+++.+|. |+.++.+++ .++++++.+|.++. +
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~----- 156 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---L----- 156 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---C-----
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhh---h-----
Confidence 333455778999999999999999999998 899999998 888888887 56899999999742 2
Q ss_pred CCCceeEEEEeC-----CCcccHHHHHHHHhccCCC--eEEEEeCCCCCc
Q 029803 93 NEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVG--GIAVYDNTLWGG 135 (187)
Q Consensus 93 ~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~~ 135 (187)
+. +|++++.. ..+....+++++.+.|+|| |.|++.+.+.+.
T Consensus 157 -P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 157 -PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp -SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred -cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 24 99999864 2344567899999999998 999998877533
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.06 E-value=3.4e-09 Score=74.75 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
..++..++.+...+.-..+.-|||+|.|+|..+..+++..-+...++++|.+++......+.+. -++++.||+.
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~ 104 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAF 104 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccccchh
Confidence 4567778888888888888999999999999999998877667899999999999988887753 3669999998
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEE
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.-..+... .+..||.|++.... ....+.++.+...|..||.++-
T Consensus 105 ~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 105 DLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 753333211 35689999987532 2345688999999999998875
No 184
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=1.5e-09 Score=78.76 Aligned_cols=99 Identities=12% Similarity=0.212 Sum_probs=73.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+|||+|||.|....++... .+.+.+++|++++.+..+.++ -+.++++|+.+.+..+ .+++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f-----~d~s 75 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADF-----PDQS 75 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhC-----CCCC
Confidence 356789999999999998888774 378999999999877766544 3779999999888776 4789
Q ss_pred eeEEEEeCCCc---ccHHHHHHHHhccCCCeEEEEeCC
Q 029803 97 FDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 97 ~D~i~~d~~~~---~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
||.|++...-+ .....++++++.-+ .+++.|.|.
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 99999975433 33445666655433 356666554
No 185
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.04 E-value=3.2e-09 Score=78.86 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=83.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc-ee
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~D 98 (187)
+++++|||+|.|..++.+|-..| +.+++-+|.....+...+......++. +++++++.+.++.+. .. ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence 68999999999999999997766 778999999999999999999999986 599999999886433 23 99
Q ss_pred EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+|.+-+ ........+.+.+++++||.+++
T Consensus 138 ~vtsRA-va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 138 VVTSRA-VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEEeeh-ccchHHHHHHHHHhcccCCcchh
Confidence 998865 44667788999999999998765
No 186
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.04 E-value=5.9e-09 Score=80.34 Aligned_cols=88 Identities=16% Similarity=0.052 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+++.+...+...+...++.+|||||||+|..+..+++. ..+++++|+++.+++.+++++.. ..+++++++|+.+
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence 34555555666666677889999999999999999986 35899999999999999988754 2479999999876
Q ss_pred HHHHHhhcccCCCceeEEEEeCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD 105 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~ 105 (187)
.- ...||.|+....
T Consensus 87 ~~---------~~~~d~Vv~NlP 100 (258)
T PRK14896 87 VD---------LPEFNKVVSNLP 100 (258)
T ss_pred CC---------chhceEEEEcCC
Confidence 31 145898888754
No 187
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.03 E-value=6.5e-09 Score=79.68 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HH
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LD 85 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~ 85 (187)
+-+..|....+|-+||||.||.|...+......+. ..+|...|.++..++..++.++..++.+.++|.++|+++. +.
T Consensus 125 ~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~ 204 (311)
T PF12147_consen 125 QAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA 204 (311)
T ss_pred HHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh
Confidence 33444444568899999999999998888887774 3689999999999999999999999998789999999874 33
Q ss_pred HHhhcccCCCceeEEEEeCCCc------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 86 QLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~------~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
.+ ...++++++.+-.+ .....++.+...+.|||++|..+--|+-
T Consensus 205 ~l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 205 AL------DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred cc------CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 32 46789999886322 2345677888999999999997766643
No 188
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.03 E-value=2.8e-10 Score=84.63 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 9 QLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 9 ~ll~~l~~~~~~~-~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
.++..++...+.. .++|+|||+|..+..++..+. +|+++|+++.|++.++++.....+..-..+...+..+++
T Consensus 22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~--- 95 (261)
T KOG3010|consen 22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL--- 95 (261)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc---
Confidence 4556666666665 899999999988888888754 899999999999999987543222211223333333332
Q ss_pred hhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEE
Q 029803 88 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY 128 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~ 128 (187)
+.+++.|+|.+... .-+...+++.+.++|+++| ++.+
T Consensus 96 ----g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 ----GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 12689999987532 2356789999999999887 5554
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.01 E-value=1.2e-08 Score=79.15 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
++.....+...+...++.+|||||||+|..+..++... .+|+++|+++++++.+++++.. .+++++++|+.+.
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 33344444444455677899999999999999999874 3999999999999999987642 4799999998874
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHh
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 118 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~ 118 (187)
-.. .-.+|.|+..........++..+..
T Consensus 100 ~~~-------~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 100 DLS-------ELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred CHH-------HcCcceEEEeCCccchHHHHHHHHh
Confidence 111 0115777776543333445555543
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.98 E-value=2.5e-08 Score=83.63 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=83.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
....+||||||.|.+.+.+|...| +..++++|+....+..+.+.....++. ++.++.+|+......+ ..+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence 456899999999999999999987 899999999999999888888888875 5888888875544443 247899
Q ss_pred EEEEeC---CCc--c------cHHHHHHHHhccCCCeEEEE
Q 029803 99 YAFVDA---DKD--N------YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 99 ~i~~d~---~~~--~------~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|++.. ++. + .+.+++.+.+.|+|||.+.+
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 998763 321 1 35789999999999999987
No 191
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=7.3e-08 Score=68.99 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=79.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
.++.++|||||+|..+.++++.+.++..+.++|++|++++..++-...++. +++.++.|....+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 388999999999999999999987788999999999999998888776664 48899999877654 38899
Q ss_pred EEEEeCCC--------------------cc----cHHHHHHHHhccCCCeEEEEe
Q 029803 99 YAFVDADK--------------------DN----YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 99 ~i~~d~~~--------------------~~----~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+++..... .+ ...++.++-.+|.|.|++.+.
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 88876310 01 123455555788999998774
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.97 E-value=5.1e-09 Score=81.63 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+++..+. ..++..+||.+||.|..+..+++.++++++|+++|.++++++.+++++.. .+++++++++..++...+.
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence 4444442 34567999999999999999999987679999999999999999998765 4589999999988755442
Q ss_pred hcccCCCceeEEEEeCCC
Q 029803 89 KYSENEGSFDYAFVDADK 106 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~ 106 (187)
. ...++|.|++|...
T Consensus 86 ~---~~~~vDgIl~DLGv 100 (296)
T PRK00050 86 E---GLGKVDGILLDLGV 100 (296)
T ss_pred c---CCCccCEEEECCCc
Confidence 1 01379999998543
No 193
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.95 E-value=7.7e-09 Score=85.22 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=77.1
Q ss_pred CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 20 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.+.|+++|||+|-.+...+++. ....+|+++|-++.+....++.+..++..++++++++|+.+.-. +++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 4679999999999987776654 12469999999999888888887888998899999999987522 469
Q ss_pred eeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|+|+.. +..+..++.+..+-+.|||||+++-
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9999875 2345566778878899999999874
No 194
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.94 E-value=4.6e-09 Score=77.22 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=71.3
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
...+..|+|.-||.|..++.+|... ..|++||++|..+..|++|++.+|.+++++|++||.++....+... ...
T Consensus 92 ~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~~ 165 (263)
T KOG2730|consen 92 CMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KIK 165 (263)
T ss_pred hcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hhe
Confidence 3378899999999999999999864 4999999999999999999999999999999999999988776422 345
Q ss_pred eeEEEEeCC
Q 029803 97 FDYAFVDAD 105 (187)
Q Consensus 97 ~D~i~~d~~ 105 (187)
+|++|..+.
T Consensus 166 ~~~vf~spp 174 (263)
T KOG2730|consen 166 YDCVFLSPP 174 (263)
T ss_pred eeeeecCCC
Confidence 889998753
No 195
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.92 E-value=5.1e-09 Score=77.29 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=65.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++... ...++++|+++++++.++++ +++++++|+.+.++.+ ..++|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf 76 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF 76 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence 466799999999999998887653 45789999999998887642 3678888876533222 24689
Q ss_pred eEEEEeCC---CcccHHHHHHHHhccCC
Q 029803 98 DYAFVDAD---KDNYCNYHERLMKLLKV 122 (187)
Q Consensus 98 D~i~~d~~---~~~~~~~~~~~~~~L~~ 122 (187)
|+|++... ..+...+++++.+.+++
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 99998753 34456677777777664
No 196
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.90 E-value=5.9e-09 Score=81.68 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=79.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
+.+.+.|||+|||+|-.+.+.|++. ..+|+++|-+ ++++.|++.+..+++.+.++++++.+.+. .+ +.++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE--ec-----Cccc
Confidence 5688999999999999999999875 4699999975 46699999999999999999999999875 22 1379
Q ss_pred eeEEEEeC--CCcccHHHHHHHH----hccCCCeEEEEe
Q 029803 97 FDYAFVDA--DKDNYCNYHERLM----KLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~--~~~~~~~~~~~~~----~~L~~gG~lv~~ 129 (187)
.|.|+..- ..--+...++..+ +.|+|||.+.-+
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 99988752 1111222333332 799999998754
No 197
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.88 E-value=3.2e-08 Score=76.03 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
+...+-+-..+...++.+|||||||+|..+..++...+ +++++|+++.+++.+++++.. ..+++++++|+.+..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC
Confidence 33333333344556778999999999999999998753 699999999999999987743 346999999987631
Q ss_pred HHHhhcccCCCcee---EEEEeCCCcccHHHHHHHHh
Q 029803 85 DQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK 118 (187)
Q Consensus 85 ~~~~~~~~~~~~~D---~i~~d~~~~~~~~~~~~~~~ 118 (187)
. ..+| +|+.+.........+.++..
T Consensus 89 ~---------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 89 L---------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred h---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 1 2344 66665443333445555543
No 198
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.87 E-value=1.1e-08 Score=78.75 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=68.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-hcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.|++|+=|||| ...+++.+++....+..|+++|+++++.+.+++.+. ..++..+++++.+|..+....+ ..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------cc
Confidence 35699999999 567778888654446889999999999999999888 5677888999999987643332 68
Q ss_pred eeEEEEeCCC----cccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~~----~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+||+.+-. +...+.++++.+.++||..+++-
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9999998643 37788999999999999999884
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.4e-07 Score=71.96 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=73.8
Q ss_pred HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcc
Q 029803 13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYS 91 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~ 91 (187)
..+...++.+|||||+|.|..|..+++. ..+|+++|+|+..++..++.+. ...+++++++|+... ++.+
T Consensus 24 ~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l---- 93 (259)
T COG0030 24 EAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL---- 93 (259)
T ss_pred HhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh----
Confidence 3344556789999999999999999987 4589999999999999998875 345799999999874 2321
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhc-cCC-CeEEEE
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKL-LKV-GGIAVY 128 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~-L~~-gG~lv~ 128 (187)
..++.|+.+....-...++..+++. ..+ ..++++
T Consensus 94 ---~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 94 ---AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred ---cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 1678888876544444454444432 222 455555
No 200
>PRK04148 hypothetical protein; Provisional
Probab=98.82 E-value=4.2e-08 Score=67.57 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
.+++|.......++++++|||||+|. .+..+++. +..|+++|++++.++.++++ .++++.+|.++.-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 45555555545567899999999997 66666653 67999999999988877765 26788889876433
Q ss_pred HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCC
Q 029803 86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 123 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g 123 (187)
.+ -+.+|+|+.-..+...+..+-.+.+.+.-+
T Consensus 73 ~~------y~~a~liysirpp~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 73 EI------YKNAKLIYSIRPPRDLQPFILELAKKINVP 104 (134)
T ss_pred HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcCCC
Confidence 33 267999998876666666666665555443
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.82 E-value=3e-08 Score=75.23 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
+.+..=+..-+...++..|||||.|+|..|..+.+. +.+|+++|++|.++...++++.....++..++++||....
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~- 119 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT- 119 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-
Confidence 334444444455778899999999999999999986 6799999999999999999998877778999999998764
Q ss_pred HHHhhcccCCCceeEEEEeCCC
Q 029803 85 DQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
+...||.++.....
T Consensus 120 --------d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 --------DLPRFDGCVSNLPY 133 (315)
T ss_pred --------CCcccceeeccCCc
Confidence 13679999876533
No 202
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.82 E-value=5.7e-08 Score=72.13 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=72.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029803 23 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 102 (187)
Q Consensus 23 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~ 102 (187)
|.||||..|+.++++++.-. ..+++++|+++..++.|+++++.+++.+++++..+|.++.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999998754 5689999999999999999999999999999999999886653 234799988
Q ss_pred eC-CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 103 DA-DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 103 d~-~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+ .-....+++++....++....+++.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence 75 3344566777776777766677775
No 203
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.81 E-value=4e-08 Score=74.69 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=85.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCC-----c---------------------chHHHHHHHHHh
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVN-----R---------------------ETYEIGLPIIKK 66 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~---~-~~~~v~~iD~~-----~---------------------~~~~~a~~~~~~ 66 (187)
..-|..|+|+||..|.+++.++..+ . ++.+++++|.= + -..+..++++.+
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 4467789999999999887665432 1 24678898841 0 124555666666
Q ss_pred cCC-CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-cccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCC
Q 029803 67 AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV 144 (187)
Q Consensus 67 ~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~ 144 (187)
.++ .++++++.|...+.++.. ..+++-++.+|++. +.....++.+++.|.|||+|++||....|
T Consensus 152 ~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g--------- 217 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG--------- 217 (248)
T ss_dssp TTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH---------
T ss_pred cCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH---------
Confidence 664 368999999999887764 24688999999853 55677899999999999999999988633
Q ss_pred CCCcccchHHHHHHHHHHhhcCCCeEEEeeecCC
Q 029803 145 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 178 (187)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~ 178 (187)
.+.++.+|.+... ....+.+++.
T Consensus 218 -------cr~AvdeF~~~~g----i~~~l~~id~ 240 (248)
T PF05711_consen 218 -------CRKAVDEFRAEHG----ITDPLHPIDW 240 (248)
T ss_dssp -------HHHHHHHHHHHTT------S--EE-SS
T ss_pred -------HHHHHHHHHHHcC----CCCccEEecC
Confidence 6667777765533 3334556543
No 204
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.79 E-value=1.4e-07 Score=74.42 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=84.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH--Hh---cCC-CCcEEEEEcchHHHHHHHhhcc
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--KK---AGV-DHKINFIESEALSVLDQLLKYS 91 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~~---~~~-~~~~~~~~~d~~~~~~~~~~~~ 91 (187)
...+++|-+|.|.|--..++.+ +|.-.+++-+|++|++++.++++. .. ... +.|++++..|+.++++.-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 4668999999999999888877 454689999999999999999542 22 222 368999999999998874
Q ss_pred cCCCceeEEEEeCCCcc--------cHHHHHHHHhccCCCeEEEEeC
Q 029803 92 ENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+.||.|++|...++ ..+++..+.+.|+++|.+++..
T Consensus 363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 479999999963222 2467888889999999999853
No 205
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.79 E-value=2e-08 Score=69.54 Aligned_cols=111 Identities=23% Similarity=0.341 Sum_probs=74.0
Q ss_pred EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC------CC------cccHHHH
Q 029803 46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DK------DNYCNYH 113 (187)
Q Consensus 46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~------~~------~~~~~~~ 113 (187)
+|+++|+++++++.++++++..++.+++++++.+.......+. .+++|+++.+. ++ +.....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999999999999999999988899999988766543331 24899998762 22 2345678
Q ss_pred HHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEee
Q 029803 114 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 174 (187)
Q Consensus 114 ~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 174 (187)
+.++++|+|||++++ +.+.|+..... ...++.+|.+.+. ...|.+...
T Consensus 76 ~~al~lL~~gG~i~i--v~Y~GH~gG~e----------E~~av~~~~~~L~-~~~~~V~~~ 123 (140)
T PF06962_consen 76 EAALELLKPGGIITI--VVYPGHPGGKE----------ESEAVEEFLASLD-QKEFNVLKY 123 (140)
T ss_dssp HHHHHHEEEEEEEEE--EE--STCHHHH----------HHHHHHHHHHTS--TTTEEEEEE
T ss_pred HHHHHhhccCCEEEE--EEeCCCCCCHH----------HHHHHHHHHHhCC-cceEEEEEE
Confidence 999999999999998 56667544332 4445666666652 234665554
No 206
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.79 E-value=2.8e-08 Score=78.93 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=71.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---------CCCcEEEEEcchHH-HHHHHh
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLL 88 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~~~~~~~d~~~-~~~~~~ 88 (187)
++.+|||+|||-|....-...+ . -.+++++|++++.++.|+++..... ..-...++.+|... .+....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6789999999988765555544 2 5799999999999999999983211 11246678888754 222221
Q ss_pred hcccCCCceeEEEEeCC-------CcccHHHHHHHHhccCCCeEEEEe
Q 029803 89 KYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.. ...+||+|=+... .+....+++++...|+|||+++..
T Consensus 140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 1359999977642 233456899999999999999973
No 207
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.78 E-value=4.2e-08 Score=78.81 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHH-HHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803 2 LLLTIHGQLMAML-LRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 78 (187)
Q Consensus 2 ~~~~~~~~ll~~l-~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 78 (187)
++++.+.+-|... ....+ +..+||+.||.|.+++.+|.. ..+|+++|.++++++.|++|++.+++. +++++.+
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~ 251 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRG 251 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE-
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEe
Confidence 4455555444443 33322 338999999999999999986 459999999999999999999999986 5999999
Q ss_pred chHHHHHHHhh---------cccCCCceeEEEEeCCCcccH-HHHHHH
Q 029803 79 EALSVLDQLLK---------YSENEGSFDYAFVDADKDNYC-NYHERL 116 (187)
Q Consensus 79 d~~~~~~~~~~---------~~~~~~~~D~i~~d~~~~~~~-~~~~~~ 116 (187)
++.+....+.. .......+|+|++|+...... ..++.+
T Consensus 252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 88764332210 000123689999998655443 344443
No 208
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.1e-07 Score=78.01 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803 2 LLLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 77 (187)
Q Consensus 2 ~~~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 77 (187)
+.+...+++|+..+. ....+.++|+.||||.+++.+++. ..+|+++|++|+.++.|++|...++.+ +.+|++
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~ 437 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIV 437 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCcc-ceeeee
Confidence 566677777777766 456678999999999999999986 469999999999999999999999987 599999
Q ss_pred cchHHHHHHHhhcccCCCcee-EEEEeCCCcc-cHHHHHHHHhccCCCeEEEE
Q 029803 78 SEALSVLDQLLKYSENEGSFD-YAFVDADKDN-YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~D-~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
|-+.+.++.+... ...+-+ ++++|..... ...+++.+...-++.=.+.+
T Consensus 438 gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 438 GQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred cchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence 9888888877533 112445 6678865444 34455555544445444433
No 209
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.69 E-value=4.1e-08 Score=72.39 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
+.-|||||||+|-++..+... +...+++|+||.|++.|.+.- +. -.++.+|.-+-++- ..+.||-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~Glpf------rpGtFDg 115 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPF------RPGTFDG 115 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCC------CCCccce
Confidence 668999999999998877653 678999999999999998631 11 34777777654442 4689998
Q ss_pred EEEe--------CCC------cccHHHHHHHHhccCCCeEEEEe
Q 029803 100 AFVD--------ADK------DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 100 i~~d--------~~~------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+++- +++ .....||..++..|++|+.-++.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 8743 111 12345788899999999998885
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=5.6e-08 Score=67.12 Aligned_cols=93 Identities=18% Similarity=0.306 Sum_probs=69.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
..++.++|+|||+|.....++ ++....|.++|++|++++.+++|.+...++ ++++++|..+.-.. .+.|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g~f 115 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GGIF 115 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CCeE
Confidence 478999999999999885443 444678999999999999999999887764 68999998775443 4799
Q ss_pred eEEEEeCCC-----cccHHHHHHHHhccC
Q 029803 98 DYAFVDADK-----DNYCNYHERLMKLLK 121 (187)
Q Consensus 98 D~i~~d~~~-----~~~~~~~~~~~~~L~ 121 (187)
|.++++... ..-..+.+.++++.+
T Consensus 116 DtaviNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 116 DTAVINPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred eeEEecCCCCcccccccHHHHHHHHHHHH
Confidence 999998532 112345555555444
No 211
>PRK10742 putative methyltransferase; Provisional
Probab=98.67 E-value=2.6e-07 Score=69.95 Aligned_cols=87 Identities=10% Similarity=0.192 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc------C--CCCcEEEEEc
Q 029803 9 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------G--VDHKINFIES 78 (187)
Q Consensus 9 ~ll~~l~~~~~~~--~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~ 78 (187)
+.|...+..+++. +|||+.+|+|..++.++.. +++|+++|.+|......+++++.. + ...+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4455555556666 8999999999999999986 678999999999999999998874 2 2257999999
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeC
Q 029803 79 EALSVLDQLLKYSENEGSFDYAFVDA 104 (187)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~D~i~~d~ 104 (187)
|+.+++... ..+||+||+|+
T Consensus 153 da~~~L~~~------~~~fDVVYlDP 172 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDP 172 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECC
Confidence 999998764 35799999996
No 212
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.65 E-value=7.6e-08 Score=68.92 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=60.3
Q ss_pred EEEeCCcchHHHHHHHHHhc--CCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCC
Q 029803 48 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV 122 (187)
Q Consensus 48 ~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~ 122 (187)
+++|+|++|++.|+++.... +...+++++++|+.+. +. ..++||+|++.. ...+....++++.++|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 47999999999998876532 2234699999998764 21 256899998874 334677889999999999
Q ss_pred CeEEEEeCCC
Q 029803 123 GGIAVYDNTL 132 (187)
Q Consensus 123 gG~lv~~~~~ 132 (187)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999887654
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.63 E-value=8.1e-08 Score=72.42 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=58.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHH-HHHHHHhcCCCCcEE-EEEcchHHH-HHHHhhcccCC
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENE 94 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~~~-~~~~d~~~~-~~~~~~~~~~~ 94 (187)
.+++++||+|||+|.++..+++. + ..+|+++|+++.++.. .+++ .++. +-..|+... ...+. ..-
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCc
Confidence 46679999999999999999986 2 4689999999977764 2221 1222 222222211 01110 012
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+.|+.. ...+..+.++|++ |.+++
T Consensus 142 ~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 142 ATFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 4677777753 2357788889999 76664
No 214
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.63 E-value=2e-06 Score=65.33 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=86.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
+..++||||+|.|..+..++..+. +|++.|.|+.|....++ .| .+++..+ +. .. .+.+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg----~~vl~~~--~w-~~------~~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KG----FTVLDID--DW-QQ------TDFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CC----CeEEehh--hh-hc------cCCceE
Confidence 567899999999999999998865 79999999988654443 23 3333322 22 11 146899
Q ss_pred EEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC-------c-cccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029803 99 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG-------G-TVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 167 (187)
Q Consensus 99 ~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (187)
+|-|-. ....+...++.+.+.|+|+|.+++.-++.- + ....|.+.-+-.-.+ ....+..|. .+-.-.
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~ 231 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPA 231 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhc
Confidence 997532 244667889999999999999998655431 1 111221111222233 667788888 555566
Q ss_pred CeEEEe
Q 029803 168 RVQLSH 173 (187)
Q Consensus 168 ~~~~~~ 173 (187)
+|+...
T Consensus 232 GF~v~~ 237 (265)
T PF05219_consen 232 GFEVER 237 (265)
T ss_pred CCEEEE
Confidence 776554
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.57 E-value=3.3e-07 Score=71.68 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=77.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+.+.|||+|||+|..+.+.+.+. ..+|+++|- .+|.+.|++.++.+.+.++++++.|-..++ ++ +++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence 477899999999999988887763 469999997 469999999999999999999999998775 11 4789
Q ss_pred eEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+...- .+...+.+-.+.+.|+|+|.+.-
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99987631 11222233344589999998763
No 216
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.55 E-value=6.4e-07 Score=69.65 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-----cEEEEEcchHH-HHHHHhhc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALS-VLDQLLKY 90 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~-~~~~~~~~ 90 (187)
..+...++++|||-|...+-.-++- -+.++++|+....++.|+++.+...... .+.++.+|... .+..+..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e- 191 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE- 191 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-
Confidence 4567789999999998877666542 4689999999999999998877533221 26788888765 3443321
Q ss_pred ccCCCceeEEEEeC-------CCcccHHHHHHHHhccCCCeEEEE
Q 029803 91 SENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 91 ~~~~~~~D~i~~d~-------~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+...+||+|=+.. ..+...-++.++.+.|+|||++|-
T Consensus 192 -~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 192 -FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred -CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 1234599985542 123345578899999999999986
No 217
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.54 E-value=3.5e-07 Score=72.32 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEE
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINF 75 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~ 75 (187)
.+.....++..++...++.+|+|-+||+|.+...+...+ ....+++|+|+++..+..++-++...+... ...+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 356677888888877778899999999999988877643 126799999999999999998876655443 2468
Q ss_pred EEcchHHHHHHHhhcccCCCceeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEE
Q 029803 76 IESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|++...... ....||+|+..+... ....++..+++.|++||.+.+
T Consensus 110 ~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 110 IQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 888876532110 136899999874210 012478889999999997544
No 218
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.54 E-value=1.3e-06 Score=67.13 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=111.9
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CCC-CcEEEEEcchHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
++.+|+++|-||-|.|......+++ +.-..+..+|++...++..++.++.. ++. .++.++.||...+++...
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---- 192 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---- 192 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence 4678999999999999998888887 44578999999999999999988763 333 679999999999887752
Q ss_pred CCCceeEEEEeCCCcc-------cHHHHHHHHhccCCCeEEEEeC-CCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029803 93 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 164 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (187)
.++||+|+.|..... ...+++.+.+.||+||+++... ..|-. .. ....+++|...+.
T Consensus 193 -~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~-------------~~-~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 193 -ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH-------------LD-YIKEGRSFCYVIF 257 (337)
T ss_pred -cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH-------------HH-HHHHHHHhHHHhc
Confidence 589999999864322 2357788889999999998742 23211 01 4455788888888
Q ss_pred cCCCeEEEeeecC----CceEEEE
Q 029803 165 DDPRVQLSHVALG----DGITICR 184 (187)
Q Consensus 165 ~~~~~~~~~lp~~----~G~~~~~ 184 (187)
....+-.+..|+. -|+.++.
T Consensus 258 ~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 258 DLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred CccceeeecCCCCccceEEEEEec
Confidence 7777877777754 3455444
No 219
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.51 E-value=7.7e-07 Score=65.68 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=62.0
Q ss_pred CCCEEEEEcccccHHHHH---HHhh-C----CCCCEEEEEeCCcchHHHHHHHH--------------Hh-----cC---
Q 029803 19 NAKKTIEIGVFTGYSLLL---TALT-I----PEDGQITAIDVNRETYEIGLPII--------------KK-----AG--- 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~---la~~-~----~~~~~v~~iD~~~~~~~~a~~~~--------------~~-----~~--- 68 (187)
++-+|+-.||++|.-+-. ++.. . +...+|++.|+|+.+++.|++-+ ++ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567899999999943322 2222 1 11359999999999999997521 10 00
Q ss_pred -----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 69 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 69 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+..+++|...|..+..+ ..+.||+|||-. +.+.....++.+.+.|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 11357788877776212 247999999974 3344567899999999999999984
No 220
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.49 E-value=3.5e-06 Score=67.49 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC---C----------------------------CC------
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------DG------ 45 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~----------------------------~~------ 45 (187)
+..+.+.-|-.++...+...++|--||+|...++.|...+ | .+
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 4455666666777777778999999999999999887543 1 01
Q ss_pred -EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------c----ccHHHH
Q 029803 46 -QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------D----NYCNYH 113 (187)
Q Consensus 46 -~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------~----~~~~~~ 113 (187)
.++|+|+++.+++.|+.|...+|+.+.+++.++|+..+-+. .+.+|+|++++.. . -|..+.
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence 37899999999999999999999999999999999765321 1689999998531 1 245556
Q ss_pred HHHHhccCCCeEEEEe
Q 029803 114 ERLMKLLKVGGIAVYD 129 (187)
Q Consensus 114 ~~~~~~L~~gG~lv~~ 129 (187)
+.+.+.++..+..|+.
T Consensus 328 ~~lk~~~~~ws~~v~t 343 (381)
T COG0116 328 RTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCceEEEE
Confidence 6666788888888773
No 221
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.47 E-value=1.1e-06 Score=70.98 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=81.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCce
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
++-++||.=+|+|.=++..+..++...+|+.-|+++++.+..++|++.+++.. ++++.+.|+...+.. ....|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccC
Confidence 45589999999999999999987645799999999999999999999999987 799999999887642 15899
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+|=+|+. .....|++.+.+.++.||+|.+..+
T Consensus 123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 99999852 3456789999999999999998544
No 222
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.47 E-value=1.5e-06 Score=75.86 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhC---CC-----------------------------------
Q 029803 3 LLTIHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTI---PE----------------------------------- 43 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~---~~----------------------------------- 43 (187)
+.+..+.-|-.+... .+...++|.+||+|...++.|... +|
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 344455555555555 456899999999999998877531 11
Q ss_pred ---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC
Q 029803 44 ---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 105 (187)
Q Consensus 44 ---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~ 105 (187)
..+++++|+++++++.|++|+..+++.+.+++.++|+.+..... ..++||+|++++.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 23799999999999999999999999888999999997752211 1257999999853
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.47 E-value=3.2e-06 Score=71.58 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHHHHHHHHhcCC
Q 029803 4 LTIHGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKKAGV 69 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~-------~~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~~~ 69 (187)
++.++++|..++... ...+|||.|||+|.+.+.++..++. ...++++|+++..+..++.++...+.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 344555555444221 4568999999999999988876631 25789999999999999999877652
Q ss_pred CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC
Q 029803 70 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 104 (187)
Q Consensus 70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~ 104 (187)
....+.+.|.......... ...+.||+|+..+
T Consensus 89 -~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNP 120 (524)
T TIGR02987 89 -LEINVINFNSLSYVLLNIE--SYLDLFDIVITNP 120 (524)
T ss_pred -CCceeeecccccccccccc--cccCcccEEEeCC
Confidence 2345666664432110000 0135899999774
No 224
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.47 E-value=5.7e-06 Score=61.27 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=81.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
+..++.||||..++.++++.+..+ ..++++.|+++..++.|.+++.++++.+++++..+|.+..+.. +..+|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d 87 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEID 87 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcC
Confidence 445599999999999999998766 7899999999999999999999999999999999998654432 34799
Q ss_pred EEEEeC-CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 99 YAFVDA-DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 99 ~i~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.|++.+ .-.-...++++-.+.|+.--.+++.
T Consensus 88 ~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 88 VIVIAGMGGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred EEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence 998875 3334556666666666654456653
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.44 E-value=5.9e-06 Score=60.94 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=82.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.+||++|-|.|.....+-.. + -.+-+.||..|+.++..+++- ..-..++-++.+.-.+.++.+. ++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~-p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-P-PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-C-CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence 68899999999999888777654 3 356678899999888776653 2223568888888888888774 5679
Q ss_pred eEEEEeCCCcc---cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 98 DYAFVDADKDN---YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 98 D~i~~d~~~~~---~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|=|+-|...+. ...+.+.+.++|||+|++-+-|.+-
T Consensus 171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 99999975444 4567888899999999998865553
No 226
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.44 E-value=5.1e-06 Score=61.75 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-------hcCC-CCcEEEEEcc
Q 029803 8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIESE 79 (187)
Q Consensus 8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~d 79 (187)
..+++ .+...+....+|||||.|...+..|...+ -.+.+|||+.+...+.|+...+ ..+. ...+++.++|
T Consensus 32 ~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34443 33566788999999999999888876654 4579999999998877765332 2333 2568889999
Q ss_pred hHHH--HHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 80 ALSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 80 ~~~~--~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
..+. ...+ -...|+||++.. .+.....+......||+|..||....+.
T Consensus 110 fl~~~~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 110 FLDPDFVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp TTTHHHHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred ccccHhHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 8652 2332 146899999753 2344455667778999999988754443
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=6.6e-06 Score=60.67 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=70.8
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~ 94 (187)
..++..|+|+|+..|.|+..+++.+.++++|+++|+.|-. .. ..+.++++|+.+ .+..+... ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~-l~~ 109 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEA-LGG 109 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHH-cCC
Confidence 4467899999999999999999998877889999998642 11 348888888743 22222111 123
Q ss_pred CceeEEEEeCCC--------ccc------HHHHHHHHhccCCCeEEEEeC
Q 029803 95 GSFDYAFVDADK--------DNY------CNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 95 ~~~D~i~~d~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++|+|++|..+ .++ ...++.+...|+|||.+++..
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 457999999644 111 224555568999999999863
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.41 E-value=9.5e-07 Score=64.42 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 6 IHGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 6 ~~~~ll~~l~~~~-----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
..-+|...+-+.. ++.++||+||+.|.++..++....+..+|+++|+.+. ... ..+..+++|.
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~ 72 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGG
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeeccc
Confidence 3344444444433 4489999999999999999998744689999999876 111 2355555554
Q ss_pred HH-----HHHHHhhcccCCCceeEEEEeCCCc--------c------cHHHHHHHHhccCCCeEEEEe
Q 029803 81 LS-----VLDQLLKYSENEGSFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~~D~i~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+ .+..... ...+++|+|++|..+. . ....+..+.+.|++||.+++.
T Consensus 73 ~~~~~~~~i~~~~~--~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 73 TNPENIKDIRKLLP--ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp EEEEHSHHGGGSHG--TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred chhhHHHhhhhhcc--ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 32 2222110 0136899999997211 1 122344556889999988874
No 229
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.41 E-value=4.7e-06 Score=65.34 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+++..| ...++..++|..+|.|..+..++..++ +++|+++|.++++++.+++.+..+ .+++++++++..++...+.
T Consensus 11 Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 11 EVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence 344443 234667999999999999999999887 599999999999999999988754 4689999999887655442
Q ss_pred hcccCCCceeEEEEeCCC
Q 029803 89 KYSENEGSFDYAFVDADK 106 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~ 106 (187)
.. ...++|.|++|...
T Consensus 87 ~~--~~~~vDgIl~DLGv 102 (305)
T TIGR00006 87 EL--LVTKIDGILVDLGV 102 (305)
T ss_pred hc--CCCcccEEEEeccC
Confidence 21 13579999998543
No 230
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.40 E-value=2.6e-06 Score=63.30 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=72.6
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++.+||-+|+.+|.+...++.-..+++.|+++|.++......-...++. .|+-.+.+|+.....-. .--+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~----~lv~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR----MLVEM 143 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT----TTS--
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh----ccccc
Confidence 557889999999999999999998877899999999996544443333322 35777888886432211 01368
Q ss_pred eeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVDADKDN-YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|+||.|-..++ ..-+..++...||+||.+++
T Consensus 144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence 999999975544 44567777789999998886
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.40 E-value=1.2e-06 Score=61.18 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=50.2
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
+++||||+.|..+.+++...+ ..+++++|++|++++.++++++.+++. ++++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence 489999999999999998765 679999999999999999999988775 4777776654
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.38 E-value=1.7e-05 Score=55.48 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=57.8
Q ss_pred HHHHHHHHHH----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcC--CCCcEEEEEc
Q 029803 8 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIES 78 (187)
Q Consensus 8 ~~ll~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~ 78 (187)
.+++..+... .++.+|+|+|||.|+.+..++..+ .++.+|+++|.+++..+.+++..+..+ ...+.++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 4555555555 778899999999999999999822 137899999999999999999988766 4345666666
Q ss_pred chHH
Q 029803 79 EALS 82 (187)
Q Consensus 79 d~~~ 82 (187)
+..+
T Consensus 90 ~~~~ 93 (141)
T PF13679_consen 90 DIAD 93 (141)
T ss_pred chhh
Confidence 6544
No 233
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.37 E-value=2.3e-06 Score=68.69 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=87.2
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.-.++.+|||.++..|.=+.++|..+...+.|++.|.+...+...+.++...|+.+ .-+.+.|..++-... ..+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~-----~~~ 311 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKE-----FPG 311 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccc-----cCc
Confidence 34577899999999999999999988867999999999999999999999999764 566777776542111 134
Q ss_pred ceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 96 SFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 96 ~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+||-|.+|+..+. -...+..+.+++++||+||.+.+.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8999999964322 024667778999999999997655
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.29 E-value=3e-06 Score=65.31 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=68.4
Q ss_pred CCCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCcchHHHHHHHHHh-----cCCC---------------
Q 029803 19 NAKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AGVD--------------- 70 (187)
Q Consensus 19 ~~~~vLeiG~g~G~----~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~~~--------------- 70 (187)
++-+|+-.||++|- .+..+.+.++. ..+|++.|+|...++.|+.-+=. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 37799999999993 44444454432 57899999999999998753211 1111
Q ss_pred --------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 71 --------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 71 --------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.|...|..+..+ ..+.||+|||-. +.+.-...++..+..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 123333333322111 246799999863 3445567889999999999999983
No 235
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.28 E-value=9.5e-06 Score=63.99 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
-...+|+|.|.|..+..+...+| ++-+++.+...+..+.+++. .| ++.+.+|.++.. ++-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence 47899999999999999999766 68888888777777777664 33 778888887653 45569
Q ss_pred EEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803 100 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG 134 (187)
Q Consensus 100 i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
||+.- ..++...++++|++.|+|||.|++-+...+
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 98752 345678899999999999999888666543
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.27 E-value=4.3e-06 Score=64.63 Aligned_cols=119 Identities=10% Similarity=0.006 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
++.+..-+...+...+...|||||+|.|..|..+++.. .+++++|.++...+..++.+. ...+++++++|+.++
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc
Confidence 34455555555566688999999999999999999874 699999999999998888765 345799999999874
Q ss_pred HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCC---CeEEEEeCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV---GGIAVYDNTL 132 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~---gG~lv~~~~~ 132 (187)
-.... .......|+..........++.++...-+. ..++++..-+
T Consensus 89 ~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~ 136 (262)
T PF00398_consen 89 DLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEV 136 (262)
T ss_dssp CGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHH
T ss_pred ccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhh
Confidence 11100 012445666654443444566666653333 3556654333
No 237
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.24 E-value=1.4e-06 Score=67.97 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCEEEEEcccccHHHHH----HHhhCC---CCCEEEEEeCCcchHHHHHHHH------------------Hhc-----C
Q 029803 19 NAKKTIEIGVFTGYSLLL----TALTIP---EDGQITAIDVNRETYEIGLPII------------------KKA-----G 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~----la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~-----~ 68 (187)
++-+|+-.||.+|--+-. +....+ ...+|+++|+++.+++.|++-+ ... +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 446999999999943222 223222 1368999999999999998642 100 0
Q ss_pred -------CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 69 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 69 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+...++|...|..+. .+ ...+.||+|+|-. +.+.....++.+.+.|+|||+|++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~--~~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAK--QW----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCC--CC----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 113445555555431 00 0136899999842 3445667899999999999999883
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.23 E-value=3.1e-06 Score=61.14 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
...+.|+|+|+|-.+...+.. ..+|+++|.+|..+..|.+|+.-.+. .+++++.+|+.+.- -+..|.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~ADv 99 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENADV 99 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------ccccce
Confidence 378999999999998877765 45999999999999999999876665 46999999998751 156788
Q ss_pred EEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 100 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 100 i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+|.- -.+..-..++.+++-|+.++.++-..+
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence 87642 112233456777788999998876544
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.19 E-value=1.6e-05 Score=61.79 Aligned_cols=112 Identities=10% Similarity=0.089 Sum_probs=68.3
Q ss_pred HHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 9 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 9 ~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
.+|..+.. ..+|++|||+|+|.|..+..+...++.-.+++++|.++.+.+.++..+......... ...... ..
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~-~~~~~~---~~ 95 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNA-EWRRVL---YR 95 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccc-hhhhhh---hc
Confidence 44444443 357899999999999776666665564568999999999999999887653321111 011111 11
Q ss_pred HHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 86 QLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.. ......|+|++.. .......+++++++.+++ -+|+++
T Consensus 96 ~~----~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE 139 (274)
T PF09243_consen 96 DF----LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVE 139 (274)
T ss_pred cc----ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence 11 0123459998764 124455677888887766 334443
No 240
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.17 E-value=7.4e-05 Score=54.25 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
--...+.++-..+|..|+|+|+-.|.+++++|... ....+|.++|++-...+.+-.. ..++.++.+++.+.
T Consensus 57 D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dp 130 (237)
T COG3510 57 DMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDP 130 (237)
T ss_pred HHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCH
Confidence 33456677777899999999999999999998754 2236899999876554332221 34699999997552
Q ss_pred --HHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCccc
Q 029803 84 --LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 137 (187)
Q Consensus 84 --~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~ 137 (187)
..+.... ....+-=+++.|.+ +++....++...++|..|.++++.|...+++.
T Consensus 131 ai~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 131 AIAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred HHHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 2222111 00122224455544 34566778888899999999999998887764
No 241
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.15 E-value=7.7e-05 Score=59.10 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=76.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccC
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
.++..++|+|||+|.=+..++.++.+ ..+++.+|+|.+.++.+.+++....++ -.+.-+++|..+.+..+... ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~-~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP-EN 153 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc-cc
Confidence 34558999999999988877777642 367999999999999999998733433 23445889887765443210 00
Q ss_pred CCceeEEEEeC------CCcccHHHHHHHHh-ccCCCeEEEE
Q 029803 94 EGSFDYAFVDA------DKDNYCNYHERLMK-LLKVGGIAVY 128 (187)
Q Consensus 94 ~~~~D~i~~d~------~~~~~~~~~~~~~~-~L~~gG~lv~ 128 (187)
.....+++.-+ .+.....+++++.+ .|+||+.+++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 12345554432 23455678899988 9999998877
No 242
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4.4e-05 Score=60.71 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=85.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
+.+|+|--+|+|.=++.++...+ ..+++.=|++|++.+.+++|+..+... ...+++.|+...+.+. ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence 89999999999999999998876 348999999999999999999987433 4667779998877653 478999
Q ss_pred EEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 100 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|=+|+- .....|++.+.+.++.||++.+..+
T Consensus 125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred EecCCC-CCCchHHHHHHHHhhcCCEEEEEec
Confidence 988852 3445688999999999999998544
No 243
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.12 E-value=6.9e-06 Score=60.54 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 86 (187)
+..++..+....+...|-|.|||.+..+.. ++...+|.++|+.+. +-.++.+|.... |
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~----------------n~~Vtacdia~v-P- 117 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP----------------NPRVTACDIANV-P- 117 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS--S-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC----------------CCCEEEecCccC-c-
Confidence 445666666555567899999999987743 333468999998642 123566776442 1
Q ss_pred HhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029803 87 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 164 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (187)
+ ++++.|+++.... -.++.++++++++.||+||.+.+..+...- ..+++|.+.+.
T Consensus 118 L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf------------------~~~~~F~~~~~ 174 (219)
T PF05148_consen 118 L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF------------------ENVKQFIKALK 174 (219)
T ss_dssp -------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHH
T ss_pred C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC------------------cCHHHHHHHHH
Confidence 1 2589999987653 367899999999999999999987665211 12788888877
Q ss_pred cCCCeEEE
Q 029803 165 DDPRVQLS 172 (187)
Q Consensus 165 ~~~~~~~~ 172 (187)
.- +|...
T Consensus 175 ~~-GF~~~ 181 (219)
T PF05148_consen 175 KL-GFKLK 181 (219)
T ss_dssp CT-TEEEE
T ss_pred HC-CCeEE
Confidence 43 45443
No 244
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.06 E-value=0.00029 Score=53.16 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=61.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
..+++||-+|=..-.+ +.++.... ..+|+.+|+++..++..++..++.+++ ++.++.|..+.+|.- -.++|
T Consensus 43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~-----~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEE-----LRGKF 113 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TT-----TSS-B
T ss_pred ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHH-----HhcCC
Confidence 3689999999554444 44443333 479999999999999999999999986 999999998877752 15799
Q ss_pred eEEEEeCC--CcccHHHHHHHHhccCCCe
Q 029803 98 DYAFVDAD--KDNYCNYHERLMKLLKVGG 124 (187)
Q Consensus 98 D~i~~d~~--~~~~~~~~~~~~~~L~~gG 124 (187)
|++|.|+. .+...-|+.+..+.||..|
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999974 3456678999999998776
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=5.3e-05 Score=55.47 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=76.5
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~ 94 (187)
..++.+||=+|+.+|.+...++.-.+ .+.++++|.++......-..+++ -+|+-.+.+|+...- ..+ -
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~------V 143 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHL------V 143 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhh------c
Confidence 56788999999999999999998877 89999999999866554444443 245767778875432 222 3
Q ss_pred CceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
+..|+|+.|-..++ ..-+..++..-|++||.+++
T Consensus 144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 67999999976544 44467777889999997665
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.99 E-value=2e-05 Score=61.60 Aligned_cols=80 Identities=15% Similarity=0.305 Sum_probs=48.9
Q ss_pred CCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEEcchHH-HHHHHhhcccCCCc
Q 029803 20 AKKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALS-VLDQLLKYSENEGS 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~ 96 (187)
..++||||||.-.. .+-.++. . +.++++.|+++..++.|+++++.+ ++.++++++...... ++..+.. ..+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-
T ss_pred ceEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccce
Confidence 35799999987643 3333333 2 789999999999999999999998 899999997764332 3333221 2468
Q ss_pred eeEEEEeC
Q 029803 97 FDYAFVDA 104 (187)
Q Consensus 97 ~D~i~~d~ 104 (187)
||+..|.+
T Consensus 178 ~dftmCNP 185 (299)
T PF05971_consen 178 FDFTMCNP 185 (299)
T ss_dssp EEEEEE--
T ss_pred eeEEecCC
Confidence 99999975
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00012 Score=56.85 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=70.1
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..+....+|..-|.|..+..+++.+++.++++++|.+|++++.|++.+...+ +++++++++..+....+... ...+
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence 4456789999999999999999999878899999999999999999987655 68999999987765554322 2458
Q ss_pred eeEEEEeCC
Q 029803 97 FDYAFVDAD 105 (187)
Q Consensus 97 ~D~i~~d~~ 105 (187)
+|-|++|..
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999998853
No 248
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.98 E-value=4.1e-06 Score=68.92 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-hcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
-+.+||+|||+|.++.++... .|+++-..+.-...++..+. ..|++..+.++ +..-++ ...+.||
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~---~s~rLP------fp~~~fD 183 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVL---GSQRLP------FPSNAFD 183 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcCcchhhhhh---cccccc------CCccchh
Confidence 357999999999999998864 33443333322222222222 12443222111 011122 2368999
Q ss_pred EEEEeCC----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 99 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 99 ~i~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+|.+... ...-.-++-++-++|+|||+++++....
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 9988642 2222335566679999999999876553
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.95 E-value=4.7e-05 Score=59.80 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+++..|. ..++..++|..-|.|..+..+++.++ +++++++|.+|++++.+++++... .+++.+++++..++...+.
T Consensus 11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 4444443 45667999999999999999999998 599999999999999999887644 5789999999876544432
Q ss_pred hcccCCCceeEEEEeCCCc
Q 029803 89 KYSENEGSFDYAFVDADKD 107 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~~ 107 (187)
.. ....++|-|++|...+
T Consensus 87 ~~-~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 87 EL-NGINKVDGILFDLGVS 104 (310)
T ss_dssp HT-TTTS-EEEEEEE-S--
T ss_pred Hc-cCCCccCEEEEccccC
Confidence 21 1246899999996443
No 250
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0001 Score=52.16 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=67.5
Q ss_pred HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC--cEEEEEcchHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~ 92 (187)
+..++++|||+|.|. |-.++.+|...+ ...|...|-+++.+...++....+-.+. ++.++.-+... .+...
T Consensus 26 n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~--aqsq~--- 99 (201)
T KOG3201|consen 26 NKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG--AQSQQ--- 99 (201)
T ss_pred hHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh--hHHHH---
Confidence 455778999999884 555666666554 7899999999999988887765432111 12111111111 11111
Q ss_pred CCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+...||.|++... .+......+.++.+|+|.|.-++
T Consensus 100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 2468999987431 34455677888899999987555
No 251
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.92 E-value=0.0001 Score=58.46 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=64.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+++++|||||++|.++-.+++. +.+|++||..+ +.. .+. -.++++.+.+|.....+. .+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~----~L~---~~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQ----SLM---DTGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCH----hhh---CCCCEEEEeccCcccCCC-------CCCC
Confidence 57789999999999999999885 67999999654 211 121 135799999998776442 3689
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCC--eEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVG--GIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~g--G~lv~ 128 (187)
|++++|... ......+.+.+.|..| ...|+
T Consensus 272 DwvVcDmve-~P~rva~lm~~Wl~~g~cr~aIf 303 (357)
T PRK11760 272 DWLVCDMVE-KPARVAELMAQWLVNGWCREAIF 303 (357)
T ss_pred CEEEEeccc-CHHHHHHHHHHHHhcCcccEEEE
Confidence 999999643 3334555666666655 34444
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=6.7e-05 Score=56.32 Aligned_cols=99 Identities=20% Similarity=0.136 Sum_probs=72.5
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~ 95 (187)
..+++.+||||+.||.++..+++.- ..+|+++|..-..++.--+ ...++..+ ..++....+.-. .+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~~~~~-----~~ 143 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLTPEDF-----TE 143 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCCHHHc-----cc
Confidence 4588899999999999999988863 4699999998766553222 13455544 344444322211 34
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..|++++|...-.....+..+..++++++.+++
T Consensus 144 ~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 144 KPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 789999998887888889999999999987775
No 253
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.89 E-value=9.7e-05 Score=54.16 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=74.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC------CCcEEEEEcchHHHHHHHhhccc
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
+...+.|||||.|.....++..+| +.-+.++|+.-..-+..++++..... -.++.+...++..+++.+...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k-- 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK-- 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh--
Confidence 445799999999999999999988 78899999988888888888776541 235788889998888877433
Q ss_pred CCCceeEEEEe-CCCc----------ccHHHHHHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVD-ADKD----------NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d-~~~~----------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+..+-+|.- .++. .....+.+..=+|++||.+..
T Consensus 137 --gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 137 --GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred --cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 333333322 2111 112355566678999998865
No 254
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.86 E-value=0.00019 Score=55.17 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=67.9
Q ss_pred cCCCEEEEEccccc--HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh---hcc-
Q 029803 18 VNAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---KYS- 91 (187)
Q Consensus 18 ~~~~~vLeiG~g~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~- 91 (187)
..-...||||||.- .++-.+|+...++++|+.+|.+|-.+..++..+..... .+..++++|..+.-.-+. ...
T Consensus 67 ~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 67 AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 35578999999944 46677877776799999999999999999998875432 358899999876422220 000
Q ss_pred -cCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 92 -ENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 92 -~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+-..+.-++++. .+.......+..+...|.||++|++....
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 113344444443 13356778899999999999999997554
No 255
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=4.9e-05 Score=55.38 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=70.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..++++|||.|+|+|-.++..++.. ...|+..|++|-....++-|.+.+++. +.+.+.|... .+..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g----------~~~~ 142 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG----------SPPA 142 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC----------CCcc
Confidence 5578899999999999988877763 468999999999888889898888753 7788877643 2578
Q ss_pred eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
||+++..- ++......+. +...++..|..++
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 99998752 3444444555 4455555554443
No 256
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=1.7e-05 Score=65.01 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=93.9
Q ss_pred HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803 12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 91 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (187)
..+.+..++-+|||.=+++|.-++..|..++.-.++++-|.+++.++..++|++.++..+.++..++|+.-..-....
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~-- 179 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM-- 179 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc--
Confidence 344556678899999999999999999999855789999999999999999999988888899999998764332210
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
....||+|-+|.. .....|++.+.+.+..||+|++.-+
T Consensus 180 -~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 180 -VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred -cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence 1368999999853 2345688999999999999998544
No 257
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=4.1e-05 Score=57.23 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=72.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
....++||||+.|+....+.... -.+++.+|.+..|++.++..- ..+ -......+|- ++++ + .++++|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~--i~~~~~v~DE-E~Ld-f-----~ens~D 139 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPS--IETSYFVGDE-EFLD-F-----KENSVD 139 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCc--eEEEEEecch-hccc-c-----cccchh
Confidence 44689999999999988876642 468999999999998877542 112 2244566663 3444 2 368999
Q ss_pred EEEEe---CCCcccHHHHHHHHhccCCCeEEEE
Q 029803 99 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 99 ~i~~d---~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+|+.. ++..+.+..+.+|...|||+|.++.
T Consensus 140 LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 99876 3556778889999999999999886
No 258
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.76 E-value=0.00024 Score=54.90 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcC-------CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-----------
Q 029803 7 HGQLMAMLLRLVN-------AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------- 68 (187)
Q Consensus 7 ~~~ll~~l~~~~~-------~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------- 68 (187)
...++..|-...+ +.+||--|||.|..+..+|.. +..+.+.|.|--|+-..+=.+....
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 3455555555544 468999999999999999986 6799999998877654433222100
Q ss_pred ----------------------------CCCcEEEEEcchHHHHHHHhhcccCCCceeEE----EEeCCCcccHHHHHHH
Q 029803 69 ----------------------------VDHKINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERL 116 (187)
Q Consensus 69 ----------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i----~~d~~~~~~~~~~~~~ 116 (187)
...++.+..||..+....- ...++||.| |+| ..++..++++.+
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI 188 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFID-TAENIIEYIETI 188 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEee-chHHHHHHHHHH
Confidence 0123444445544432210 013689988 454 356788999999
Q ss_pred HhccCCCeEEEEeCCC
Q 029803 117 MKLLKVGGIAVYDNTL 132 (187)
Q Consensus 117 ~~~L~~gG~lv~~~~~ 132 (187)
.++|||||+.|=-..+
T Consensus 189 ~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 189 EHLLKPGGYWINFGPL 204 (270)
T ss_pred HHHhccCCEEEecCCc
Confidence 9999999977644444
No 259
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.75 E-value=7.6e-05 Score=61.35 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=86.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
.+..+|-+|-|.|....++-..+| ..++++++++|++++.++.++.-..- .+..+...|..+++.+..+...+...||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 345688888888999888888887 78999999999999999999864332 3567788888888877765433467899
Q ss_pred EEEEeCCCcc------------cHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803 99 YAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNTLWG 134 (187)
Q Consensus 99 ~i~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
++++|.+... .+.++..+...|.|.|+++++-+.++
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 9999853221 13456666689999999999766643
No 260
>PHA01634 hypothetical protein
Probab=97.71 E-value=0.00013 Score=49.57 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=54.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++++|+|||.+.|.++++++..- ..+|+++|+++...+..+++++.+..-+...... + .+. .=++|
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-e----W~~------~Y~~~ 93 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-E----WNG------EYEDV 93 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-c----ccc------cCCCc
Confidence 478999999999999999998763 4689999999999999999887654332222111 1 111 13789
Q ss_pred eEEEEeC
Q 029803 98 DYAFVDA 104 (187)
Q Consensus 98 D~i~~d~ 104 (187)
|...+|.
T Consensus 94 Di~~iDC 100 (156)
T PHA01634 94 DIFVMDC 100 (156)
T ss_pred ceEEEEc
Confidence 9999986
No 261
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.68 E-value=0.00057 Score=59.62 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=70.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchH--------------HHHHHHHHhc-----C
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETY--------------EIGLPIIKKA-----G 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~--------------~~a~~~~~~~-----~ 68 (187)
+.-+|+|+|=|+|.+.+.....+ ++ ..+++++|..|-.. +.+++..+.+ +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999877766544 21 24789999765222 2222222221 1
Q ss_pred C------CC--cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----cc-cHHHHHHHHhccCCCeEEEE
Q 029803 69 V------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DN-YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 69 ~------~~--~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
+ .+ +.+++.||+.+.++.+ ...+|++|.|+-. +. ..++++++.+++++||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1 11 3558889999988876 3579999999622 11 35689999999999999985
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.67 E-value=6.5e-05 Score=56.65 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=52.1
Q ss_pred HHHHHHHcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---CC-----CCcEEEEEcch
Q 029803 11 MAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIESEA 80 (187)
Q Consensus 11 l~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~~~~~~~d~ 80 (187)
|...+...++ .+|||..+|.|..++.++.. +++|+++|-+|-.....+.-++.+ .. ..+++++++|+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3333434444 38999999999999988864 679999999998776666444321 11 14799999999
Q ss_pred HHHHHHHhhcccCCCceeEEEEeC
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDA 104 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~ 104 (187)
.++++.. .++||+|++|+
T Consensus 142 ~~~L~~~------~~s~DVVY~DP 159 (234)
T PF04445_consen 142 LEYLRQP------DNSFDVVYFDP 159 (234)
T ss_dssp CCHCCCH------SS--SEEEE--
T ss_pred HHHHhhc------CCCCCEEEECC
Confidence 9887621 58999999995
No 263
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.66 E-value=5.8e-05 Score=57.85 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=66.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc--------------------------
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-------------------------- 72 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-------------------------- 72 (187)
++.++||||||.-.. .+..+.+.-.+|+..|..++-.+..+++++..+.-++
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 566899999987432 2222222235899999999988888887765432111
Q ss_pred --EEEEEcchHHHHHHHhhcccCCCceeEEEEeC-------CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 73 --INFIESEALSVLDQLLKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 73 --~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
-+++.+|..+.-+ +......+++||.|+... +.+.|...++++..+|||||.+++..++-..
T Consensus 134 ~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp HEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred hhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 1244444433100 000000023599998763 4456788899999999999999997766433
No 264
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.60 E-value=0.00088 Score=46.19 Aligned_cols=103 Identities=21% Similarity=0.218 Sum_probs=66.1
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCC-CceeEE
Q 029803 23 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYA 100 (187)
Q Consensus 23 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~-~~~D~i 100 (187)
++|+|||+|... .++...+....++++|+++.++..++..... .....+.+..++.... ++- .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999977 4444333124889999999988885544432 2111156777776542 111 12 379999
Q ss_pred EEeCCC--cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 101 FVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 101 ~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
...... ......+..+.+.++|+|.+++.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 332211 113678888999999999998876554
No 265
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.59 E-value=0.00011 Score=59.22 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=82.1
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...++..++++|||.|....+++.. . ..++++++.++..+..+.......++.++..++.++..... .+++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f-~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn 177 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF-K-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDN 177 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh-c-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCcc
Confidence 3456667999999999999999875 2 68999999999998888888777777766666665554321 2467
Q ss_pred ceeEEE-EeC--CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDYAF-VDA--DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~i~-~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.||.+. ++. ..+.....++++++.++|||+.+..+.
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 899885 443 345677889999999999999998544
No 266
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.57 E-value=0.00026 Score=53.84 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 86 (187)
+..++..+-.......|-|+|||-+..+. . ....|+++|+.+- +-+++.+|..+. +
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~----------------~~~V~~cDm~~v-P- 223 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAV----------------NERVIACDMRNV-P- 223 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeecC----------------CCceeeccccCC-c-
Confidence 34556666555566679999999987754 2 2458999998532 345667777652 2
Q ss_pred HhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 87 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.++++.|+++.... -.+..++++++.+.|++||.+.+..+-
T Consensus 224 -----l~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 224 -----LEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred -----CccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 13689998876543 357889999999999999999886554
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0011 Score=52.84 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=78.5
Q ss_pred HHHcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh--h
Q 029803 15 LRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--K 89 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~ 89 (187)
+...+..+|||.++.-|.-++.+.+.+-+ .+.|++=|.++..+........... ..+..+...++..+ +... .
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~-p~~~~~~ 228 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLF-PNIYLKD 228 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceec-ccccccc
Confidence 45678899999999999999888887742 3589999999998888887774433 23444444444322 1110 0
Q ss_pred cc-cCCCceeEEEEeCCCcc--------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 90 YS-ENEGSFDYAFVDADKDN--------------------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 90 ~~-~~~~~~D~i~~d~~~~~--------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.+ .....||-|++|...+. -..++.+.+++||+||.+|.+.+..
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 00 12468999999942100 0235677789999999999986654
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.38 E-value=0.00052 Score=52.15 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=83.5
Q ss_pred HHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 9 ~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
.+...+... ..|.+|+|||||.--.++..... +++..++++|++..+++...+.+...+.. .++...|.....
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~--- 167 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP--- 167 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH---
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC---
Confidence 344444333 34899999999988887766644 34789999999999999999999888754 555555654432
Q ss_pred hhcccCCCceeEEEEeCCCcc----cHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029803 88 LKYSENEGSFDYAFVDADKDN----YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 163 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~~----~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (187)
.....|+.++-=..+. ....--.+++.++..=++|-- .. ..-..+.++ +......+.+..
T Consensus 168 -----~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~~~vVSf-Pt---------rSL~gR~~g-m~~~y~~~fe~~ 231 (251)
T PF07091_consen 168 -----PKEPADLALLLKTLPCLERQRRGAGLELLDALRSPHVVVSF-PT---------RSLGGRNKG-MEQTYSAWFEAL 231 (251)
T ss_dssp -----TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCESEEEEEE-ES----------------TT-HHHCHHHHHHHH
T ss_pred -----CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCCeEEEec-cc---------cccccCccc-cccCHHHHHHHh
Confidence 2468999987421111 111212223444443333321 11 111222333 444456666666
Q ss_pred hcCCCeEEEeeecCCceE
Q 029803 164 ADDPRVQLSHVALGDGIT 181 (187)
Q Consensus 164 ~~~~~~~~~~lp~~~G~~ 181 (187)
...-.+.....-+++-+.
T Consensus 232 ~~~~~~~~~~~~~~~Elv 249 (251)
T PF07091_consen 232 AAERGWIVDRLTFGNELV 249 (251)
T ss_dssp CCTTCEEEEEEEETTEEE
T ss_pred cccCCceeeeeeccccee
Confidence 667777777777776543
No 269
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.36 E-value=0.003 Score=49.69 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.+.+.+||-+|+| .|..+...|+++. ..+|+.+|++++.++.|++ + |.......-+.+..+.+.+...+.....
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence 5577899999998 6788888888887 7899999999999999998 4 4332222222222233232222212234
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+|+.|-- ......++.+...++++|.+++..
T Consensus 242 ~~d~~~dC---sG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDC---SGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCCeEEEc---cCchHHHHHHHHHhccCCEEEEec
Confidence 58888743 234456777789999999987754
No 270
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0033 Score=45.72 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=64.6
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHH--HHHHHhhcccC
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS--VLDQLLKYSEN 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~~~~~ 93 (187)
..+..+|||+|+..|.|+...-+...+++.|.++|+..- ... .-++++.+ |..+ ....+... ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~-lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEA-LP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHh-CC
Confidence 346789999999999999988888866999999998431 111 12445544 3322 11111111 13
Q ss_pred CCceeEEEEeCCC-------cccHHH-------HHHHHhccCCCeEEEEeCCCCCc
Q 029803 94 EGSFDYAFVDADK-------DNYCNY-------HERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 94 ~~~~D~i~~d~~~-------~~~~~~-------~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
+.+.|+|+.|-.+ .+.... +-.+...++|+|.+++. +|.|
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 5689999998422 111122 23334788899999984 5555
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.0044 Score=49.44 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=69.9
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
...++++|+-+|.| .|..++.+|+++ +.+|+++|.+++..+.|++. +. -.++.....+..+.. .
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~ 227 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------K 227 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------H
Confidence 45678888888876 567888999976 48999999999998888875 22 223332222333333 2
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+.+|+|+.-.. ...++...+.|+++|.+++-...
T Consensus 228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 34998887542 56778889999999999986544
No 272
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00052 Score=50.08 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=64.3
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH----HHHHHH-HHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY----EIGLPI-IKKAGVDHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~----~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (187)
...++.+|+|+-.|.|+++.-++....+.++|+++-..+... +..+.+ +.+.....+.+.+-.+.....
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~------ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG------ 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC------
Confidence 356778999999999999999999988788999876543211 101111 010011122333333322211
Q ss_pred ccCCCceeEEEEeC----------CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 91 SENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 91 ~~~~~~~D~i~~d~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
..+..|+++... ...........+++.|||||++.+.|..
T Consensus 119 --~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 --APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred --CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 134556665421 1223345788889999999999887654
No 273
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.22 E-value=0.0021 Score=54.09 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
+..+.+++..++...+..+|.|..||+|......+..+.. ...+++.|.++..+..++.|.--++....+...++|.
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 4566777777777656678999999999988887776642 2679999999999999999988877754456666665
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCe---EEEEe
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGG---IAVYD 129 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG---~lv~~ 129 (187)
....... . ....++||+|+..+.. .....++.++...|+||| +++.+
T Consensus 251 l~~~~~~-~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 251 LSNPKHD-D-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccCCccc-c-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 4421110 0 0123679988654210 112457888899999865 55556
Q ss_pred CCCCCc
Q 029803 130 NTLWGG 135 (187)
Q Consensus 130 ~~~~~~ 135 (187)
+++..|
T Consensus 329 gvlfr~ 334 (489)
T COG0286 329 GVLFRG 334 (489)
T ss_pred CcCcCC
Confidence 666555
No 274
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=97.15 E-value=0.016 Score=40.50 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803 9 QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 86 (187)
Q Consensus 9 ~ll~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 86 (187)
..|...+..... .-|||+|-|.|.+=-.+-..+| +.+|+.+|-.-..-. ...++.-.++.||+.+.++.
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHH
Confidence 445555554433 4699999999999889999988 899999996422111 11233456999999998887
Q ss_pred HhhcccCCCceeEEEEeCCCcc---cHHH----HHHHHhccCCCeEEEEeCCCC
Q 029803 87 LLKYSENEGSFDYAFVDADKDN---YCNY----HERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 87 ~~~~~~~~~~~D~i~~d~~~~~---~~~~----~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+... +.+.-++..|....+ -..+ -..+.++|.|||+++...-+.
T Consensus 87 ~~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 87 LARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred HHhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 3222 456677777743211 1111 222347999999999876553
No 275
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.12 E-value=0.00061 Score=53.88 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHH-------HHHHHHHhcCCC-CcEEEE
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVD-HKINFI 76 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~-~~~~~~ 76 (187)
++..-+++.++...+++.|.|--.|||......|.. ++-|.+.|++-.++. ..+.|+++++.. .-+.++
T Consensus 194 AeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl 270 (421)
T KOG2671|consen 194 AELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL 270 (421)
T ss_pred hhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee
Confidence 344556677777888999999999999988777765 679999999877665 567899998865 446788
Q ss_pred EcchHHHHHHHhhcccCCCceeEEEEeCCC------------------------------cc------cHHHHHHHHhcc
Q 029803 77 ESEALSVLDQLLKYSENEGSFDYAFVDADK------------------------------DN------YCNYHERLMKLL 120 (187)
Q Consensus 77 ~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~------------------------------~~------~~~~~~~~~~~L 120 (187)
.+|.... .+. ....||.|++|... .. +-+.+....+.|
T Consensus 271 ~~D~sn~--~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L 344 (421)
T KOG2671|consen 271 TADFSNP--PLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL 344 (421)
T ss_pred eecccCc--chh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence 8887552 111 14689999999310 00 123455667899
Q ss_pred CCCeEEEE
Q 029803 121 KVGGIAVY 128 (187)
Q Consensus 121 ~~gG~lv~ 128 (187)
..||.+++
T Consensus 345 ~~ggrlv~ 352 (421)
T KOG2671|consen 345 VDGGRLVF 352 (421)
T ss_pred hcCceEEE
Confidence 99999987
No 276
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.06 E-value=0.0056 Score=46.30 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=70.6
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
++.++.+||-+|+++|.+...+..-..+.+-|+++|.++..=.......++ -.++-.+..|+....+..- .-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYRm----lVg 225 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYRM----LVG 225 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchheee----eee
Confidence 367888999999999999999988887789999999987543222222111 1345556667654221100 023
Q ss_pred ceeEEEEeCCCcccHHH-HHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNY-HERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~-~~~~~~~L~~gG~lv~~ 129 (187)
-.|+||.|..++..... .=++.--||+||-+++.
T Consensus 226 mVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 57999999766554443 33445689999988774
No 277
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.04 E-value=0.00026 Score=54.91 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=72.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
.+..|+|+.+|.||+++.+.-... ...|+++|.+|..++..+++++.+++..+..++.+|....-+ ....|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence 457899999999999994433333 578999999999999999999998887777777777654322 35778
Q ss_pred EEEEeCCCcccHHHHHHHHhccCCC-e-EEEEeCCC
Q 029803 99 YAFVDADKDNYCNYHERLMKLLKVG-G-IAVYDNTL 132 (187)
Q Consensus 99 ~i~~d~~~~~~~~~~~~~~~~L~~g-G-~lv~~~~~ 132 (187)
-|.+..-++.- .-.-.+.++|+|. | ++-++..+
T Consensus 265 rVnLGLlPSse-~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSE-QGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred heeeccccccc-cchHHHHHHhhhcCCcEEEEeccc
Confidence 88776433221 2223344677764 3 55555444
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.03 E-value=0.006 Score=49.20 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=69.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCCc
Q 029803 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS 96 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~ 96 (187)
++.+|+-+|+| .|..+..+++... ..+|+.+|.+++.++.|++.... ..+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence 44489999998 5777777888776 68999999999999999986421 11111111 2222222221 1247
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|++|-... ....++++.++++++|.+++-.+.
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 999886543 556889999999999999986554
No 279
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.00048 Score=54.63 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=65.3
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
...|++|||+|.|.|.-...+-..+|.-..++.+|.+|..-+.........+. ........|.......+ +....
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~l----p~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSL----PAADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCC----Cccce
Confidence 44788999999998876665556666446788888888665555443332221 11112222222211111 11356
Q ss_pred eeEEEEe------CCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVD------ADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d------~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+++++- .........++.+|.++.|||.+++-
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 7877653 23344566899999999999998873
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.034 Score=42.39 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=82.8
Q ss_pred HHHHHHHH----HHHHcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803 6 IHGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 78 (187)
Q Consensus 6 ~~~~ll~~----l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 78 (187)
..+++++. ++....+...+|+|+|+-.-+..+...+.+ -.+++.+|++...+...-+.+......-.+.-+++
T Consensus 61 tEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~ 140 (321)
T COG4301 61 TEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG 140 (321)
T ss_pred hHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh
Confidence 34445544 344678999999999999888888887753 26899999999888665555443222334667888
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEE
Q 029803 79 EALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|....+..+.+ .++-=++|+.. .+.....|+.++...|+||-++++
T Consensus 141 ~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 141 DYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred hHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 88777766531 23333455542 345567799999999999998887
No 281
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.93 E-value=0.003 Score=52.47 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=59.6
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...+-++|+|..+|.|.+++.|... .|..+-..|..-...-..+-..|+ +-+++ |-++.++.. +.
T Consensus 362 ~~~~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsTY------PR 426 (506)
T PF03141_consen 362 KWGRIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFSTY------PR 426 (506)
T ss_pred cccceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc---chhcc-chhhccCCC------Cc
Confidence 3445568999999999999888642 244444333211111111222232 22332 344444443 68
Q ss_pred ceeEEEEeCCC------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 96 SFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 96 ~~D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.||+|..++-. -.....+=++-++|+|+|.+++.|..
T Consensus 427 TYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 427 TYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred chhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 99999877422 12345666677999999999996554
No 282
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0025 Score=52.09 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=51.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
.+||||+|||-.+...+.+. .-.|+++|.-..|.+.|++...++|.+++++++...+.+
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 48999999999998888775 357999999999999999999999999999988866644
No 283
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.83 E-value=0.00021 Score=52.70 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=64.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
..|.++||+|+|.|-.+..++..+. +|++.|.|..|....+++ + ..++. ..+.... +-+|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~----ynVl~--~~ew~~t-------~~k~ 170 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----N----YNVLT--EIEWLQT-------DVKL 170 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----C----Cceee--ehhhhhc-------Ccee
Confidence 3568999999999999999987654 689999998887766643 2 11211 1233222 3579
Q ss_pred eEEEEeC---CCcccHHHHHHHHhccCC-CeEEEEeCCC
Q 029803 98 DYAFVDA---DKDNYCNYHERLMKLLKV-GGIAVYDNTL 132 (187)
Q Consensus 98 D~i~~d~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
|+|.+-. .+-+....++.++..|+| +|.+|+.-++
T Consensus 171 dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 171 DLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred ehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 9886421 123455678888999998 8887775444
No 284
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.0049 Score=46.26 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC--------CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH------HHH
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPE--------DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL------SVL 84 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~------~~~ 84 (187)
.-++++|+++..|.|+..+.+.+-. ..+++++|+++=. ... .+.-+++|+. .++
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHH
Confidence 3468999999999999998876621 1249999997531 222 2555666652 233
Q ss_pred HHHhhcccCCCceeEEEEeCCCcc-----c---------HHHHHHHHhccCCCeEEEEe
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDN-----Y---------CNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~-----~---------~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+ .+++.|+|++|+.+.. . ...+.-....|+|||.++..
T Consensus 109 ~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 433 4579999999975421 1 12344445799999999874
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.011 Score=41.38 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=73.6
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
...+..+.+|+|+|.|...+..++.. -..-+++|++|=....++-+.-+.++.....+...|.... . -.
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--d-------l~ 137 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--D-------LR 137 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--c-------cc
Confidence 34555789999999999988888763 2467899999988888887777788887788888776553 1 24
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|..+.+-+..+..++.-..+.-.+..|..++.
T Consensus 138 dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 566565555555555555556557778877765
No 286
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.68 E-value=0.0073 Score=41.09 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc
Q 029803 29 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 108 (187)
Q Consensus 29 g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~ 108 (187)
|.|..++.+|+... .+|+++|.++...+.+++. |...-+.....|..+.+..+. .+..+|+||-.. .
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~---g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCV---G 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TESEEEETTTSSHHHHHHHHT----TTSSEEEEEESS---S
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----ccccccccccccccccccccc----ccccceEEEEec---C
Confidence 46888999999874 8999999999887777653 422111112223444444442 125799887643 2
Q ss_pred cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 109 YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 109 ~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
....++.++++++++|.+++-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 356888999999999999986554
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=96.64 E-value=0.0071 Score=47.32 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh
Q 029803 8 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66 (187)
Q Consensus 8 ~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 66 (187)
.+|+..++.. .++..|||-.+|+|.+++...+. +.+.+++|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4677777764 46789999999999988766554 57999999999999999999864
No 288
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.64 E-value=0.064 Score=41.01 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803 6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 85 (187)
Q Consensus 6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 85 (187)
....++..+........ +..-+|+-..+..+.+ +.-+.+.+|+.|+-.+..++++.. ..++++++.|..+.+.
T Consensus 45 ~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~ 117 (245)
T PF04378_consen 45 ALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLK 117 (245)
T ss_dssp GGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHH
T ss_pred HHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhh
Confidence 34556666655554443 5566666655555544 477999999999999988888764 3579999999999877
Q ss_pred HHhhcccCCCceeEEEEeCCC---cccHHHHHHH---HhccCCCeEEEEeCC
Q 029803 86 QLLKYSENEGSFDYAFVDADK---DNYCNYHERL---MKLLKVGGIAVYDNT 131 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~---~~~~~~~~~~---~~~L~~gG~lv~~~~ 131 (187)
.+... .++--+|+||... .+|....+.+ ++.-..|-+++.--+
T Consensus 118 allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi 166 (245)
T PF04378_consen 118 ALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPI 166 (245)
T ss_dssp HH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEE
T ss_pred hhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeec
Confidence 76533 5567899999743 3455444444 444445555555433
No 289
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.0054 Score=51.26 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=73.0
Q ss_pred CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 20 AKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
...|.-+|.|.|-..-... .......+++++|-+|+++-..+. .......++++++.+|..++-+. .++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhh
Confidence 4568889999996554433 333346789999999998877665 23334467899999999876321 267
Q ss_pred eeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|+++.. ++-+-.++.++-+.+.|||+|+-|-
T Consensus 440 ~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 440 ADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 8988643 3455677888899999999988764
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.56 E-value=0.041 Score=44.85 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=68.6
Q ss_pred HHHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhcc
Q 029803 14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYS 91 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~ 91 (187)
+.+..++.+||.+|+|. |..+..+|+... ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~--- 250 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT--- 250 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc---
Confidence 34455778999999987 888888998864 346999999998888777642 21 112222221 222233321
Q ss_pred cCCCceeEEEEeCCC------------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803 92 ENEGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
....+|+|+-.... .+....++.+++.++++|.++.-.
T Consensus 251 -~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 -GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred -CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 23469977653211 112456788899999999988753
No 291
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.46 E-value=0.16 Score=39.30 Aligned_cols=111 Identities=7% Similarity=0.045 Sum_probs=67.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--CCcEEEEEcchHHHH-HHHhhcccCCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVL-DQLLKYSENEG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-~~~~~~~~~~~ 95 (187)
....|+.+|||.-.-...+ ..+.+.+++-+|. |+.++.-++.+...+. ..+.+++..|..+.+ ..+...+....
T Consensus 81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3567999999665444433 2233466666775 6677777777776543 357888988986433 33322111112
Q ss_pred ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
..-++++.+ ..+.....++.+.+...||+.|+++-+.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 233444443 2345567888888888899999997443
No 292
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.40 E-value=0.0057 Score=45.58 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=53.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCceeE
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDY 99 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~ 99 (187)
.++|||||=+....+.... --.|+.||++++- -.+.+.|..+. ++. .+.++||+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~-----~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPK-----NESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCC-----CcccceeE
Confidence 5899999976665543322 3469999998631 23444555442 221 13579999
Q ss_pred EEEeC------CCcccHHHHHHHHhccCCCeE
Q 029803 100 AFVDA------DKDNYCNYHERLMKLLKVGGI 125 (187)
Q Consensus 100 i~~d~------~~~~~~~~~~~~~~~L~~gG~ 125 (187)
|.+.. ++....+.++.+.+.|+|+|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 97662 345556789999999999999
No 293
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.07 Score=42.08 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
++.+|.-||.| .|..+..+|..+ ++.|+.+|.+.+.+......+ ..+++..-.+...+-... .+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~a 232 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKA 232 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhc
Confidence 44567777776 577888888876 589999999988877666555 346777777776665544 578
Q ss_pred eEEEEe---CCCcccHHHHHHHHhccCCCeEEE
Q 029803 98 DYAFVD---ADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 98 D~i~~d---~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+++-. .......-..+++.+.||||++|+
T Consensus 233 DlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 233 DLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred cEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 988643 334444556788889999999886
No 294
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.28 E-value=0.08 Score=44.85 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=66.3
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE--EE-------------cch
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEA 80 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--~~-------------~d~ 80 (187)
..++.+|+-+|+| .|..++..|+.+. ++|+++|.+++.++.+++. |.. .+.+ .. .+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhH
Confidence 3478999999998 5677778888774 5899999999988877752 321 1111 00 011
Q ss_pred HHHHHHHhhcccCCCceeEEEEeCCCcc--cHHH-HHHHHhccCCCeEEEEeCCC
Q 029803 81 LSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~ 132 (187)
.+....... .....+|++|-....+. .+.. .+++.+.++|||+++.-.+.
T Consensus 235 ~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 235 IKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 110011100 01246999887653322 2344 59999999999998875443
No 295
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.24 E-value=0.0078 Score=45.30 Aligned_cols=82 Identities=10% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEE-EcchHHHHHHHhhcccCCCc
Q 029803 20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFI-ESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~ 96 (187)
.-++||||+|.- .++=.-.. ..+.+.++.|+++..++.|+.++..+ ++...+++. +.|...+++.+.. .++.
T Consensus 79 ~i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~ 153 (292)
T COG3129 79 NIRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNER 153 (292)
T ss_pred ceEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---ccce
Confidence 346899998654 33322211 23679999999999999999999876 666667764 4444445554432 2689
Q ss_pred eeEEEEeCCC
Q 029803 97 FDYAFVDADK 106 (187)
Q Consensus 97 ~D~i~~d~~~ 106 (187)
||+..|+...
T Consensus 154 yd~tlCNPPF 163 (292)
T COG3129 154 YDATLCNPPF 163 (292)
T ss_pred eeeEecCCCc
Confidence 9999998643
No 296
>PRK13699 putative methylase; Provisional
Probab=96.20 E-value=0.022 Score=43.16 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=44.8
Q ss_pred HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc
Q 029803 9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67 (187)
Q Consensus 9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~ 67 (187)
+++..++. ..++..|||.-||+|.++....+. +.+.+++|++++..+.+.+++...
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 45666654 347789999999999988766654 568999999999999999888653
No 297
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.19 E-value=0.053 Score=43.36 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=59.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++++||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++ .|...-+.....+.. .+... .+.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~---~g~ 235 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE---KGY 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc---CCC
Confidence 356789988865 4556666777653 3479999999988877765 243211111111221 22111 245
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+|+||-... ....++.+.+.|+++|.++.-..
T Consensus 236 ~D~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 236 FDVSFEVSG---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 898774322 23456778899999999987543
No 298
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.18 E-value=0.4 Score=36.67 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
......++..+-..++... |..-+|+-..+..+.+. .-++..+|+.|+-....++++.. ..++++..+|....
T Consensus 74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~ 146 (279)
T COG2961 74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLA 146 (279)
T ss_pred hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHH
Confidence 4455667777766666655 77788887777666653 67999999999999999999862 45799999999887
Q ss_pred HHHHhhcccCCCceeEEEEeCCCc---ccHHHH---HHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHH
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKD---NYCNYH---ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 157 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~---~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (187)
+...+.. .++--+|++|...+ +|.... ++.++-...|-+.+.--+. ..+.++
T Consensus 147 l~a~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik-------------------~r~~~~ 204 (279)
T COG2961 147 LKAHLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIK-------------------DRRQIR 204 (279)
T ss_pred HhhhCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeec-------------------chHHHH
Confidence 6665432 56778999997543 344433 3334444455555543222 334578
Q ss_pred HHHHHhhcC
Q 029803 158 DLNRSLADD 166 (187)
Q Consensus 158 ~~~~~l~~~ 166 (187)
+|.+.+...
T Consensus 205 ~f~~~L~~~ 213 (279)
T COG2961 205 RFLRALEAL 213 (279)
T ss_pred HHHHHHhhc
Confidence 888887754
No 299
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.14 E-value=0.029 Score=42.91 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH-----HhcCCCCcEE---EEEcchHHHHHHHhhc
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-----KKAGVDHKIN---FIESEALSVLDQLLKY 90 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-----~~~~~~~~~~---~~~~d~~~~~~~~~~~ 90 (187)
++.+|||+|+|+|..++.+|... ...|+..|. +...+..+.+. ....+...+. +.-+++.+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 56789999999998888777754 578888886 33333333332 2222222233 233444333222
Q ss_pred ccCCCc-eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 91 SENEGS-FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 91 ~~~~~~-~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+. +|+|+... ..+.......-+..+|..++.+.+.
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 233 89998653 3455667777788899999966554
No 300
>PRK13699 putative methylase; Provisional
Probab=96.11 E-value=0.013 Score=44.31 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=39.1
Q ss_pred EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc------------------ccHHHHHHHHhccCCCeEEEE
Q 029803 73 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+++++|+.+.++.+ .++++|+|+.|+... -....++++.++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468899999988876 368999999995321 013467888899999998875
No 301
>PRK11524 putative methyltransferase; Provisional
Probab=96.07 E-value=0.018 Score=45.08 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=40.2
Q ss_pred cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc------c---------c----HHHHHHHHhccCCCeEEEEe
Q 029803 72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------N---------Y----CNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~------~---------~----~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+++++|+.+.+..+ ..++||+|++|.... . + ...+.++.++|+|||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKI-----PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhc-----ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4679999999987765 257999999996321 0 1 24678888999999999874
No 302
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.00 E-value=0.018 Score=39.31 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=38.3
Q ss_pred cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-C----cc-cHHHHHHHHhccCCCeEEEE
Q 029803 72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-K----DN-YCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-~----~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+++..+|+.+.++.+ ...+|+||.|+- + +. ..++++.+.+++++||++..
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 4678999999998886 479999999962 1 11 35789999999999999976
No 303
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.99 E-value=0.1 Score=41.24 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=61.8
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++.+||..|+| .|..++.+|+.. +.++++++.+++..+.+++ .+....+.....+..+.+ ... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence 4566788888865 477788888875 5689999998887776643 343221111111222222 111 245
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++-... ....++.+++.|+++|.++.-
T Consensus 232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 7997764321 245678889999999999864
No 304
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.97 E-value=0.031 Score=45.07 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHH
Q 029803 7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL 61 (187)
Q Consensus 7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 61 (187)
..+++..+......+.++|+|+|.|+.+..++-.+ +..|++||-+....+.|+
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 35677888888889999999999999999998775 689999999876666554
No 305
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.88 E-value=0.023 Score=42.37 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=63.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcchHHHHHHHHHhcC---C-------------------------
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAG---V------------------------- 69 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~---~------------------------- 69 (187)
.|-++.|-+||+|+....+....+.. .+|++-|+++++++.|++|+.... +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 56689999999999888777654422 589999999999999988874322 0
Q ss_pred -------------CCcEEEEEcchHHHHH--HHhhcccCCCceeEEEEeC-------CCc-----ccHHHHHHHHhccCC
Q 029803 70 -------------DHKINFIESEALSVLD--QLLKYSENEGSFDYAFVDA-------DKD-----NYCNYHERLMKLLKV 122 (187)
Q Consensus 70 -------------~~~~~~~~~d~~~~~~--~~~~~~~~~~~~D~i~~d~-------~~~-----~~~~~~~~~~~~L~~ 122 (187)
..-..+.+.|.++.-. .. . .....|+|+.|. |.. ....+++.+.+.|.+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~---~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-D---AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-H---TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhh-c---cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence 0113455555554211 11 1 123468888883 111 134688888999987
Q ss_pred CeEEEEeC
Q 029803 123 GGIAVYDN 130 (187)
Q Consensus 123 gG~lv~~~ 130 (187)
++++++.+
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 78887743
No 306
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.86 E-value=0.26 Score=36.05 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=65.0
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+|--||. |+.++.+|..+. .+.+|+++|++++.++..++- +++.....+..+. .|..+.+
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 5566665 444444443332 257999999999877655431 1110001122222 2222221
Q ss_pred hcccCCCceeEEEEeCC----------CcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHH
Q 029803 89 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD 158 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (187)
...|++|+... ........+.+.+.++++.++++..+...|. ....++.
T Consensus 75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt---------------t~~~~~~ 133 (185)
T PF03721_consen 75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT---------------TEELLKP 133 (185)
T ss_dssp ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH---------------HHHHHHH
T ss_pred ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee---------------ehHhhhh
Confidence 34688887531 1224566778889999999999988887663 2224556
Q ss_pred HHHHhhcC-CCeEEEeee
Q 029803 159 LNRSLADD-PRVQLSHVA 175 (187)
Q Consensus 159 ~~~~l~~~-~~~~~~~lp 175 (187)
+.+..... .+|.....|
T Consensus 134 ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 134 ILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp HHHHHCCTTTCEEEEE--
T ss_pred hhhhhcccccCCeEEECC
Confidence 66654432 567777666
No 307
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.79 E-value=0.12 Score=41.50 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=61.4
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++.+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++ .+...-+.....+..+.+.... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence 4567889988864 3455666777653 2359999998887777753 3432112222223333333321 124
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+|+|+ |..- ....++.+++.++++|.+++-..
T Consensus 245 g~d~vi-d~~g--~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVI-DAVG--RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEECC
Confidence 689776 3321 23456778899999999987543
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.77 E-value=0.029 Score=37.41 Aligned_cols=89 Identities=19% Similarity=0.082 Sum_probs=58.5
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC
Q 029803 28 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA 104 (187)
Q Consensus 28 ~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~~d~ 104 (187)
||.|..+..+++.+.+.. +|+.+|.+++..+.+++. .+.++.||+.+ .+... .-.+.+.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERA-----GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhc-----CccccCEEEEcc
Confidence 566788888888775455 899999999987766643 26688899865 34443 235789888875
Q ss_pred CCcccHHHHHHHHhccCCCeEEEEe
Q 029803 105 DKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 105 ~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
......-..-...+.+.|...+++.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4433333334445677777777763
No 309
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.66 E-value=0.15 Score=40.76 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=57.3
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.++.+||-+|+| .|..+..+++. .. ..+|+++|.+++.++.+++ .+. .... + +. .. ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~ 221 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DL 221 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------cc
Confidence 467899999975 23344555654 33 4689999999888877764 221 1111 1 11 11 13
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+|+||=..........++.++++|+++|.+++-.
T Consensus 222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 58977733222224557888899999999998744
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.65 E-value=0.1 Score=44.11 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=59.9
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE---------------EEcchH
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF---------------IESEAL 81 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~d~~ 81 (187)
.++.+++-+|+| .|..+..+++.+ +.+|+.+|.+++.++.++. .+.. .+++ ...+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence 367899999997 456677777776 4679999999987766664 2321 1111 111111
Q ss_pred HHHHHHhhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEE
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.......+ .-..+|+||... ..+...-..+.+.+.+|||++++=
T Consensus 235 ~~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 100111100 135799997654 222323356777899999998773
No 311
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.65 E-value=0.093 Score=44.96 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=64.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch----HH-HHHHHhhcc
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA----LS-VLDQLLKYS 91 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~-~~~~~~~~~ 91 (187)
+.+...|||+||..|.|....++.+|.++-|+++|+-|-. ..+ ++..++.|+ +. .+.....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~-~c~t~v~dIttd~cr~~l~k~l~-- 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP-NCDTLVEDITTDECRSKLRKILK-- 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC-ccchhhhhhhHHHHHHHHHHHHH--
Confidence 4577889999999999999999999988999999987631 111 222222232 22 2233322
Q ss_pred cCCCceeEEEEeCCCcc--------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 92 ENEGSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
..+.|+|+.|+.+.- ....++.+...|..||.++ ..++.
T Consensus 108 --t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv-tkvfr 160 (780)
T KOG1098|consen 108 --TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV-TKVFR 160 (780)
T ss_pred --hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc-ccccc
Confidence 256799999975421 1234555567889999944 44553
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.56 E-value=0.17 Score=40.88 Aligned_cols=100 Identities=24% Similarity=0.355 Sum_probs=59.9
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
..++.+||-.|+| .|..+..+|+.. +. +|+++|.+++..+.+++ .+...-+.....+..+.+..+. .
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~ 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----G 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence 4567788888864 345566677764 44 69999999988777754 3432111111122222222221 2
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+.+|+||-.. .....++.+++.++++|.++.-.
T Consensus 258 ~g~d~vid~~---G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFEMA---GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCCEEEECC---CChHHHHHHHHHHhcCCEEEEEc
Confidence 3689877432 12346777889999999988744
No 313
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.54 E-value=0.15 Score=41.46 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=56.3
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
++.+|+-+|+| .|..++..+..+ +.+|+.+|.+++..+.+...+ +. .+.....+. +.+... -..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH------HccC
Confidence 56789999987 566666666665 458999999887665544433 21 122222222 222332 1578
Q ss_pred eEEEEeCC---CcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+.... .....-.-+...+.++++++++-
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 99987531 11121123566677899987764
No 314
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.53 E-value=0.023 Score=43.68 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHHHHHHHHh
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK 66 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~ 66 (187)
+-+|+|+|+|.|..+..++..+.. ..+++.+|.||...+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 468999999999999998887752 35899999999999888888765
No 315
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.45 E-value=0.31 Score=39.15 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~ 92 (187)
...++.+||-.|+ +.|..++.+|+.. +.++++++.+++..+.+++. .+...-+..... +..+.+....
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---- 225 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF---- 225 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC----
Confidence 3556789999986 4777888888875 56899998888766655532 343221211111 3333333321
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+.+|++| |..- ...+..+++.|+++|.++.-.
T Consensus 226 -~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 -PEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEEC
Confidence 24689887 3322 246778889999999998643
No 316
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.41 E-value=0.28 Score=37.16 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=60.9
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++. +....+.....+....+. . ...+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~----~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-L----TGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-H----hcCCC
Confidence 6778999999885 76777777765 47899999988766665432 322111111122222211 1 12467
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|+++..... ...++.+++.|+++|.++.-
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEE
Confidence 9998854322 14567778899999998864
No 317
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.048 Score=42.96 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCC-------CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH---------------
Q 029803 8 GQLMAMLLRLVNA-------KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK--------------- 65 (187)
Q Consensus 8 ~~ll~~l~~~~~~-------~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--------------- 65 (187)
..++..|-.+.++ -+||--|||.|..+..++.... .+-+=|.+--|+-...=.+.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 4566666665554 4799999999999999987533 11111322222211111110
Q ss_pred ------------------------hcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE----EeCCCcccHHHHHHHH
Q 029803 66 ------------------------KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLM 117 (187)
Q Consensus 66 ------------------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~----~d~~~~~~~~~~~~~~ 117 (187)
.++......+..||..+..+.- ...+.||+|+ +| ...+..++++.+.
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s----~~~~~~d~VvTcfFID-Ta~NileYi~tI~ 283 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS----SGAGSYDVVVTCFFID-TAHNILEYIDTIY 283 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCc----CCCCccceEEEEEEee-chHHHHHHHHHHH
Confidence 1111122333445554433321 1124799884 44 3567889999999
Q ss_pred hccCCCeEEEEeCC
Q 029803 118 KLLKVGGIAVYDNT 131 (187)
Q Consensus 118 ~~L~~gG~lv~~~~ 131 (187)
..|+|||+.|=-..
T Consensus 284 ~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 284 KILKPGGVWINLGP 297 (369)
T ss_pred HhccCCcEEEeccc
Confidence 99999999875433
No 318
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.29 E-value=0.035 Score=43.30 Aligned_cols=69 Identities=12% Similarity=-0.016 Sum_probs=49.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
+++|+.||.|..+.-+.... -..+.++|+++.+++..++|+... ++++|..+....-. ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence 68999999999988777642 245788999999999888886321 55667665432200 25799998
Q ss_pred EeC
Q 029803 102 VDA 104 (187)
Q Consensus 102 ~d~ 104 (187)
.+.
T Consensus 68 ~gp 70 (275)
T cd00315 68 GGF 70 (275)
T ss_pred eCC
Confidence 774
No 319
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=95.29 E-value=0.043 Score=38.70 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.5
Q ss_pred EEccccc--HHHHHHH-hhCCCCCEEEEEeCCcchHHHHHHH--HHhc
Q 029803 25 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA 67 (187)
Q Consensus 25 eiG~g~G--~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~ 67 (187)
|||+..| .++..++ +...++.+++++|++|..++..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6666554 2344478999999999999999998 5544
No 320
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.15 E-value=0.48 Score=37.96 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=60.6
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++.+|+-+|+|. |..++.+|+.. +.+++++|.+++.++.+++ .+....+.....+..+........ ....
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~ 236 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKAR 236 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccC
Confidence 45678999999854 66677777775 4589999999988777754 243211211111111222221110 0123
Q ss_pred ceeE---EEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~---i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+|. +++|.. .....++.+++.|++||.+++-..
T Consensus 237 g~d~~~d~v~d~~--g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 237 GLRSTGWKIFECS--GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCCCCcCEEEECC--CChHHHHHHHHHHhcCCeEEEECc
Confidence 4551 344432 223466778899999999987544
No 321
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.12 E-value=0.016 Score=47.23 Aligned_cols=66 Identities=21% Similarity=0.129 Sum_probs=57.6
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHH
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 85 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~ 85 (187)
..++..|.|+.||.|-.++.++.. +++|++-|++|++++..+.++..+.+.+. ++++..|+.+++.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 346778999999999999888874 68999999999999999999988877755 9999999988774
No 322
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.01 E-value=0.38 Score=38.40 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=59.6
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++.+||-.|+| .|..+..+|+... ...+++++.+++..+.+++ .+...-+.....+ .+.+..+. ...
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~----~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL----REL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh----cCC
Confidence 3467788888864 3455566777653 2347889988887776643 3432111111112 22222221 124
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+|.+++|..- ....+..+.+.|++||.+++-..
T Consensus 228 ~~d~~v~d~~G--~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLILETAG--VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEEECCC--CHHHHHHHHHHhhcCCEEEEEcc
Confidence 68856666422 23467888899999999987543
No 323
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.95 E-value=0.6 Score=37.07 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
...++.+||-+|+| .|..++.+++.. +.+ +++++.+++..+.+++ .+...-+.....+ .+.+..+. .
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~ 228 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----S 228 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----C
Confidence 34567889888864 344556677765 455 9999988887776643 2432111111112 22222221 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
...+|++|-... ....+..+++.|+++|.+++-.
T Consensus 229 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSG---NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 347998874322 2335567788999999998643
No 324
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.95 E-value=0.45 Score=38.86 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=61.1
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----cC-
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----EN- 93 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~- 93 (187)
.+|--||- ||.++.+|..+.. +.+|+++|+++..++...+ | ...+..-+..+.+......+ ..
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 45666665 6666665554432 5799999999887764432 1 23333333333233322111 00
Q ss_pred --CCceeEEEEeC------CC----cccHHHHHHHHhccCCCeEEEEeCCCCCcc
Q 029803 94 --EGSFDYAFVDA------DK----DNYCNYHERLMKLLKVGGIAVYDNTLWGGT 136 (187)
Q Consensus 94 --~~~~D~i~~d~------~~----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
-...|++++.. .. +......+.+.+.|++|-++++..+.++|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 12567766542 11 122345666779999999999999998773
No 325
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.88 E-value=0.61 Score=36.68 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=62.7
Q ss_pred HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
.+..++.+||-.| .+.|..++.+|+.. +.++++++.+++..+.+++ .+...-+.....+..+.+...
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~----- 207 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA----- 207 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH-----
Confidence 3455778888887 45777888888875 5689999888877666654 343221221122333333332
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
....+|+|+ |... ...++.+++.|+++|.++.-
T Consensus 208 ~~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 208 APDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence 125699777 4322 24567888999999998863
No 326
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.12 Score=41.57 Aligned_cols=49 Identities=20% Similarity=0.055 Sum_probs=39.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHHHHHHHHhcC
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKAG 68 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~ 68 (187)
+-.++|||+|.|.....+++.+. ...++..||+|++....-+++++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45799999999999888877652 25799999999999888888876543
No 327
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.82 E-value=0.48 Score=37.89 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=65.9
Q ss_pred HHHHHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803 12 AMLLRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 89 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (187)
....+..++++||-.|. |-|..++.+|+.+. ..++.+--+++..+.+ ...+...-+.....|..+.+.++.
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t- 207 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT- 207 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc-
Confidence 33344667899999994 45678888999864 3666666555444433 334544334445555555555442
Q ss_pred cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+..+|+|+-. .-...+......|+++|.++.-..
T Consensus 208 ---~g~gvDvv~D~----vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 ---GGKGVDVVLDT----VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ---CCCCceEEEEC----CCHHHHHHHHHHhccCCEEEEEec
Confidence 23479988753 233456667889999999887433
No 328
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.80 E-value=0.89 Score=35.22 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=59.0
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++++||-+|+| .|..++.+|+... ..+|+.+|.+++..+.+++ .+...-+. ..+..+.+..+. ....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~----~~~g 187 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQ----NGRG 187 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHh----CCCC
Confidence 366789988864 4556666777653 2348889988887776655 34321111 111112222221 1246
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|+++-... ....++.+.+.++++|.++.-...
T Consensus 188 ~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 188 VDVALEFSG---ATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCEEEECCC---ChHHHHHHHHHhcCCCEEEEeccC
Confidence 898774321 234677788999999999875443
No 329
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.71 E-value=0.7 Score=36.93 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=62.0
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++ .+....+.....+..+.+..+. ..
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG 233 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence 35567888888765 4566677777654 3368999988877666653 3432212221223223232221 13
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
..+|+++-.... ...+..+++.|+++|.++.-..
T Consensus 234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 569987753221 3467888899999999886443
No 330
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.034 Score=44.82 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 89 (187)
Q Consensus 10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (187)
+..+++.-.++.+|+|++|..|..|..+|......++++++|.+++..+..++.+...|.. .++...+|+... ....
T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~- 280 (413)
T KOG2360|consen 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE- 280 (413)
T ss_pred chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc-
Confidence 3455566667889999999999999999998876899999999999999999999988876 466678887664 2211
Q ss_pred cccCCCceeEEEEeC
Q 029803 90 YSENEGSFDYAFVDA 104 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~ 104 (187)
.-+..-.|++|+
T Consensus 281 ---~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 281 ---KFRDVTYILVDP 292 (413)
T ss_pred ---cccceeEEEeCC
Confidence 113455677764
No 331
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.60 E-value=0.69 Score=36.54 Aligned_cols=109 Identities=11% Similarity=0.149 Sum_probs=70.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--CCcEEEEEcchH-H-HHHHHhhcccCCC
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEAL-S-VLDQLLKYSENEG 95 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~-~-~~~~~~~~~~~~~ 95 (187)
-..|+.+|||-- +...--..+++.+++-+|+ |+.++.=++.++..+. +.+.+++..|.. + +...+.+.+....
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 578999999544 3333222233577888886 8888888888877553 246889999987 3 4444543221223
Q ss_pred ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.--++++.+ ..+....+++.+..++.||..++++..
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 333444443 345566789999999999988888643
No 332
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.55 E-value=0.39 Score=37.39 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=69.0
Q ss_pred CCCEEEEEcccccHHHHHH-HhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 19 NAKKTIEIGVFTGYSLLLT-ALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l-a~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.++.|+-+|-. --+++.+ +..+| .+|..+|+++..++...+-.+..|+. +++.+.-|....+++-. .++|
T Consensus 152 ~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kF 222 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKF 222 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhC
Confidence 56779998833 3333333 33333 58999999999999999999998875 48888888887666532 4799
Q ss_pred eEEEEeCCC--cccHHHHHHHHhccCCC---eEEEE
Q 029803 98 DYAFVDADK--DNYCNYHERLMKLLKVG---GIAVY 128 (187)
Q Consensus 98 D~i~~d~~~--~~~~~~~~~~~~~L~~g---G~lv~ 128 (187)
|+++-|+.. .....|+.+=...||.- |++-+
T Consensus 223 DvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 223 DVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred CeeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 988887532 22344555555677765 56544
No 333
>PLN02740 Alcohol dehydrogenase-like
Probab=94.51 E-value=0.75 Score=37.41 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=60.2
Q ss_pred HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcc
Q 029803 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS 91 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~ 91 (187)
....++.+||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++ .+....+.... .+..+.+..+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence 345677899999865 3445566676653 2369999999888887754 34322121111 11223333321
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 130 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 130 (187)
.+.+|+|+-... ....++.++..++++ |.+++-.
T Consensus 266 --~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 --GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred --CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEc
Confidence 226997764322 235667777888886 8877643
No 334
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.51 E-value=0.74 Score=36.58 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=58.9
Q ss_pred CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 21 KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 21 ~~vLeiG~--g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+||-.|+ +.|..++.+|+.. +. +|++++.+++..+.+++. .|....+.....+..+.+..+. ...+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv 225 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV 225 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence 78988885 5777888888875 45 799998888766665543 3433212211223333333331 2569
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+ |.... ..++.+++.|+++|.++.
T Consensus 226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYF-DNVGG---EISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEE-ECCCc---HHHHHHHHHhccCCEEEE
Confidence 9887 43221 235778899999999886
No 335
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.46 E-value=1.1 Score=35.34 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029803 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS 91 (187)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~ 91 (187)
....++.+||-.|. +.|..++.+|+.. +.++++++.+++..+.+++ .+...-+..... +..+.....
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---- 203 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---- 203 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence 44567789998883 5777888888875 5689988888876666643 343211111111 222222222
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.+|+++ |..- ...++.+++.|+++|.++.-
T Consensus 204 -~~~gvdvv~-d~~G---~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 -SPDGYDCYF-DNVG---GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred -CCCCeEEEE-ECCC---HHHHHHHHHHhCcCcEEEEe
Confidence 124699887 4322 13457888999999999864
No 336
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.43 E-value=0.99 Score=35.89 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=63.0
Q ss_pred HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029803 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS 91 (187)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~ 91 (187)
.+..++.+||-.|+ +.|..++.+|+.. +.++++++.+++..+.+++. .+...-+..... +..+.+....
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~--- 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF--- 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---
Confidence 34567789999885 5677888888875 56888888888776666543 243221211111 3323333321
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+|+ |..- ...+..+++.|+++|.++.-
T Consensus 219 --~~gvd~v~-d~~g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 --PNGIDIYF-DNVG---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred --CCCcEEEE-ECCC---HHHHHHHHHHhccCcEEEEe
Confidence 25799887 4322 24577888999999998863
No 337
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.16 E-value=1.2 Score=33.05 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=45.8
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+|+-+|||. |...+..+.... -++++.+|.+. ...+.+.+++...+-.-+++.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 44678899999973 443333333322 46899999762 2344555566554433334444
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803 77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
...... .+..+ -..+|+|+...+.
T Consensus 97 ~~~i~~~~~~~~------~~~~D~Vi~~~d~ 121 (202)
T TIGR02356 97 KERVTAENLELL------INNVDLVLDCTDN 121 (202)
T ss_pred hhcCCHHHHHHH------HhCCCEEEECCCC
Confidence 444322 22333 2679988765443
No 338
>PLN02827 Alcohol dehydrogenase-like
Probab=94.16 E-value=0.85 Score=37.11 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~ 92 (187)
+..++.+||-.|+| .|..++.+|+... ...++++|.+++..+.+++ .+...-+.... .+..+.+..+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---- 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence 35567899988864 3445566676653 2368889988887776643 34321111111 12222233321
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 130 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 130 (187)
.+.+|+|+-.. .....+..+++.+++| |.+++-.
T Consensus 261 -~~g~d~vid~~---G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 -GGGADYSFECV---GDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred -CCCCCEEEECC---CChHHHHHHHHhhccCCCEEEEEC
Confidence 23689777432 2233567778899998 9998643
No 339
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.10 E-value=0.88 Score=37.65 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=57.1
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++++|+-+|+|. |......++.. +.+|+.+|.++...+.|++ .|. +.. +..+ .+ ..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v-------~~ 257 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV-------KE 257 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH-------cC
Confidence 4688999999984 55555566654 5689999999987776654 232 111 1112 11 45
Q ss_pred eeEEEEeCCCcccHHHHHHH-HhccCCCeEEEEeC
Q 029803 97 FDYAFVDADKDNYCNYHERL-MKLLKVGGIAVYDN 130 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~-~~~L~~gG~lv~~~ 130 (187)
.|+|+... .....+... .+.+++||+++.-.
T Consensus 258 aDVVI~at---G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 258 GDIFVTTT---GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 79887643 233455554 79999999997643
No 340
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.03 E-value=1.3 Score=36.21 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=56.0
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 22 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+|--+|+ ||.++..+..+.+ +..|+++|++++.++..++. +.++....|.++.. |....+
T Consensus 2 kI~viGt--GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a~---- 74 (414)
T COG1004 2 KITVIGT--GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEAV---- 74 (414)
T ss_pred ceEEECC--chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHHH----
Confidence 4555665 5544443333322 46899999999887766532 22211122233322 322221
Q ss_pred hcccCCCceeEEEEeCC-C---------cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 89 KYSENEGSFDYAFVDAD-K---------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~-~---------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
...|++|+... + .......+.+.+.++..-++|...+...|
T Consensus 75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 34688887631 1 12234566667888888888887777555
No 341
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.93 E-value=0.57 Score=37.24 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=62.5
Q ss_pred HcCCCEEEEEc-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIG-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..+++++--+| .|-|..+..+|+++ +.+|+++|.+...-+.+- +.+|.+..+... .|. +..+.+ .+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~---~~LGAd~fv~~~-~d~-d~~~~~------~~ 245 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAI---KSLGADVFVDST-EDP-DIMKAI------MK 245 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHH---HhcCcceeEEec-CCH-HHHHHH------HH
Confidence 34677777777 45899999999998 589999999876555444 444544322222 132 333333 24
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
..|.++-... .-....++.+.++||++|.+++-..
T Consensus 246 ~~dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 246 TTDGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred hhcCcceeee-eccccchHHHHHHhhcCCEEEEEeC
Confidence 5565543211 1133456778899999999998543
No 342
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.87 E-value=0.13 Score=37.02 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=31.5
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 62 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 62 (187)
..+|.+|+-+|.| .|..++.++..+ +.+++.+|..+...+..+.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence 4578899999988 567778888887 4799999998776554443
No 343
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.86 E-value=0.83 Score=36.26 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=58.9
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
+..++.+||..|+| .|..++.+|+... ..++++++.+++..+.+++ .+....+.....+..+.+.... ..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~ 234 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence 34566788887764 4667777888753 2478888877766655543 2321111112222223333321 23
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+.+|+++-... ....++.+++.|+++|.++.-
T Consensus 235 ~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVG---FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccC---CHHHHHHHHHHhhcCCEEEEE
Confidence 57998874221 124677788999999998853
No 344
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.84 E-value=1.2 Score=35.29 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=62.1
Q ss_pred HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
.+..++.+||-.|+|. |..++.+|+.. +.+++++..+++..+.+++ .+....+.....+..+.+..+. .
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~ 224 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D 224 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence 3455777899988763 67778888875 5788888877776665543 2322212222223333333331 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...+|+++-... -...+..+++.|+++|.++.
T Consensus 225 ~~~vd~vld~~g---~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATG---NPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence 346998875422 13456778899999998875
No 345
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.73 E-value=1.1 Score=35.78 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
...++.+||-.|+| .|..+..+|+.. +.++++++.+++..+.+++ .|... ++... +. ..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~---------~~ 221 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGGAY--DT---------PP 221 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecccc--cc---------Cc
Confidence 34567899999864 445556677764 5689999998887766654 34321 11100 10 02
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+.+|+++..... ...+....+.|+++|.+++-..
T Consensus 222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 457876543211 3467888899999999987543
No 346
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=93.70 E-value=1.4 Score=35.09 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=57.8
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++.+||-.|+| .|..++.+++... ..++++++.+++....+++ .+....+.....+....+..+. ...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence 4566777776653 3345555666653 2678888887766655543 3432222322233333333332 134
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+|+++- .. .....++.+++.|+++|.++.
T Consensus 235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVIE-AV--GIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEE
Confidence 6998873 32 223457888899999999885
No 347
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.65 E-value=2.9 Score=33.15 Aligned_cols=97 Identities=23% Similarity=0.165 Sum_probs=53.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.++++|+-+|+ |..+..++..+. ...+|+.++.+++......+. .+. .... ..+....+ .
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~---~g~----~~~~--~~~~~~~l-------~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE---LGG----NAVP--LDELLELL-------N 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---cCC----eEEe--HHHHHHHH-------h
Confidence 46889999998 444444444332 135799999987654333222 232 2221 11222222 4
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.+|+||.......+...++.+.+....++.+++|-..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 6899998755444434445554444346788886554
No 348
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.63 E-value=0.063 Score=41.68 Aligned_cols=92 Identities=22% Similarity=0.146 Sum_probs=61.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.....++|+|||.|-.+. . .+...+.++|++...+..+++. +...+..+|+..... ...+|
T Consensus 44 ~~gsv~~d~gCGngky~~---~--~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~-------~~~s~ 104 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---V--NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPF-------REESF 104 (293)
T ss_pred CCcceeeecccCCcccCc---C--CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCC-------CCCcc
Confidence 346679999999995431 1 1367899999988877766543 112566677765422 35789
Q ss_pred eEEEEeCCC------cccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADK------DNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.++.-+.. ......++++.+.++|||-..+
T Consensus 105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 988754321 2234578999999999998665
No 349
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.62 E-value=0.41 Score=39.16 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=46.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCc
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS 96 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~ 96 (187)
++||-|||| ..+...|..+.. ..+|+..|.+++..+.+..... .+++....|+.+. +..+. ..
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~ 68 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD 68 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence 579999994 444443333221 3799999999887777765532 2677877777553 33443 45
Q ss_pred eeEEEEeCCC
Q 029803 97 FDYAFVDADK 106 (187)
Q Consensus 97 ~D~i~~d~~~ 106 (187)
+|+|+.-...
T Consensus 69 ~d~VIn~~p~ 78 (389)
T COG1748 69 FDLVINAAPP 78 (389)
T ss_pred CCEEEEeCCc
Confidence 6988865433
No 350
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.54 E-value=0.63 Score=37.33 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=57.2
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
.++.+||-+|+| .|..+..+|+.. +.++++++. +++..+.++ ..+.. .+.....+..+ .. .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-------~ 235 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-------L 235 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-------h
Confidence 467889999875 356677777775 458999986 455555444 33432 12111111111 11 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
...+|+||-... ....+..+.+.|+++|.+++-..
T Consensus 236 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 236 VGEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence 257897775432 22367788899999999887443
No 351
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.50 E-value=3.6 Score=34.78 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=55.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHh---cCCC-------CcEEEEEcchHHHHHHH
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK---AGVD-------HKINFIESEALSVLDQL 87 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~---~~~~-------~~~~~~~~d~~~~~~~~ 87 (187)
++|.-||+|.... .+|..+.. +.+|+++|.+++.++..++.... .++. .+.-....|..+.
T Consensus 2 m~I~ViG~GyvGl--~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~---- 75 (473)
T PLN02353 2 VKICCIGAGYVGG--PTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH---- 75 (473)
T ss_pred CEEEEECCCHHHH--HHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH----
Confidence 3577787755443 33333321 36799999999887765432100 0000 0001111122111
Q ss_pred hhcccCCCceeEEEEeCC-Cc--------------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 88 LKYSENEGSFDYAFVDAD-KD--------------NYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~-~~--------------~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
-...|++|+... +. ......+.+.+.|++|-++++..+...|
T Consensus 76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 135688877521 11 2344566677888998888888777666
No 352
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.41 E-value=0.81 Score=31.26 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803 10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 89 (187)
Q Consensus 10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (187)
+...+++..+..+|+|+|-|.=......++.. +..|+++|+.+. +.. ..+.++..|..+.-..+
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i-- 67 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI-- 67 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH--
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH--
Confidence 44445556677899999998665443333322 579999999987 111 23667777876632222
Q ss_pred cccCCCceeEEEEeCCCcccHHHHHHHHhccCC
Q 029803 90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 122 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~ 122 (187)
=...|+|+.-..+...+..+-.+.+.+.-
T Consensus 68 ----Y~~a~lIYSiRPP~El~~~il~lA~~v~a 96 (127)
T PF03686_consen 68 ----YEGADLIYSIRPPPELQPPILELAKKVGA 96 (127)
T ss_dssp ----HTTEEEEEEES--TTSHHHHHHHHHHHT-
T ss_pred ----hcCCcEEEEeCCChHHhHHHHHHHHHhCC
Confidence 15789999887777776666666554443
No 353
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.36 E-value=0.52 Score=37.14 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=54.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.+++++|-+|+| .|..++.+|+... ...++++|.+++.++.+.+. . ++ +..+. . ...
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g 200 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRD 200 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCC
Confidence 356688888865 5667777887754 33477788877766554421 1 11 11110 0 256
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|+||-.. .....++.+.+.++++|.+++-.
T Consensus 201 ~Dvvid~~---G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 201 YRAIYDAS---GDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCEEEECC---CCHHHHHHHHHhhhcCcEEEEEe
Confidence 89777432 22346678889999999998743
No 354
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.34 E-value=0.86 Score=32.27 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=57.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC------CCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
+|.-||+|.+.+++....... +.+|+....+++.++..++.-.... ++.++.+ ..|..+.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence 356678876665544333222 4589999999887776665432111 1123433 44554432 4
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..|+|++.-.......+++++.+.++++-.++.
T Consensus 69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 679999977777778899999999988777775
No 355
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.27 E-value=2 Score=34.72 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=59.7
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~ 92 (187)
...++.+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++ .+...-+.... .+..+.+..+.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 252 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---- 252 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence 34567889998875 3556667777653 2379999999888777754 24321111111 11222222221
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 130 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 130 (187)
.+.+|+++-... ....+..+++.++++ |.++.-.
T Consensus 253 -~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 -DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred -CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEe
Confidence 236897764322 234667788899886 8877643
No 356
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.22 E-value=0.31 Score=38.54 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=54.3
Q ss_pred CEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC----CcEEEEEcchHHHHHHHhhcccCC
Q 029803 21 KKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 21 ~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
.+|+-+|+| .|+.+..|++. +..|+.++.+++.++..++. .|+. .....+...... + ...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~------~~~ 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--A------DAA 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--c------ccc
Confidence 468889987 34455555543 46799999876555544431 1210 000111100000 0 013
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.||+||+.....+....++.+.+.+.++..+++
T Consensus 69 ~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 69 EPIHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred cccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 5899999976555567788888899999986654
No 357
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.18 E-value=2.1 Score=34.52 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=48.0
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------chHHHHHHHHHhcCCCCcEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKIN 74 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~~ 74 (187)
..+..+|+-||||. |...+..+.... -++++.+|.+. ...+.+++++...+-.-.++
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 34667899999973 333333222222 36899999764 23455666776655444466
Q ss_pred EEEcchH-HHHHHHhhcccCCCceeEEEEeCCC
Q 029803 75 FIESEAL-SVLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 75 ~~~~d~~-~~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
.+..+.. +.+..+ -..+|+|+...+.
T Consensus 100 ~~~~~~~~~~~~~~------~~~~DlVid~~D~ 126 (338)
T PRK12475 100 PVVTDVTVEELEEL------VKEVDLIIDATDN 126 (338)
T ss_pred EEeccCCHHHHHHH------hcCCCEEEEcCCC
Confidence 6666543 233333 2579988765443
No 358
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=93.12 E-value=0.81 Score=37.64 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=61.8
Q ss_pred HcCCCEEEEEc--ccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhc----CCCCcEEEEE----cchHHHHH
Q 029803 17 LVNAKKTIEIG--VFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLD 85 (187)
Q Consensus 17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~----~d~~~~~~ 85 (187)
..++.+|+-+| .+.|..++.+|+.... ..+|+++|.+++.++.+++..... +. ...++. .+..+.+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHH
Confidence 34567888887 3467777778876421 237999999999998888753211 11 112222 12323333
Q ss_pred HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+. ....+|+++.... ....+..+.+.++++|.+++
T Consensus 251 ~~t----~g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 251 ELT----GGQGFDDVFVFVP---VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHh----CCCCCCEEEEcCC---CHHHHHHHHHHhccCCeEEE
Confidence 321 1346998876432 24567778899998875543
No 359
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.96 E-value=2.3 Score=34.34 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=60.2
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 92 (187)
...++.+||-+|+| .|..+..+|+... ..+|+++|.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 253 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT---- 253 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh----
Confidence 35667889988864 4455666777653 2379999999887776653 343221211111 1223333321
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 131 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+|+-... ....+..+.+.++++ |.++.-..
T Consensus 254 -~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 -DGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred -CCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence 236898874322 234677788899887 88876443
No 360
>PTZ00357 methyltransferase; Provisional
Probab=92.92 E-value=0.5 Score=41.43 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=64.2
Q ss_pred EEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHH---hcCC-----CCcEEEEEcchHHHHHHHhh-
Q 029803 22 KTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIK---KAGV-----DHKINFIESEALSVLDQLLK- 89 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~---~~~~-----~~~~~~~~~d~~~~~~~~~~- 89 (187)
.|+-+|+|-|-......++. .-..+|+++|-+|..+.....+.. .+.. .++++++..|..++-.....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999997655444433 334689999999886655554432 2211 35699999999876221000
Q ss_pred c---ccCCCceeEEEEe-----CCCcccHHHHHHHHhccCC----CeE
Q 029803 90 Y---SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI 125 (187)
Q Consensus 90 ~---~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~----gG~ 125 (187)
. ....+++|+|+.. ++-+-.++-++-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 0012379999764 3445556667777777765 665
No 361
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.84 E-value=0.69 Score=33.26 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=57.6
Q ss_pred EcccccHHHHHHHhhCCCCCEEEEEeC--CcchHH---HHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCCceeE
Q 029803 26 IGVFTGYSLLLTALTIPEDGQITAIDV--NRETYE---IGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 26 iG~g~G~~~~~la~~~~~~~~v~~iD~--~~~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~D~ 99 (187)
+|=|.=..++.+++......++++.-. ..+..+ .+.++++...-.+ ++ +..-|+.+.-..+. ....+||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~---~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFR---LKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCccccccc---ccCCcCCE
Confidence 455555777788887654556666544 333322 2335555432222 33 34455544333221 12578999
Q ss_pred EEEeCCCcc----------------cHHHHHHHHhccCCCeEEEEe
Q 029803 100 AFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 100 i~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+....+.. ...+++.+.++|+++|.|.+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 987743322 245888889999999999883
No 362
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=92.71 E-value=3.9 Score=33.60 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=77.2
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
.+|.+..+=+.++.+..+..++-..+|.+..+..+...++++.+++..+. =.......++.+...++ .+.++-.+-.
T Consensus 53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~ 130 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDL 130 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSH
T ss_pred ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhH
Confidence 36777888888888888889999999998887777777776788888763 33344555555555554 3555544333
Q ss_pred HHHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe--EEEEeCCCC
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG--IAVYDNTLW 133 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG--~lv~~~~~~ 133 (187)
+.+.... .+..++||+.. ++......++.+.++.+..| .+++|+++-
T Consensus 131 ~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 131 EALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp HHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred HHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence 4344332 35889999985 23333445666666666665 556666653
No 363
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.67 E-value=0.057 Score=35.88 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=27.2
Q ss_pred ceeEEEEeC---------CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 96 SFDYAFVDA---------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 96 ~~D~i~~d~---------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.||+|++-. ..+....+++.++.+|+|||.++++---|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 489888743 22445679999999999999999975554
No 364
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.64 E-value=2.3 Score=29.12 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=48.6
Q ss_pred CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEcc
Q 029803 20 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESE 79 (187)
Q Consensus 20 ~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d 79 (187)
..+|+-+|+| .|...+..+.... -++++.+|.+. ...+.+++++......-+++.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 4689999996 4543333332223 46899988632 2346677777765544567777777
Q ss_pred h-HHHHHHHhhcccCCCceeEEEEeCCC
Q 029803 80 A-LSVLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
. .+....+. ..+|+|+...+.
T Consensus 81 ~~~~~~~~~~------~~~d~vi~~~d~ 102 (135)
T PF00899_consen 81 IDEENIEELL------KDYDIVIDCVDS 102 (135)
T ss_dssp CSHHHHHHHH------HTSSEEEEESSS
T ss_pred cccccccccc------cCCCEEEEecCC
Confidence 6 33444442 578999876544
No 365
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.61 E-value=2.6 Score=34.62 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=60.9
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS 91 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 91 (187)
...++.+||-.|+| .|..++.+|+... ...++.+|.+++.++.+++ .+.. .+.. .+..+.+..+.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~--- 250 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQIL--- 250 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHc---
Confidence 34567788777764 4455566777653 2346667888777777665 2432 2221 12333333321
Q ss_pred cCCCceeEEEEeCCCcc-----------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 92 ENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
....+|+++-....+. ....++++.++++++|.+++-...
T Consensus 251 -~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 251 -GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred -CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 1246897774332211 134788889999999999985543
No 366
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.54 E-value=3.1 Score=31.36 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+.+++...+..-+++.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 4456789999996 3443333333333 46888886532 3345666677665533345555
Q ss_pred EcchH-HHHHHHhhcccCCCceeEEEEeCCCcc
Q 029803 77 ESEAL-SVLDQLLKYSENEGSFDYAFVDADKDN 108 (187)
Q Consensus 77 ~~d~~-~~~~~~~~~~~~~~~~D~i~~d~~~~~ 108 (187)
..... +.+..+. ..+|+|+...+...
T Consensus 97 ~~~i~~~~~~~~~------~~~DvVi~~~d~~~ 123 (228)
T cd00757 97 NERLDAENAEELI------AGYDLVLDCTDNFA 123 (228)
T ss_pred cceeCHHHHHHHH------hCCCEEEEcCCCHH
Confidence 55442 2233332 56999887654333
No 367
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.47 E-value=5.5 Score=33.05 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=57.4
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----cCC
Q 029803 21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE 94 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~ 94 (187)
++|--||.|. .+..+|..+. .+.+|+++|.+++.++..+. + ...+...+..+.+......+ ...
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----G---EIHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 5677888753 3333443332 25789999999987764321 1 12222222222222110000 001
Q ss_pred CceeEEEEeCCC----------cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 95 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 95 ~~~D~i~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
+..|+||+.... .......+.+.+.+++|.+++...+...|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 357899876533 23344567778889998888887666544
No 368
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.46 E-value=1.8 Score=34.81 Aligned_cols=103 Identities=22% Similarity=0.336 Sum_probs=66.6
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~ 93 (187)
+..++.++.-+||| .|..++.-|.... ..+++++|++++.++.|++- |..+-+.-... |.-+.+..+-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T----- 251 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT----- 251 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc-----
Confidence 45677899999987 5667776666655 68999999999999888764 43322222111 3444444432
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+...|..|--. .....+++++..+.++|..++-.+
T Consensus 252 ~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 252 DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEec
Confidence 33677775432 233477788888888998877444
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.43 E-value=2.4 Score=33.70 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=59.0
Q ss_pred HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch---HHHHHHHhh
Q 029803 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLK 89 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~ 89 (187)
.+..++.+||-.|+|. |..++.+|+.. +.+ ++.++.+++..+.+++ .+....+.....+. .+.+....
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~- 230 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL- 230 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh-
Confidence 3455677888877654 66777788875 345 8888887776665543 23221111111121 12222221
Q ss_pred cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
....+|+|+-.... ...+..+++.|+++|.++.-
T Consensus 231 ---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 ---GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 13569988753221 23567788999999998853
No 370
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=3.5 Score=33.88 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCEEEEEcc-cccH--HHHHHHhhCCC---CCEEEEEe-CCcchHHHHHHHHHhcCCCCcEEEEEcchHHH----HHHH
Q 029803 19 NAKKTIEIGV-FTGY--SLLLTALTIPE---DGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQL 87 (187)
Q Consensus 19 ~~~~vLeiG~-g~G~--~~~~la~~~~~---~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 87 (187)
+|..|+=+|- |.|- +..-+|..+.. ..-++|.| ..+.+.+..+.|..+.+++-.......|.... +..+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 4445677762 4443 22334444422 23467777 45667777888777666542222333444333 2333
Q ss_pred hhcccCCCceeEEEEeCC--CcccHHH---HHHHHhccCCCeEEEEeCCC
Q 029803 88 LKYSENEGSFDYAFVDAD--KDNYCNY---HERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~--~~~~~~~---~~~~~~~L~~gG~lv~~~~~ 132 (187)
..+.||+|++|.. +..-... +.++.+.++|+-+|++-|..
T Consensus 180 -----Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 180 -----KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred -----HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 2579999999953 2222334 44456899999988876554
No 371
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.41 E-value=1.1 Score=35.37 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=49.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-C--CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPE-D--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~-~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+|.-||+|. .+..++..+.. + .+|+++|.+++..+.+++ .+... . ...+..+. -...
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~a 67 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGA 67 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCC
Confidence 5788888764 33333333221 2 389999999876665543 23211 1 11122111 1457
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+|++..........++.+.+.++++.+++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888886554445556666667778877554
No 372
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.39 E-value=0.73 Score=35.64 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=48.8
Q ss_pred HHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803 7 HGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 79 (187)
Q Consensus 7 ~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 79 (187)
++.++..+.+ ..+...++|.|||.|..+.+++..++ +...++.||...... ++-..+........++-+..|
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riD 81 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRID 81 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEE
Confidence 3455666555 34667899999999999999999884 257899999865443 333334433211235555566
Q ss_pred hHH
Q 029803 80 ALS 82 (187)
Q Consensus 80 ~~~ 82 (187)
+.+
T Consensus 82 I~d 84 (259)
T PF05206_consen 82 IKD 84 (259)
T ss_pred eec
Confidence 654
No 373
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.38 E-value=2.7 Score=33.49 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=60.0
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
+..++.+||-.|+| .|..++.+|+.. +. +|+.++.+++..+.+++ .+....+.....+..+.+..+. .
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~ 238 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----G 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----C
Confidence 34566788888753 345556666664 45 78889888887776643 2432212222233333333321 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
...+|+++-... ....++.+++.|+++|.++.-.
T Consensus 239 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 239 GGGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence 245998875322 1346778889999999988743
No 374
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=92.33 E-value=2 Score=34.70 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=59.4
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++ .+...-+.....+..+.+..+. .
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~ 252 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----G 252 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----C
Confidence 34567788888764 3566777777764 2369999998877665543 2322111111112223333321 3
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+|+|+-.... ...+..+++.++++|.++.-
T Consensus 253 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDTTGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence 568987743221 24567888999999998863
No 375
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.31 E-value=0.43 Score=30.48 Aligned_cols=85 Identities=11% Similarity=0.045 Sum_probs=52.4
Q ss_pred EEEEcccccHHHHHHHhhCCC-C---CEEEEE-eCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 23 TIEIGVFTGYSLLLTALTIPE-D---GQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 23 vLeiG~g~G~~~~~la~~~~~-~---~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
|-=||+ |..+..++..+-. + .+++.+ +.+++..+...+.+ + +.+...+..+..+ ..
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a 62 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA 62 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence 444555 5555555554421 3 588844 99988776665543 2 4444445555443 47
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+||+...+....+.++++ ..+.++..++
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 9999988888888888888 6666666655
No 376
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=92.09 E-value=4.3 Score=32.02 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=60.2
Q ss_pred HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029803 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~ 92 (187)
....++.+||-.|+| .|..++.+|+... +.++++++.+++..+.+++ .+....+.... .+..+.+...
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----- 227 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----- 227 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh-----
Confidence 345677788888853 4556666777532 5689999998887777743 24321111111 1212222222
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.+|.++.+.. ....++.+++.|+++|.++.
T Consensus 228 -~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 228 -TGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred -cCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEE
Confidence 135787776642 23567888999999999885
No 377
>PRK08114 cystathionine beta-lyase; Provisional
Probab=92.01 E-value=6.1 Score=32.59 Aligned_cols=127 Identities=11% Similarity=0.082 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
.+|.+..+=..++.+..+...+-..+|++.....+...+.++.+|++.+. -.......++.+++.|. .+.++...-.
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence 45777777778888888889999999888777666555666778887643 23444555555666664 2555442222
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCC---CeEEEEeCCCCCcc
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV---GGIAVYDNTLWGGT 136 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~---gG~lv~~~~~~~~~ 136 (187)
+.+.... .++-.+|++.... ......++.+.++.+. |-.+++|+++..+.
T Consensus 138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~ 192 (395)
T PRK08114 138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV 192 (395)
T ss_pred HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 3333332 2345789887522 1112234444444444 45777787765443
No 378
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.95 E-value=3.3 Score=33.37 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=59.0
Q ss_pred HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcc
Q 029803 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS 91 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~ 91 (187)
.+..++.+||-.|+| .|..++.+|+... ..+|++++.+++..+.+++ .+....+..... +..+.+..+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 345677889888864 3445566677653 2379999999887776643 343211211111 1222233321
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 131 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+++- .. .....+..+++.++++ |.++.-..
T Consensus 255 --~~~~d~vid-~~--G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 --GGGVDYSFE-CT--GNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred --CCCCCEEEE-CC--CChHHHHHHHHHhhcCCCEEEEECc
Confidence 236896663 21 1234566778889996 88876443
No 379
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.85 E-value=5.5 Score=33.17 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=77.1
Q ss_pred cCCCEEEEEc-ccccHH--HHHHHhhCC---CCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803 18 VNAKKTIEIG-VFTGYS--LLLTALTIP---EDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 18 ~~~~~vLeiG-~g~G~~--~~~la~~~~---~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (187)
.+|..|+-+| =|+|-+ +.-+|..+. ...-++++|. -|.+++..+....+.+.+-.-.-...|..++...-...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 3567788888 345533 233444432 2345788884 56677777777666554311111112333332221100
Q ss_pred ccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029803 91 SENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 165 (187)
Q Consensus 91 ~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (187)
...+.||+|++|..- +...+-+.++.+.++|+-+|++-|....-. .....+.|++.+
T Consensus 178 -ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---------------A~~~A~aF~e~l-- 239 (451)
T COG0541 178 -AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---------------AVNTAKAFNEAL-- 239 (451)
T ss_pred -HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH---------------HHHHHHHHhhhc--
Confidence 114679999999532 234455677789999998887766653221 344478888876
Q ss_pred CCCeEEEeee
Q 029803 166 DPRVQLSHVA 175 (187)
Q Consensus 166 ~~~~~~~~lp 175 (187)
+++.+++.
T Consensus 240 --~itGvIlT 247 (451)
T COG0541 240 --GITGVILT 247 (451)
T ss_pred --CCceEEEE
Confidence 35555554
No 380
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.84 E-value=4.5 Score=32.65 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=54.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++++||-.|+| .|..++.+|+.. +.++++++.+++....+. +..+.. .++.....+.+... .+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~------~~~ 247 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAA------IGT 247 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhh------cCC
Confidence 466788888864 455666677765 467888887765433222 223432 12211111222222 135
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|++| |.. .....++.+++.++++|.++.-.
T Consensus 248 ~D~vi-d~~--g~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 248 MDYII-DTV--SAVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCEEE-ECC--CCHHHHHHHHHHhcCCcEEEEeC
Confidence 89887 332 12346777889999999988643
No 381
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.72 E-value=0.88 Score=38.09 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=65.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
+++.+|||.--....+-+.. -..|+.+|.|+..++.....-.. -....++...|..... .++++||.|+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~-------fedESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV-------FEDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc-------CCCcceeEEE
Confidence 79999998887766665542 34799999999887766654321 1245778888876532 2468899886
Q ss_pred EeCC-------------CcccHHHHHHHHhccCCCeEEEE
Q 029803 102 VDAD-------------KDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 102 ~d~~-------------~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.-+. .......+...+++++++|..+.
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 4321 11234567788899999998655
No 382
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=91.71 E-value=3.8 Score=32.27 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=54.4
Q ss_pred CCCEEEEE--c-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 19 NAKKTIEI--G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 19 ~~~~vLei--G-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
++..++-+ | .+.|..++.+|+.. +.++++++.+++..+.+++ .+...-+.....+..+.+..+. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence 34455544 3 34566777788775 5689999988877776654 3432212211223333333321 124
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++-.... ......++.++++|.++.-
T Consensus 212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCcEEEECCCc----HHHHHHHHhhCCCCEEEEE
Confidence 68987742221 2234567889999998764
No 383
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.52 E-value=3.8 Score=33.01 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=58.8
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 92 (187)
...++.+||-+|+| .|..++.+|+... ..+|++++.+++..+.+++ .+....+..... +..+.+..+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---- 251 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---- 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh----
Confidence 34567889888864 3445566777653 2379999998887776643 243221111111 1122233321
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 130 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 130 (187)
...+|+|+-... ....+..+++.++++ |.++.-.
T Consensus 252 -~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 252 -GGGVDYSFECTG---NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred -CCCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEc
Confidence 246898774322 134667788899885 8887643
No 384
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.43 E-value=0.9 Score=35.76 Aligned_cols=94 Identities=16% Similarity=0.031 Sum_probs=60.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCceeEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYA 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~i 100 (187)
+++|+.||.|..++-+-.+. -..+.++|+++.+.+.-+.|+. ....+|..+.-. .+. +.+|++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~------~~~D~l 65 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP------KDVDLL 65 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH------HT-SEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc------ccceEE
Confidence 68999999999998887752 2468889999999999888873 778888876433 331 159998
Q ss_pred EEeCCCc---------------c-cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 101 FVDADKD---------------N-YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 101 ~~d~~~~---------------~-~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+.....+ . .-..+-.+.+.++| -+++++|+-
T Consensus 66 ~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P-k~~~~ENV~ 112 (335)
T PF00145_consen 66 IGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP-KYFLLENVP 112 (335)
T ss_dssp EEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS--SEEEEEEEG
T ss_pred EeccCCceEeccccccccccccchhhHHHHHHHhhccc-eEEEecccc
Confidence 8653211 1 11122333467788 567777764
No 385
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=91.36 E-value=5.1 Score=33.38 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=60.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh---cCC-----CCcEEEEEcchHHHHHHHhhc
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~~~~~~~d~~~~~~~~~~~ 90 (187)
++.+|--||. |+.++.+|..+..+.+|+++|++++.++..++-... .++ ..+.. ...+. +. .
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~-~t~~~-~~---~--- 74 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLK-FTSEI-EK---I--- 74 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCee-EEeCH-HH---H---
Confidence 5567777765 777777777776567999999999887766522100 000 00111 11121 11 1
Q ss_pred ccCCCceeEEEEeCC-C------cc---cHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 91 SENEGSFDYAFVDAD-K------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 91 ~~~~~~~D~i~~d~~-~------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
...|++|+... + .+ .....+.+.+.|++|.+++...+...|
T Consensus 75 ----~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 75 ----KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred ----cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 46788887632 2 11 222345667889999888887777555
No 386
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.34 E-value=1.6 Score=34.97 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=65.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC-cee
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~D 98 (187)
..+++|+.||.|...+-+..+. -.-+.++|+++.+.+.-+.|+.. ..++..|..+....-. .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 4689999999999988777642 23577899999998888887642 4566677765433211 12 789
Q ss_pred EEEEeCCCcc----------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803 99 YAFVDADKDN----------------YCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 99 ~i~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+++-....+. ..-.+-++...++| -.+++.|+-
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence 8875421111 11234455678888 788887764
No 387
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.29 E-value=1.4 Score=35.51 Aligned_cols=97 Identities=11% Similarity=-0.033 Sum_probs=56.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-hcCCC------CcEEEEEcchHHHHHHHhhc
Q 029803 18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVD------HKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~------~~~~~~~~d~~~~~~~~~~~ 90 (187)
++..+|.-||+|.- +..++..+...+.++....+++..+..++.-. ...++ .++. ...|..+. +
T Consensus 5 ~~~mkI~IiGaGa~--G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~-~t~d~~~a---~--- 75 (341)
T PRK12439 5 KREPKVVVLGGGSW--GTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLR-ATTDFAEA---A--- 75 (341)
T ss_pred cCCCeEEEECCCHH--HHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeE-EECCHHHH---H---
Confidence 45578999988544 33344433334467777777776665554311 00111 1121 22232221 1
Q ss_pred ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
...|+|++..........++++.+.++++..++
T Consensus 76 ----~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 76 ----NCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred ----hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 567999987766677788888888898886444
No 388
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.28 E-value=4.1 Score=29.18 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 4 ~~~~~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
+..+.+.|...+.. ....+|+=|||=+-+..+.- ...+..+++..|.+... +..+- +...++-.+..
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~-~~F~fyD~~~p 76 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGG-DEFVFYDYNEP 76 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCC-cceEECCCCCh
Confidence 34455555554443 45578999998666554433 22236789999998764 22221 11233333333
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCC--cccH-HHHHHHHhccCCCeEEEE
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADK--DNYC-NYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~--~~~~-~~~~~~~~~L~~gG~lv~ 128 (187)
..++... .++||+|++|+.- +... ...+.+.-++++++.+++
T Consensus 77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 3333321 4799999999753 2222 333444446677777776
No 389
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=91.25 E-value=3.2 Score=33.44 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=56.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.++.+||-.|+| .|..+..+|+... .+ +++++.+++..+.+++ .+....+.....+..+.+.... ...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~ 255 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGR 255 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCC
Confidence 566777777654 5566666777653 45 8888888776665543 2332111111122222222221 135
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+|+|+-.... ...++.+++.|+++|.++.
T Consensus 256 ~~d~vld~vg~---~~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 256 GVDVVVEALGK---PETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCCEEEEeCCC---HHHHHHHHHHHhcCCEEEE
Confidence 69988843221 1356778899999998875
No 390
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.22 E-value=5 Score=32.38 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=45.9
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------chHHHHHHHHHhcCCCCcEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKIN 74 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~~ 74 (187)
..+..+|+-+|||. |...+..+.... -++++.+|.+. ...+.+++++...+-.-.++
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 34667899999973 433333222222 46899999763 23344556666544333455
Q ss_pred EEEcchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029803 75 FIESEALS-VLDQLLKYSENEGSFDYAFVDAD 105 (187)
Q Consensus 75 ~~~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~ 105 (187)
.+..+... .+..+ -..||+|+...+
T Consensus 100 ~~~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 100 AIVQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred EEeccCCHHHHHHH------HcCCCEEEEcCC
Confidence 66555432 22333 257998876543
No 391
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.22 E-value=3.1 Score=32.77 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=48.1
Q ss_pred EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 22 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 22 ~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
+||-+||| .|...+..+...+ -++++.+|.+. ...+.|.+.+...+-.-+++.+..+..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47888875 3333333222222 46888888633 234555666665554445666766665
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHH
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 115 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~ 115 (187)
+.-..+ -.+||+|+...+......++..
T Consensus 80 ~~~~~f------~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 80 DKDEEF------YRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred chhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence 443344 2679999876544333334444
No 392
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.19 E-value=0.93 Score=35.91 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=26.7
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+||+..........++.+.+++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 6799999976555667778888888999987664
No 393
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.14 E-value=3.8 Score=33.67 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---CC-----CCcEEEEE-cchHHHHHHHhhccc
Q 029803 22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIE-SEALSVLDQLLKYSE 92 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~~~~~~-~d~~~~~~~~~~~~~ 92 (187)
+|--||+ |+.+..+|..+..+..|+++|.+++.++..++..... ++ ..+.++.. .+..+.
T Consensus 2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--------- 70 (388)
T PRK15057 2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--------- 70 (388)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------
Confidence 3455565 5555555544433578999999999888776532100 00 00112211 111111
Q ss_pred CCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803 93 NEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG 135 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
-...|+|++..... ......+.+.+ +++|.+++...+...|
T Consensus 71 -~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 71 -YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred -hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 14578888764211 12334455556 6888888877666555
No 394
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=91.11 E-value=3.7 Score=32.50 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=57.7
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
...++.+||-.|+| .|..+..+|+.. +.+++.++.+++..+.+++ .+....+.....+..+.+..+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~------- 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL------- 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------
Confidence 45567788888853 445556667765 4689999988777666643 343211111122222222221
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+|+++- .. .....++.+++.|+++|.++.-
T Consensus 227 ~~~d~vi~-~~--g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 227 GGAKLILA-TA--PNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCCCEEEE-CC--CchHHHHHHHHHcccCCEEEEE
Confidence 35898874 21 1234677788999999988863
No 395
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.05 E-value=1.8 Score=33.72 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=47.7
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
+|.-||+| ..+..++..+. .+.+|+++|.+++.++.+.+. +. +.....+. + . -...|+|
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV 61 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence 46667765 34333443331 246899999998876665432 21 11111111 1 1 1457888
Q ss_pred EEeCCCcccHHHHHHHHhccCCCeEE
Q 029803 101 FVDADKDNYCNYHERLMKLLKVGGIA 126 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~l 126 (187)
|+..........++.+.+.++++.++
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 88765555566677777777766444
No 396
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.04 E-value=0.81 Score=35.27 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=45.1
Q ss_pred HHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHH
Q 029803 35 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 114 (187)
Q Consensus 35 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~ 114 (187)
..+.+..+ ..+|+++|.+++.++.+.+. |... -...+ .+ .+ ..+|+|++..........++
T Consensus 3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~-~~---~~-------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKAGP-DVEVYGYDRDPETLEAALEL----GIID---EASTD-IE---AV-------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSS---EEESH-HH---HG-------GCCSEEEE-S-HHHHHHHHH
T ss_pred HHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCee---eccCC-Hh---Hh-------cCCCEEEEcCCHHHHHHHHH
Confidence 34444433 68999999999987766543 4332 12222 22 22 46799998777777788888
Q ss_pred HHHhccCCCeEEE
Q 029803 115 RLMKLLKVGGIAV 127 (187)
Q Consensus 115 ~~~~~L~~gG~lv 127 (187)
++.+.+++|++++
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 8888888876554
No 397
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.01 E-value=0.72 Score=36.49 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=64.4
Q ss_pred CEEEEEcccccHHHHHHHhhCC-------------------CCCEEEEEeCCc--chHHHHHHHHHhc------------
Q 029803 21 KKTIEIGVFTGYSLLLTALTIP-------------------EDGQITAIDVNR--ETYEIGLPIIKKA------------ 67 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~-------------------~~~~v~~iD~~~--~~~~~a~~~~~~~------------ 67 (187)
.+||-||.|.|.-.+.+|..+. +...++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999987777776660 124899999844 2222222222222
Q ss_pred CC--C--CcEEEEEcchHHHHH-HHhhcccCCCceeEEEEe--------CCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 68 GV--D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFVD--------ADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 68 ~~--~--~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~i~~d--------~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.. + -+++|.+.|++.... .+... ......++|-+- ........++..+-..++||.++++.|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 136788888865322 11100 011245666321 1244566789999999999999888543
No 398
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.01 E-value=0.59 Score=37.16 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=52.2
Q ss_pred EEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHHhhcccCCCceeEEE
Q 029803 24 IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 24 LeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~D~i~ 101 (187)
+|||+ |.+.++.+.... .+....++|++......|+.++.+++++..+.+++.+..+ .+...... ..+..||++.
T Consensus 107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM 183 (419)
T ss_pred eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence 57776 666666554332 1467889999999999999999999999889988887644 23322111 1123477776
Q ss_pred Ee
Q 029803 102 VD 103 (187)
Q Consensus 102 ~d 103 (187)
+.
T Consensus 184 cN 185 (419)
T KOG2912|consen 184 CN 185 (419)
T ss_pred cC
Confidence 65
No 399
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.98 E-value=2.1 Score=33.87 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 19 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
++.+||-.|+|. |..+..+++.. +. ++++++.+++..+.+++ .+.. .++..+... +..+.. ....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~ 231 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGD 231 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCC
Confidence 677888888764 66777777765 34 78898888777665443 2322 122221111 112111 1245
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+|+++-... ....++.+++.|+++|.++.
T Consensus 232 vd~vld~~g---~~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 232 FDVVFEASG---APAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ccEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence 998875322 12456788899999999885
No 400
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.95 E-value=3.3 Score=32.32 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=54.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--------CCC---------CcEEEEEcchHHH
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV 83 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~ 83 (187)
++|.-||+|.=..++....... +.+|+.+|.+++.++.+++.++.. ... .+++. ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 5688888874333332222212 568999999999888887664321 111 12222 2232221
Q ss_pred HHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEE
Q 029803 84 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~ 128 (187)
-...|+|+...... .....++++.+.++++.+|+.
T Consensus 82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 14678888765322 345667777777877766544
No 401
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=90.82 E-value=4.6 Score=30.76 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=46.3
Q ss_pred EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEcch
Q 029803 22 KTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA 80 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~ 80 (187)
+||-+|+| ..+.++++.+ ..-++++.+|.+. ...+.+.+++.+.+..-+++.+..+.
T Consensus 1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 47788875 3334433333 1146888888643 22345556666555444566666665
Q ss_pred H---HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHH
Q 029803 81 L---SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 116 (187)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~ 116 (187)
. +....+ -..||+|+...+......++.++
T Consensus 79 ~~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 79 GPEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred ChhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence 2 222233 26799998765443334444433
No 402
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.78 E-value=4.8 Score=32.24 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH---HHHHHHhhcccC
Q 029803 19 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSEN 93 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~ 93 (187)
++.+||-.|+| .|..+..+|+.. +. ++++++.+++..+.++ ..+....+.....+.. ..+.... .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----G 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence 66788887753 344556667765 45 8999988777665553 2343221111111111 1122221 2
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+++-.... ...+..+++.++++|.++.-
T Consensus 247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 3579988743211 34567788999999999864
No 403
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=90.75 E-value=4.4 Score=31.18 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=59.6
Q ss_pred HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029803 15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK 89 (187)
Q Consensus 15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 89 (187)
....++.+||-.|+ +.|..+..+++.. +.++++++.+++..+.+++ .+.. .++..+ ..+.+..+.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~- 201 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT- 201 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence 34556788998884 5677777788875 5788888888776665533 3432 222222 222222221
Q ss_pred cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
....+|+++-... . .....+++.++++|.++.
T Consensus 202 ---~~~~~d~vl~~~~--~--~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 202 ---GGRGVDVVYDGVG--K--DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred ---CCCCeeEEEECCC--c--HhHHHHHHhhccCcEEEE
Confidence 2356998884322 1 356677889999998875
No 404
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=90.75 E-value=0.8 Score=29.52 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCcc--ccCCC---CCCCCCcccchHHHHHHHHHHhhcCCC
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT--VAVPE---EQVPDHFRGSSRQAILDLNRSLADDPR 168 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (187)
+..+|++++|....-.++.+..+...++-||++++--..+... ..++. ....... ......++.|.+.+.++++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~-~~~~~F~~rf~~~L~~~~~ 87 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT-DVTPRFIRRFIRSLQSDPG 87 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS--B--HHHHHHHHHHHCCSTT
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC-cccHHHHHHHHHHHHHCcC
Confidence 4689999999988788889999999999999998732221111 00000 0000011 1144568888888988887
Q ss_pred eE
Q 029803 169 VQ 170 (187)
Q Consensus 169 ~~ 170 (187)
+.
T Consensus 88 i~ 89 (92)
T PF08351_consen 88 II 89 (92)
T ss_dssp S-
T ss_pred Cc
Confidence 64
No 405
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.71 E-value=5 Score=32.33 Aligned_cols=101 Identities=21% Similarity=0.353 Sum_probs=57.6
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 92 (187)
+..++.+||-+|+| .|..+..+|+... ...+++++.+++..+.+++ .+....+..... +..+.+..+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---- 250 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---- 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence 34567788888753 3445555666653 2358888888877766643 243221222222 2222222221
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccC-CCeEEEEe
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~ 129 (187)
.+.+|+++- .. .....+..+++.++ ++|.++.-
T Consensus 251 -~~~~d~vid-~~--g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 -DGGVDYAFE-VI--GSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -CCCCcEEEE-CC--CCHHHHHHHHHHhccCCCEEEEE
Confidence 256898873 32 12346677888999 99998864
No 406
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.70 E-value=6.2 Score=30.21 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=46.1
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+|+-+|+| .|...+..+.... -++++.+|.+. ...+.+++++...+-.-+++.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 3467899999996 3444333333333 46888887533 2334556666655433345555
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803 77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
.....+ ....+ -..||+|+...+.
T Consensus 108 ~~~i~~~~~~~~------~~~~DiVi~~~D~ 132 (245)
T PRK05690 108 NARLDDDELAAL------IAGHDLVLDCTDN 132 (245)
T ss_pred eccCCHHHHHHH------HhcCCEEEecCCC
Confidence 544332 22333 2579988865543
No 407
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.65 E-value=4.8 Score=32.86 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=45.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------cchHHHHHHHHHhcCCCCcEEEEE
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~ 77 (187)
.+..+|+-+||| .|...+..+.... -++++.+|.+ ....+.+.+.+...+-.-.++.+.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 466789999997 3444333333333 4689999986 344566666666544322344444
Q ss_pred cchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803 78 SEALS-VLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
....+ .+..+. ..+|+|+...+.
T Consensus 212 ~~~~~~~~~~~~------~~~D~Vv~~~d~ 235 (376)
T PRK08762 212 ERVTSDNVEALL------QDVDVVVDGADN 235 (376)
T ss_pred ccCChHHHHHHH------hCCCEEEECCCC
Confidence 33322 222331 569988765443
No 408
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.39 E-value=4.4 Score=28.04 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=51.7
Q ss_pred EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHH-HHhcCCCCcEEEEEcc-hHHHHHHHhhcccCCCceeE
Q 029803 23 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPI-IKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDY 99 (187)
Q Consensus 23 vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~D~ 99 (187)
|+-+|+ |..+..+|..+ ..+..|+.+...+ .++..++. +.-........+.... ....... ..+||+
T Consensus 1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSAD-------AGPYDL 70 (151)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHH-------HSTESE
T ss_pred CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhc-------cCCCcE
Confidence 345565 44555544444 1267899999876 55543322 0000001011111111 1001011 378999
Q ss_pred EEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 100 AFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
||+..........++.+.+.+.++..+++
T Consensus 71 viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 71 VIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 99976666777888999999999976664
No 409
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=90.27 E-value=7.9 Score=30.70 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=56.4
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.++.+|+-.|+| .|..++.+++.. +.+ +++++-+++..+.+++ .+....+.....+..+.+..+. ..+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence 456677766654 455666677765 454 8888777665554443 2432112222233333333331 235
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++-.... ...+..+++.|+++|.++.-
T Consensus 230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 68988753221 24567788999999988764
No 410
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=90.27 E-value=6.1 Score=31.28 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=57.7
Q ss_pred HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
...++.+||-.|+|. |..+..+|+.. +.+ +++++.+++..+.++ ..+....+...... .+.+.... .
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~ 224 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----E 224 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----C
Confidence 345667888888654 66777778765 344 888887776655443 23332111111112 22222221 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+++-.. .....+..+++.|+++|.++.-
T Consensus 225 ~~~~d~vld~~---g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 225 GRGADLVIEAA---GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCEEEECC---CCHHHHHHHHHHhhcCCEEEEE
Confidence 24599887432 1234667788999999998764
No 411
>PLN02494 adenosylhomocysteinase
Probab=90.23 E-value=4.2 Score=34.32 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=57.0
Q ss_pred HHHHHHHH----cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803 10 LMAMLLRL----VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 84 (187)
Q Consensus 10 ll~~l~~~----~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 84 (187)
++..+.+. ..+++|+-+|+| .|......++.+ +.+|+.+|.++.....+.. .+. .+. +..+.+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal 307 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV 307 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH
Confidence 34444443 457899999987 344445555554 5689999998865443322 122 111 222222
Q ss_pred HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...|+|+...... .-.....++.||+|++|+--
T Consensus 308 ----------~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 308 ----------SEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred ----------hhCCEEEECCCCc--cchHHHHHhcCCCCCEEEEc
Confidence 3579888732211 12336677899999999874
No 412
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.19 E-value=7.6 Score=33.06 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEc
Q 029803 5 TIHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIES 78 (187)
Q Consensus 5 ~~~~~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 78 (187)
+.+..++..++... +...+.|..||+|........... ....+++-|..+.+...++.+..-.+.. +......+
T Consensus 201 ~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~ 280 (501)
T TIGR00497 201 QDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA 280 (501)
T ss_pred HHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC
Confidence 34445554444432 346899999999998766544332 1356899999999999999886555442 22333344
Q ss_pred chHHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEE
Q 029803 79 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIA 126 (187)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~l 126 (187)
|.+...... ...+||.|+.+... ..-..++..++..|++||..
T Consensus 281 dtl~~~d~~-----~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ 351 (501)
T TIGR00497 281 DTLTTKEWE-----NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA 351 (501)
T ss_pred CcCCCcccc-----ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence 443211110 12457777655310 01123566777899998853
No 413
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=90.18 E-value=4.5 Score=32.88 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=56.3
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhccc
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSE 92 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~ 92 (187)
..++.+||-.|+| .|..++.+|+... ..++++++.+++..+.+++ .+....+..... +..+.+..+.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~---- 271 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT---- 271 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----
Confidence 4456778777653 3344555666543 2379999887775544443 344221111111 2222233331
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+..+|+|+ +..- .....+..+++.|+++|.++.-
T Consensus 272 ~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 235699777 4322 2245677888999999998864
No 414
>PLN02256 arogenate dehydrogenase
Probab=90.17 E-value=5.6 Score=31.54 Aligned_cols=97 Identities=15% Similarity=0.025 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 87 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 87 (187)
.-++...+..+..+|.-||+| ..+..++..+. .+.+|+++|.++. .+.+ ...+. .. ..+..+..
T Consensus 25 ~~~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--- 89 (304)
T PLN02256 25 SRLQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--- 89 (304)
T ss_pred hHHhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---
Confidence 334555556677789999975 44444444442 1358999998763 2222 22332 11 22322221
Q ss_pred hhcccCCCceeEEEEeCCCcccHHHHHHH-HhccCCCeEE
Q 029803 88 LKYSENEGSFDYAFVDADKDNYCNYHERL-MKLLKVGGIA 126 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~-~~~L~~gG~l 126 (187)
....|+|++..........++++ ...++++.++
T Consensus 90 ------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 90 ------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence 13478888876555566666666 4567776543
No 415
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=90.13 E-value=2.7 Score=27.16 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=41.7
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
++|| +-||+|.++..++.. .++.++..+++ +++...+..+.-.. ...+|+|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~--~~v~a~~~~~~~~~-------~~~~Dvi 54 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP--VKIAAGSYGAAGEK-------LDDADVV 54 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc--EEEEEecHHHHHhh-------cCCCCEE
Confidence 4555 567888776656543 24445555654 77777777664332 2578999
Q ss_pred EEeCCCcccHHHHHHHHhccCCC
Q 029803 101 FVDADKDNYCNYHERLMKLLKVG 123 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~g 123 (187)
++.+. ....++++.+...+-
T Consensus 55 ll~pq---i~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 55 LLAPQ---VAYMLPDLKKETDKK 74 (95)
T ss_pred EECch---HHHHHHHHHHHhhhc
Confidence 98653 333445555555443
No 416
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.94 E-value=0.84 Score=34.46 Aligned_cols=60 Identities=12% Similarity=-0.019 Sum_probs=47.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
....|.|||.|.|..+..+..+- ..++..+|.++.++.-.+...+.+. .+..++++|++.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 34579999999999999998763 4689999999998887776655333 468889999864
No 417
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=89.83 E-value=7.4 Score=32.10 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+|.+.++-..++.......++-.++|+......+...+.++.+|+..+.. ........+.+...+. .+.++..+-.+
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 146 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS 146 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 56677788888888888889998888877666554445556777766532 2333444445555553 34444333223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEEeCCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW 133 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~ 133 (187)
.+.... .+...+|++... +......++.+.++.+..| .+++|+++.
T Consensus 147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 233321 234678887532 2222223555555555545 555666643
No 418
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.72 E-value=7.7 Score=31.86 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=71.9
Q ss_pred HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH-------HHhcCC-CCcEEEEEcchHH--HHH
Q 029803 16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI-------IKKAGV-DHKINFIESEALS--VLD 85 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-------~~~~~~-~~~~~~~~~d~~~--~~~ 85 (187)
+..+.....|+|+|.|......+.... ...=+++++.....+.+..+ .+-.|. .+.++.++++..+ ...
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 466778899999999999888776544 44557777665544433221 222333 3557888888754 233
Q ss_pred HHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 86 QLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.+ ....++||+.... +...--+++++..+++|-.|+-...+.
T Consensus 268 eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 268 EI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred HH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence 33 3567899987432 222233557889999999998876664
No 419
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.69 E-value=5.9 Score=31.23 Aligned_cols=95 Identities=20% Similarity=0.108 Sum_probs=52.0
Q ss_pred CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHh-cCC--C--------CcEEEEEcchHHHHHHH
Q 029803 20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKK-AGV--D--------HKINFIESEALSVLDQL 87 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~-~~~--~--------~~~~~~~~d~~~~~~~~ 87 (187)
-++|.-||+|.=. ..++..+ ..+.+|+.+|.+++.++.+++.+.. .+. . .++++ ..+..+.
T Consensus 4 ~~~I~vIGaG~mG--~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---- 76 (311)
T PRK06130 4 IQNLAIIGAGTMG--SGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---- 76 (311)
T ss_pred ccEEEEECCCHHH--HHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----
Confidence 3578888886432 2222222 1256899999999988887765322 111 0 11111 1222211
Q ss_pred hhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEE
Q 029803 88 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv 127 (187)
-...|+|+...... .....+..+.+.++++.+++
T Consensus 77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 14679998865332 24556777767676655544
No 420
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.68 E-value=2 Score=33.60 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.6
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+||+..........++.+.+.+.++.+++.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 6799999977666677788888888888876654
No 421
>PRK05939 hypothetical protein; Provisional
Probab=89.67 E-value=10 Score=31.20 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=67.8
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
.+|.+..+=+.++........+-..+|++.....+...+.++.+|+..+..-......-..+...|. .+.++..+-.+
T Consensus 45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC--EEEEECCCCHH
Confidence 3567777777888888888888888877666555544556577888876532211111123444443 24444332223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeE-EEEeCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGI-AVYDNTL 132 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~-lv~~~~~ 132 (187)
.+.... ..+-.+|++... +......++.+.++.+..|. +++|++.
T Consensus 123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 333321 245667877642 22233456667676666554 4555543
No 422
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.52 E-value=3.6 Score=29.84 Aligned_cols=94 Identities=9% Similarity=0.111 Sum_probs=49.6
Q ss_pred HHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHH--H
Q 029803 9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS--V 83 (187)
Q Consensus 9 ~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~--~ 83 (187)
..+..++.. .....|+.+|||.-.....+....+ +.+++-+|. |+.++.-++.++..+.. .+.+++..|..+ .
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~ 144 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSW 144 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhh
Confidence 334444443 3345899999977766666665433 567777776 66677666666654321 234568888763 4
Q ss_pred HHHHhhcccCCCceeEEEEeC
Q 029803 84 LDQLLKYSENEGSFDYAFVDA 104 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~ 104 (187)
...+.+.+......-++++.+
T Consensus 145 ~~~L~~~g~~~~~ptl~i~Eg 165 (183)
T PF04072_consen 145 IDALPKAGFDPDRPTLFIAEG 165 (183)
T ss_dssp HHHHHHCTT-TTSEEEEEEES
T ss_pred HHHHHHhCCCCCCCeEEEEcc
Confidence 444443322234445555554
No 423
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=89.51 E-value=5.5 Score=31.14 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=56.9
Q ss_pred HcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 17 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
..++.+++-.|.+ .|..+..++... +.+++.++.+++..+.+++ .+....+.....+..+.+.... ..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence 4567788888864 566666666654 5788888888776655532 2322112111112222222221 13
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+|.++-.... ..++.+++.++++|.++.-
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 468988754322 3467778899999988763
No 424
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.50 E-value=4.5 Score=31.59 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=52.2
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCC---CcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
+|.-||+|. .+..++..+. .+.+|+.++.+++.++..++. +.. ..... .......... ...+
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~~~~~-------~~~~ 67 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAADDPAE-------LGPQ 67 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CCcccCCceee-cccCCCChhH-------cCCC
Confidence 578888853 3333333332 246899999877665544432 221 11110 0000010111 2679
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|++..........++.+.+.+.++..+++
T Consensus 68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 9999987666677788888888888766654
No 425
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.43 E-value=1.4 Score=38.36 Aligned_cols=93 Identities=9% Similarity=-0.033 Sum_probs=57.7
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803 21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 97 (187)
.+|+-+ |.|..+..+++.+. .+..++.+|.+++.++.+++. + ..++.||+.+ .+.+. .-++.
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A 465 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA-----GAEKA 465 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc-----CCccC
Confidence 356664 45777777776553 256899999999988877642 2 5688888865 34432 23578
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.+++..+........-...+.+.|+..++.
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 8887754333222222233456677776665
No 426
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=89.41 E-value=5.7 Score=31.49 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=57.1
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++.+|+-.|+|. |..+..+|+... ..++++++.+++..+.+++ .+....+.....+..+.+..+. ..+.
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~ 232 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEG 232 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCC
Confidence 3567777777643 566677777753 2368888777766555443 3432111111222223333331 2356
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|+||-... ....+..+.+.|+++|.++.-.
T Consensus 233 ~d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 233 FDVGLEMSG---APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence 898775221 2346677889999999988753
No 427
>PRK10083 putative oxidoreductase; Provisional
Probab=89.34 E-value=6.7 Score=30.98 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=54.2
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
+..++.+|+-.|+| .|..++.+|+. .. ...+++++.+++..+.+++ .+...-+.....+..+.+.. .
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~---~--- 225 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE---K--- 225 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc---C---
Confidence 34567788888853 33444555554 23 2358888988877766654 24321111111222222211 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|++|- ... ....+..+++.|+++|.++.-
T Consensus 226 g~~~d~vid-~~g--~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 226 GIKPTLIID-AAC--HPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCCEEEE-CCC--CHHHHHHHHHHhhcCCEEEEE
Confidence 223565553 321 134577788999999998864
No 428
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.32 E-value=8.1 Score=31.34 Aligned_cols=83 Identities=19% Similarity=0.046 Sum_probs=47.1
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+||-+|||. |...+..+.... -++++.+|.+. ...+.+.+++...+-.-+++.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 34668999999974 443333333323 46888888654 3446666777765544445555
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803 77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
...... ....+ -..||+|+...+.
T Consensus 104 ~~~i~~~~~~~~------~~~~DvVvd~~d~ 128 (355)
T PRK05597 104 VRRLTWSNALDE------LRDADVILDGSDN 128 (355)
T ss_pred EeecCHHHHHHH------HhCCCEEEECCCC
Confidence 444322 12222 2579988765443
No 429
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.19 E-value=8.3 Score=29.44 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=49.8
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+++.+...+..-+++.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3456789999987 4554444444333 46888877533 2235556666655533345555
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCCcccHHHHH
Q 029803 77 ESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 114 (187)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~ 114 (187)
.....+ ....+ -..+|+|+...+.......+.
T Consensus 100 ~~~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln 132 (240)
T TIGR02355 100 NAKLDDAELAAL------IAEHDIVVDCTDNVEVRNQLN 132 (240)
T ss_pred eccCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHH
Confidence 443322 23333 257998886554433333333
No 430
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=89.12 E-value=7.5 Score=30.42 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=58.9
Q ss_pred HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhccc
Q 029803 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~ 92 (187)
...++.+|+-.|+ +.|..+..+|+.. +.+++.+..+++..+.+++ .+....+.....+ ..+.+....
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~---- 206 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT---- 206 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----
Confidence 3456678888874 5777778888775 4666677777776666643 3432111111112 222223221
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
....+|+++-... ...++.+++.|+++|.++.-
T Consensus 207 ~~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 207 GEKGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCCCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence 1356898884321 35667788999999988753
No 431
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=89.11 E-value=5.1 Score=32.18 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=57.5
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
...++.+||-.|+| .|..+..+++... ..+|++++.+++..+.+++ .+....+.....+....+..+. ..
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~----~~ 249 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT----DG 249 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc----CC
Confidence 34567788888764 4667777777653 2248888887776655532 3432111111122222233321 13
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+++-.... ...++.+++.|+++|.++.
T Consensus 250 ~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 250 RGADYAFEAVGR---AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEE
Confidence 569977642221 2456778899999998875
No 432
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.10 E-value=7.8 Score=28.98 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=50.6
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIE 77 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~~ 77 (187)
..+..+|+-+|||. |...+..+.... -++++.+|.+. ...+.+.+++...+..-+++.+.
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 44677899999873 443333333323 46888888762 23455566666544333455554
Q ss_pred cchHH-HHHHHhhcccCCCceeEEEEeCCCccc-HHHHHHHHhc
Q 029803 78 SEALS-VLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKL 119 (187)
Q Consensus 78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~-~~~~~~~~~~ 119 (187)
....+ ....+ -..+|+|+...+.... ....+.+.+.
T Consensus 104 ~~i~~~~~~~~------~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 104 EKIDEDNIEEL------FKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred eecCHHHHHHH------HcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 44332 22233 2579988854332222 2334444444
No 433
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.10 E-value=6.5 Score=32.56 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=53.8
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..+++|+-+|+|. |......++.+ +.+|+.+|.+|.....+.. .+. ++. +..+. + ..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l-------~~ 250 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A-------KI 250 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H-------hc
Confidence 4688999999874 55555555554 5799999998865433332 222 221 22222 1 35
Q ss_pred eeEEEEeCCCcccHHHHH-HHHhccCCCeEEEEe
Q 029803 97 FDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYD 129 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~ 129 (187)
.|+++... .....++ .....+|+|++++.-
T Consensus 251 aDVVItaT---G~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 251 GDIFITAT---GNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEE
Confidence 69887643 2344444 467899999998874
No 434
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.07 E-value=5.4 Score=30.47 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
.+..++.++|-.|+|. |..++.+|+... .+ +++++.+++..+.+++. +..+.+ .... ....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~-------- 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEI-------- 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhh--------
Confidence 3455678888888764 667777777764 45 99999888877655542 311111 1110 0110
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
....+|+++-.... ...++..++.|+++|.++.
T Consensus 156 ~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 156 GGRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 13579988753222 2356777889999998875
No 435
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=89.06 E-value=9.2 Score=29.78 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=59.3
Q ss_pred HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
.+..++.+|+-.| .+.|..+..+|+.. +.++++++.+++..+.+++ .+....+.....+..+.+....
T Consensus 138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---- 207 (324)
T cd08244 138 ATLTPGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREAL---- 207 (324)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHc----
Confidence 3445677888887 45677777888875 5789999888877665533 3432111111122222222221
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
....+|+++-.... ...+.+++.|+++|.++.
T Consensus 208 ~~~~~d~vl~~~g~----~~~~~~~~~l~~~g~~v~ 239 (324)
T cd08244 208 GGGGVTVVLDGVGG----AIGRAALALLAPGGRFLT 239 (324)
T ss_pred CCCCceEEEECCCh----HhHHHHHHHhccCcEEEE
Confidence 23469988743221 234777899999998885
No 436
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.97 E-value=1.2 Score=35.32 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...+|+|++....-+....++.+.+.++++..+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 35899999987777778889999999999986654
No 437
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=88.92 E-value=5.6 Score=31.16 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=57.9
Q ss_pred HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
..++.+||-.|+ +.|..+..+++.. +.++++++.+++..+.+++. .+....+.....+..+.+.... .
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----P 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----c
Confidence 445678888873 4677777788774 56899998887766655543 2332111111112222222221 2
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+++ +... ...++.+++.++++|.++.
T Consensus 213 ~~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 213 DGIDVYF-DNVG---GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred CCceEEE-Ecch---HHHHHHHHHhcCCCceEEE
Confidence 4689777 3321 2367778899999998875
No 438
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.89 E-value=10 Score=30.07 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=54.7
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 18 VNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
.++.+||-.|+|. |..++.+++.. +. ++++++-+++..+.+++ .+....+.....+.. .+..+. ..+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~ 230 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGT 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCC
Confidence 4567777766542 55666777765 34 68888766655554443 343211111122222 222221 235
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++-... .......+++.|+++|.++.-
T Consensus 231 ~vd~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 231 GVDVVLEMSG---NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCEEEECCC---CHHHHHHHHHHhccCCEEEEE
Confidence 7998875322 234567778999999998763
No 439
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.88 E-value=9.3 Score=29.58 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=60.1
Q ss_pred HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
...++.+||-.|+ +.|..+..+|+.. +.+++++..+++..+.++ ..+... +-....+..+.+..+
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~------ 205 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAIAEQLRAA------ 205 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccHHHHHHHh------
Confidence 3456788888885 5777888888875 578888888877655553 234321 211122222222222
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+++-.. . ...++.+++.|+++|.++.-
T Consensus 206 ~~~~d~vl~~~-~---~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 206 PGGFDKVLELV-G---TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCCceEEEECC-C---hHHHHHHHHHhccCCEEEEE
Confidence 25699887422 2 24577788999999998764
No 440
>PRK05967 cystathionine beta-lyase; Provisional
Probab=88.82 E-value=12 Score=30.86 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+|....+-+.++........+-+.+|++.....+...+.++.+|+..+..-.. ....++.++..|. .++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 45555666666665556667777888777666665666667888887654322 2234445555554 35665443334
Q ss_pred HHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCeE-EEEeCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGI-AVYDNTL 132 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG~-lv~~~~~ 132 (187)
.+.... .++..+|++.. ++......++.+.++.+..|. +++|+++
T Consensus 141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 344332 24567888874 333345567777777776654 5555554
No 441
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=88.78 E-value=8.6 Score=30.49 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=58.1
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 93 (187)
...++.+|+-.|+| .|..+..+|+.. +.++++++.+++..+.+++ .+....+.... .+....+..+.
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~----- 230 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT----- 230 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----
Confidence 34566788888853 445566677764 5789999888877666643 34321111111 22222222221
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.+|+++-... ....+..+++.|+++|.++.
T Consensus 231 ~~~~d~vi~~~g---~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 231 GGGAHVSVDALG---IPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCCCCEEEEcCC---CHHHHHHHHHHhhcCCEEEE
Confidence 227998874321 13456778899999998875
No 442
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=88.66 E-value=9.7 Score=30.09 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=61.0
Q ss_pred HHcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
...++.+||-.|++ .|..+..+++.. +.+++.+..+++..+.+++ .+....+.....+..+.+.... .
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~ 231 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELT----G 231 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHh----c
Confidence 45567888888865 677788888876 4689998888766555532 3322111111112223333321 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+++-+... ...+..+++.++++|.++.-
T Consensus 232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence 3569988853322 23567778899999999864
No 443
>PRK08328 hypothetical protein; Provisional
Probab=88.65 E-value=8.8 Score=29.06 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=44.2
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc--------------------chHHHHHHHHHhcCCCCcEEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR--------------------ETYEIGLPIIKKAGVDHKINF 75 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~--------------------~~~~~a~~~~~~~~~~~~~~~ 75 (187)
..+..+|+-+|||. |...+..+.... -++++.+|.+. ...+.+++++...+-.-.++.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 34667899999973 544444333333 47888888542 122333445554443334554
Q ss_pred EEcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803 76 IESEALS-VLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 76 ~~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
+.+...+ ....+. ..+|+|+...+.
T Consensus 103 ~~~~~~~~~~~~~l------~~~D~Vid~~d~ 128 (231)
T PRK08328 103 FVGRLSEENIDEVL------KGVDVIVDCLDN 128 (231)
T ss_pred EeccCCHHHHHHHH------hcCCEEEECCCC
Confidence 4443322 223332 578988865443
No 444
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.65 E-value=1.5 Score=34.84 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=46.2
Q ss_pred EEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803 23 TIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 101 (187)
Q Consensus 23 vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~ 101 (187)
|+|+.||.|..+.-+-.+ +.+ +.++|+++.+.+.-+.|+. + .++.+|..+....- ...+|+++
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEE
Confidence 589999999998888654 344 5679999999888888763 1 44567877653321 24689887
Q ss_pred Ee
Q 029803 102 VD 103 (187)
Q Consensus 102 ~d 103 (187)
..
T Consensus 65 gg 66 (315)
T TIGR00675 65 GG 66 (315)
T ss_pred ec
Confidence 54
No 445
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.64 E-value=10 Score=29.87 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
.+++++-+|.|. |......+... +.+|+.+|.+++..+.++ ..+. +.. +. +.+... -..+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~------l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE------VGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH------hCCC
Confidence 578999999863 33334444443 569999999876544333 2332 222 11 122222 2579
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+||..... .-.-+..++.++++++++
T Consensus 212 DiVI~t~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 212 DIIFNTIPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence 999875321 223355678899977655
No 446
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.58 E-value=9.4 Score=32.31 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=54.1
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
+|--||.| ..+..+|..+. .+.+|+..|.+++..+...+.....+. .+. ...+..+....+ ...|+|
T Consensus 3 ~IgvIGLG--~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l-------~~~d~I 70 (470)
T PTZ00142 3 DIGLIGLA--VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSL-------KKPRKV 70 (470)
T ss_pred EEEEEeEh--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcC-------CCCCEE
Confidence 34556654 44444444442 256899999999887766554322221 121 223444444332 356877
Q ss_pred EEeC-CCcccHHHHHHHHhccCCCeEEE
Q 029803 101 FVDA-DKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 101 ~~d~-~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
++-. +.......++.+.+.|++|-+++
T Consensus 71 il~v~~~~~v~~vi~~l~~~L~~g~iII 98 (470)
T PTZ00142 71 ILLIKAGEAVDETIDNLLPLLEKGDIII 98 (470)
T ss_pred EEEeCChHHHHHHHHHHHhhCCCCCEEE
Confidence 7653 44455677788889998876654
No 447
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=88.53 E-value=7.6 Score=30.24 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=59.6
Q ss_pred HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803 15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (187)
.+..++.+||--. .|-|.....+++.. +.++++.--+.+..+.++++ |...-+.....|..+....+-
T Consensus 142 y~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiT---- 211 (336)
T KOG1197|consen 142 YNVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKIT---- 211 (336)
T ss_pred cCCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhcc----
Confidence 3455667766543 44566677777764 46777766666655555554 554435555555554444331
Q ss_pred CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+...|.++=. --.+.++..+..||+.|+++.
T Consensus 212 ngKGVd~vyDs----vG~dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 212 NGKGVDAVYDS----VGKDTFAKSLAALKPMGKMVS 243 (336)
T ss_pred CCCCceeeecc----ccchhhHHHHHHhccCceEEE
Confidence 24567866632 223456677789999999886
No 448
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=88.51 E-value=8.1 Score=31.65 Aligned_cols=122 Identities=17% Similarity=0.089 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
+|.+.++=+.++.......++-.++|+......+...+.++.+|...+..-......-+.+...+. .+.+...|..+.
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l 129 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI 129 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence 455666667777777777788777777665555555555567777665443322222222233332 244444443333
Q ss_pred HHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEEeCCC
Q 029803 84 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL 132 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 132 (187)
...+. ..+..+|++... +....-.++.+.++.+..| .+++|++.
T Consensus 130 ~~~i~-----~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 130 IEAIK-----EGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred HHhcC-----ccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence 22221 125678887632 2111223455555555544 56666665
No 449
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.39 E-value=1.7 Score=35.66 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH
Q 029803 11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 65 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~ 65 (187)
-...++..+..+||-|.+|......++ ..- ..+|++||++|......+=++.
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL-~~~--P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYL-LAG--PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHH-hcC--CceEEEEeCCHHHHHHHHHHHH
Confidence 345567778889999988655554444 333 3799999999988877765543
No 450
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.39 E-value=2 Score=37.04 Aligned_cols=93 Identities=6% Similarity=-0.051 Sum_probs=56.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 97 (187)
.+++-+ |.|..+..+++.+.+ +..++.+|.+++..+.+++. ....+.+|+.+ .+.+. .-++.
T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a 482 (558)
T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCA 482 (558)
T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----Ccccc
Confidence 345664 457777777877642 56899999999887777642 27788999865 23332 23578
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.+++..........+-.+.+...|+-.++.
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 8777653222211222233455567766665
No 451
>PRK08324 short chain dehydrogenase; Validated
Probab=88.33 E-value=9.6 Score=33.76 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~ 94 (187)
+++.+|-.|+ +|..+..++..+ ..+.+|+.+|.+++..+.+.+.+... .++.++.+|..+. +....+.. ...
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3467888775 344444444443 23678999999987766665554332 3577777775321 11111100 012
Q ss_pred CceeEEEEeC
Q 029803 95 GSFDYAFVDA 104 (187)
Q Consensus 95 ~~~D~i~~d~ 104 (187)
+++|.||...
T Consensus 497 g~iDvvI~~A 506 (681)
T PRK08324 497 GGVDIVVSNA 506 (681)
T ss_pred CCCCEEEECC
Confidence 5789988764
No 452
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.23 E-value=7 Score=32.47 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=57.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~ 95 (187)
..++++-+|+ |..+..+++.+.. +..++.+|.+++..+..++.. ..+.++.+|+.+ .+... .-.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~ 296 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GID 296 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCc
Confidence 3577998777 7777777776643 578999999998877666542 236788888854 33322 235
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
.+|.|++........-....+.+.+.+.-+++
T Consensus 297 ~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 297 EADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred cCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 78888775432222222233335555543433
No 453
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.08 E-value=8.7 Score=28.32 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEE
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINF 75 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~ 75 (187)
..+..+|+-+|||. .+.++++.+ ..-++++.+|.+. ...+.+.++++..+..-+++.
T Consensus 18 ~L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 18 RLRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 34667899999864 444444433 1146888888642 123455666666554434555
Q ss_pred EEcchHHHHHHHhhcccCCCceeEEEEeCCC
Q 029803 76 IESEALSVLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
......+..+.+ -..||+|+.....
T Consensus 96 ~~~~~~~~~~~~------~~~~dvVi~~~~~ 120 (197)
T cd01492 96 DTDDISEKPEEF------FSQFDVVVATELS 120 (197)
T ss_pred EecCccccHHHH------HhCCCEEEECCCC
Confidence 554443322333 2679998875443
No 454
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.08 E-value=11 Score=30.22 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=55.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
.++.+++-.|+| .|..++.+|+.. +.+++.++.+++....+.+ ..+.. ..+...+. +.+... ...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~-~~~~~~------~~~ 244 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGAD--DYLVSSDA-AEMQEA------ADS 244 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCc--EEecCCCh-HHHHHh------cCC
Confidence 456788877753 556667777765 4678888877665444433 23432 11111221 222222 235
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+|++|-... ....++.+++.++++|.++.-..
T Consensus 245 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 245 LDYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CcEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence 897764322 23466778899999998887543
No 455
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.98 E-value=6.2 Score=32.76 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=56.1
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD 98 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D 98 (187)
+|+-+|+ |..+..++..+. .+..++.+|.+++.++.+++.. .++++.+|+.+ .+... .-..+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~-----~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREA-----GAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence 5777765 788888887663 3578999999998776655421 26778888754 23322 135788
Q ss_pred EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+++..........+....+.+.+.-.+++
T Consensus 68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 68 LLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 888764333333333344455544434443
No 456
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.86 E-value=15 Score=30.68 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCEEEEEc-ccccHHHHH--HHhhC---CCCCEEEEEeCCcchH---HHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803 20 AKKTIEIG-VFTGYSLLL--TALTI---PEDGQITAIDVNRETY---EIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 90 (187)
Q Consensus 20 ~~~vLeiG-~g~G~~~~~--la~~~---~~~~~v~~iD~~~~~~---~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (187)
+..++=+| +|.|-++.. +|..+ ..+.+|..++.++... +..+.+....+++ +.. ..+..++...+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH-
Confidence 44677778 778865543 33322 2246888888887543 3334444444443 111 1222222222221
Q ss_pred ccCCCceeEEEEeC
Q 029803 91 SENEGSFDYAFVDA 104 (187)
Q Consensus 91 ~~~~~~~D~i~~d~ 104 (187)
...+|+|++|.
T Consensus 297 ---~~~~DlVlIDt 307 (424)
T PRK05703 297 ---LRDCDVILIDT 307 (424)
T ss_pred ---hCCCCEEEEeC
Confidence 25799999995
No 457
>PRK14974 cell division protein FtsY; Provisional
Probab=87.83 E-value=13 Score=30.00 Aligned_cols=108 Identities=12% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCEEEEEc-ccccHHHHH--HHhhCC-CCCEEEEEeCCc---chHHHHHHHHHhcCCCCcEEEEEcchHHH----HHHHh
Q 029803 20 AKKTIEIG-VFTGYSLLL--TALTIP-EDGQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLL 88 (187)
Q Consensus 20 ~~~vLeiG-~g~G~~~~~--la~~~~-~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 88 (187)
|..|+=+| .|.|-++.. ++..+. .+.+|..++.+. ...+..+.+....+++-.......|.... +...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~- 218 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA- 218 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH-
Confidence 55666677 678866532 333232 235666666553 34455555555555431111112232221 1111
Q ss_pred hcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803 89 KYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL 132 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
....+|+|++|-.. .....-++.+.+.++|+.++++-+..
T Consensus 219 ----~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~ 263 (336)
T PRK14974 219 ----KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDAL 263 (336)
T ss_pred ----HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccc
Confidence 12568999999532 22334455666778898877665543
No 458
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.78 E-value=13 Score=29.84 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=55.3
Q ss_pred CCEEEEEcccc-c-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-------cCCC-----CcEEEEEcchHHHHH
Q 029803 20 AKKTIEIGVFT-G-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-------AGVD-----HKINFIESEALSVLD 85 (187)
Q Consensus 20 ~~~vLeiG~g~-G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~~~-----~~~~~~~~d~~~~~~ 85 (187)
-++|--||+|+ | .++..++.+ +.+|+..|.+++.++.+++.+.. .+.. .++++.. +..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~--- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA--- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---
Confidence 36788999872 3 334444442 78999999999988776654432 2211 1222221 2111
Q ss_pred HHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEE
Q 029803 86 QLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 86 ~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv 127 (187)
. -...|+|+-.... .-....+.++.+.++|+.+|.
T Consensus 80 a-------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 80 C-------VADADFIQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred H-------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 1 1567988875422 223467888889999987443
No 459
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.75 E-value=9.4 Score=28.33 Aligned_cols=107 Identities=17% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~ 94 (187)
++++||-.|++ |..+..+++.+ ..+.+|++++.+++......+.+... .++.++.+|..+. +..+.+.. ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46788888874 54555555444 23679999998887665554444332 2477777776431 11111000 002
Q ss_pred CceeEEEEeCCCcc--------------------cHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDN--------------------YCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~--------------------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+.+|.++....... ....++.+.+.++++|.+++.
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 45788876542110 012245556677778866653
No 460
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=87.65 E-value=11 Score=29.01 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=59.0
Q ss_pred HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
...++.+|+-.|+ +.|..+..+++.. +.+++.++.+++..+.+++ .+....+.....+..+.+.... .
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~ 205 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT----G 205 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----C
Confidence 3456788999887 4666666677764 5689999888876666543 2332112222223323233321 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+++-... ......+++.++++|.++.-
T Consensus 206 ~~~~d~v~~~~g----~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 206 GRGVDVVYDPVG----GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCCcEEEEECcc----HHHHHHHHHhhccCCEEEEE
Confidence 346898874322 13456678889999988753
No 461
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=87.49 E-value=12 Score=29.44 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=55.6
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (187)
..++.+||-.|+| .|..+..+|+... ..++++++.+++..+.++ ..+... +--...+..+.+..+. ...
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~~----~~~ 234 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAE----RLGADH-VLNASDDVVEEVRELT----GGR 234 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHH----HhCCcE-EEcCCccHHHHHHHHh----CCC
Confidence 3456788888743 3444445566543 268888888877665553 234321 1111111222223321 124
Q ss_pred ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++-... -...++.+++.|+++|.++.-
T Consensus 235 ~~dvvld~~g---~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 235 GADAVIDFVG---SDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCEEEEcCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 6998875322 134577788999999998853
No 462
>PRK09028 cystathionine beta-lyase; Provisional
Probab=87.47 E-value=15 Score=30.32 Aligned_cols=124 Identities=12% Similarity=0.076 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803 5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSV 83 (187)
Q Consensus 5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 83 (187)
|....+=..++.......++-..+|+......+...+.++.+|+..+..- .........+...+. .+.++..+..+.
T Consensus 61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~ 138 (394)
T PRK09028 61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG 138 (394)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence 34445555555555556777777777665555544456678888887643 233334444444443 244443332233
Q ss_pred HHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe-EEEEeCCCCCc
Q 029803 84 LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTLWGG 135 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~~~~ 135 (187)
+.... ..+-.+|++.. ++......++.+.++.+..| .+++|+++..+
T Consensus 139 l~~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 139 IRELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred HHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 33332 24567888874 23333456677777777655 55556665433
No 463
>PRK08655 prephenate dehydrogenase; Provisional
Probab=87.43 E-value=4.9 Score=33.57 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=45.2
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
+|.=|| |.|..+..++..+. .+.+|+++|.+++.... .....+. . ...+..+. -...|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~-~~~~~~e~----------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----E-YANDNIDA----------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----e-eccCHHHH----------hccCCEE
Confidence 566776 23444444444432 14589999988765322 1222222 1 11222221 1456888
Q ss_pred EEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 101 FVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
++..........++.+.+.++++.+++
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 776555555566677767777766443
No 464
>PRK07671 cystathionine beta-lyase; Provisional
Probab=87.37 E-value=13 Score=30.35 Aligned_cols=120 Identities=12% Similarity=0.161 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHhcCCCCcEEEEEc-chH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL 81 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~ 81 (187)
+|....|-..++........+-+++|++.....+ ..+.++.+|++.+..-. ......+.+...+. .+.++.. |..
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 4667777777777666666666888777554443 34455778887765322 33333333444443 2444433 333
Q ss_pred HHHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCC-eEEEEeCCC
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG-GIAVYDNTL 132 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~ 132 (187)
+....+ .+...+|++... +......++.+.++.+.. ..+++|+++
T Consensus 126 ~l~~ai------~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~ 173 (377)
T PRK07671 126 EVEEAI------RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF 173 (377)
T ss_pred HHHHhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 332222 235678887532 211223455555555554 456666654
No 465
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.35 E-value=6.8 Score=28.26 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=49.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
..+++|.-||+| .|.-....++.+ +.+|+++|.++.... .....+ + ...+..+.++ .
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell~----------~ 91 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEE----GADEFG----V--EYVSLDELLA----------Q 91 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHTT----E--EESSHHHHHH----------H
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhh----hccccc----c--eeeehhhhcc----------h
Confidence 367889999985 344444455554 579999999887544 111111 2 2235444443 4
Q ss_pred eeEEEEeCC--CcccHHHHHHHHhccCCCeEEE
Q 029803 97 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 97 ~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv 127 (187)
.|+|++... ++...-+=+..+..||+|.++|
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence 788888653 2222222344568899988766
No 466
>PRK08064 cystathionine beta-lyase; Provisional
Probab=87.34 E-value=15 Score=30.15 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+|...++-+.++........+-+++|+......+. .+.++.+|+..+..=. ........++..|. .+.++..+-.+
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 129 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE 129 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence 56677777777776665566666776665444443 4555678887765222 33333444444453 24444332223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCC-CeEEEEeCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL 132 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
.+.... ..+..+|++... +......++.+.++.+. |..+++|+..
T Consensus 130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 233221 235678887642 22222234445454444 4456666654
No 467
>PRK07582 cystathionine gamma-lyase; Validated
Probab=87.26 E-value=11 Score=30.65 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
.+....+-+.++... +..++-.++|+......+...+.++.+|+..+..-.. ...++..+...|. .+.++..+..
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~- 125 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM- 125 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence 455667777777766 6677778888876655555556657788887755433 3334444444443 2333332211
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCC-CeEEEEeCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL 132 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
.... ....++|++... +......++.+.++.+. |..+++|+++
T Consensus 126 -~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 126 -AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred -HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 1111 245688887632 11122345666666654 5566777665
No 468
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.01 E-value=13 Score=29.07 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=54.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-------CC-C--------CcEEEEEcchHHH
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GV-D--------HKINFIESEALSV 83 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~-~--------~~~~~~~~d~~~~ 83 (187)
-++|.-||+|.=..++....... +.+|+.+|.+++.++.+.+.+... +. . .+++. ..+. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~- 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDL-E- 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCH-H-
Confidence 35788888864333222221112 568999999999888765543321 11 0 11222 1222 1
Q ss_pred HHHHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEE
Q 029803 84 LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 84 ~~~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+ ...|+|+..... .....+++.+.+.++++.+++.
T Consensus 80 --~~-------~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 80 --DL-------ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred --Hh-------cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 22 467988876432 2244667888889999887763
No 469
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=87.01 E-value=2.7 Score=31.93 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=40.5
Q ss_pred ccccHHHHH--HHhhCC-CCCEEEEEeCCcch--HHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029803 28 VFTGYSLLL--TALTIP-EDGQITAIDVNRET--YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 102 (187)
Q Consensus 28 ~g~G~~~~~--la~~~~-~~~~v~~iD~~~~~--~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~ 102 (187)
.|.|-++.. ++..+. .+.+|..+|-+|+. .++.++......+++++.+...+-...+...... .+...||+|++
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~Vlv 89 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLV 89 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEE
Confidence 356655544 344332 37899999987764 3443322222334556777665543333332110 01246999999
Q ss_pred eC
Q 029803 103 DA 104 (187)
Q Consensus 103 d~ 104 (187)
|.
T Consensus 90 Dl 91 (231)
T PF07015_consen 90 DL 91 (231)
T ss_pred eC
Confidence 93
No 470
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.93 E-value=13 Score=30.45 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=45.9
Q ss_pred HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+|+-+|||. |...+..+.... -++++.+|.+. ...+.+++++...+-.-+++.+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 34667899999973 433333333323 46888888652 2345556666655433345555
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803 77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK 106 (187)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~ 106 (187)
...... ....+. ..+|+|+...+.
T Consensus 117 ~~~i~~~~~~~~~------~~~DlVid~~Dn 141 (370)
T PRK05600 117 RERLTAENAVELL------NGVDLVLDGSDS 141 (370)
T ss_pred eeecCHHHHHHHH------hCCCEEEECCCC
Confidence 544332 223332 579988754443
No 471
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=86.92 E-value=10 Score=31.46 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=59.9
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803 3 LLTIHGQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81 (187)
Q Consensus 3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 81 (187)
++...-.+..........+++|-||.| .|...+..+..-. -.+++.+- ..++.|++...+.+ .+.. . +
T Consensus 161 i~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g-~~~i~IaN---RT~erA~~La~~~~----~~~~--~-l 229 (414)
T COG0373 161 ISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKG-VKKITIAN---RTLERAEELAKKLG----AEAV--A-L 229 (414)
T ss_pred hHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCC-CCEEEEEc---CCHHHHHHHHHHhC----Ceee--c-H
Confidence 344444556666555678899999998 6655443332211 14555544 45667776666655 1111 1 2
Q ss_pred HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCCCC
Q 029803 82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTLW 133 (187)
Q Consensus 82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~~ 133 (187)
+.+... -..+|+||+....+++.--...+.+.+++. ..+++|-...
T Consensus 230 ~el~~~------l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 230 EELLEA------LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred HHHHHh------hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 222222 267999999755444432223333333322 2666664443
No 472
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=86.91 E-value=14 Score=30.81 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+|.+..|-..++.....+..+-.++|+......+...+.++.+|+..+..- ......+..+...+. ++.++..+-.+
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e 140 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE 140 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence 566777777788777777888888887776666655555567777766321 223333344444453 24444333233
Q ss_pred HHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe-EEEEeCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTL 132 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 132 (187)
.+.... .++..+|++.. ++......++++.++.+..| .+++|+++
T Consensus 141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 333322 23567888763 22122223455555555545 55566654
No 473
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=86.82 E-value=13 Score=29.56 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcccCC
Q 029803 19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE 94 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~ 94 (187)
++.+||-.|+| .|..+..+|+... ..++++++.+++..+.+++ .+.. .++.. +..+.+.... .
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~ 241 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G 241 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence 56778887754 4556666777653 2378888888777666643 2432 22222 2222222221 1
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+.+|+++-.... ...++.+++.|+++|.++.-
T Consensus 242 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 242 GGVDAVIDFVNN---SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence 268988742211 24577888999999998853
No 474
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.79 E-value=7.5 Score=26.21 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803 10 LMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 88 (187)
Q Consensus 10 ll~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (187)
+...+++.....+|+|+|.|.=. .+..+++. +..++++|+.+. + .+ .-++++..|..+.--.+
T Consensus 4 ~a~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~-------~---a~--~g~~~v~DDitnP~~~i- 67 (129)
T COG1255 4 VAEYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK-------T---AP--EGLRFVVDDITNPNISI- 67 (129)
T ss_pred HHHHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc-------c---Cc--ccceEEEccCCCccHHH-
Confidence 34455666677799999986543 33334432 578999999876 1 11 23778888876532122
Q ss_pred hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
=...|+|+.-..++..+..+-.+.+.++-.-+|.
T Consensus 68 -----Y~~A~lIYSiRpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 68 -----YEGADLIYSIRPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred -----hhCccceeecCCCHHHHHHHHHHHHhhCCCEEEE
Confidence 1568999987666666665555555555554443
No 475
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=86.70 E-value=14 Score=29.16 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=53.4
Q ss_pred HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029803 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY 90 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~ 90 (187)
...++.+||-.|+ +.|..++.+|+.. +.+++.+.-+++..+..++.+...+....+..... +..+.+....
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~-- 218 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP-- 218 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc--
Confidence 3456788888774 5677778888876 45665554444222222333333443221111111 2223333221
Q ss_pred ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.+|+|+- .... ..+..+++.|+++|.++.
T Consensus 219 ---~~~~d~vld-~~g~---~~~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 219 ---GGRPKLALN-CVGG---KSATELARLLSPGGTMVT 249 (341)
T ss_pred ---CCCceEEEE-CcCc---HhHHHHHHHhCCCCEEEE
Confidence 126898874 3221 123456788999998875
No 476
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.67 E-value=4.9 Score=31.47 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEE
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~l 126 (187)
...|+||+..........++++.+.|++|.++
T Consensus 63 ~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 63 AEADLVIVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred ccCCEEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence 45788888776666777777777777776554
No 477
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=86.66 E-value=11 Score=29.76 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=58.1
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY 90 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~ 90 (187)
...++.+||-.|+| .|..++.+|+.. +.+ +++++.+++..+.+++ .+.. .++.. +..+.+....
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~-- 230 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELT-- 230 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHh--
Confidence 34567788888764 566667777764 456 8888888877665532 2332 22222 2222222221
Q ss_pred ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
....+|+|+-... ....+..+++.|+++|.++.-
T Consensus 231 --~~~~vd~vld~~~---~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 231 --DGRGADVVIVATG---SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred --CCcCCCEEEECCC---ChHHHHHHHHHhhcCCEEEEE
Confidence 2345898874322 124667778899999988864
No 478
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.48 E-value=2.7 Score=36.81 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=55.7
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~ 97 (187)
.+|+-+|+ |..+..+++.+.. +..++.+|.+++.++.+++. + ..++.||+.+ .+.+. .-++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A 465 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA-----GAAKA 465 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc-----CCCcC
Confidence 56777665 6666666655432 46899999999988877652 2 5688889865 33332 23578
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|++++..+........-...+.+.|+-.++.
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 8887754332222222223345556655554
No 479
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=86.44 E-value=11 Score=28.94 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=57.1
Q ss_pred HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (187)
...++.+++-.|+ +.|..+..+++.. +.+++.++.+++..+.+++ .+....+.....+..+.+..+. .
T Consensus 136 ~~~~~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~ 205 (323)
T cd05276 136 GLKAGETVLIHGGASGVGTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEAT----G 205 (323)
T ss_pred CCCCCCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHh----C
Confidence 3456778888885 4666666677764 5778888887776665533 2332111111112222222221 1
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+++-.... ..+...++.++++|.++.-
T Consensus 206 ~~~~d~vi~~~g~----~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 206 GRGVDVILDMVGG----DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred CCCeEEEEECCch----HHHHHHHHhhccCCEEEEE
Confidence 3579988753321 2356677888999988753
No 480
>PRK07877 hypothetical protein; Provisional
Probab=86.43 E-value=11 Score=33.80 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=50.6
Q ss_pred HcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCc------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803 17 LVNAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIE 77 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~-~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~~ 77 (187)
..+..+|+-+|||-|...+..+.... - ++++.+|.+. ...+.+++++...+-.-+++.+.
T Consensus 104 ~L~~~~V~IvG~GlGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLSVGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEecHHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 44677899999998876555444332 2 6888887533 23455667776655444566666
Q ss_pred cchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029803 78 SEALS-VLDQLLKYSENEGSFDYAFVDAD 105 (187)
Q Consensus 78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~ 105 (187)
..... .+..+. ..+|+|+-..+
T Consensus 183 ~~i~~~n~~~~l------~~~DlVvD~~D 205 (722)
T PRK07877 183 DGLTEDNVDAFL------DGLDVVVEECD 205 (722)
T ss_pred ccCCHHHHHHHh------cCCCEEEECCC
Confidence 65433 344442 56898775444
No 481
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.42 E-value=6.8 Score=30.86 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~ 95 (187)
++++||-.| |+|+.+..++..+- .+.+|+++..++.............+...+++++.+|..+. +..+. .
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~------~ 76 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI------D 76 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH------c
Confidence 356788777 56777777776552 35688777766654433322222222234688888887653 33332 3
Q ss_pred ceeEEEEeC
Q 029803 96 SFDYAFVDA 104 (187)
Q Consensus 96 ~~D~i~~d~ 104 (187)
.+|.|+..+
T Consensus 77 ~~d~vih~A 85 (325)
T PLN02989 77 GCETVFHTA 85 (325)
T ss_pred CCCEEEEeC
Confidence 578887654
No 482
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.26 E-value=7.8 Score=27.87 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=51.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCCcee
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~D 98 (187)
+++.+-+|+..-..-..... .. ..++.++|.++-.+. +. ..+++. +... ++...+... .++||
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~G-A~~iltveyn~L~i~---~~-----~~dr~ssi~p~---df~~~~~~y---~~~fD 65 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HG-AAKILTVEYNKLEIQ---EE-----FRDRLSSILPV---DFAKNWQKY---AGSFD 65 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cC-CceEEEEeecccccC---cc-----cccccccccHH---HHHHHHHHh---hccch
Confidence 56788888876554333333 22 568999998652211 00 011111 2222 333333222 57899
Q ss_pred EEEEeC-----------CC---cccHHHHHHHHhccCCCeEEEEe
Q 029803 99 YAFVDA-----------DK---DNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 99 ~i~~d~-----------~~---~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++.+-+ ++ ......+..+.++||+||.+++.
T Consensus 66 ~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 66 FAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred hhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 875431 22 22344566667899999999885
No 483
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=86.25 E-value=9.3 Score=31.40 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=63.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hH--HHHHHHhhcccCC
Q 029803 20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---AL--SVLDQLLKYSENE 94 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~--~~~~~~~~~~~~~ 94 (187)
...++=-|+|++..=..+.+.++++.+|..+..- .+=+.-.+.++.++.. +..+..+ +. +.+...++. .
T Consensus 56 ~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG-~FG~R~~~ia~~~g~~--v~~~~~~wg~~v~p~~v~~~L~~---~ 129 (383)
T COG0075 56 GDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNG-KFGERFAEIAERYGAE--VVVLEVEWGEAVDPEEVEEALDK---D 129 (383)
T ss_pred CcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCC-hHHHHHHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhc---C
Confidence 3556666999998888888888878999998853 3334444455555543 4444332 21 222333222 4
Q ss_pred CceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEeCC
Q 029803 95 GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNT 131 (187)
Q Consensus 95 ~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+.++.|++-++. ......++.+.++.|..|.+++-|.
T Consensus 130 ~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDa 168 (383)
T COG0075 130 PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDA 168 (383)
T ss_pred CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEe
Confidence 688888876643 2334456666666666665554443
No 484
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=86.21 E-value=7.4 Score=30.48 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCC
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~ 95 (187)
++++||-.|+ +|+.+..+++.+- .+.+|++++.++.............+...+++++.+|..+. +..+. .
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~ 75 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVV------D 75 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHH------c
Confidence 3467777664 7888888777662 35688888776554332222211112224688899988652 33321 4
Q ss_pred ceeEEEEeC
Q 029803 96 SFDYAFVDA 104 (187)
Q Consensus 96 ~~D~i~~d~ 104 (187)
.+|.||..+
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 579887654
No 485
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.11 E-value=9.4 Score=29.98 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcc
Q 029803 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYS 91 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~ 91 (187)
.+..++.+||-+|+| .|..++.+|+.. +.+ ++.++.+++..+.+++ .+.. .++..+..+... ...
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~--- 222 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED--- 222 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh---
Confidence 345567889988865 356667777765 345 8888888877666543 2322 222222111111 111
Q ss_pred cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
....+|+++-... ....+..+++.|+++|.++.
T Consensus 223 -~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 -NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred -cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence 2357998885321 23567777899999998875
No 486
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.03 E-value=0.65 Score=30.83 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=23.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc
Q 029803 19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR 54 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~ 54 (187)
++...+|||||.|...--+.+. +.+=.++|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4567999999999887666553 55667788643
No 487
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.96 E-value=13 Score=29.08 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029803 16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 93 (187)
...++.+++-.|+| .|..+..+++.. +.+++.++.+++..+.+++ .+....+.... .+..+.+..+. .
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~ 226 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----G 226 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----C
Confidence 34456666665543 455556666664 5789999888777666654 23222111111 22333333331 2
Q ss_pred CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...+|+++-... ...+..+++.|+++|.++.
T Consensus 227 ~~~~d~~i~~~~----~~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 227 GRGVDHVVEVGG----PGTLAQSIKAVAPGGVISL 257 (336)
T ss_pred CCCCcEEEECCC----hHHHHHHHHhhcCCCEEEE
Confidence 357998874321 2456778899999999875
No 488
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=85.91 E-value=9 Score=31.44 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHH
Q 029803 9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL 87 (187)
Q Consensus 9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~ 87 (187)
-+|..+........|+-++=..|..+++++..-+ +.+--+--.-...++|++.++++.. +++.. ..+.+
T Consensus 34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~~~--- 103 (378)
T PRK15001 34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLD--STADY--- 103 (378)
T ss_pred HHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeec--ccccc---
Confidence 3455554432223799999999999999985422 2221122233445678888887632 44442 22222
Q ss_pred hhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEEe
Q 029803 88 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 88 ~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+|++-..+. .....+.++.+.|.+|+.+++-
T Consensus 104 ------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 104 ------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred ------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 35699999875443 2344577778899999998764
No 489
>PRK07411 hypothetical protein; Validated
Probab=85.78 E-value=15 Score=30.23 Aligned_cols=99 Identities=18% Similarity=0.108 Sum_probs=53.0
Q ss_pred HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803 17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI 76 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 76 (187)
..+..+||-+||| .|...+..+.... -++++.+|.+. ...+.+.+++...+..-+++.+
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 3466789999997 3433333322223 46888888632 2345566677665544456666
Q ss_pred EcchHH-HHHHHhhcccCCCceeEEEEeCCCcccHHHHH-HHHhccCC
Q 029803 77 ESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKV 122 (187)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~-~~~~~L~~ 122 (187)
...... ....+ -..||+|+...+.......+. .+.+.-+|
T Consensus 114 ~~~~~~~~~~~~------~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDI------LAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHH------HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 654433 22233 257998876544333333333 33444444
No 490
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=85.75 E-value=2.5 Score=26.15 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=20.2
Q ss_pred HcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeC
Q 029803 17 LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDV 52 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~ 52 (187)
...|++||-||+.+|+ .+..++.++..++..+++-.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 3567999999999997 34345544444566666544
No 491
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.63 E-value=3.4 Score=33.90 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=44.7
Q ss_pred CcEEEEEcchHHHHHHHhhcccCCCceeEEEE-eC----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803 71 HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 133 (187)
Q Consensus 71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~-d~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+++++++++..+.+... ..+++|.+++ |+ +.+...+.++.+.+.++|||.+++-+...
T Consensus 275 drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 68999999999988764 2578997754 43 33456677888899999999999865543
No 492
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.60 E-value=11 Score=26.77 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=64.4
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803 22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i 100 (187)
+|-=||+ |..+..+++.+. .+..|+..|.+++..+...+. + .+ ...+..+... ..|+|
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g----~~-~~~s~~e~~~----------~~dvv 61 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G----AE-VADSPAEAAE----------QADVV 61 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T----EE-EESSHHHHHH----------HBSEE
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h----hh-hhhhhhhHhh----------cccce
Confidence 4455666 566666666552 367899999988765544432 2 22 2334444433 35999
Q ss_pred EEeCCC-cccHHHHHH--HHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029803 101 FVDADK-DNYCNYHER--LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 177 (187)
Q Consensus 101 ~~d~~~-~~~~~~~~~--~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~ 177 (187)
++.... ......+.. +.+.|++|.+++-..+. .-...+++.+.+.. .+....--|+.
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~-------------------~p~~~~~~~~~~~~-~g~~~vdapV~ 121 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTI-------------------SPETSRELAERLAA-KGVRYVDAPVS 121 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---------------------HHHHHHHHHHHHH-TTEEEEEEEEE
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCc-------------------chhhhhhhhhhhhh-ccceeeeeeee
Confidence 886533 455666666 77888888777754333 22235555555543 34666666764
Q ss_pred Cc
Q 029803 178 DG 179 (187)
Q Consensus 178 ~G 179 (187)
.|
T Consensus 122 Gg 123 (163)
T PF03446_consen 122 GG 123 (163)
T ss_dssp SH
T ss_pred cc
Confidence 43
No 493
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.59 E-value=13 Score=29.07 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=52.7
Q ss_pred CEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CCC-----------------CcEEEEEcc
Q 029803 21 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-----------------HKINFIESE 79 (187)
Q Consensus 21 ~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-----------------~~~~~~~~d 79 (187)
++|.-||+|. |. .+..++.. +.+|+.+|.+++.++.+++.+... ++. .++.. ..+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCC
Confidence 5788888862 22 22223322 568999999999998776654431 110 01111 111
Q ss_pred hHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCCCeEEE
Q 029803 80 ALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~gG~lv 127 (187)
. + .+ ...|+|+....... ....++++.+.++++.+++
T Consensus 80 ~-~---~~-------~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 80 Y-E---SL-------SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H-H---Hh-------CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1 11 45798887653322 4567777878888877665
No 494
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=85.56 E-value=15 Score=28.72 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=58.0
Q ss_pred HcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803 17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 94 (187)
Q Consensus 17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (187)
..++.+++-.| ...|..+..+++.. +.++++++.+++..+.+++ .+....+.....+..+.+..+. ..
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~ 207 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVERVKEIT----GG 207 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHHHHHHHc----CC
Confidence 44567777765 35677777788875 5788999888776665532 3432112111222223333331 23
Q ss_pred CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803 95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129 (187)
Q Consensus 95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+|+++ +... .......++.++++|.++.-
T Consensus 208 ~~~d~vl-~~~~---~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 208 KKVRVVY-DSVG---KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred CCeEEEE-ECCc---HHHHHHHHHHhccCCEEEEE
Confidence 4689776 4322 23556678999999988853
No 495
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=85.47 E-value=14 Score=29.08 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803 20 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 97 (187)
Q Consensus 20 ~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (187)
+.+||-.|+ +.|..++.+|+... +.+++++..+++..+.+++ .+....+. ...+....+... ..+.+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~-~~~~~~~~i~~~-----~~~~v 217 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVID-HSKPLKAQLEKL-----GLEAV 217 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEE-CCCCHHHHHHHh-----cCCCC
Confidence 678888874 56777777887642 5688998877766655532 34321111 112222323322 13469
Q ss_pred eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803 98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128 (187)
Q Consensus 98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+++ +.. .....+..+++.|+++|.++.
T Consensus 218 d~vl-~~~--~~~~~~~~~~~~l~~~G~~v~ 245 (336)
T TIGR02817 218 SYVF-SLT--HTDQHFKEIVELLAPQGRFAL 245 (336)
T ss_pred CEEE-EcC--CcHHHHHHHHHHhccCCEEEE
Confidence 9887 421 123456778889999998875
No 496
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=85.24 E-value=16 Score=29.92 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803 4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS 82 (187)
Q Consensus 4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 82 (187)
+|.+..|=..++........+-.++|+......++ .+.++.+|+..+.. +.........+...+.. +.++..+-.+
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~--v~~vd~~d~e 125 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS--CTIIDTSDLS 125 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeE--EEEcCCCCHH
Confidence 56677777777777767777888888776654443 45557788886642 22233333334444432 3333222223
Q ss_pred HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEEeCCC
Q 029803 83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL 132 (187)
Q Consensus 83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 132 (187)
.+.... .++..+|++... +......++.+.++.+..| .+++|++.
T Consensus 126 ~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~ 173 (380)
T PRK06176 126 QIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTF 173 (380)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCc
Confidence 333321 235678887532 2112223555556666555 55555554
No 497
>PRK06940 short chain dehydrogenase; Provisional
Probab=85.08 E-value=14 Score=28.53 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029803 21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 98 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D 98 (187)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++.++...+.+...+ .++.++.+|..+. +..+...-...+++|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 35565554 56778888777657899999988776665555554333 3567777776331 222111000125789
Q ss_pred EEEEeC
Q 029803 99 YAFVDA 104 (187)
Q Consensus 99 ~i~~d~ 104 (187)
.++..+
T Consensus 79 ~li~nA 84 (275)
T PRK06940 79 GLVHTA 84 (275)
T ss_pred EEEECC
Confidence 888764
No 498
>PRK07680 late competence protein ComER; Validated
Probab=85.08 E-value=7.2 Score=30.16 Aligned_cols=87 Identities=15% Similarity=0.025 Sum_probs=49.1
Q ss_pred EEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803 22 KTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 96 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (187)
+|.=||+ |..+..++..+... ..++.++.+++..+...+.+ . .+.. ..+..+.+ ..
T Consensus 2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~-----~-g~~~-~~~~~~~~----------~~ 62 (273)
T PRK07680 2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY-----P-GIHV-AKTIEEVI----------SQ 62 (273)
T ss_pred EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc-----C-CeEE-ECCHHHHH----------Hh
Confidence 4666776 44444444443212 36888898876554433221 1 1332 22333322 35
Q ss_pred eeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803 97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127 (187)
Q Consensus 97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
.|+||+...+......++.+.+.++++..++
T Consensus 63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence 6999887655556677777777787776544
No 499
>PRK06153 hypothetical protein; Provisional
Probab=85.07 E-value=20 Score=29.54 Aligned_cols=98 Identities=18% Similarity=0.107 Sum_probs=53.3
Q ss_pred HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc----------------------chHHHHHHHHHhcCCCC
Q 029803 15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR----------------------ETYEIGLPIIKKAGVDH 71 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~----------------------~~~~~a~~~~~~~~~~~ 71 (187)
.+..+..+|+-+||| +|...+..+...+ -++++.+|.+. ...+.+++++...+.
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-- 247 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-- 247 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC--
Confidence 345577899999987 5555555555555 57899888642 122334555554442
Q ss_pred cEEEEEcchHH-HHHHHhhcccCCCceeEEEEeCCCcccHH-HHHHHHhccCC
Q 029803 72 KINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCN-YHERLMKLLKV 122 (187)
Q Consensus 72 ~~~~~~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~-~~~~~~~~L~~ 122 (187)
.+..+...... .+..+ ..+|+||...+...... ..+.+.+...|
T Consensus 248 ~I~~~~~~I~~~n~~~L-------~~~DiV~dcvDn~~aR~~ln~~a~~~gIP 293 (393)
T PRK06153 248 GIVPHPEYIDEDNVDEL-------DGFTFVFVCVDKGSSRKLIVDYLEALGIP 293 (393)
T ss_pred eEEEEeecCCHHHHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 24444333221 22222 67999987655433333 33444444444
No 500
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.03 E-value=0.87 Score=37.95 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=58.3
Q ss_pred HcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHH-HHHHHhhccc
Q 029803 17 LVNAKKTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS-VLDQLLKYSE 92 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~-~~~~~~~~~~ 92 (187)
..+|..+.++|+|.|. +++...-... .-.++.||.+..+.....++.+.-..-... ++.. ...+ .++. .
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t-~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r~~~pi-----~ 270 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQT-KREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHRQRLPI-----D 270 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccc-cceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhcccCCC-----C
Confidence 4567788899888664 3333222211 457899999999999888887651111111 1111 1111 1121 1
Q ss_pred CCCceeEEEEeCC------CcccHHHH-HHHHhccCCCeEEEE
Q 029803 93 NEGSFDYAFVDAD------KDNYCNYH-ERLMKLLKVGGIAVY 128 (187)
Q Consensus 93 ~~~~~D~i~~d~~------~~~~~~~~-~~~~~~L~~gG~lv~ 128 (187)
..+.||++++.+. ...-.... .......++|+.+++
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 2456999998742 22122223 333468888988876
Done!