BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029804
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 7/172 (4%)
Query: 1 MRCKNPTLCSGRGTRVILTDLNHSN--QTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
+RCK CSG V +TD+N+ F +S +AF +L+ G I G++DVE+
Sbjct: 76 VRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEF 135
Query: 59 KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
+RV C+Y V E PNYLAV V Y ++V M++ S+ W M ++G
Sbjct: 136 RRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWG 195
Query: 119 AVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQI 168
A+W DT++ G R S GK + AK+V+PA+W+P +Y S VQ
Sbjct: 196 AIWRMDTAKALKGPFSIRLTSES---GKKVIAKDVIPANWRPDAVYTSNVQF 244
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 1 MRCKNPTLCSGRGTRVILTDLNHSN--QTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58
++C P CSG V +TD N F +S AF A++ +G Q + G +++++
Sbjct: 76 IKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQF 135
Query: 59 KRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYG 118
+RV C+Y E PNYLA+ V Y G ++VA+D+ + G W + ++G
Sbjct: 136 RRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWG 195
Query: 119 AVW--DTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNS 164
A+W DT G R+ G + A++V+P WK Y S
Sbjct: 196 AIWRIDTPDKLTGPFTVRYTTEGGTKTE---AEDVIPEGWKADTSYES 240
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 76 ESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQF 133
E +LAV V Y+G M +++ + GS W M++ G VW D+ G F
Sbjct: 9 EKGSNEKHLAVLVKYEGDT--MAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNF 66
Query: 134 RFVVTSGYDGKWIWAKNVLPADWKPGMIY 162
RF+ G + +V+P + G Y
Sbjct: 67 RFLTEKGMKNVF---DDVVPEKYTIGATY 92
>pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From
Streptococcus Suis Type 2
pdb|3O03|A Chain A, Quaternary Complex Structure Of Gluconate 5-Dehydrogenase
From Streptococcus Suis Type 2
Length = 291
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 93 GQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVL 152
G MVA ++VG + + N G + + A QFR V+ + +I +K V+
Sbjct: 97 GIQAMVAQIESEVGIIDI--LVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVI 154
Query: 153 PADWKPGM--IYNSGVQITDIAKEGCSESECGDGSWK 187
P+ K G I N ++++ +E S G K
Sbjct: 155 PSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLK 191
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 66 KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR 125
+NQ L +R S +Y GG E V + + N Y VWDT
Sbjct: 434 QNQGLPLRRHHSDLYSHYF-------GGLAETVLVVRSMSTLLNXDY-------VWDTVF 479
Query: 126 VPNGALQFRFVVTSGY 141
P+GA++ RF T GY
Sbjct: 480 HPSGAIEIRFYAT-GY 494
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 66 KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR 125
+NQ L +R S +Y GG E V + + N Y VWDT
Sbjct: 419 QNQGLPLRRHHSDLYSHYF-------GGLAETVLVVRSMSTLLNXDY-------VWDTVF 464
Query: 126 VPNGALQFRFVVTSGY 141
P+GA++ RF T GY
Sbjct: 465 HPSGAIEIRFYAT-GY 479
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 66 KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR 125
+NQ L +R S +Y GG E V + + N Y VWDT
Sbjct: 406 QNQGLPLRRHHSDLYSHYF-------GGLAETVLVVRSMSTLLNXDY-------VWDTVF 451
Query: 126 VPNGALQFRFVVTSGY 141
P+GA++ RF T GY
Sbjct: 452 HPSGAIEIRFYAT-GY 466
>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 967
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNL 70
G V TD+N + D I + FM + GK Q++ G V V +R +++ L
Sbjct: 277 GFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEV---GQVSVSLQRASGDFQTTKL 331
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNL 70
G V TD+N + D I + FM + GK Q++ G V V +R +++ L
Sbjct: 277 GFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEV---GQVSVSLQRASGDFQTTKL 331
>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure
Length = 959
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNL 70
G V TD+N + D I + FM + GK Q++ G V V +R +++ L
Sbjct: 277 GFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEV---GQVSVSLQRASGDFQTTKL 331
>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|A Chain A, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 957
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNL 70
G V TD+N + D I + FM + GK Q++ G V V +R +++ L
Sbjct: 277 GFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEV---GQVSVSLQRASGDFQTTKL 331
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 86 VKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120
V+V++ G T VA+ ++G SN+G ++ N G V
Sbjct: 1828 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1862
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 86 VKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQF 133
V+V++ G T VA+ ++G SN+G ++ N G V + ALQ+
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV--AASFSQEALQY 1828
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,931,837
Number of Sequences: 62578
Number of extensions: 239277
Number of successful extensions: 643
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 16
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)